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For: Lin-Chao S, Wong T, McDowall K, Cohen S. Effects of nucleotide sequence on the specificity of rne-dependent and RNase E-mediated cleavages of RNA I encoded by the pBR322 plasmid. J Biol Chem 1994. [DOI: 10.1016/s0021-9258(17)34130-3] [Citation(s) in RCA: 90] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]  Open
Number Cited by Other Article(s)
1
Taggart J, Dierksheide K, LeBlanc H, Lalanne JB, Durand S, Braun F, Condon C, Li GW. A high-resolution view of RNA endonuclease cleavage in Bacillus subtilis. Nucleic Acids Res 2025;53:gkaf030. [PMID: 39883015 PMCID: PMC11780869 DOI: 10.1093/nar/gkaf030] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2024] [Revised: 01/03/2025] [Accepted: 01/17/2025] [Indexed: 01/31/2025]  Open
2
Banerjee T, Rothenberg E, Belasco JG. RNase E searches for cleavage sites in RNA by linear diffusion: direct evidence from single-molecule FRET. Nucleic Acids Res 2024;52:6674-6686. [PMID: 38647084 PMCID: PMC11194081 DOI: 10.1093/nar/gkae279] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2024] [Revised: 03/24/2024] [Accepted: 04/06/2024] [Indexed: 04/25/2024]  Open
3
Zhou Y, Sun H, Rapiejko AR, Vargas-Blanco DA, Martini MC, Chase MR, Joubran SR, Davis AB, Dainis JP, Kelly JM, Ioerger TR, Roberts LA, Fortune SM, Shell SS. Mycobacterial RNase E cleaves with a distinct sequence preference and controls the degradation rates of most Mycolicibacterium smegmatis mRNAs. J Biol Chem 2023;299:105312. [PMID: 37802316 PMCID: PMC10641625 DOI: 10.1016/j.jbc.2023.105312] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Revised: 08/29/2023] [Accepted: 09/29/2023] [Indexed: 10/08/2023]  Open
4
Relaxed Cleavage Specificity of Hyperactive Variants of Escherichia coli RNase E on RNA I. J Microbiol 2023;61:211-220. [PMID: 36814003 DOI: 10.1007/s12275-023-00013-z] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 12/26/2022] [Accepted: 12/27/2022] [Indexed: 02/24/2023]
5
Richards J, Belasco JG. Graded impact of obstacle size on scanning by RNase E. Nucleic Acids Res 2023;51:1364-1374. [PMID: 36620905 PMCID: PMC9943677 DOI: 10.1093/nar/gkac1242] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2022] [Revised: 12/11/2022] [Accepted: 12/13/2022] [Indexed: 01/10/2023]  Open
6
Zhang J, Hess WR, Zhang C. "Life is short, and art is long": RNA degradation in cyanobacteria and model bacteria. MLIFE 2022;1:21-39. [PMID: 38818322 PMCID: PMC10989914 DOI: 10.1002/mlf2.12015] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/08/2022] [Revised: 03/03/2022] [Accepted: 03/03/2022] [Indexed: 06/01/2024]
7
Hui MP, Belasco JG. Multifaceted impact of a nucleoside monophosphate kinase on 5'-end-dependent mRNA degradation in bacteria. Nucleic Acids Res 2021;49:11038-11049. [PMID: 34643703 PMCID: PMC8565310 DOI: 10.1093/nar/gkab884] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2021] [Revised: 09/14/2021] [Accepted: 10/06/2021] [Indexed: 11/13/2022]  Open
8
Substrate-dependent effects of quaternary structure on RNase E activity. Genes Dev 2021;35:286-299. [PMID: 33446571 PMCID: PMC7849360 DOI: 10.1101/gad.335828.119] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/05/2019] [Accepted: 12/15/2020] [Indexed: 11/25/2022]
9
Angel-Lerma LE, Merino E, Kwon O, Medina-Aparicio L, Hernández-Lucas I, Alvarez AF, Georgellis D. Protein dosage of the lldPRD operon is correlated with RNase E-dependent mRNA processing. J Bacteriol 2020;203:JB.00555-20. [PMID: 33361194 PMCID: PMC8095457 DOI: 10.1128/jb.00555-20] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/06/2020] [Accepted: 12/16/2020] [Indexed: 11/20/2022]  Open
10
Richards J, Belasco JG. Widespread Protection of RNA Cleavage Sites by a Riboswitch Aptamer that Folds as a Compact Obstacle to Scanning by RNase E. Mol Cell 2020;81:127-138.e4. [PMID: 33212019 DOI: 10.1016/j.molcel.2020.10.025] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2020] [Revised: 10/14/2020] [Accepted: 10/15/2020] [Indexed: 12/26/2022]
11
Yan H, Cheng Y, Wang L, Chen W. Function analysis of RNase E in the filamentous cyanobacterium Anabaena sp. PCC 7120. Res Microbiol 2020;171:194-202. [PMID: 32590060 DOI: 10.1016/j.resmic.2020.06.001] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2020] [Revised: 05/30/2020] [Accepted: 06/03/2020] [Indexed: 10/24/2022]
