1
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Lu M, Liu H, Xiang R, Li J, Wu T, Deng M, Jia Y, Liu X, Yang Y, Ge Y, Cai T, Wu J, Ling Y, Zhou Y. Photocaging of N-pyridinyl amide scaffold-based PIM inhibitors for spatiotemporal controlled anticancer bioactivity. Bioorg Med Chem 2025; 124:118159. [PMID: 40186922 DOI: 10.1016/j.bmc.2025.118159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2024] [Revised: 03/10/2025] [Accepted: 03/11/2025] [Indexed: 04/07/2025]
Abstract
Photocaging is an ideal way to enable spatiotemporal control over the release of bioactive compounds for cancer treatments. In this work, a series of photocaged N-pyridinyl amide scaffold-based PIM inhibitors were developed by rendering the amino group unable to bind to the Asp128/Glu171 sites of PIM kinase with a photoremovable protecting group (PPG). Upon light irradiation, our studies revealed the structure-dependent photouncaging efficiency and screened out the photocaged PIM inhibitor FD1024-PPG. Its spatiotemporally controlled bioactivity was confirmed by cell-based in-vitro assays and revealed that it exerts the antiproliferation and induction of cell apoptosis through inhibition of PIM kinase upon light irradiation. Furthermore, the spatiotemporal control over the in-vivo anticancer activity was demonstrated using zebrafish xenograft model.
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Affiliation(s)
- Mingzhu Lu
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, Shanghai 200438, China
| | - Haifeng Liu
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, Shanghai 200438, China
| | - Ruiqing Xiang
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, Shanghai 200438, China
| | - Jianing Li
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, Shanghai 200438, China
| | - Tianze Wu
- Obstetrics and Gynecology Hospital, State Key Laboratory of Genetic Engineering, Institute of Reproduction and Development, Children's Hospital, Fudan University, Shanghai 200011, China
| | - Mingli Deng
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, Shanghai 200438, China
| | - Yu Jia
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, Shanghai 200438, China
| | - Xiaofeng Liu
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, Shanghai 200438, China
| | - Yongtai Yang
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, Shanghai 200438, China
| | - Yu Ge
- SD Chem, Inc., San Diego, CA 92128, USA
| | - Tong Cai
- ABA Chemicals Co., Ltd., Taicang, Jiangsu 215400, China
| | - Jianming Wu
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, Shanghai 200438, China.
| | - Yun Ling
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, Shanghai 200438, China; Zhuhai-Fudan Innovation Institute, Zhuhai, Guangdong 519000, China
| | - Yaming Zhou
- Shanghai Key Laboratory of Molecular Catalysis and Innovative Materials, Department of Chemistry, Fudan University, Shanghai 200438, China.
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2
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Li Y, Li C. Localized Orbital Scaling Correction to Linear-Response Time-Dependent Density Functional Approximations. J Chem Theory Comput 2025. [PMID: 40391868 DOI: 10.1021/acs.jctc.5c00404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/22/2025]
Abstract
The localized orbital scaling correction (LOSC) method, which was developed for eliminating the delocalization error in density functional approximations (DFAs), is extended to the linear-response regime for calculating excitation energies with time-dependent density functional theory (TDDFT). Corrections to the exchange-correlation kernel are derived within the frozen-orbitalet approximation. Extensive numerical tests on various data sets show that LOSC-DFAs are able to maintain the good performance of parent DFAs for valence excitations while systematically improving the excitation energies for Rydberg and charge-transfer excitations by reducing the delocalization error. For charge-transfer excitations, LOSC can produce correct asymptotic behaviors with the donor-acceptor separation R as well as the excitation energy at the infinite separation limit. Moreover, through the example of trans-polyacetylene oligomers, we demonstrate that the performance of LOSC does not deteriorate with increasing system size, holding promise for application in bulk systems.
