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Morelli F, Benedetti Y, Szkudlarek M, Abou Zeid F, Delgado JD, Kaczmarski M. Potential hotspots of amphibian roadkill risk in Spain. JOURNAL OF ENVIRONMENTAL MANAGEMENT 2023; 342:118346. [PMID: 37315465 DOI: 10.1016/j.jenvman.2023.118346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/21/2023] [Revised: 06/01/2023] [Accepted: 06/06/2023] [Indexed: 06/16/2023]
Abstract
We test a forecasting strategy to identify potential hotspots of amphibian roadkill, combining the spatial distribution of amphibians, their relative risk of collision with vehicles and data on road density in Spain. We extracted a large dataset from studies reporting road casualties of 39 European amphibian species and then estimated the 'relative roadkill risk' of species as the frequency of occurrence of casualties for each amphibian and standardized by the range of distribution of the species in Europe. Using a map with the spatial distribution of Spanish amphibians at a spatial resolution of 10 × 10 Km squares, we estimated the 'cumulative relative risk of roadkill' for each amphibian assemblage as the sum of risk estimates previously calculated for each species. We also calculated the total length of roads in each square (road density). Finally, combining all layers of information, we elaborated a forecasting map highlighting the potential amphibian roadkill risk across Spain. Our findings are relevant to suggest areas that should be focused on at more detailed spatial scales. Additionally, we found that the frequency of roadkill was unrelated to the evolutionary distinctiveness score and conservation status of amphibian species, while was positively correlated with their distribution range.
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Affiliation(s)
- Federico Morelli
- Czech University of Life Sciences Prague, Faculty of Environmental Sciences, Community Ecology & Conservation Research Group, Kamýcká 129, CZ-165 00, Prague 6, Czech Republic; Institute of Biological Sciences, University of Zielona Góra, Prof. Z. Szafrana 1, 65-516, Zielona Góra, Poland.
| | - Yanina Benedetti
- Czech University of Life Sciences Prague, Faculty of Environmental Sciences, Community Ecology & Conservation Research Group, Kamýcká 129, CZ-165 00, Prague 6, Czech Republic
| | - Michał Szkudlarek
- Institute of Biological Sciences, University of Zielona Góra, Prof. Z. Szafrana 1, 65-516, Zielona Góra, Poland
| | - Farah Abou Zeid
- Czech University of Life Sciences Prague, Faculty of Environmental Sciences, Community Ecology & Conservation Research Group, Kamýcká 129, CZ-165 00, Prague 6, Czech Republic
| | - Juan D Delgado
- Área de Ecología, Dept. Sistemas Físicos, Químicos y Naturales, Univ. Pablo de Olavide, E-41013, Ctra. de Utrera Km.1, Sevilla, Spain
| | - Mikołaj Kaczmarski
- Poznań University of Life Sciences, Institute of Zoology, Wojska Polskiego 71C, 60-625, Poznań, Poland
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2
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Centomo E, Roner L, Salvatori M, Pedrini P, Romano A. Rare and Hungry: Feeding Ecology of the Golden Alpine Salamander, an Endangered Amphibian in the Alps. Animals (Basel) 2023; 13:2135. [PMID: 37443933 DOI: 10.3390/ani13132135] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2023] [Revised: 06/23/2023] [Accepted: 06/24/2023] [Indexed: 07/15/2023] Open
Abstract
Amphibians are considered critical species in the nutrient flow within and across ecosystems, and knowledge on their trophic ecology and niches is crucial for their conservation. For the first time we studied the trophic ecology of the rare and endemic Salamandra atra aurorae in a mixed temperate forest in northern Italy. We aimed to define the realized trophic niche, investigate the prey selectivity and explore possible levels of individual specialization. In summer 2022 we obtained stomach contents from 53 salamanders by stomach flushing and prey availability using pitfall traps. We used the Costello graphical method to analyse the realized trophic niche, and the relativized electivity index to study prey selectivity. Our results show that the Golden Alpine salamander adopts a generalist feeding strategy with positive selection of few prey categories (e.g., Myriapoda, Hymenoptera except Formicidae). Food preference seems to be driven by size, movement ability and chitinization of the prey. A high degree of inter-individual diet variation, modularity and clustering was found, describing a scenario that can be framed in a Distinct Preference model framework. This study gives new insights on the trophic ecology of the Alpine salamander complex, whose subspecies appear to adopt similar feeding strategies.
