Operational Strategies to Selectively Produce Purple Bacteria for Microbial Protein in Raceway Reactors

Establishing an efficient membrane bioreactor for simultaneous pollutant removal and purple bacteria production under salinity stress

Recovering resources from wastewater to alleviate the energy crisis has become the prevailing trend of technological development. Purple phototrophic bacteria (PPB), a group of fast-growing microbes, have been widely noticed for their potential in producing value-added products from waste streams. However, saline contents in these waste streams, such as food processing wastewater pose a big challenge, which not only restrain the pollutant removal efficiency, but also hinder the growth of functional microbes. To overcome this, a photo anaerobic membrane bioreactor cultivating PPB (PPB-MBR) was constructed and its performance upon long-term salinity stress was investigated. PPB-MBR achieved desirable pollutants removal performance with the average COD and NH4+ removal efficiency being 87% (±8%, n = 87) and 89% (±10%, n = 87), respectively during long-term exposure to salinity stress of 1-80 g NaCl L-1. PPB were predominant during the entire operation period of 87 days (60%-80%), obtaining maximum biomass yield of 0.67 g biomass g-1 CODremoved and protein productivity of 0.18 g L-1 d-1 at the salinity level of 20 g NaCl L-1 and 60 g NaCl L-1, respectively. The sum of value-added products in proportion to the biomass reached 58% at maximum at the salinity level of 60 g NaCl L-1 with protein, pigments and trehalose contributing to 44%, 8.7%, and 5%, respectively. Based on economic analysis, the most cost-saving scenario treating food processing wastewater was revealed at salinity level of around 20 g NaCl L-1. However, more optimization tools are needed to boost the production efficiency so that the profit from value-added products can outweigh the additional cost by excess salinity in the future implication.

A novel mechanistic modelling approach for microbial selection dynamics: Towards improved design and control of raceway reactors for purple bacteria

Purple phototrophic bacteria (PPB) show an underexplored potential for resource recovery from wastewater. Raceway reactors offer a more affordable full-scale solution on wastewater and enable useful additional aerobic processes. Current mathematical models of PPB systems provide useful mechanistic insights, but do not represent the full metabolic versatility of PPB and thus require further advancement to simulate the process for technology development and control. In this study, a new modelling approach for PPB that integrates the photoheterotrophic, and both anaerobic and aerobic chemoheterotrophic metabolic pathways through an empirical parallel metabolic growth constant was proposed. It aimed the modelling of microbial selection dynamics in competition with aerobic and anaerobic microbial community under different operational scenarios. A sensitivity analysis was carried out to identify the most influential parameters within the model and calibrate them based on experimental data. Process perturbation scenarios were simulated, which showed a good performance of the model.

Achieving Discharge Limits in Single-Stage Domestic Wastewater Treatment by Combining Urban Waste Sources and Phototrophic Mixed Cultures

This work shows the potential of a new way of co-treatment of domestic wastewater (DWW) and a liquid stream coming from the thermal hydrolysis of the organic fraction of municipal solid waste (OFMSW) mediated by a mixed culture of purple phototrophic bacteria (PPB) capable of assimilating carbon and nutrients from the medium. The biological system is an open single-step process operated under microaerophilic conditions at an oxidative reduction potential (ORP) < 0 mV with a photoperiod of 12/24 h and fed during the light stage only so the results can be extrapolated to outdoor open pond operations by monitoring the ORP. The effluent mostly complies with the discharge values of the Spanish legislation in COD and p-values (<125 mg/L; <2 mg/L), respectively, and punctually on values in N (<15 mg/L). Applying an HRT of 3 d and a ratio of 100:7 (COD:N), the presence of PPB in the mixed culture surpassed 50% of 16S rRNA gene copies, removing 78% of COD, 53% of N, and 66% of P. Furthermore, by increasing the HRT to 5 d, removal efficiencies of 83% of COD, 65% of N, and 91% of P were achieved. In addition, the reactors were further operated in a membrane bioreactor, thus separating the HRT from the SRT to increase the specific loading rate. Very satisfactory removal efficiencies were achieved by applying an HRT and SRT of 2.3 and 3 d, respectively: 84% of COD, 49% of N, and 93% of P despite the low presence of PPB due to more oxidative conditions, which step-by-step re-colonized the mixed culture until reaching >20% of 16S rRNA gene copies after 49 d of operation. These results open the door to scaling up the process in open photobioreactors capable of treating urban wastewater and municipal solid waste in a single stage and under microaerophilic conditions by controlling the ORP of the system.