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Affiliation(s)
- Ye Li
- Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
| | - Chen Li
- Beijing National Laboratory for Molecular Sciences, College of Chemistry and Molecular Engineering, Peking University, Beijing 100871, China
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3
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Širůček J, Le Guennic B, Damour Y, Loos PF, Jacquemin D. Excited-State Absorption: Reference Oscillator Strengths, Wave Function, and TDDFT Benchmarks. J Chem Theory Comput 2025; 21:4688-4703. [PMID: 40228100 DOI: 10.1021/acs.jctc.5c00159] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/16/2025]
Abstract
Excited-state absorption (ESA) corresponds to the transition between two electronic excited states and is a fundamental process for probing and understanding light-matter interactions. Accurate modeling of ESA is indeed often required to interpret time-resolved experiments. In this contribution, we present a dataset of 53 ESA oscillator strengths in three different gauges and the associated vertical transition energies between 71 excited states of 21 small- and medium-sized molecules from the QUEST database. In a few cases, we additionally investigated the effect of geometry relaxation on excited-state geometries. The reference values were obtained within the quadratic response (QR) CC3 formalism using eight different Dunning basis sets. We found that the d-aug-cc-pVTZ basis set is always adequate while its more compact double-ζ counterpart, d-aug-cc-pVDZ, performs well in most cases. These QR-CC3 data allow us to assess the performance of QR-TDDFT, with and without applying the Tamm-Dancoff approximation, using a panel of global and range-separated hybrids (B3LYP, BH&HLYP, CAM-B3LYP, LC-BLYP33, and LC-BLYP47), as well as several lower-order wave function methods, i.e., QR-CCSD, QR-CC2, EOM-CCSD, ISR-ADC(2), and ISR-ADC(3). We show that QR-TDDFT delivers acceptable errors for ESA oscillator strengths with CAM-B3LYP showing particular promise, especially for the largest molecules of our set, and in the Franck-Condon (FC) region. We also find that ISR-ADC(3) exhibits excellent performance in this region. When using excited-state optimal geometries, the relative performance of wave function-based approaches remains consistent with trends observed in the Franck-Condon region. However, for TD(A)-DFT, the accuracy varies more significantly, as the performance of different exchange-correlation functionals significantly depends on the chosen geometry.
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Affiliation(s)
- Jakub Širůček
- CNRS, CEISAM UMR 6230, Nantes Université, F-44000 Nantes, France
- CNRS, ISCR UMR 6226, Univ Rennes, F-35042 Rennes, France
| | | | - Yann Damour
- CNRS, UPS, Laboratoire de Chimie et Physique Quantiques UMR 5626, Université de Toulouse, F-31062 Toulouse, France
| | - Pierre-François Loos
- CNRS, UPS, Laboratoire de Chimie et Physique Quantiques UMR 5626, Université de Toulouse, F-31062 Toulouse, France
| | - Denis Jacquemin
- CNRS, CEISAM UMR 6230, Nantes Université, F-44000 Nantes, France
- Institut Universitaire de France (IUF), F-75005 Paris, France
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4
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Bintrim S, Carter-Fenk K. Optimal-Reference Excited State Methods: Static Correlation at Polynomial Cost with Single-Reference Coupled-Cluster Approaches. J Chem Theory Comput 2025; 21:4080-4094. [PMID: 40167607 PMCID: PMC12020369 DOI: 10.1021/acs.jctc.5c00172] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/30/2025] [Revised: 03/24/2025] [Accepted: 03/25/2025] [Indexed: 04/02/2025]
Abstract
Accurate yet efficient modeling of chemical systems with pronounced static correlation in their excited states remains a significant challenge in quantum chemistry, as most electronic structure methods that can adequately capture static correlation scale factorially with system size. Researchers are often left with no option but to use more affordable methods that may lack the accuracy required to model critical processes in photochemistry such as photolysis, photocatalysis, and nonadiabatic relaxation. A great deal of work has been dedicated to refining single-reference descriptions of static correlation in the ground state via "addition-by-subtraction" coupled cluster methods such as pair coupled cluster with double substitutions (pCCD), singlet-paired CCD (CCD0), triplet-paired CCD (CCD1), and CCD with frozen singlet- or triplet-paired amplitudes (CCDf0/CCDf1). By combining wave functions derived from these methods with the intermediate state representation (ISR), we gain insights into the extensibility of single-reference coupled cluster theory's coverage of static correlation to the excited state problem. Our CCDf1-ISR(2) approach is robust in the face of static correlation and provides enough dynamical correlation to accurately predict excitation energies to within about 0.2 eV in small organic molecules. We also highlight distinct advantages of the Hermitian ISR construction, such as the avoidance of pathological failures of equation-of-motion methods for excited state potential energy surface topology. Our results prompt us to continue exploring optimal single-reference theories (excited state approaches that leverage dependence on the initial reference wave function) as a potentially economical approach to the excited state static correlation problem.