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Affiliation(s)
- Emma Centomo
- Ambito Biologia della Conservazione, Ufficio Ricerca e Collezioni, MUSE-Museo delle Scienze, Corso del Lavoro e della Scienza 3, I-38122 Trento, Italy
| | - Luca Roner
- Ambito Biologia della Conservazione, Ufficio Ricerca e Collezioni, MUSE-Museo delle Scienze, Corso del Lavoro e della Scienza 3, I-38122 Trento, Italy
| | - Marco Salvatori
- Ambito Biologia della Conservazione, Ufficio Ricerca e Collezioni, MUSE-Museo delle Scienze, Corso del Lavoro e della Scienza 3, I-38122 Trento, Italy
- Dipartimento di Biologia, Università di Firenze, Via Madonna del Piano 6, I-50019 Firenze, Italy
| | - Paolo Pedrini
- Ambito Biologia della Conservazione, Ufficio Ricerca e Collezioni, MUSE-Museo delle Scienze, Corso del Lavoro e della Scienza 3, I-38122 Trento, Italy
| | - Antonio Romano
- Ambito Biologia della Conservazione, Ufficio Ricerca e Collezioni, MUSE-Museo delle Scienze, Corso del Lavoro e della Scienza 3, I-38122 Trento, Italy
- Consiglio Nazionale delle Ricerche-Istituto per la BioEconomia, Via dei Taurini 19, I-00100 Roma, Italy
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3
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Safaei-Mahroo B, Ghaffari H, Niamir A. A synoptic review of the Amphibians of Iran: bibliography, taxonomy, synonymy, distribution, conservation status, and identification key to the eggs, larvae, and adults. Zootaxa 2023; 5279:1-112. [PMID: 37518755 DOI: 10.11646/zootaxa.5279.1.1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2023] [Indexed: 08/01/2023]
Abstract
This study provides an illustrated account, a comprehensive update of the systematics, and a bibliography of the 15 species of anurans in five families, eight genera; and of the six species of urodeles in two families, four genera in Iran. Bufonidae, with eight species, is the most diverse family; Salamandridae has five species and Ranidae has four species. This study also presents updated identification keys for the eggs, larvae, and metamorphosed amphibians of Iran. We designated specimen NMW 19855.1 as neotype of Pelophylax persicus (Schneider, 1799) comb. nov.. Along with distribution maps obtained from all the reliable localities and museum specimens known at this time, the modelled habitat of species, and for the first time, the National Red List of amphibians based on the IUCN red list categories and criteria. Based on our evaluation we propose to categorize Bufo eichwaldi, Paradactylodon persicus, Neurergus derjugini, and N. kaiseri as Vulnerable at National Red List, and to move Bufotes (Calliopersa) luristanicus, B. (C.) surdus, Firouzophrynus olivaceus, and Rana pseudodalmatina from the category of Least Concern (LC) to Near Threatened (NT). The National Red List of amphibians that we propose has significant implications for endangered species management and conservation. Forty-one percent of amphibian species in Iran are endemic to the country, and more than forty percent of the Iranian amphibians are at risk of extinction. Zagros Mountain forest and Hyrcaniain forests have more than 80% (i.e. 18 species) of the diversity of Iranian amphibians. A considerable amount of scientific literature published on Iranian amphibians in Persian language is not easily accessible to researchers outside Iran. This monograph attempts to remedy the situation and provides broader access to international herpetology. We recognize that taxonomy is always in a state of flux, and the names and synonymies used here reflect our current view.
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Affiliation(s)
| | - Hanyeh Ghaffari
- Department of Environmental Sciences; Faculty of Natural Resources; University of Kurdistan; Sanandaj; Iran.
| | - Aidin Niamir
- Senckenberg Biodiversity and Climate Research Centre; Frankfurt am Main; Germany.
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4
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Genomic insights into rapid speciation within the world's largest tree genus Syzygium. Nat Commun 2022; 13:5031. [PMID: 36097018 PMCID: PMC9468008 DOI: 10.1038/s41467-022-32637-x] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2021] [Accepted: 08/10/2022] [Indexed: 11/09/2022] Open
Abstract
Species radiations, despite immense phenotypic variation, can be difficult to resolve phylogenetically when genetic change poorly matches the rapidity of diversification. Genomic potential furnished by palaeopolyploidy, and relative roles for adaptation, random drift and hybridisation in the apportionment of genetic variation, remain poorly understood factors. Here, we study these aspects in a model radiation, Syzygium, the most species-rich tree genus worldwide. Genomes of 182 distinct species and 58 unidentified taxa are compared against a chromosome-level reference genome of the sea apple, Syzygium grande. We show that while Syzygium shares an ancient genome doubling event with other Myrtales, little evidence exists for recent polyploidy events. Phylogenomics confirms that Syzygium originated in Australia-New Guinea and diversified in multiple migrations, eastward to the Pacific and westward to India and Africa, in bursts of speciation visible as poorly resolved branches on phylogenies. Furthermore, some sublineages demonstrate genomic clines that recapitulate cladogenetic events, suggesting that stepwise geographic speciation, a neutral process, has been important in Syzygium diversification.