Expanding mechanistic models to represent purple phototrophic bacteria enriched cultures growing outdoors

The economic feasibility of purple phototrophic bacteria (PPB) for resource recovery relies on using enriched-mixed cultures and sunlight. This work presents an extended Photo-Anaerobic Model (ePAnM), considering: (i) the diverse metabolic capabilities of PPB, (ii) microbial clades interacting with PPB, and (iii) varying environmental conditions. Key kinetic and stoichiometric parameters were either determined experimentally (with dedicated tests), calculated, or gathered from literature. The model was calibrated and validated using different datasets from an outdoors demonstration-scale reactor, as well as results from aerobic and anaerobic batch tests. The ePAnM was able to predict the concentrations of key compounds/components (e.g., COD, volatile fatty acids, and nutrients), as well as microbial communities (with anaerobic systems dominated by fermenters and PPB). The results underlined the importance of considering other microbial clades and varying environmental conditions. The model predicted a minimum hydraulic retention time of 0.5 d^-1. A maximum width of 10 cm in flat plate reactors should not be exceeded. Simulations showed the potential of a combined day-anaerobic/night-aerobic operational strategy to allow efficient continuous operation.

Dehazing redox homeostasis to foster purple bacteria biotechnology

Purple non-sulfur bacteria (PNSB) show great potential for environmental and industrial biotechnology, producing microbial protein, biohydrogen, polyhydroxyalkanoates (PHAs), pigments, etc. When grown photoheterotrophically, the carbon source is typically more reduced than the PNSB biomass, which leads to a redox imbalance. To mitigate the excess of electrons, PNSB can exhibit several 'electron sinking' strategies, such as CO₂ fixation, N₂ fixation, and H₂ and PHA production. The lack of a comprehensive (over)view of these redox strategies is hindering the implementation of PNSB for biotechnology applications. This review aims to present the state of the art of redox homeostasis in phototrophically grown PNSB, presenting known and theoretically expected strategies, and discussing them from stoichiometric, thermodynamic, metabolic, and economic points of view.

Purple bacteria screening for photoautohydrogenotrophic food production: Are new H(2)-fed isolates faster and nutritionally better than photoheterotrophically obtained reference species?

Photoautohydrogenotrophic enrichments of wastewater treatment microbiomes were performed to obtain hypothetically high-potential specialist species for biotechnological applications. From these enrichment cultures, ten photoautohydrogenotrophic species were isolated: six Rhodopseudomonas species, three Rubrivivax members and Rhodobacter blasticus. The performance of these isolates was compared to three commonly studied, and originally photoheterotrophically enriched species (Rhodopseudomonas palustris, Rhodobacter capsulatus and Rhodobacter sphaeroides), designated as reference species. Repeated subcultivations were applied to improve the initial poor performance of the isolates (acclimation effect), which resulted in increases in both maximum growth rate and protein productivity. However, the maximum growth rate of the reference species remained 3-7 times higher compared to the isolates (0.42-0.84 d^-1 at 28 °C), while protein productivities remained 1.5-1.7 times higher. This indicated that H₂-based enrichment did not result in photoautohydrogenotrophic specialists, suggesting that the reference species are more suitable for intensified biomass and protein production. On the other hand, the isolates were able to provide equally high protein quality profiles as the references species, providing full dietary essential amino acid matches for human food. Lastly, the effect of metabolic carbon/electron switching (back and forth between auto- to heterotrophic conditions) initially boosted µ_max when returning to photoautohydrogenotrophic conditions. However, the switch negatively impacted lag phase, protein productivities and pigment contents. In the case of protein productivity, the acquired acclimation was partially lost with decreases of up to 44 % and 40 % respectively for isolates and reference species. Finally, the three reference species, and specifically Rh. capsulatus, remained the most suitable candidate(s) for further biotechnological development.