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Affiliation(s)
- Sylvia
J. Bintrim
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15218, United States
| | - Kevin Carter-Fenk
- Department of Chemistry, University of Pittsburgh, Pittsburgh, Pennsylvania 15218, United States
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5
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Vassilyeva OY, Nesterova OV, Bieńko A, Komarnicka UK, Buvaylo EA, Vasylieva SM, Skelton BW, Nesterov DS. Heterometallic CuCd and Cu 2Zn complexes with o-vanillin and its Schiff-base derivative: slow magnetic relaxation and catalytic activity associated with Cu(II) centres. Dalton Trans 2025; 54:6117-6132. [PMID: 40100739 DOI: 10.1039/d4dt03571b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/20/2025]
Abstract
In this work, two novel heterometallic mixed-ligand mixed-anion complexes [CuIICdIIClL(o-Van)(OAc)]·3H2O (1) and [CuII2ZnIICl2L2(o-Van)(OAc)] (2) were prepared by reacting fine copper powder and Cd(II) or Zn(II) acetate with an ethanol solution of the Schiff-base ligand HL formed in situ in the condensation reaction of 2-hydroxy-3-methoxy-benzaldehyde (o-VanH) and CH3NH2·HCl. The compounds were thoroughly characterized by elemental analysis, FT-IR, UV/Vis and EPR spectroscopy, cyclic voltammetry, and single-crystal X-ray diffraction, revealing the neutral molecular nature of both the compounds. Catalytic properties of 1 and 2 were studied in the oxidation of hydrocarbons with H2O2 under mild conditions, showing the maximum reaction rate of 4 × 10-5 M s-1 and TOF up to 640 h-1. Both compounds undergo complex transformations in solution as evidenced by kinetic analysis and time-dependent UV/Vis spectroscopy, indicating that the reduced Cu(I) form of 1 is unexpectedly unfavorable. Complex 1 demonstrates slow magnetic relaxation dominated by the direct relaxation process between T = 1.8 and 7 K under an external DC field of 0.2 and 0.4 T, a very rarely observable effect in the coordination compounds of Cu(II). Complex 2 possesses weak ferromagnetism (J = 4.50 cm-1, zJ' = -0.201 cm-1 for H = -JS1S2 formalism) occurring through the Cu-O-Cu pathways. Theoretical CASSCF, DFT and TDDFT calculations were applied to investigate the electronic structures of 1 and 2 and rationalize their behavior in solution.
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Affiliation(s)
- Olga Yu Vassilyeva
- Department of Chemistry, Taras Shevchenko National University of Kyiv, 64/13 Volodymyrska Str., Kyiv 01601, Ukraine.
| | - Oksana V Nesterova
- Centro de Estudos de Engenharia Química, Instituto Superior de Engenharia de Lisboa, Instituto Politécnico de Lisboa, R. Conselheiro Emídio Navarro, 1, 1959-007 Lisboa, Portugal.
| | - Alina Bieńko
- Faculty of Chemistry, University of Wroclaw, 47 Joliot Curie, 50-137 Wroclaw, Poland
| | - Urszula K Komarnicka
- Faculty of Chemistry, University of Wroclaw, 47 Joliot Curie, 50-137 Wroclaw, Poland
| | - Elena A Buvaylo
- Department of Chemistry, Taras Shevchenko National University of Kyiv, 64/13 Volodymyrska Str., Kyiv 01601, Ukraine.
| | - Svitlana M Vasylieva
- National Technical University of Ukraine "Igor Sikorsky Kyiv Polytechnic Institute", 37 Beresteiskyi Ave., Kyiv 03056, Ukraine
| | - Brian W Skelton
- School of Molecular Sciences, M310, University of Western Australia, Perth, WA 6009, Australia
| | - Dmytro S Nesterov
- Centro de Estudos de Engenharia Química, Instituto Superior de Engenharia de Lisboa, Instituto Politécnico de Lisboa, R. Conselheiro Emídio Navarro, 1, 1959-007 Lisboa, Portugal.