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Abstract
The polar bear (Ursus maritimus) has become a symbol of the threat to biodiversity from climate change. Understanding polar bear evolutionary history may provide insights into apex carnivore responses and prospects during periods of extreme environmental perturbations. In recent years, genomic studies have examined bear speciation and population history, including evidence for ancient admixture between polar bears and brown bears (Ursus arctos). Here, we extend our earlier studies of a 130,000- to 115,000-y-old polar bear from the Svalbard Archipelago using a 10× coverage genome sequence and 10 new genomes of polar and brown bears from contemporary zones of overlap in northern Alaska. We demonstrate a dramatic decline in effective population size for this ancient polar bear’s lineage, followed by a modest increase just before its demise. A slightly higher genetic diversity in the ancient polar bear suggests a severe genetic erosion over a prolonged bottleneck in modern polar bears. Statistical fitting of data to alternative admixture graph scenarios favors at least one ancient introgression event from brown bears into the ancestor of polar bears, possibly dating back over 150,000 y. Gene flow was likely bidirectional, but allelic transfer from brown into polar bear is the strongest detected signal, which contrasts with other published work. These findings may have implications for our understanding of climate change impacts: Polar bears, a specialist Arctic lineage, may not only have undergone severe genetic bottlenecks but also been the recipient of generalist, boreal genetic variants from brown bears during critical phases of Northern Hemisphere glacial oscillations.
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6
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Arntzen JW. The Midwife Toad Challenge After (Half) a Century. Front Ecol Evol 2022. [DOI: 10.3389/fevo.2022.819542] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022] Open
Abstract
The evolutionary biologist Paul Kammerer (1880–1926) purportedly demonstrated that environmentally induced character states are carried over to the next generation(s), therewith providing evidence for Lamarckian evolution. Kammerer’s work is generally seen as contentious but has also been valued as daring and insightful, and Kammerer has been heralded as an academic forebear of epigenetics. Most of the more pertinent of Kammerer’s experiments on amphibians and the sea squirt have either been invalidated by replications that failed, or have been dismissed as virtually impossible. An experiment on color pattern change in the fire salamander stands out because it has been confirmed, but only with data for within a generation, so that Kammerer’s claim concerning the inheritance of acquired character states still awaits confirmation. To facilitate and encourage replicate studies, I draw attention to species and populations that would be most practical and promising to work with, for those that are into the challenge.
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Lyra ML, Monteiro JPC, Rancilhac L, Irisarri I, Künzel S, Sanchez E, Condez TH, Rojas-Padilla O, Solé M, Toledo LF, Haddad CFB, Vences M. Initial Phylotranscriptomic Confirmation of Homoplastic Evolution of the Conspicuous Coloration and Bufoniform Morphology of Pumpkin-Toadlets in the Genus Brachycephalus. Toxins (Basel) 2021; 13:816. [PMID: 34822600 PMCID: PMC8620806 DOI: 10.3390/toxins13110816] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/03/2021] [Revised: 11/12/2021] [Accepted: 11/15/2021] [Indexed: 02/03/2023] Open
Abstract
The genus Brachycephalus is a fascinating group of miniaturized anurans from the Brazilian Atlantic Forest, comprising the conspicuous, brightly colored pumpkin-toadlets and the cryptic flea-toads. Pumpkin-toadlets are known to contain tetrodotoxins and therefore, their bright colors may perform an aposematic function. Previous studies based on a limited number of mitochondrial and nuclear-encoded markers supported the existence of two clades containing species of pumpkin-toadlet phenotype, but deep nodes remained largely unresolved or conflicting between data sets. We use new RNAseq data of 17 individuals from nine Brachycephalus species to infer their evolutionary relationships from a phylogenomic perspective. Analyses of almost 5300 nuclear-encoded ortholog protein-coding genes and full mitochondrial genomes confirmed the existence of two separate pumpkin-toadlet clades, suggesting the convergent evolution (or multiple reversals) of the bufoniform morphology, conspicuous coloration, and probably toxicity. In addition, the study of the mitochondrial gene order revealed that three species (B. hermogenesi, B. pitanga, and B. rotenbergae) display translocations of different tRNAs (NCY and CYA) from the WANCY tRNA cluster to a position between the genes ATP6 and COIII, showing a new mitochondrial gene order arrangement for vertebrates. The newly clarified phylogeny suggests that Brachycephalus has the potential to become a promising model taxon to understand the evolution of coloration, body plan and toxicity. Given that toxicity information is available for only few species of Brachycephalus, without data for any flea-toad species, we also emphasize the need for a wider screening of toxicity across species, together with more in-depth functional and ecological study of their phenotypes.
