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For: Xiao H, Kaltashov IA, Eyles SJ. Indirect assessment of small hydrophobic ligand binding to a model protein using a combination of ESI MS and HDX/ESI MS. J Am Soc Mass Spectrom 2003;14:506-515. [PMID: 12745220 DOI: 10.1016/s1044-0305(03)00135-1] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/24/2023]
Number Cited by Other Article(s)
1
Tamara S, den Boer MA, Heck AJR. High-Resolution Native Mass Spectrometry. Chem Rev 2022;122:7269-7326. [PMID: 34415162 PMCID: PMC9052423 DOI: 10.1021/acs.chemrev.1c00212] [Citation(s) in RCA: 236] [Impact Index Per Article: 78.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Indexed: 12/11/2022]
2
Aliyari E, Konermann L. Atomistic Insights into the Formation of Nonspecific Protein Complexes during Electrospray Ionization. Anal Chem 2021;93:12748-12757. [PMID: 34494821 DOI: 10.1021/acs.analchem.1c02836] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
3
James EI, Murphree TA, Vorauer C, Engen JR, Guttman M. Advances in Hydrogen/Deuterium Exchange Mass Spectrometry and the Pursuit of Challenging Biological Systems. Chem Rev 2021;122:7562-7623. [PMID: 34493042 PMCID: PMC9053315 DOI: 10.1021/acs.chemrev.1c00279] [Citation(s) in RCA: 154] [Impact Index Per Article: 38.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
4
Guo C, Steinberg LK, Henderson JP, Gross ML. Organic Solvents for Enhanced Proteolysis of Stable Proteins for Hydrogen-Deuterium Exchange Mass Spectrometry. Anal Chem 2020;92:11553-11557. [PMID: 32867496 PMCID: PMC7485609 DOI: 10.1021/acs.analchem.0c02194] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
5
Kaur U, Johnson DT, Chea EE, Deredge DJ, Espino JA, Jones LM. Evolution of Structural Biology through the Lens of Mass Spectrometry. Anal Chem 2019;91:142-155. [PMID: 30457831 PMCID: PMC6472977 DOI: 10.1021/acs.analchem.8b05014] [Citation(s) in RCA: 43] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
6
Zhang Z, Vachet RW. Kinetics of Protein Complex Dissociation Studied by Hydrogen/Deuterium Exchange and Mass Spectrometry. Anal Chem 2015;87:11777-83. [PMID: 26531682 DOI: 10.1021/acs.analchem.5b03123] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
7
Salisbury JP, Liu Q, Agar JN. QUDeX-MS: hydrogen/deuterium exchange calculation for mass spectra with resolved isotopic fine structure. BMC Bioinformatics 2014;15:403. [PMID: 25495703 PMCID: PMC4274694 DOI: 10.1186/s12859-014-0403-1] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2014] [Accepted: 12/01/2014] [Indexed: 12/25/2022]  Open
8
Schermann SM, Simmons DA, Konermann L. Mass spectrometry-based approaches to protein–ligand interactions. Expert Rev Proteomics 2014;2:475-85. [PMID: 16097882 DOI: 10.1586/14789450.2.4.475] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
9
Iacob RE, Engen JR. Hydrogen exchange mass spectrometry: are we out of the quicksand? JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2012;23:1003-10. [PMID: 22476891 PMCID: PMC3389995 DOI: 10.1007/s13361-012-0377-z] [Citation(s) in RCA: 75] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2012] [Revised: 03/13/2012] [Accepted: 03/14/2012] [Indexed: 05/12/2023]
10
Kaltashov IA, Bobst CE, Zhang M, Leverence R, Gumerov DR. Transferrin as a model system for method development to study structure, dynamics and interactions of metalloproteins using mass spectrometry. BIOCHIMICA ET BIOPHYSICA ACTA 2012;1820:417-26. [PMID: 21726602 PMCID: PMC3207020 DOI: 10.1016/j.bbagen.2011.06.019] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 05/24/2011] [Revised: 06/17/2011] [Accepted: 06/21/2011] [Indexed: 12/31/2022]