Exploring the role of antimicrobials in the selective growth of purple phototrophic bacteria through genome mining and agar spot assays

Purple non-sulphur bacteria (PNSB) are an emerging group of microbes attractive for applied microbiology applications such as wastewater treatment, plant biostimulants, microbial protein, polyhydroxyalkanoates and H₂ production. These photoorganoheterotrophic microbes have the unique ability to grow selectively on organic carbon in anaerobic photobioreactors. This so-called selectivity implies that the microbial community will have a low diversity and a high abundance of a particular PNSB species. Recently, it has been shown that certain PNSB strains can produce antimicrobials, yet it remains unclear whether these contribute to competitive inhibition. This research aimed to understand which type of antimicrobial PNSB produce and identify whether these compounds contribute to their selective growth. Mining 166 publicly-available PNSB genomes using the computational tool BAGEL showed that 59% contained antimicrobial encoding regions, more specifically biosynthetic clusters of bacteriocins and non-ribosomal peptide synthetases. Inter- and intra-species inhibition was observed in agar spot assays for Rhodobacter blasticus EBR2 and Rhodopseudomonas palustris EBE1 with inhibition zones of, respectively, 5.1 and 1.5-5.7 mm. Peptidomic analysis detected a peptide fragment in the supernatant (SVLQLLR) that had a 100% percentage identity match with a known non-ribosomal peptide synthetase with antimicrobial activity.

Effective mechanisms of water purification for nitrogen-modified attapulgite, volcanic rock, and combined exogenous microorganisms

The study tested the water purification mechanism of the combination of microorganisms and purification materials via characteristic, enzymatic, and metagenomics methods. At 48 h, the removal rates of total nitrogen, total phosphorous, and Mn chemical oxygen demand in the combination group were 46.91, 50.93, and 65.08%, respectively. The alkaline phosphatase (AKP) activity increased during all times tested in the volcanic rock, Al@TCAP, and exogenous microorganism groups, while the organophosphorus hydrolase (OPH), dehydrogenase (DHO), and microbial nitrite reductase (NAR) activities increased at 36-48, 6-24, and 36-48 h, respectively. However, the tested activities only increased in the combination groups at 48 h. Al@TCAP exhibits a weak microbial loading capacity, and the Al@TCAP removal is primarily attributed to adsorption. The volcanic rock has a sufficient ability to load microorganisms, and the organisms primarily perform the removal for improved water quality. The predominant genera Pirellulaceae and Polynucleobacter served as the sensitive biomarkers for the treatment at 24, 36-48 h. Al@TCAP increased the expression of Planctomycetes and Actinobacteria, while volcanic rock increased and decreased the expression of Planctomycetes and Proteobacteria. The growth of Planctomycetes and the denitrification reaction were promoted by Al@TCAP and the exogenous microorganisms. The purification material addition group decreased the expression of Hyaloraphidium, Chytridiomycetes (especially Hyaloraphidium), and Monoblepharidomycetes and increased at 36-48 h, respectively. Ascomycota, Basidiomycota, and Kickxellomycota increased in group E, which enhanced the nitrogen cycle through microbial enzyme activities, and the growth of the genus Aspergillus enhanced the phosphorous purification effect.

Light attenuation in enriched purple phototrophic bacteria cultures: Implications for modelling and reactor design

Light attenuation in enriched purple phototrophic bacteria (PPB) cultures has not been studied, and its understanding is critical for proper process modelling and reactor design, especially for scaled systems. This work evaluated the effect of different biomass concentrations, reactor configurations, wastewater matrices, and growth conditions, on the attenuation extent of near infra-red (NIR) and ultraviolet-visible (UV-VIS) light spectra. The results show that increased biomass concentrations lead to higher light attenuation, and that PPB absorb both VIS and NIR wavelengths, with both fractions of the spectrum being equally absorbed at biomass concentrations above 1,000 g COD·m^-3. A flat plate configuration showed less attenuation compared with cylindrical reactors illuminated from the top, representative for open ponds. Neither a complex wastewater matrix nor the presence of polyhydroxyalkanoates (under nutrient limited conditions) affected light attenuation significantly. The pigment concentration (both bacteriochlorophyll and carotenoids) however, had a strong effect, with significant attenuation in the presence of pigments. Attenuation predictions using the Lambert-Beer law (excluding scattering) and the Schuster model (including scattering) indicated that light scattering had a minimal effect. A proposed mathematical model, based on the Lambert-Beer law and a Monod function for light requirements, allowed effective prediction of the kinetics of photoheterotrophic growth. This resulted in a half saturation coefficient of 4.6 W·m^-2. Finally, the results showed that in dense outdoor PPB cultures (≥1,000 g COD·m^-3), effective light penetration is only 5 cm, which biases design away from horizontal lagoons, and towards non-incident multi-panel systems such as flat plate reactors.