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Affiliation(s)
- Mariana L. Lyra
- Instituto de Biociências, Departamento de Biodiversidade (Campus Rio Claro), Universidade Estadual Paulista (UNESP), Avenida 24A, N 1515, Bela Vista, Rio Claro 13506-900, SP, Brazil; (M.L.L.); (J.P.C.M.); (C.F.B.H.)
| | - Juliane P. C. Monteiro
- Instituto de Biociências, Departamento de Biodiversidade (Campus Rio Claro), Universidade Estadual Paulista (UNESP), Avenida 24A, N 1515, Bela Vista, Rio Claro 13506-900, SP, Brazil; (M.L.L.); (J.P.C.M.); (C.F.B.H.)
| | - Loïs Rancilhac
- Zoological Institute, Technische Universität Braunschweig, 38106 Braunschweig, Germany; (L.R.); (E.S.)
| | - Iker Irisarri
- Institute for Microbiology and Genetics, Department of Applied Bioinformatics, University of Goettingen, Goldschmidtstr, 1, 37077 Göttingen, Germany;
| | - Sven Künzel
- Max Planck Institute for Evolutionary Biology, 24306 Plön, Germany;
| | - Eugenia Sanchez
- Zoological Institute, Technische Universität Braunschweig, 38106 Braunschweig, Germany; (L.R.); (E.S.)
| | - Thais H. Condez
- Unidade Passos, Universidade do Estado de Minas Gerais (UEMG), Avenida Juca Stockler 1130, Passos 37900-106, MG, Brazil;
| | - Omar Rojas-Padilla
- Laboratório de Sistemática de Vertebrados, Pontifícia Universidade Católica do Rio Grande do Sul, Av. Ipiranga 6681, Porto Alegre 90619-900, RS, Brazil;
| | - Mirco Solé
- Departamento de Ciências Biológicas, Universidade Estadual de Santa Cruz, Ilhéus 45662-900, BA, Brazil;
| | - Luís Felipe Toledo
- Laboratório de História Natural de Anfíbios Brasileiros (LaHNAB), Departamento de Biologia Animal, Instituto de Biologia, Universidade Estadual de Campinas, Campinas 13083-862, SP, Brazil;
| | - Célio F. B. Haddad
- Instituto de Biociências, Departamento de Biodiversidade (Campus Rio Claro), Universidade Estadual Paulista (UNESP), Avenida 24A, N 1515, Bela Vista, Rio Claro 13506-900, SP, Brazil; (M.L.L.); (J.P.C.M.); (C.F.B.H.)
| | - Miguel Vences
- Zoological Institute, Technische Universität Braunschweig, 38106 Braunschweig, Germany; (L.R.); (E.S.)
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8
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van Riemsdijk I, Arntzen JW, Babik W, Bogaerts S, Franzen M, Kalaentzis K, Litvinchuk SN, Olgun K, Wijnands JWPM, Wielstra B. Next-generation phylogeography of the banded newts (Ommatotriton): A phylogenetic hypothesis for three ancient species with geographically restricted interspecific gene flow and deep intraspecific genetic structure. Mol Phylogenet Evol 2021; 167:107361. [PMID: 34775056 DOI: 10.1016/j.ympev.2021.107361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Revised: 11/04/2021] [Accepted: 11/09/2021] [Indexed: 10/19/2022]
Abstract
Technological developments now make it possible to employ many markers for many individuals in a phylogeographic setting, even for taxa with large and complex genomes such as salamanders. The banded newt (genus Ommatotriton) from the Near East has been proposed to contain three species (O. nesterovi, O. ophryticus and O. vittatus) with unclear phylogenetic relationships, apparently limited interspecific gene flow and deep intraspecific geographic mtDNA structure. We use parallel tagged amplicon sequencing to obtain 177 nuclear DNA markers for 35 banded newts sampled throughout the range. We determine population structure (with Bayesian clustering and principal component analysis), interspecific gene flow (by determining the distribution of species-diagnostic alleles) and phylogenetic relationships (by maximum likelihood inference of concatenated sequence data and based on a summary-coalescent approach). We confirm that the three proposed species are genetically distinct. A sister relationship between O. nesterovi and O. ophryticus is suggested. We find evidence for introgression between O. nesterovi and O. ophryticus, but this is geographically limited. Intraspecific structuring is extensive, with the only recognized banded newt subspecies, O. vittatus cilicensis, representing the most distinct lineage below the species level. While mtDNA mostly mirrors the pattern observed in nuclear DNA, all banded newt species show mito-nuclear discordance as well.