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6
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Franzke YJ, Pausch A, Holzer C. Application of the noncollinear Scalmani-Frisch formalism to current density functional theory. J Chem Phys 2025; 162:084104. [PMID: 39998164 DOI: 10.1063/5.0246433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2024] [Accepted: 02/04/2025] [Indexed: 02/26/2025] Open
Abstract
We generalize the noncollinear formalism proposed by Scalmani and Frisch [J. Chem. Theory Comput. 8, 2193 (2012)] to include the particle and spin current densities for meta-generalized gradient approximations and local hybrid functionals. This allows us to fully include the impact of spin-orbit coupling in relativistic calculations and for applications to finite magnetic fields. For the latter, we use London atomic orbitals to ensure gauge origin invariance. It is shown that this formalism is superior to the more common canonical noncollinear approach in relativistic calculations, as it naturally includes all three spin current densities in the closed-shell limit and avoids the projection onto the spin magnetization vector. This is important to easily restore rotational invariance in this limit. In addition, the Scalmani-Frisch approach can be made numerically stable and may lead to a nonvanishing local magnetic torque. However, both formalisms are rotationally invariant for open-shell systems and in finite magnetic fields.
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Affiliation(s)
- Yannick J Franzke
- Otto Schott Institute of Materials Research, Friedrich Schiller University Jena, Löbdergraben 32, 07743 Jena, Germany
- Institute of Nanotechnology, Karlsruhe Institute of Technology (KIT), Kaiserstraße 12, 76131 Karlsruhe, Germany
| | - Ansgar Pausch
- Theoretical Chemistry, Vrije Universiteit Amsterdam, 1081HV Amsterdam, The Netherlands
| | - Christof Holzer
- Institute of Theoretical Solid State Physics, Karlsruhe Institute of Technology (KIT), Kaiserstraße 12, 76131 Karlsruhe, Germany
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7
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Chanda S, Saha S, Sen S. Benchmark computations of nearly degenerate singlet and triplet states of N-heterocyclic chromophores. II. Density-based methods. J Chem Phys 2025; 162:024111. [PMID: 39774883 DOI: 10.1063/5.0238105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2024] [Accepted: 12/23/2024] [Indexed: 01/11/2025] Open
Abstract
In this paper, we demonstrate the performance of several density-based methods in predicting the inversion of S1 and T1 states of a few N-heterocyclic triangulene based fused ring molecules (popularly known as INVEST molecules) with an eye to identify a well performing but cost-effective preliminary screening method. Both conventional linear-response time-dependent density functional theory (LR-TDDFT) and ΔSCF methods (namely maximum overlap method, square-gradient minimization method, and restricted open-shell Kohn-Sham) are considered for excited state computations using exchange-correlation (XC) functionals from different rungs of Jacob's ladder. A well-justified systematism is observed in the performance of the functionals when compared against fully internally contracted multireference configuration interaction singles and doubles and/or equation of motion coupled-cluster singles and doubles (EOM-CCSD), with the most important feature being the capture of spin-polarization in the presence of correlation. A set of functionals with the least mean absolute error is proposed for both the approaches, LR-TDDFT and ΔSCF, which can be more cost-effective alternatives for computations on synthesizable larger derivatives of the templates studied here. We have based our findings on extensive studies of three cyclazine-based molecular templates, with additional studies on a set of six related templates. Previous benchmark studies for subsets of the functionals were conducted against the domain-based local pair natural orbital-similarity transformed EOM-CCSD (STEOM-CCSD), which resulted in an inadequate evaluation due to deficiencies in the benchmark theory. The role of exact-exchange, spin-contamination, and spin-polarization in the context of DFT comes to the forefront in our studies and supports the numerical evaluation of XC functionals for these applications. Suitable connections are drawn to two and three state exciton models, which identify the minimal physics governing the interactions in these molecules.