12
Both Enolase and the DEAD-Box RNA Helicase CrhB Can Form Complexes with RNase E in Anabaena sp. Strain PCC 7120. Appl Environ Microbiol 2020;86:AEM.00425-20. [PMID: 32303553 DOI: 10.1128/aem.00425-20] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Accepted: 04/14/2020] [Indexed: 11/20/2022]  Open
13
Bechhofer DH, Deutscher MP. Bacterial ribonucleases and their roles in RNA metabolism. Crit Rev Biochem Mol Biol 2019;54:242-300. [PMID: 31464530 PMCID: PMC6776250 DOI: 10.1080/10409238.2019.1651816] [Citation(s) in RCA: 117] [Impact Index Per Article: 19.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2019] [Revised: 07/22/2019] [Accepted: 07/31/2019] [Indexed: 12/16/2022]
14
Richards J, Belasco JG. Obstacles to Scanning by RNase E Govern Bacterial mRNA Lifetimes by Hindering Access to Distal Cleavage Sites. Mol Cell 2019;74:284-295.e5. [PMID: 30852060 DOI: 10.1016/j.molcel.2019.01.044] [Citation(s) in RCA: 36] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2018] [Revised: 12/11/2018] [Accepted: 01/29/2019] [Indexed: 12/27/2022]
15
Belasco JG. Ribonuclease E: Chopping Knife and Sculpting Tool. Mol Cell 2017;65:3-4. [PMID: 28061331 DOI: 10.1016/j.molcel.2016.12.015] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
16
Luciano DJ, Vasilyev N, Richards J, Serganov A, Belasco JG. A Novel RNA Phosphorylation State Enables 5' End-Dependent Degradation in Escherichia coli. Mol Cell 2017;67:44-54.e6. [PMID: 28673541 DOI: 10.1016/j.molcel.2017.05.035] [Citation(s) in RCA: 63] [Impact Index Per Article: 7.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/09/2016] [Revised: 04/10/2017] [Accepted: 05/26/2017] [Indexed: 01/08/2023]
17
Exoribonucleases and Endoribonucleases. EcoSal Plus 2015;1. [PMID: 26443351 DOI: 10.1128/ecosalplus.4.6.3] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/25/2023]
18
Kushwaha M, Salis HM. A portable expression resource for engineering cross-species genetic circuits and pathways. Nat Commun 2015;6:7832. [PMID: 26184393 PMCID: PMC4518296 DOI: 10.1038/ncomms8832] [Citation(s) in RCA: 98] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2015] [Accepted: 06/16/2015] [Indexed: 12/24/2022]  Open
19
TheCorynebacterium glutamicumNCgl2281 Gene Encoding an RNase E/G Family Endoribonuclease Can Complement theEscherichia coli rng::catMutation but Not therne-1Mutation. Biosci Biotechnol Biochem 2014;73:2281-6. [DOI: 10.1271/bbb.90371] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
20
Kim D, Song S, Lee M, Go H, Shin E, Yeom JH, Ha NC, Lee K, Kim YH. Modulation of RNase E activity by alternative RNA binding sites. PLoS One 2014;9:e90610. [PMID: 24598695 PMCID: PMC3944109 DOI: 10.1371/journal.pone.0090610] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/21/2013] [Accepted: 02/02/2014] [Indexed: 12/18/2022]  Open
21
Initiation of mRNA decay in bacteria. Cell Mol Life Sci 2013;71:1799-828. [PMID: 24064983 PMCID: PMC3997798 DOI: 10.1007/s00018-013-1472-4] [Citation(s) in RCA: 102] [Impact Index Per Article: 8.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2013] [Revised: 09/01/2013] [Accepted: 09/03/2013] [Indexed: 12/24/2022]
22
An advanced monitoring platform for rational design of recombinant processes. ADVANCES IN BIOCHEMICAL ENGINEERING/BIOTECHNOLOGY 2012. [PMID: 23207722 DOI: 10.1007/10_2012_169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register]
23
Maeda T, Wachi M. 3' Untranslated region-dependent degradation of the aceA mRNA, encoding the glyoxylate cycle enzyme isocitrate lyase, by RNase E/G in Corynebacterium glutamicum. Appl Environ Microbiol 2012;78:8753-61. [PMID: 23042181 PMCID: PMC3502937 DOI: 10.1128/aem.02304-12] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2012] [Accepted: 10/02/2012] [Indexed: 11/20/2022]  Open
24
Membrane binding of Escherichia coli RNase E catalytic domain stabilizes protein structure and increases RNA substrate affinity. Proc Natl Acad Sci U S A 2012;109:7019-24. [PMID: 22509045 DOI: 10.1073/pnas.1120181109] [Citation(s) in RCA: 28] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
25