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Affiliation(s)
- Isolde van Riemsdijk
- Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, the Netherlands; Institute of Biology Leiden, Leiden University, P.O. Box 9505, 2300 RA Leiden, the Netherlands; Institute for Evolution and Ecology, Auf der Morgenstelle 5, D-72076, Tübingen University, Tübingen, Germany
| | - Jan W Arntzen
- Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, the Netherlands; Institute of Biology Leiden, Leiden University, P.O. Box 9505, 2300 RA Leiden, the Netherlands
| | - Wiesław Babik
- Institute of Environmental Sciences, Jagiellonian University, ul. Gronostajowa 7, 30-387 Kraków, Poland
| | | | - Michael Franzen
- Zoologische Staatssammlung München (ZSM-SNSB), Münchhausenstraße 21, 81247 München, Germany
| | - Konstantinos Kalaentzis
- Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, the Netherlands; Institute of Biology Leiden, Leiden University, P.O. Box 9505, 2300 RA Leiden, the Netherlands
| | - Spartak N Litvinchuk
- Institute of Cytology, Russian Academy of Sciences, Tikhoretsky pr. 4, 194064 St. Petersburg, Russia
| | - Kurtuluş Olgun
- Department of Biology, Faculty of Arts and Sciences, Adnan Menderes University, 09010 Aydın, Turkey
| | - Jan Willem P M Wijnands
- Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, the Netherlands; Institute of Biology Leiden, Leiden University, P.O. Box 9505, 2300 RA Leiden, the Netherlands
| | - Ben Wielstra
- Naturalis Biodiversity Center, P.O. Box 9517, 2300 RA Leiden, the Netherlands; Institute of Biology Leiden, Leiden University, P.O. Box 9505, 2300 RA Leiden, the Netherlands.
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9
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Mulder KP, Alarcón-Ríos L, Nicieza AG, Fleischer RC, Bell RC, Velo-Antón G. Independent evolutionary transitions to pueriparity across multiple timescales in the viviparous genus Salamandra. Mol Phylogenet Evol 2021; 167:107347. [PMID: 34763070 DOI: 10.1016/j.ympev.2021.107347] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2021] [Revised: 10/21/2021] [Accepted: 11/03/2021] [Indexed: 02/07/2023]
Abstract
The ability to bear live offspring, viviparity, has evolved multiple times across the tree of life and is a remarkable adaptation with profound life-history and ecological implications. Within amphibians the ancestral reproductive mode is oviparity followed by a larval life stage, but viviparity has evolved independently in all three amphibian orders. Two types of viviparous reproduction can be distinguished in amphibians; larviparity and pueriparity. Larviparous amphibians deliver larvae into nearby ponds and streams, while pueriparous amphibians deliver fully developed juveniles and thus do not require waterbodies for reproduction. Among amphibians, the salamander genus Salamandra is remarkable as it exhibits both inter- and intraspecific variation in the occurrence of larviparity and pueriparity. While the evolutionary relationships among Salamandra lineages have been the focus of several recent studies, our understanding of how often and when transitions between modes occurred is still incomplete. Furthermore, in species with intraspecific variation, the reproductive mode of a given population can only be confirmed by direct observation of births and thus the prevalence of pueriparous populations is also incompletely documented. We used sequence capture to obtain 1,326 loci from 94 individuals from across the geographic range of the genus, focusing on potential reproductive mode transition zones. We also report additional direct observations of pueriparous births for 20 new locations and multiple lineages. We identify at least five independent transitions from the ancestral mode of larviparity to pueriparity among and within species, occurring at different evolutionary timescales ranging from the Pliocene to the Holocene. Four of these transitions occurred within species. Based on a distinct set of markers and analyses, we also confirm previous findings of introgression between species and the need for taxonomic revisions in the genus. We discuss the implications of our findings with respect to the evolution of this complex trait, and the potential of using five independent convergent transitions for further studies on the ecological context in which pueriparity evolves and the genetic architecture of this specialized reproductive mode.