Outdoor demonstration-scale flat plate photobioreactor for resource recovery with purple phototrophic bacteria

To make purple phototrophic bacteria (PPB)-based technologies a reality for resource recovery, research must be demonstrated outdoors, using scaled reactors. In this study, a 10 m long PPB-enriched flat plate photobioreactor (FPPBR) with a volume of 0.95 m³ was operated for 253 days, fed with poultry processing wastewater. Different operational strategies were tested, including varying influent types, retention times, feeding strategies, and anaerobic/aerobic conditions in a novel mixed metabolic mode concept. The overall results show that regardless of the fermented wastewater fed (raw or after solid removal via dissolved air flotation) and the varying environmental conditions (e.g., light exposure and temperatures), the FPPBR provided effective volatile fatty acids (VFAs), N, and P removals (average efficiencies of >90%, 34-77%, and 28-45%, respectively). The removal of N and P was limited by the availability of biodegradable COD. Biomass (C, N and P) could be harvested at ∼90% VS/TS ratio, 58% crude protein content and a suitable amino acid profile for potential feed applications. During fully anaerobic operation with semicontinuous/day-only feeding, the FPPBR showed biomass productivities between 25 and 84 g VS m^-2 d^-1 (high due to solid influx; the productivities estimated from COD removal rates were 6.0-24 g VS•m^-2•d^-1 (conservative values)), and soluble COD removal rates of up to 1.0 g•L^-1•d^-1 (overall average of 0.34 ± 0.16 g•L^-1•d^-1). Under these conditions, the relative abundance of PPB in the harvested biomass was up to 56%. A minimum overall HRT of 2-2.4 d (1.0-1.2 d when only fed during the day) is recommended to avoid PPB washout, assuming no biomass retention. A combined daily-illuminated-anaerobic/night-aerobic operation (supplying air during night-time) exploiting photoheterotrophy during the day and aerobic chemoheterotrophy of the same bacteria at night improved the overall removal performance, avoiding VFA accumulation during the night. However, while enabling enhanced treatment, this resulted in a lower relative abundance of PPB and reduced biomass productivities, highlighting the need to balance resource recovery and treatment goals.

Spectral bands of incandescent lamp leading to variable productivity of purple bacteria biomass and microbial protein: Full is better than segmented

Purple non‑sulfur bacteria (PNSB) are competent microorganisms capable of producing value-added products from waste streams. Light source is one of the most influential factors determining the efficiency of this process. Previous studies mostly focused on optimizing light intensity, while the impact of spectral bands on PNSB growth is still unknown. To fill the knowledge gap, this study investigated the responses of PNSB (i.e., Rhodobacter sphaeroides) growth, protein content and enzyme activity to various spectral bands of an incandescent lamp for the first time. It was found that the full spectrum of the incandescent lamp was propitious to cultivate PNSB than segmented spectral bands, as demonstrated by the maximum biomass yield of 1.05 g biomass g^-1 COD_removed, specific growth rate of 0.53 d^-1 and protein concentration of 0.48 g L^-1. The production of biomass and protein under infrared (IR) spectral band were slightly lower than those under full spectrum, but 3.2 and 1.7 times higher than the average values (0.14 g L^-1 and 0.07 g L^-1) under visible spectral bands, respectively. The variation trends of enzymatic activities, such as fructose-1,6-bisphosphatase (FBP) and photopigments were consistent with that of PNSB biomass upon varying spectral bands, suggesting that the spectral bands might induce a variable PNSB biomass via affecting the Calvin cycle and photophosphorylation process. These results provide a new perspective that spectrum bands of light sources should be considered in the process optimization.

Regulating light, oxygen and volatile fatty acids to boost the productivity of purple bacteria biomass, protein and co-enzyme Q10

Purple non‑sulfur bacteria (PNSB) possess significant potential for bioresource recovery from wastewater. Effective operational tools are needed to boost productivity and direct the PNSB biomass towards abundant value-added substances (e.g., protein and co-enzyme Q10, CoQ10). This study aimed to investigate the impact of light, oxygen and volatile fatty acids (VFAs) on PNSB growth (i.e., Rhodobacter sphaeroides) and productivity of protein and CoQ10. Overall, the biomass yields and specific growth rates of PNSB were in the ranges of 0.57-1.08 g biomass g^-1 COD_removed and 0.48-0.71 d^-1, respectively. VFAs did not influence the biomass yield, yet acetate and VFA mixtures enhanced the specific growth rate with a factor of 1.2-1.5 compared to propionate and butyrate. The most PNSB biomass (1.08 g biomass g^-1 COD_removed and 0.71 d^-1) and the highest biomass quality (protein content of 609 mg g^-1 dry cell weight (DCW) and CoQ10 content of 13.21 mg g^-1 DCW) were obtained in the presence of VFA mixtures under natural light and microaerobic (low light alternated with darkness; dissolved oxygen (DO) between 0.5 and 1 mg L^-1) conditions (vs. light anaerobic and dark aerobic cultivations). Further investigation on VFAs dynamics revealed that acetate was most rapidly consumed by PNSB in the individual VFA feeding (specific uptake rate of 0.76 g COD g^-1 DCW d^-1), while acetate as a co-substrate in the mixed VFAs feeding might accelerate the consumption of propionate and butyrate through providing additional cell metabolism precursor. Enzymes activities of succinate dehydrogenase and fructose-1,6-bisphosphatase as well as the concentration of photo pigments confirmed that light, oxygen and VFAs regulated the key enzymes in the energy metabolism and biomass synthesis to boost PNSB growth. These results provide a promising prospect for utilization of fermented waste stream for the harvest of PNSB biomass, protein and CoQ10.