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Affiliation(s)
- Shamik Chanda
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Nadia, Mohanpur 741246, WB, India
| | - Subhasish Saha
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Nadia, Mohanpur 741246, WB, India
- MLR Institute of Technology, Dundigal, Hyderabad 500043, Telangana, India
| | - Sangita Sen
- Department of Chemical Sciences, Indian Institute of Science Education and Research (IISER) Kolkata, Nadia, Mohanpur 741246, WB, India
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8
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Güleryüz C, Hasan DM, Awad MA, Waheeb AS, Hassan AU, Mohyuddin A, Kyhoiesh HAK, Alotaibi MT. Molecular engineering on tyrian puprle natural dye as TiO 2 based fined tuned photovoltaic dye material: DFT molecular analysis. J Mol Graph Model 2025; 134:108894. [PMID: 39486265 DOI: 10.1016/j.jmgm.2024.108894] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2024] [Revised: 10/13/2024] [Accepted: 10/17/2024] [Indexed: 11/04/2024]
Abstract
In this research, molecular modification is employed to see the enhancement in the efficiency of Tyrian Purple (TP), a natural dye, for organic photovoltaic materials. By using Density Functional Theory (DFT) based molecular modeling, seven new structures are designed with pi spacer to extend electron donor moieties. Teheir Frontier Molecular Orbital (FMO) analysis demonstartes their charges with a similar pattern of distributions over their Highest Occupied and Lowed Unocuupied Molecular Orbitals (HOMO/lUMO). This analysls also show their energy gaps (Egaps) to range around 2.97-3.02 eV. Their maximum absorption wavelength (λmax) demosntartes 486-490 nm range to indicate their tendency of absorbing light efficiently. Their Transition Density Matrix (TDM) analysis also reveals their facile electronic transitions without a significant charges over spacers. From calculating their photovoltaic paramters, their Light Harvesting Efficiency (LHE) reaches to 72.4-95.5 %. Also their Open Circuit Voltage (Voc) varies across 1.16-1.34 V. It is found that dyes actively adsorb onto TiO2 clusters to demonstrate their promise for tuning their Conduction Band (CB). This research is an effort for to evaluate the structural correlations to the develop photovoltaic materials through molecular-level design and optimization.
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Affiliation(s)
- Cihat Güleryüz
- Department of Opticianry, Altınbaş University, 34144, Istanbul, Turkey
| | - Duha M Hasan
- Department of Chemistry, College of Science, Al-Muthanna University, AL-Muthanna, Iraq
| | - Masar A Awad
- Department of Chemistry, College of Science, Al-Muthanna University, AL-Muthanna, Iraq
| | - Azal S Waheeb
- Department of Chemistry, College of Science, Al-Muthanna University, AL-Muthanna, Iraq; Inorganic Chemistry Group, Scientific Research Center, Al-Ayen University, Thi-Qar, Iraq
| | - Abrar U Hassan
- Department of Chemistry, School of Science, University of Management and Technology, Lahore, 54770, Pakistan.
| | - Ayesha Mohyuddin
- Department of Chemistry, School of Science, University of Management and Technology, Lahore, 54770, Pakistan
| | | | - Mohammed T Alotaibi
- Department of Chemistry, Turabah University College, Taif University, P.O. Box 11099, Taif, 21944, Saudi Arabia
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9
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Wu X, Xie X, Troisi A. Calibration of several first excited state properties for organic molecules through systematic comparison of TDDFT with experimental spectra. JOURNAL OF MATERIALS CHEMISTRY. C 2024; 12:18886-18892. [PMID: 39444434 PMCID: PMC11492815 DOI: 10.1039/d4tc03511a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/16/2024] [Accepted: 10/11/2024] [Indexed: 10/25/2024]
Abstract
Time-dependent density functional theory (TDDFT) is a powerful computational tool for investigating excitation properties in organic electronics, and it holds significant potential for high-throughput virtual screening (HTVS) in this field. While most benchmarks focus on excitation energies, less attention has been paid to evaluating the accuracy of computed oscillator strengths and exciton reorganization energies against experimental data. In this work, we provide a systematic approach to evaluate in parallel the accuracy of these three quantities on the basis of a suitable fitting of the experimental absorption spectra of 71 molecules in solution. After considering 18 computational methodologies, the results from the M06-2X/def2-TZVP/PCM method demonstrate the strongest correlation with experimental data across the desired properties. For HTVS, the M06-2X/6-31G(d)/PCM method appears to be a particularly convenient choice among all methodologies due to its balance of computational efficiency and accuracy. Our results provide an additional benchmark needed before employing TDDFT methods for the discovery and design of organic electronic molecules.