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Affiliation(s)
- Kevin P Mulder
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, 4485-661 Vairão, Portugal; BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, 4485-661 Vairão, Portugal; Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, 1000 Constitution Avenue NW, Washington, DC 20560, USA; Center for Conservation Genomics, Smithsonian Conservation Biology Institute, National Zoological Park, 3001 Connecticut Avenue NW, Washington, DC 20008, USA.
| | - Lucía Alarcón-Ríos
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, 4485-661 Vairão, Portugal; BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, 4485-661 Vairão, Portugal; Departamento de Biología de Organismos y Sistemas, Universidad de Oviedo UO, Oviedo, Spain
| | - Alfredo G Nicieza
- Departamento de Biología de Organismos y Sistemas, Universidad de Oviedo UO, Oviedo, Spain; Biodiversity Research Institute (IMIB), University of Oviedo-Principality of Asturias-CSIC, 33600 Mieres, Spain
| | - Robert C Fleischer
- Center for Conservation Genomics, Smithsonian Conservation Biology Institute, National Zoological Park, 3001 Connecticut Avenue NW, Washington, DC 20008, USA
| | - Rayna C Bell
- Department of Vertebrate Zoology, National Museum of Natural History, Smithsonian Institution, 1000 Constitution Avenue NW, Washington, DC 20560, USA; Herpetology Department, California Academy of Sciences, 55 Music Concourse Drive, San Francisco, CA 94118, USA
| | - Guillermo Velo-Antón
- CIBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, InBIO Laboratório Associado, Campus de Vairão, Universidade do Porto, 4485-661 Vairão, Portugal; BIOPOLIS Program in Genomics, Biodiversity and Land Planning, CIBIO, Campus de Vairão, 4485-661 Vairão, Portugal; Universidade de Vigo, Grupo GEA, Departamento de Ecoloxía e Bioloxía Animal, Vigo, Spain.
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10
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Potential changes in the distributions of Near Eastern fire salamander (Salamandra infraimmaculata) in response to historical, recent and future climate change in the Near and Middle East: Implication for conservation and management. Glob Ecol Conserv 2021. [DOI: 10.1016/j.gecco.2021.e01730] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/19/2023] Open
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11
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Pizzigalli C, Crochet P, Geniez P, Martínez‐Freiría F, Velo‐Antón G, Carlos Brito J. Phylogeographic diversification of the
Mesalina olivieri
species complex (Squamata: Lacertidae) with the description of a new species and a new subspecies endemic from North West Africa. J ZOOL SYST EVOL RES 2021. [DOI: 10.1111/jzs.12516] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Cristian Pizzigalli
- CIBIO/InBIO Centro de Investigação em Biodiversidade e Recursos Genéticos da Universidade do Porto Vairão Portugal
- Departamento de Biologia da Faculdade de Ciências da Universidade do Porto Porto Portugal
| | - Pierre‐André Crochet
- CEFE CNRS Univ Montpellier EPHE IRD Univ Paul Valéry Montpellier 3 Montpellier France
| | - Philippe Geniez
- CEFE Univ Montpellier CNRS EPHE‐PSL University IRD Univ Paul Valéry Montpellier 3Biogéographie et Ecologie des Vertébrés Montpellier France
| | - Fernando Martínez‐Freiría
- CIBIO/InBIO Centro de Investigação em Biodiversidade e Recursos Genéticos da Universidade do Porto Vairão Portugal
| | - Guillermo Velo‐Antón
- CIBIO/InBIO Centro de Investigação em Biodiversidade e Recursos Genéticos da Universidade do Porto Vairão Portugal
| | - José Carlos Brito
- CIBIO/InBIO Centro de Investigação em Biodiversidade e Recursos Genéticos da Universidade do Porto Vairão Portugal
- Departamento de Biologia da Faculdade de Ciências da Universidade do Porto Porto Portugal
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12
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Bosch J, Martel A, Sopniewski J, Thumsová B, Ayres C, Scheele BC, Velo-Antón G, Pasmans F. Batrachochytrium salamandrivorans Threat to the Iberian Urodele Hotspot. J Fungi (Basel) 2021; 7:jof7080644. [PMID: 34436183 PMCID: PMC8400424 DOI: 10.3390/jof7080644] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Revised: 08/02/2021] [Accepted: 08/05/2021] [Indexed: 12/17/2022] Open
Abstract
The recent introduction of the chytrid fungus Batrachochytrium salamandrivorans into northeastern Spain threatens salamander diversity on the Iberian Peninsula. We assessed the current epidemiological situation with extensive field sampling of urodele populations. We then sought to delineate priority regions and identify conservation units for the Iberian Peninsula by estimating the susceptibility of Iberian urodeles using laboratory experiments, evidence from mortality events in nature and captivity and inference from phylogeny. None of the 1395 field samples, collected between 2015 and 2021 were positive for Bsal and no Bsal-associated mortality events were recorded, in contrast to the confirmed occurrence of Bsal outbreak previously described in 2018. We classified five of eleven Iberian urodele species as highly susceptible, predicting elevated mortality and population declines following potential Bsal emergence in the wild, five species as intermediately susceptible with variable disease outcomes and one species as resistant to disease and mortality. We identified the six conservation units (i.e., species or lineages within species) at highest risk and propose priority areas for active disease surveillance and field biosecurity measures. The magnitude of the disease threat identified here emphasizes the need for region-tailored disease abatement plans that couple active disease surveillance to rapid and drastic actions.
