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Nugroho RAP, Zaag I, Lamade E, Lukman R, Caliman JP, Tcherkez G. Metabolomics-Assisted Breeding in Oil Palm: Potential and Current Perspectives. Int J Mol Sci 2024; 25:9833. [PMID: 39337319 PMCID: PMC11431877 DOI: 10.3390/ijms25189833] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2024] [Revised: 09/07/2024] [Accepted: 09/09/2024] [Indexed: 09/30/2024] Open
Abstract
Oil palm is presently the most important oil-producing crop worldwide in terms of oil production and consumption. However, oil palm cultivation faces important challenges such as adverse climatic conditions, expensive fertilization requirements, and fungal pathogens, including Ganoderma. Intense efforts in oil palm breeding are devoted to improving both oil production yield and resistance to environmental cues. Metabolomics can be of interest because it provides many quantitative traits and metabolic signatures that can be selected for to optimize oil palm performance. Here, we briefly review how metabolomics can help oil palm breeding, and to do so, we give examples of recent metabolomics analyses and provide a roadmap to use metabolomics-assisted breeding.
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Affiliation(s)
- Rizki Anjal P Nugroho
- Institut de Recherche en Horticulture et Semences, Université d'Angers, 49070 Beaucouzé, France
- Sinar Mas Agro Resources and Technology Research Institute (SMARTRI), Jalan Teuku Umar 19, Pekanbaru 28112, Riau, Indonesia
| | - Ismail Zaag
- Institut de Recherche en Horticulture et Semences, Université d'Angers, 49070 Beaucouzé, France
- Centre de Coopération Internationale en Recherche Agronomique pour le Développement, UMR ABSYS, 34398 Montpellier, France
- Systèmes de Pérennes, University of Montpellier, Centre de Coopération Internationale en Recherche Agronomique pour le Développement, 34398 Montpellier, France
| | - Emmanuelle Lamade
- Centre de Coopération Internationale en Recherche Agronomique pour le Développement, UMR ABSYS, 34398 Montpellier, France
- Systèmes de Pérennes, University of Montpellier, Centre de Coopération Internationale en Recherche Agronomique pour le Développement, 34398 Montpellier, France
- Research School of Biology, Australian National University, Canberra, ACT 2601, Australia
| | - Rudy Lukman
- Sinar Mas Agro Resources and Technology Research Institute (SMARTRI), Jalan Teuku Umar 19, Pekanbaru 28112, Riau, Indonesia
| | - Jean-Pierre Caliman
- Sinar Mas Agro Resources and Technology Research Institute (SMARTRI), Jalan Teuku Umar 19, Pekanbaru 28112, Riau, Indonesia
| | - Guillaume Tcherkez
- Institut de Recherche en Horticulture et Semences, Université d'Angers, 49070 Beaucouzé, France
- Research School of Biology, Australian National University, Canberra, ACT 2601, Australia
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Shen J, Xiao X, Zhong D, Lian H. Potassium humate supplementation improves photosynthesis and agronomic and yield traits of foxtail millet. Sci Rep 2024; 14:9508. [PMID: 38664476 PMCID: PMC11045805 DOI: 10.1038/s41598-024-57354-x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2024] [Accepted: 03/18/2024] [Indexed: 04/28/2024] Open
Abstract
Foxtail millet is a highly nutritious crop, which is widely cultivated in arid and semi-arid areas worldwide. Humic acid (HA), as a common plant growth regulator, is used as an organic fertilizer and feed additive in agricultural production. However, the impact of potassium humate KH on the photosynthetic rate and yield of foxtail millet has not yet been studied. We explored the effects of KH application on the morphology, photosynthetic ability, carbon and nitrogen metabolism, and yield of foxtail millet. A field experiment was performed using six concentrations of KH (0, 20, 40, 80, 160, and 320 kg ha-1) supplied foliarly at the booting stage in Zhangza 10 cultivar (a widely grown high-yield variety). The results showed that KH treatment increased growth, chlorophyll content (SPAD), photosynthetic rate (Pn), transpiration rate (Tr), and stomatal conductance (Gs). In addition, soluble protein content, sugar content, and nitrate reductase activity increased in KH-treated plants. With increased KH concentration, the effects became more evident and the peak values of each factor were achieved at 80 kg ha-1. Photosynthetic rate showed significant correlation with SPAD, Tr, Gs, and soluble protein content, but was negatively correlated with intercellular CO2 concentration. Compared to that of the control, the yield of foxtail millet under the T2, T3, T4, and T5 (40, 80, 160, and 320 kg ha-1 of KH) treatments significantly increased by 6.0%, 12.7%, 10.5%, and 8.6%, respectively. Yield exhibited a significant positive correlation with Tr, Pn, and Gs. Overall, KH enhances photosynthetic rate and yield of foxtail millet, therefore it may be conducive to stable millet production. These findings may provide a theoretical basis for the green and efficient production of millet fields.