11
Percy AJ, Rey M, Burns KM, Schriemer DC. Probing protein interactions with hydrogen/deuterium exchange and mass spectrometry-a review. Anal Chim Acta 2012;721:7-21. [PMID: 22405295 DOI: 10.1016/j.aca.2012.01.037] [Citation(s) in RCA: 137] [Impact Index Per Article: 10.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2011] [Revised: 01/13/2012] [Accepted: 01/17/2012] [Indexed: 11/17/2022]
12
Pan Y, Brown L, Konermann L. Hydrogen exchange mass spectrometry of bacteriorhodopsin reveals light-induced changes in the structural dynamics of a biomolecular machine. J Am Chem Soc 2011;133:20237-44. [PMID: 22043856 DOI: 10.1021/ja206197h] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]
13
Sperry JB, Huang RYC, Zhu MM, Rempel DL, Gross ML. Hydrophobic Peptides Affect Binding of Calmodulin and Ca as Explored by H/D Amide Exchange and Mass Spectrometry. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY 2011;302:85-92. [PMID: 21765646 PMCID: PMC3134286 DOI: 10.1016/j.ijms.2010.08.013] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
14
McCullough BJ, Kalapothakis JM, Chin W, Taylor K, Clarke DJ, Eastwood H, Campopiano D, MacMillan D, Dorin J, Barran PE. Binding a heparin derived disaccharide to defensin inspired peptides: insights to antimicrobial inhibition from gas-phase measurements. Phys Chem Chem Phys 2010;12:3589-96. [PMID: 20336257 DOI: 10.1039/b923784d] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
15
Cheng KW, Wong CC, Wang M, He QY, Chen F. Identification and characterization of molecular targets of natural products by mass spectrometry. MASS SPECTROMETRY REVIEWS 2010;29:126-155. [PMID: 19319922 DOI: 10.1002/mas.20235] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/27/2023]
16
Liyanage R, Devarapalli N, Puckett LM, Phan NH, Gidden J, Stites WE, Lay JO. Comparison of Two ESI MS Based H/D Exchange Methods for Extracting Protein Folding Energies. INTERNATIONAL JOURNAL OF MASS SPECTROMETRY 2009;287:96-104. [PMID: 22427739 PMCID: PMC3306186 DOI: 10.1016/j.ijms.2008.10.017] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/31/2023]
17
Kaltashov IA, Bobst CE, Abzalimov RR. H/D exchange and mass spectrometry in the studies of protein conformation and dynamics: is there a need for a top-down approach? Anal Chem 2009;81:7892-9. [PMID: 19694441 PMCID: PMC2805115 DOI: 10.1021/ac901366n] [Citation(s) in RCA: 108] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
18
Percy AJ, Slysz GW, Schriemer DC. Surrogate H/D Detection Strategy for Protein Conformational Analysis Using MS/MS Data. Anal Chem 2009;81:7900-7. [DOI: 10.1021/ac901148u] [Citation(s) in RCA: 13] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
19
Gabelica V, Rosu F, De Pauw E. A Simple Method to Determine Electrospray Response Factors of Noncovalent Complexes. Anal Chem 2009;81:6708-15. [DOI: 10.1021/ac900785m] [Citation(s) in RCA: 70] [Impact Index Per Article: 4.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
20
Torta F, Elviri L, Careri M, Mangia A, Cavazzini D, Rossi GL. Mass spectrometry and hydrogen/deuterium exchange measurements of alcohol-induced structural changes in cellular retinol-binding protein type I. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2008;22:330-336. [PMID: 18181245 DOI: 10.1002/rcm.3372] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/25/2023]
21