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Affiliation(s)
- Xia Wu
- Department of Chemistry, University of Liverpool Liverpool L69 3BX UK
| | - Xiaoyu Xie
- Qingdao Institute for Theoretical and Computational Sciences, School of Chemistry and Chemical Engineering, Shandong University Qingdao Shandong 266237 China
| | - Alessandro Troisi
- Department of Chemistry, University of Liverpool Liverpool L69 3BX UK
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10
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Ghosh D, Spinlove KE, Greene HJM, Lau N, Gómez S, Kao MH, Whitaker W, Clark IP, Malakar P, Worth GA, Oliver TAA, Fielding HH, Orr-Ewing AJ. Efficient Ground-State Recovery of UV-Photoexcited p-Nitrophenol in Aqueous Solution by Direct and Multistep Pathways. J Am Chem Soc 2024; 146:30443-30454. [PMID: 39450513 PMCID: PMC11544619 DOI: 10.1021/jacs.4c10965] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2024] [Revised: 10/16/2024] [Accepted: 10/17/2024] [Indexed: 10/26/2024]
Abstract
Nitroaromatic compounds are found in brown carbon aerosols emitted to the Earth's atmosphere by biomass burning, and are important organic chromophores for the absorption of solar radiation. Here, transient absorption spectroscopy spanning 100 fs-8 μs is used to explore the pH-dependent photochemical pathways for aqueous solutions of p-nitrophenol, chosen as a representative nitroaromatic compound. Broadband ultrafast UV-visible and infrared probes are used to characterize the excited states and intermediate species involved in the multistep photochemistry, and to determine their lifetimes under different pH conditions. The assignment of absorption bands, and the dynamical interpretation of our experimental measurements are supported by computational calculations. After 320 nm photoexcitation to the first bright state, which has 1ππ* character in the Franck-Condon region, and ultrafast (∼200 fs) structural relaxation in the adiabatic S1 state to a region with 1nπ* electronic character, the S1 p-nitrophenol population decays on a time scale of ∼12 ps. This decay involves competition between direct internal conversion to the S0 state (∼40%) and rapid intersystem crossing to the triplet manifold (∼60%). Population in the T1-state decays by excited-state proton transfer (ESPT) to the surrounding water and relaxation of the resulting triplet-state p-nitrophenolate anion to its S0 electronic ground state in ∼5 ns. Reprotonation of the S0-state p-nitrophenolate anion recovers p-nitrophenol in its electronic ground state. Overall recovery of the S0 state of aqueous p-nitrophenol via these competing pathways is close to 100% efficient. The experimental observations help to explain why nitroaromatic compounds such as p-nitrophenol resist photo-oxidative degradation in the environment.
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Affiliation(s)
- Deborin Ghosh
- School
of Chemistry, University of Bristol, Cantock’s Close, Bristol BS8 1TS, U.K.
| | - K. Eryn Spinlove
- Department
of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, U.K.
| | - Hallam J. M. Greene
- School
of Chemistry, University of Bristol, Cantock’s Close, Bristol BS8 1TS, U.K.
| | - Nicholas Lau
- Department
of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, U.K.
| | - Sandra Gómez
- Department
of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, U.K.
- Departamento
de Química Física, Universidad
de Salamanca, Salamanca, 37008, Spain
| | - Min-Hsien Kao
- School
of Chemistry, University of Bristol, Cantock’s Close, Bristol BS8 1TS, U.K.
| | - William Whitaker
- School
of Chemistry, University of Bristol, Cantock’s Close, Bristol BS8 1TS, U.K.
| | - Ian P. Clark
- Central
Laser Facility, Research Complex at Harwell, Science and Technology Facilities Council, Rutherford Appleton Laboratory,
Harwell Oxford, Didcot, Oxfordshire OX11 0QX, U.K.
| | - Partha Malakar
- Central
Laser Facility, Research Complex at Harwell, Science and Technology Facilities Council, Rutherford Appleton Laboratory,
Harwell Oxford, Didcot, Oxfordshire OX11 0QX, U.K.
| | - Graham A. Worth
- Department
of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, U.K.
| | - Thomas A. A. Oliver
- School
of Chemistry, University of Bristol, Cantock’s Close, Bristol BS8 1TS, U.K.
| | - Helen H. Fielding
- Department
of Chemistry, University College London, 20 Gordon Street, London WC1H 0AJ, U.K.
| | - Andrew J. Orr-Ewing
- School
of Chemistry, University of Bristol, Cantock’s Close, Bristol BS8 1TS, U.K.