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Affiliation(s)
- Jie Shen
- Department of Life Sciences, Changzhi University, Changzhi, 046011, China
| | - Xiaolu Xiao
- Oil Crops Research Institute, Chinese Academy of Agricultural Sciences, Wuhan, 430062, China
| | - Dandan Zhong
- College of Agronomy, Shanxi Agricultural University, Taigu, 030801, China
| | - Huida Lian
- Department of Life Sciences, Changzhi University, Changzhi, 046011, China.
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Apriyanto A, Compart J, Zimmermann V, Alseekh S, Fernie AR, Fettke J. Indication that starch and sucrose are biomarkers for oil yield in oil palm (Elaeis guineensis Jacq.). Food Chem 2022; 393:133361. [DOI: 10.1016/j.foodchem.2022.133361] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/03/2022] [Revised: 05/02/2022] [Accepted: 05/29/2022] [Indexed: 11/04/2022]
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Xu X, Wang F, Xing Y, Liu J, Lv M, Meng H, Du X, Zhu Z, Ge S, Jiang Y. Appropriate and Constant Potassium Supply Promotes the Growth of M9T337 Apple Rootstocks by Regulating Endogenous Hormones and Carbon and Nitrogen Metabolism. FRONTIERS IN PLANT SCIENCE 2022; 13:827478. [PMID: 35371125 PMCID: PMC8967362 DOI: 10.3389/fpls.2022.827478] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Accepted: 02/21/2022] [Indexed: 05/17/2023]
Abstract
Potassium (K) is an indispensable nutrient element in the development of fruit trees in terms of yield and quality. It is unclear how a stable or unstable supply of K affects plant growth. We studied the root morphology and physiological and molecular changes in the carbon and nitrogen metabolism of M9T337 apple rootstock under different K levels and supply methods using hydroponics. Five K supply treatments were implemented: continuous low K (KL), initial low and then high K (KLH), appropriate and constant K (KAC), initial high and then low K (KHL), and continuous high K (KH). The results showed that the biomass, root activity, photosynthesis, and carbon and nitrogen metabolism of the M9T337 rootstocks were inhibited under KL, KH, KLH and KHL conditions. The KAC treatment promoted root growth by optimizing endogenous hormone content, enhancing carbon and nitrogen metabolism enzyme activities, improving photosynthesis, optimizing the distribution of carbon and nitrogen, and upregulating the transcription levels of nitrogen assimilation-related genes (nitrate reductase, glutamine synthetase, glutamate synthase, MdNRT1.1, MdNRT1.2, MdNRT1.5, MdNRT2.4). These results suggest that an appropriate and constant K supply ensures the efficient assimilation and utilization of nitrogen and carbon.