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Affiliation(s)
- Jaime Bosch
- Biodiversity Research Institute (IMIB), University of Oviedo-Principality of Asturias-CSIC, 33600 Mieres, Spain;
- Museo Nacional de Ciencias Naturales-CSIC, 28006 Madrid, Spain
- Correspondence: ; Tel.: +34-6-777-724-02
| | - An Martel
- Wildlife Health Ghent, Department of Pathology, Bacteriology and Poultry Diseases, Ghent University, B9820 Merelbeke, Belgium; (A.M.); (F.P.)
| | - Jarrod Sopniewski
- Fenner School of Environment and Society, Australian National University, Canberra 2601, Australia; (J.S.); (B.C.S.)
| | - Barbora Thumsová
- Biodiversity Research Institute (IMIB), University of Oviedo-Principality of Asturias-CSIC, 33600 Mieres, Spain;
- Museo Nacional de Ciencias Naturales-CSIC, 28006 Madrid, Spain
- Asociación Herpetologica Española, 28006 Madrid, Spain;
| | - Cesar Ayres
- Asociación Herpetologica Española, 28006 Madrid, Spain;
| | - Ben C. Scheele
- Fenner School of Environment and Society, Australian National University, Canberra 2601, Australia; (J.S.); (B.C.S.)
| | - Guillermo Velo-Antón
- CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos, Universidade do Porto, 4485-661 Vairão, Portugal;
- Grupo GEA, Departamento de Ecoloxía e Bioloxía Animal, Universidade de Vigo, 36310 Vigo, Spain
| | - Frank Pasmans
- Wildlife Health Ghent, Department of Pathology, Bacteriology and Poultry Diseases, Ghent University, B9820 Merelbeke, Belgium; (A.M.); (F.P.)
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Kiss I, Hamer AJ, Vörös J. Life history modelling reveals trends in fitness and apparent survival of an isolated Salamandra salamandra population in an urbanised landscape. EUR J WILDLIFE RES 2021. [DOI: 10.1007/s10344-021-01521-2] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Brejcha J, kodejš K, Benda P, Jablonski D, Holer T, Chmelař J, Moravec J. Variability of colour pattern and genetic diversity of Salamandra salamandra (Caudata: Salamandridae) in the Czech Republic. JOURNAL OF VERTEBRATE BIOLOGY 2021. [DOI: 10.25225/jvb.21016] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Affiliation(s)
- Jindřich Brejcha
- Department of Zoology, National Museum, Praha-Horní Počernice, Czech Republic; e-mail:
| | - Karel kodejš
- Department of Zoology, National Museum, Praha-Horní Počernice, Czech Republic; e-mail:
| | - Pavel Benda
- Bohemian Switzerland National Park, Krásná Lípa, Czech Republic
| | - Daniel Jablonski
- Department of Zoology, Comenius University in Bratislava, Bratislava, Slovakia
| | - Tomáš Holer
- Department of Ecology, Faculty of Environmental Sciences, Czech University of Life Sciences Prague, Praha-Suchdol, Czech Republic
| | - Jan Chmelař
- Department of Zoology, Faculty of Science, Charles University, Praha, Czech Republic
| | - Jiří Moravec
- Department of Zoology, National Museum, Praha-Horní Počernice, Czech Republic; e-mail:
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Physical and ecological isolation contribute to maintain genetic differentiation between fire salamander subspecies. Heredity (Edinb) 2021; 126:776-789. [PMID: 33536637 PMCID: PMC8102559 DOI: 10.1038/s41437-021-00405-0] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Revised: 01/05/2021] [Accepted: 01/05/2021] [Indexed: 01/30/2023] Open
Abstract
Landscape features shape patterns of gene flow among populations, ultimately determining where taxa lay along the continuum between panmixia to complete reproductive isolation. Gene flow can be restricted, leading to population differentiation in two non-exclusive ways: "physical isolation", in which geographic distance in combination with the landscape features restricts movement of individuals promoting genetic drift, and "ecological isolation", in which adaptive mechanisms constrain gene flow between different environments via divergent natural selection. In central Iberia, two fire salamander subspecies occur in parapatry across elevation gradients along the Iberian Central System mountains, while in the adjacent Montes de Toledo Region only one of them occurs. By integrating population and landscape genetic analyses, we show a ubiquitous role of physical isolation between and within mountain ranges, with unsuitable landscapes increasing differentiation between populations. However, across the Iberian Central System, we found strong support for a significant contribution of ecological isolation, with low genetic differentiation in environmentally homogeneous areas, but high differentiation across sharp transitions in precipitation seasonality. These patterns are consistent with a significant contribution of ecological isolation in restricting gene flow among subspecies. Overall, our results suggest that ecological divergence contributes to reduce genetic admixture, creating an opportunity for lineages to follow distinct evolutionary trajectories.