Naturally illuminated photobioreactors for resource recovery from piggery and chicken-processing wastewaters utilising purple phototrophic bacteria

Resource recovery from wastewater, preferably as high value products, has become an integral part of modern wastewater treatment. This work presents the potential to produce single cell protein (SCP) from pre-settled piggery wastewater (PWW) and meat chicken processing wastewater (CWW), utilising anaerobic purple phototrophic bacteria (PPB). PPB were grown as biofilm in outdoors 60 L, 80 L and 100 L flat-plate reactors, operated in sequential batch mode. PPB biofilm was recovered from reactor walls at a total solid (TS) content ∼90 g•L - 1, and the harvested biomass (depending on the wastewater) had a consistent quality, with high protein contents (50-65%) and low ash, potentially applicable as SCP. The COD, N and P removal efficiencies were 71±5.3%, 22±6.6%, 65±5.6% for PWW and 78±1.8%, 67±2.7% and 37±4.0% for CWW, respectively, with biofilm areal productivities up to 14 g TS•m - 2•d - 1. This was achieved at ammonium-N concentrations over 1.0 g•L - 1 and temperatures up to 55 °C and down to 6 °C (daily fluctuations of 20-30 °C). The removal performances and biomass productivities were mostly dependent on the bioavailable COD in the form of volatile fatty acids (VFA). At sufficient VFA availability, the irradiance became limiting, capping biofilm formation. Harvesting of the suspended fraction resulted in increased productivities and recovery efficiencies, but lowered the product quality (e.g., containing undesired inerts). The optimum between quantity and quality of product is dependent on the wastewater characteristics (i.e., organic degradable fraction) and potential pre-treatment. This study shows the potential to utilise sunlight to treat agri-industrial wastewaters while generating protein-rich PPB biomass to be used as a feed, feed additive or feed supplement.

Aerobes and phototrophs as microbial organic fertilizers: Exploring mineralization, fertilization and plant protection features

Organic fertilizers and especially microbial biomass, also known as microbial fertilizer, can enable a paradigm shift to the conventional fertilizer-to-food chain, particularly when produced on secondary resources. Microbial fertilizers are already common practice (e.g. Bloom^® and Synagro); yet microbial fertilizer blends to align the nutrient release profile to the plant’s needs are, thus far, unexplored. Moreover, most research only focuses on direct fertilization effects without considering added value properties, such as disease prevention. This study has explored three promising types of microbial fertilizers, namely dried biomass from a consortium of aerobic heterotrophic bacteria, a microalga (Arthrospira platensis) and a purple non-sulfur bacterium (Rhodobacter sphaeroides). Mineralization and nitrification experiments showed that the nitrogen mineralization profile can be tuned to the plant’s needs by blending microbial fertilizers, without having toxic ammonium peaks. In a pot trial with perennial ryegrass (Lolium perenne L.), the performance of microbial fertilizers was similar to the reference organic fertilizer, with cumulative dry matter yields of 5.6–6.7 g per pot. This was confirmed in a pot trial with tomato (Solanum lycopersicum L.), showing an average total plant length of 90–99 cm after a growing period of 62 days for the reference organic fertilizer and the microbial fertilizers. Moreover, tomato plants artificially infected with powdery mildew (Oidium neolycopersici), a devastating disease for the horticultural industry, showed reduced disease symptoms when A. platensis was present in the growing medium. These findings strengthen the application potential of this novel class of organic fertilizers in the bioeconomy, with a promising match between nutrient mineralization and plant requirements as well as added value in crop protection.