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11
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Weber I, Langner J, Witek HA, Lee YP. Electronic Spectroscopy of Ovalene: Reassignment of the S2( B3u)- S0( Ag) Transition. J Phys Chem Lett 2024; 15:10696-10702. [PMID: 39413413 PMCID: PMC11514017 DOI: 10.1021/acs.jpclett.4c02494] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2024] [Revised: 10/08/2024] [Accepted: 10/14/2024] [Indexed: 10/18/2024]
Abstract
As part of our experiments to characterize solid para-hydrogen (para-H2) as a matrix host for electronic spectroscopy with potential applications in the ongoing quest for the carriers of the diffuse interstellar bands (DIB), we studied dispersed fluorescence and fluorescence excitation spectra of ovalene (C32H14), a planar polycyclic aromatic hydrocarbon (PAH) of D2h symmetry. Although generally in good agreement with previously reported data for jet-cooled C32H14, our results, in conjunction with quantum-chemical calculations, indicate that the observed spectral progressions are associated with the S2(B3u)-S0(Ag) electronic transition instead of the originally assigned S1-S0 transition for C32H14 in a supersonic jet, and that the previously reported origin band was misassigned and should be located at ∼21050 cm-1. The reassignment is further supported by the comparably long fluorescence lifetime of ∼1.7 μs. From an analysis of spectral features located >1600 cm-1 in the fluorescence excitation spectrum, we estimate an S2(B3u)-S3(B1g) energy gap of ∼350 cm-1.
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Affiliation(s)
- Isabelle Weber
- Department
of Applied Chemistry and Institute of Molecular Science, National Yang Ming Chiao Tung University, Hsinchu 300093, Taiwan
| | - Johanna Langner
- Department
of Applied Chemistry and Institute of Molecular Science, National Yang Ming Chiao Tung University, Hsinchu 300093, Taiwan
| | - Henryk A. Witek
- Department
of Applied Chemistry and Institute of Molecular Science, National Yang Ming Chiao Tung University, Hsinchu 300093, Taiwan
| | - Yuan-Pern Lee
- Department
of Applied Chemistry and Institute of Molecular Science, National Yang Ming Chiao Tung University, Hsinchu 300093, Taiwan
- Center
for Emergent Functional Matter Science, National Yang Ming Chiao Tung University, Hsinchu 300093, Taiwan
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12
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Calogero F, Wilczek L, Pinosa E, Gualandi A, Dorta R, Herrera A, Dai Y, Rossignol A, Negri F, Ziani Z, Fermi A, Ceroni P, Cozzi PG. Stable Meisenheimer Complexes as Powerful Photoreductants Readily Obtained from Aza-Hetero Aromatic Compounds. Angew Chem Int Ed Engl 2024; 63:e202411074. [PMID: 39078744 DOI: 10.1002/anie.202411074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/12/2024] [Indexed: 10/25/2024]
Abstract
Excited states of radical anions derived from the photoreduction of stable organic molecules are suggested to serve as potent reductants. However, excited states of these species are too short-lived to allow bimolecular quenching processes. Recently, the singlet excited state of Meisenheimer complexes, which possess a long-lived excited state, was identified as the competent species for the reduction of challenging organic substrates (-2.63 V vs. SCE, saturated calomel electrode). To produce reasonably stable and simply accessible different Meisenheimer complexes, the addition of nBuLi to readily available aromatic heterocycles was investigated, and the photoreactivity of the generated species was studied. In this paper, we present the straightforward preparation of a family of powerful photoreductants (*Eox<-3 V vs. SCE in their excited states, determined by DFT and time-dependent TD-DFT calculations; DFT, density functional theory) that can induce dehalogenation of electron-rich aryl chlorides and to form C-C bond through radical cyclization. Photophysical analyses and computational studies in combination with experimental mechanistic investigations demonstrate the ability of the adduct to act as a strong electron donor under visible light irradiation.