From conformational chaos to robust regulation: the structure and function of the multi-enzyme RNA degradosome. Q Rev Biophys 2011;45:105-45. [DOI: 10.1017/s003358351100014x] [Citation(s) in RCA: 63] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
26
Laalami S, Putzer H. mRNA degradation and maturation in prokaryotes: the global players. Biomol Concepts 2011;2:491-506. [DOI: 10.1515/bmc.2011.042] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2011] [Accepted: 08/26/2011] [Indexed: 11/15/2022]  Open
27
Maeda T, Wachi M. Corynebacterium glutamicum RNase E/G-type endoribonuclease encoded by NCgl2281 is involved in the 5′ maturation of 5S rRNA. Arch Microbiol 2011;194:65-73. [DOI: 10.1007/s00203-011-0728-3] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2011] [Revised: 06/06/2011] [Accepted: 06/14/2011] [Indexed: 11/25/2022]
28
Lee M, Yeom JH, Jeon CO, Lee K. Studies on a Vibrio vulnificus functional ortholog of Escherichia coli RNase E imply a conserved function of RNase E-like enzymes in bacteria. Curr Microbiol 2010;62:861-5. [PMID: 21046401 DOI: 10.1007/s00284-010-9771-6] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/16/2010] [Accepted: 09/14/2010] [Indexed: 10/18/2022]
29
Kime L, Jourdan SS, Stead JA, Hidalgo-Sastre A, McDowall KJ. Rapid cleavage of RNA by RNase E in the absence of 5' monophosphate stimulation. Mol Microbiol 2010;76:590-604. [PMID: 19889093 PMCID: PMC2948425 DOI: 10.1111/j.1365-2958.2009.06935.x] [Citation(s) in RCA: 66] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/18/2009] [Indexed: 11/28/2022]
30
Jourdan SS, Kime L, McDowall KJ. The sequence of sites recognised by a member of the RNase E/G family can control the maximal rate of cleavage, while a 5'-monophosphorylated end appears to function cooperatively in mediating RNA binding. Biochem Biophys Res Commun 2009;391:879-83. [PMID: 19945430 DOI: 10.1016/j.bbrc.2009.11.156] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/11/2009] [Accepted: 11/21/2009] [Indexed: 11/16/2022]
31
Regulation of ribonuclease E activity by the L4 ribosomal protein of Escherichia coli. Proc Natl Acad Sci U S A 2009;106:864-9. [PMID: 19144914 DOI: 10.1073/pnas.0810205106] [Citation(s) in RCA: 65] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
32
Carpousis AJ, Luisi BF, McDowall KJ. Endonucleolytic initiation of mRNA decay in Escherichia coli. PROGRESS IN MOLECULAR BIOLOGY AND TRANSLATIONAL SCIENCE 2009;85:91-135. [PMID: 19215771 DOI: 10.1016/s0079-6603(08)00803-9] [Citation(s) in RCA: 121] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
33
Uzan M. RNA processing and decay in bacteriophage T4. PROGRESS IN MOLECULAR BIOLOGY AND TRANSLATIONAL SCIENCE 2009;85:43-89. [PMID: 19215770 DOI: 10.1016/s0079-6603(08)00802-7] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
34
Identification of amino acid residues in the catalytic domain of RNase E essential for survival of Escherichia coli: functional analysis of DNase I subdomain. Genetics 2008;179:1871-9. [PMID: 18660536 DOI: 10.1534/genetics.108.088492] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
35
Horie Y, Ito Y, Ono M, Moriwaki N, Kato H, Hamakubo Y, Amano T, Wachi M, Shirai M, Asayama M. Dark-induced mRNA instability involves RNase E/G-type endoribonuclease cleavage at the AU-box and SD sequences in cyanobacteria. Mol Genet Genomics 2007;278:331-46. [PMID: 17661085 DOI: 10.1007/s00438-007-0254-9] [Citation(s) in RCA: 31] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2006] [Accepted: 05/21/2007] [Indexed: 11/29/2022]
36
Zeller ME, Csanadi A, Miczak A, Rose T, Bizebard T, Kaberdin V. Quaternary structure and biochemical properties of mycobacterial RNase E/G. Biochem J 2007;403:207-15. [PMID: 17201693 PMCID: PMC1828891 DOI: 10.1042/bj20061530] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
37
Sakai T, Nakamura N, Umitsuki G, Nagai K, Wachi M. Increased production of pyruvic acid by Escherichia coli RNase G mutants in combination with cra mutations. Appl Microbiol Biotechnol 2007;76:183-92. [PMID: 17483940 DOI: 10.1007/s00253-007-1006-9] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/12/2007] [Revised: 04/13/2007] [Accepted: 04/15/2007] [Indexed: 12/01/2022]
38