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Weinert CH, Sonntag F, Egert B, Pawelzik E, Kulling SE, Smit I. The effect of potassium fertilization on the metabolite profile of tomato fruit (Solanum lycopersicum L.). PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 159:89-99. [PMID: 33348242 DOI: 10.1016/j.plaphy.2020.12.010] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/04/2020] [Accepted: 12/09/2020] [Indexed: 06/12/2023]
Abstract
The macronutrient potassium (K) has vital physiological functions in plants and its availability can strongly impact quality of crops like tomato. The impact of K nutrition on conventional tomato fruit quality parameters has been described several times, but detailed investigations on the effect of K supply on the fruit metabolite profile are still rare. To fill this gap, we investigated the influence of K fertilization on the metabolite profile of tomato fruits. For this purpose, an outdoor pot experiment with three different cocktail tomato cultivars was performed. A fertilization regimen with five K levels was applied, ranging from deficiency to sufficient supply. Fruit samples were analyzed by untargeted GC×GC-MS to cover the primary metabolite profile as well as some secondary metabolites. As verified using ICP-OES, fruit K content was highly proportional to the supplied amount of K. At the metabolite profile level, the most prominent and cultivar-independent effect of increased K fertilization was the rise of tricarboxylic acid (TCA) cycle intermediates. Further effects were more cultivar-specific, for example an increase of the mobile nitrogen pool (e.g. amines like putrescine and amides like asparagine), changes in the profile of minor sugars (especially disaccharides) as well as higher levels of some secondary metabolites. Pronounced response patterns were mainly observed in the cultivars Primavera and Yellow Submarine that were recently characterized as higher yielding, demanding a stronger consideration of cultivar differences in future studies.
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Affiliation(s)
- Christoph H Weinert
- Max Rubner-Institut, Department of Safety and Quality of Fruit and Vegetables, Haid-und-Neu-Straße 9, 76131, Karlsruhe, Germany.
| | - Frederike Sonntag
- Division Quality of Plant Products, Department of Crop Sciences, University of Goettingen, Carl-Sprengel-Weg 1, 37075, Göttingen, Germany
| | - Björn Egert
- Max Rubner-Institut, Department of Safety and Quality of Fruit and Vegetables, Haid-und-Neu-Straße 9, 76131, Karlsruhe, Germany
| | - Elke Pawelzik
- Division Quality of Plant Products, Department of Crop Sciences, University of Goettingen, Carl-Sprengel-Weg 1, 37075, Göttingen, Germany
| | - Sabine E Kulling
- Max Rubner-Institut, Department of Safety and Quality of Fruit and Vegetables, Haid-und-Neu-Straße 9, 76131, Karlsruhe, Germany
| | - Inga Smit
- Division Quality of Plant Products, Department of Crop Sciences, University of Goettingen, Carl-Sprengel-Weg 1, 37075, Göttingen, Germany
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Cui J, Lamade E, Tcherkez G. Potassium deficiency reconfigures sugar export and induces catecholamine accumulation in oil palm leaves. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2020; 300:110628. [PMID: 33180708 DOI: 10.1016/j.plantsci.2020.110628] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2020] [Revised: 07/24/2020] [Accepted: 07/29/2020] [Indexed: 05/25/2023]
Abstract
Metabolic effects of potassium (K) deficiency have been described for nearly 70 years but specific effects of low K availability on sugar composition, sugar export rate and its relationship with other leaf metabolites are not very well documented. Having such pieces of information is nevertheless essential to identify metabolic signatures to monitor K fertilization. This is particularly true in oil-producing crop species such as oil palm (Elaeis guineensis), which is strongly K-demanding and involves high sugar dependence for fruit formation because of low carbon use efficiency in lipid synthesis. Here, we used metabolic analyses, measured sugar export rates with 13C isotopic labeling and examined the effects of K availability on both leaflet and rachis sugar metabolism in oil palm seedlings. We show that low K leads to a modification of sugar composition mostly in rachis and decreased sucrose and hexose export rates from leaflets. As a result, leaflets contained more starch and induced alternative pathways such as raffinose synthesis, although metabolites of the raffinose pathway remained quantitatively minor. The alteration of glycolysis by low K was compensated for by an increase in alternative sugar phosphate utilization by tyrosine metabolism, resulting in considerable amounts of tyramine and dopamine.
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Affiliation(s)
- Jing Cui
- Research School of Biology, ANU Joint College of Sciences, Australian National University, 2601, Canberra, ACT, Australia
| | - Emmanuelle Lamade
- Centre de coopération internationale en recherche agronomique pour le développement (CIRAD),UPR Systèmes de Pérennes; Université de Montpellier, Systèmes de Pérennes, CIRAD, 34398, Montpellier, France
| | - Guillaume Tcherkez
- Research School of Biology, ANU Joint College of Sciences, Australian National University, 2601, Canberra, ACT, Australia.
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