Sjoelund V, Kaltashov IA. Transporter-to-trap conversion: a disulfide bond formation in cellular retinoic acid binding protein I mutant triggered by retinoic acid binding irreversibly locks the ligand inside the protein. Biochemistry 2007;46:13382-90. [PMID: 17958379 PMCID: PMC2519245 DOI: 10.1021/bi700867c] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2023]
22
Busenlehner LS, Alander J, Jegerscöhld C, Holm PJ, Bhakat P, Hebert H, Morgenstern R, Armstrong RN. Location of substrate binding sites within the integral membrane protein microsomal glutathione transferase-1. Biochemistry 2007;46:2812-22. [PMID: 17297922 DOI: 10.1021/bi6023385] [Citation(s) in RCA: 27] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
23
Kaltashov IA, Zhang M, Eyles SJ, Abzalimov RR. Investigation of structure, dynamics and function of metalloproteins with electrospray ionization mass spectrometry. Anal Bioanal Chem 2006;386:472-81. [PMID: 16932945 DOI: 10.1007/s00216-006-0636-6] [Citation(s) in RCA: 48] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2006] [Revised: 06/06/2006] [Accepted: 06/19/2006] [Indexed: 10/24/2022]
24
Careri M, Elviri L, Mangia A, Zagnoni I, Torta F, Cavazzini D, Rossi GL. Mass spectrometry techniques for detection of ligand-dependent changes in the conformational flexibility of cellular retinol-binding protein type I localized by hydrogen/deuterium exchange. RAPID COMMUNICATIONS IN MASS SPECTROMETRY : RCM 2006;20:1973-80. [PMID: 16755609 DOI: 10.1002/rcm.2547] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/10/2023]
25
Xiao H, Kaltashov IA. Transient structural disorder as a facilitator of protein-ligand binding: native H/D exchange-mass spectrometry study of cellular retinoic acid binding protein I. JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY 2005;16:869-79. [PMID: 15907702 DOI: 10.1016/j.jasms.2005.02.020] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/28/2004] [Revised: 02/14/2005] [Accepted: 02/17/2005] [Indexed: 05/02/2023]
26
Rühl R. Induction of PXR-mediated metabolism by beta-carotene. Biochim Biophys Acta Mol Basis Dis 2004;1740:162-9. [PMID: 15949683 DOI: 10.1016/j.bbadis.2004.11.013] [Citation(s) in RCA: 19] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2004] [Revised: 11/10/2004] [Accepted: 11/22/2004] [Indexed: 01/17/2023]
27
Csiszar S, Thachuk M. Using ellipsoids to model charge distributions in gas phase protein complex ion dissociation. CAN J CHEM 2004. [DOI: 10.1139/v04-154] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
28
McCammon MG, Robinson CV. Structural change in response to ligand binding. Curr Opin Chem Biol 2004;8:60-5. [PMID: 15036158 DOI: 10.1016/j.cbpa.2003.11.005] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
29
Williams DH, O'Brien DP, Sandercock AM, Stephens E. Order Changes within Receptor Systems upon Ligand Binding: Receptor Tightening/Oligomerisation and the Interpretation of Binding Parameters. J Mol Biol 2004;340:373-83. [PMID: 15201058 DOI: 10.1016/j.jmb.2004.04.056] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2004] [Revised: 04/23/2004] [Accepted: 04/23/2004] [Indexed: 10/26/2022]
30
Lanman J, Prevelige PE. High-sensitivity mass spectrometry for imaging subunit interactions: hydrogen/deuterium exchange. Curr Opin Struct Biol 2004;14:181-8. [PMID: 15093832 DOI: 10.1016/j.sbi.2004.03.006] [Citation(s) in RCA: 40] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
31
Clark SM, Konermann L. Screening for Noncovalent Ligand−Receptor Interactions by Electrospray Ionization Mass Spectrometry-Based Diffusion Measurements. Anal Chem 2004;76:1257-63. [PMID: 14987079 DOI: 10.1021/ac035230l] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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