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Velo-Antón G, Lourenço A, Galán P, Nicieza A, Tarroso P. Landscape resistance constrains hybridization across contact zones in a reproductively and morphologically polymorphic salamander. Sci Rep 2021; 11:9259. [PMID: 33927228 PMCID: PMC8085075 DOI: 10.1038/s41598-021-88349-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/05/2021] [Accepted: 04/07/2021] [Indexed: 02/02/2023] Open
Abstract
Explicitly accounting for phenotypic differentiation together with environmental heterogeneity is crucial to understand the evolutionary dynamics in hybrid zones. Species showing intra-specific variation in phenotypic traits that meet across environmentally heterogeneous regions constitute excellent natural settings to study the role of phenotypic differentiation and environmental factors in shaping the spatial extent and patterns of admixture in hybrid zones. We studied three environmentally distinct contact zones where morphologically and reproductively divergent subspecies of Salamandra salamandra co-occur: the pueriparous S. s. bernardezi that is mostly parapatric to its three larviparous subspecies neighbours. We used a landscape genetics framework to: (i) characterise the spatial location and extent of each contact zone; (ii) assess patterns of introgression and hybridization between subspecies pairs; and (iii) examine the role of environmental heterogeneity in the evolutionary dynamics of hybrid zones. We found high levels of introgression between parity modes, and between distinct phenotypes, thus demonstrating the evolution to pueriparity alone or morphological differentiation do not lead to reproductive isolation between these highly divergent S. salamandra morphotypes. However, we detected substantial variation in patterns of hybridization across contact zones, being lower in the contact zone located on a topographically complex area. We highlight the importance of accounting for spatial environmental heterogeneity when studying evolutionary dynamics of hybrid zones.
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Affiliation(s)
- Guillermo Velo-Antón
- grid.5808.50000 0001 1503 7226CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos da Universidade do Porto, Instituto de Ciências Agrárias de Vairão. R. Padre Armando Quintas, 4485-661 Vairão, Portugal ,grid.6312.60000 0001 2097 6738Universidade de Vigo, Grupo de Ecoloxía Animal, Departamento de Ecoloxía e Bioloxía Animal, Torre Cacti (Lab 97), 36310 Vigo, Spain
| | - André Lourenço
- grid.5808.50000 0001 1503 7226CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos da Universidade do Porto, Instituto de Ciências Agrárias de Vairão. R. Padre Armando Quintas, 4485-661 Vairão, Portugal ,grid.5808.50000 0001 1503 7226Departamento de Biologia da Faculdade de Ciências, Universidade do Porto. Rua Campo Alegre, 4169-007 Porto, Portugal
| | - Pedro Galán
- grid.8073.c0000 0001 2176 8535Grupo de Investigación en Bioloxía Evolutiva (GIBE), Departamento de Bioloxía, Facultade de Ciencias, Universidade da Coruña, Campus da Zapateira, s/n, 15071 A Coruña, Spain
| | - Alfredo Nicieza
- grid.10863.3c0000 0001 2164 6351Departamento de Biologıa de Organismos y Sistemas, Universidad de Oviedo, Oviedo, Spain ,grid.10863.3c0000 0001 2164 6351Unidad Mixta de Investigacion en Biodiversidad (UMIB), CSIC-Universidad de Oviedo-Principado de Asturias, Mieres, Spain
| | - Pedro Tarroso
- grid.5808.50000 0001 1503 7226CIBIO/InBIO, Centro de Investigação em Biodiversidade e Recursos Genéticos da Universidade do Porto, Instituto de Ciências Agrárias de Vairão. R. Padre Armando Quintas, 4485-661 Vairão, Portugal
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Figueiredo-Vázquez C, Lourenço A, Velo-Antón G. Riverine barriers to gene flow in a salamander with both aquatic and terrestrial reproduction. Evol Ecol 2021. [DOI: 10.1007/s10682-021-10114-z] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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