Kushner SR. Messenger RNA Decay. EcoSal Plus 2007;2. [PMID: 26443584 DOI: 10.1128/ecosalplus.4.6.4] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/05/2007] [Indexed: 06/05/2023]
39
Kaberdin VR, Bläsi U. Translation initiation and the fate of bacterial mRNAs. FEMS Microbiol Rev 2006;30:967-79. [PMID: 16989654 DOI: 10.1111/j.1574-6976.2006.00043.x] [Citation(s) in RCA: 106] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]  Open
40
Truncaite L, Zajanckauskaite A, Arlauskas A, Nivinskas R. Transcription and RNA processing during expression of genes preceding DNA ligase gene 30 in T4-related bacteriophages. Virology 2006;344:378-90. [PMID: 16225899 DOI: 10.1016/j.virol.2005.09.001] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/24/2005] [Revised: 07/01/2005] [Accepted: 09/02/2005] [Indexed: 10/25/2022]
41
De Gregorio E, Silvestro G, Petrillo M, Carlomagno MS, Di Nocera PP. Enterobacterial repetitive intergenic consensus sequence repeats in yersiniae: genomic organization and functional properties. J Bacteriol 2005;187:7945-54. [PMID: 16291667 PMCID: PMC1291288 DOI: 10.1128/jb.187.23.7945-7954.2005] [Citation(s) in RCA: 44] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
42
Briegel KJ, Baker A, Jain C. Identification and analysis of Escherichia coli ribonuclease E dominant-negative mutants. Genetics 2005;172:7-15. [PMID: 16204212 PMCID: PMC1456196 DOI: 10.1534/genetics.105.048553] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
43
Callaghan AJ, Marcaida MJ, Stead JA, McDowall KJ, Scott WG, Luisi BF. Structure of Escherichia coli RNase E catalytic domain and implications for RNA turnover. Nature 2005;437:1187-91. [PMID: 16237448 DOI: 10.1038/nature04084] [Citation(s) in RCA: 234] [Impact Index Per Article: 11.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/03/2005] [Accepted: 07/26/2005] [Indexed: 11/08/2022]
44
Niemitalo O, Neubauer A, Liebal U, Myllyharju J, Juffer AH, Neubauer P. Modelling of translation of human protein disulfide isomerase in Escherichia coli—A case study of gene optimisation. J Biotechnol 2005;120:11-24. [PMID: 16111781 DOI: 10.1016/j.jbiotec.2005.05.028] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2004] [Revised: 04/21/2005] [Accepted: 05/04/2005] [Indexed: 11/30/2022]
45
Komarova AV, Tchufistova LS, Dreyfus M, Boni IV. AU-rich sequences within 5' untranslated leaders enhance translation and stabilize mRNA in Escherichia coli. J Bacteriol 2005;187:1344-9. [PMID: 15687198 PMCID: PMC545611 DOI: 10.1128/jb.187.4.1344-1349.2005] [Citation(s) in RCA: 123] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2004] [Accepted: 11/05/2004] [Indexed: 11/20/2022]  Open
46
Wang Z, Yuan Z, Hengge UR. Processing of plasmid DNA with ColE1-like replication origin. Plasmid 2004;51:149-61. [PMID: 15109822 DOI: 10.1016/j.plasmid.2003.12.002] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/03/2003] [Revised: 11/06/2003] [Indexed: 12/22/2022]
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Redko Y, Tock MR, Adams CJ, Kaberdin VR, Grasby JA, McDowall KJ. Determination of the catalytic parameters of the N-terminal half of Escherichia coli ribonuclease E and the identification of critical functional groups in RNA substrates. J Biol Chem 2003;278:44001-8. [PMID: 12947103 DOI: 10.1074/jbc.m306760200] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
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Callaghan AJ, Grossmann JG, Redko YU, Ilag LL, Moncrieffe MC, Symmons MF, Robinson CV, McDowall KJ, Luisi BF. Quaternary Structure and Catalytic Activity of the Escherichia coli Ribonuclease E Amino-Terminal Catalytic Domain. Biochemistry 2003;42:13848-55. [PMID: 14636052 DOI: 10.1021/bi0351099] [Citation(s) in RCA: 61] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Lee K, Zhan X, Gao J, Qiu J, Feng Y, Meganathan R, Cohen SN, Georgiou G. RraA. Cell 2003. [DOI: 10.1016/j.cell.2003.08.003] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Condon C. RNA processing and degradation in Bacillus subtilis. Microbiol Mol Biol Rev 2003;67:157-74, table of contents. [PMID: 12794188 PMCID: PMC156466 DOI: 10.1128/mmbr.67.2.157-174.2003] [Citation(s) in RCA: 119] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
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