Microbial community-based protein production from wastewater for animal feed applications

Single cell protein (SCP) derived from microbial biomass represents a promising source of protein for animal feed additives. While microbial community-based approaches to SCP production using nutrient-rich wastewaters incur lower costs than traditional single organism-based approaches, they have received little attention. This review focuses on SCP production using wastewaters with an emphasis on food-processing wastewaters. An elemental carbon-to-nitrogen ratio ranging from 10 to 20 is recommended to promote a high microbial biomass protein yield. Proteobacteria was identified as the most prevalent phylum within SCP-producing microbial communities. More research is needed to determine the composition of the microbial community best suited for SCP production, as well as its relationship with the microbial community in influent food-processing wastewaters. Remaining challenges are target protein and essential amino acids content, protein quantification and biomass yield assessment. The review presents bioreactor design considerations towards defining suitable operating conditions for SCP production through microbial community-based fermentation.

Effects of Mixing Volatile Fatty Acids as Carbon Sources on Rhodospirillum rubrum Carbon Metabolism and Redox Balance Mechanisms

Rhodospirillum rubrum has a versatile metabolism, and as such can assimilate a broad range of carbon sources, including volatile fatty acids. These carbon sources are gaining increasing interest for biotechnological processes, since they reduce the production costs for numerous value-added compounds and contribute to the development of a more circular economy. Usually, studies characterizing carbon metabolism are performed by supplying a single carbon source; however, in both environmental and engineered conditions, cells would rather grow on mixtures of volatile fatty acids (VFAs) generated via anaerobic fermentation. In this study, we show that the use of a mixture of VFAs as carbon source appears to have a synergy effect on growth phenotype. In addition, while propionate and butyrate assimilation in Rs. rubrum is known to require an excess of bicarbonate in the culture medium, mixing them reduces the requirement for bicarbonate supplementation. The fixation of CO2 is one of the main electron sinks in purple bacteria; therefore, this observation suggests an adaptation of both metabolic pathways used for the assimilation of these VFAs and redox homeostasis mechanism. Based on proteomic data, modification of the propionate assimilation pathway seems to occur with a switch from a methylmalonyl-CoA intermediate to the methylcitrate cycle. Moreover, it seems that the presence of a mixture of VFAs switches electron sinking from CO2 fixation to H2 and isoleucine production.

Enrichment and Aggregation of Purple Non-sulfur Bacteria in a Mixed-Culture Sequencing-Batch Photobioreactor for Biological Nutrient Removal From Wastewater

Mixed-culture biotechnologies are widely used to capture nutrients from wastewater. Purple non-sulfur bacteria (PNSB), a guild of anoxygenic photomixotrophic organisms, rise interest for their ability to directly assimilate nutrients in the biomass. One challenge targets the aggregation and accumulation of PNSB biomass to separate it from the treated water. Our aim was to enrich and produce a concentrated, fast-settling PNSB biomass with high nutrient removal capacity in a 1.5-L, stirred-tank, anaerobic sequencing-batch photobioreactor (SBR). PNSB were rapidly enriched after inoculation with activated sludge at 0.1 gVSS L^-1 in a first batch of 24 h under continuous irradiance of infrared (IR) light (>700 nm) at 375 W m^-2, with Rhodobacter reaching 54% of amplicon sequencing read counts. SBR operations with decreasing hydraulic retention times (48 to 16 h, i.e., 1-3 cycles d^-1) and increasing volumetric organic loading rates (0.2-1.3 kg COD d^-1 m^-3) stimulated biomass aggregation, settling, and accumulation in the system, reaching as high as 3.8 g VSS L^-1. The sludge retention time (SRT) increased freely from 2.5 to 11 days. Acetate, ammonium, and orthophosphate were removed up to 96% at a rate of 1.1 kg COD d^-1 m^-3, 77% at 113 g N d^-1 m^-3, and 73% at 15 g P d^-1 m^-3, respectively, with COD:N:P assimilation ratio of 100:6.7:0.9 m/m/m. SBR regime shifts sequentially selected for Rhodobacter (90%) under shorter SRT and non-limiting concentration of acetate during reaction phases, for Rhodopseudomonas (70%) under longer SRT and acetate limitation during reaction, and Blastochloris (10%) under higher biomass concentrations, underlying competition for substrate and photons in the PNSB guild. With SBR operations we produced a fast-settling biomass, highly (>90%) enriched in PNSB. A high nutrient removal was achieved by biomass assimilation, reaching the European nutrient discharge limits. We opened further insights on the microbial ecology of PNSB-based processes for water resource recovery.