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Affiliation(s)
- Francesco Calogero
- Dipartimento di Chimica "Giacomo Ciamician" Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
- Center for Chemical Catalysis-C3 Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
| | - Leonie Wilczek
- Dipartimento di Chimica "Giacomo Ciamician" Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
- Institute of Organic Chemistry, University of Cologne, Greinstraße 4, 50939, Köln, Germany
| | - Emanuele Pinosa
- Dipartimento di Chimica "Giacomo Ciamician" Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
- Center for Chemical Catalysis-C3 Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
| | - Andrea Gualandi
- Dipartimento di Chimica "Giacomo Ciamician" Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
- Center for Chemical Catalysis-C3 Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
| | - Romano Dorta
- Department of Chemistry and Pharmacy, Friedrich-Alexander-Universität, Egerlandstr. 1, 91058, Erlangen, Germany
| | - Alberto Herrera
- Department of Chemistry and Pharmacy, Friedrich-Alexander-Universität, Egerlandstr. 1, 91058, Erlangen, Germany
| | - Yasi Dai
- Dipartimento di Chimica "Giacomo Ciamician" Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
- Center for Chemical Catalysis-C3 Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
| | - Arthur Rossignol
- Dipartimento di Chimica "Giacomo Ciamician" Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
| | - Fabrizia Negri
- Dipartimento di Chimica "Giacomo Ciamician" Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
- Center for Chemical Catalysis-C3 Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
| | - Zakaria Ziani
- Dipartimento di Chimica "Giacomo Ciamician" Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
| | - Andrea Fermi
- Dipartimento di Chimica "Giacomo Ciamician" Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
- Center for Chemical Catalysis-C3 Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
| | - Paola Ceroni
- Dipartimento di Chimica "Giacomo Ciamician" Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
- Center for Chemical Catalysis-C3 Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
| | - Pier Giorgio Cozzi
- Dipartimento di Chimica "Giacomo Ciamician" Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
- Center for Chemical Catalysis-C3 Alma Mater Studiorum-, Università di Bologna, Via Gobetti 85, 40129, Bologna, Italy
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13
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Kussmann J, Lemke Y, Weinbrenner A, Ochsenfeld C. A Constraint-Based Orbital-Optimized Excited State Method (COOX). J Chem Theory Comput 2024; 20:8461-8473. [PMID: 39345090 PMCID: PMC11465468 DOI: 10.1021/acs.jctc.4c00467] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2024] [Revised: 08/27/2024] [Accepted: 08/27/2024] [Indexed: 10/01/2024]
Abstract
In this work, we present a novel method to directly calculate targeted electronic excited states within a self-consistent field calculation based on constrained density functional theory (cDFT). The constraint is constructed from the static occupied-occupied and virtual-virtual parts of the excited state difference density from (simplified) linear-response time-dependent density functional theory calculations (LR-TDDFT). Our new method shows a stable convergence behavior, provides an accurate excited state density adhering to the Aufbau principle, and can be solved within a restricted SCF for singlet excitations to avoid spin contamination. This also allows the straightforward application of post-SCF electron-correlation methods like MP2 or direct RPA methods. We present the details of our constraint-based orbital-optimized excited state method (COOX) and compare it to similar schemes. The accuracy of excitation energies will be analyzed for a benchmark of systems, while the quality of the resulting excited state densities is investigated by evaluating excited state nuclear forces and excited state structure optimizations. We also investigate the performance of the proposed COOX method for long-range charge transfer excitations and conical intersections with the ground-state.
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Affiliation(s)
- Jörg Kussmann
- Chair
of Theoretical Chemistry, Department of Chemistry, Ludwig-Maximilians-Universität in Munich (LMU), München D-81377, Germany
| | - Yannick Lemke
- Chair
of Theoretical Chemistry, Department of Chemistry, Ludwig-Maximilians-Universität in Munich (LMU), München D-81377, Germany
| | - Anthea Weinbrenner
- Chair
of Theoretical Chemistry, Department of Chemistry, Ludwig-Maximilians-Universität in Munich (LMU), München D-81377, Germany
| | - Christian Ochsenfeld
- Chair
of Theoretical Chemistry, Department of Chemistry, Ludwig-Maximilians-Universität in Munich (LMU), München D-81377, Germany
- Max-Planck-Institute
for Solid State Research, Stuttgart D-70659, Germany
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14
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Gelabert R, Moreno M, Lluch JM. Effect of Leaving Centrosymmetric Character on Spectral Properties in Mono-, Bi-, and Triphotonic Absorption Spectroscopies. ACS OMEGA 2024; 9:41968-41977. [PMID: 39398148 PMCID: PMC11465556 DOI: 10.1021/acsomega.4c06922] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/28/2024] [Accepted: 08/23/2024] [Indexed: 10/15/2024]
Abstract
Numerical simulations of the absorption bands of photoswitch E-o-tetrafluoroazobenzene in DMSO solution under one-, two-, and three-photon absorption conditions combined with the analysis of the behavior of transition probability under distortion of planarity reveal many similarities between the mono- and triphoton spectroscopic behaviors with a two-photon spectrum being set apart. The position of the absorption peak for the studied nπ* and ππ* transitions appears shifted to lower energies (longer wavelengths) than the conventional estimate based on vertical excitation from the ground-state potential energy minimum.
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Affiliation(s)
- Ricard Gelabert
- Departament
de Química, Universitat Autònoma
de Barcelona, 08193 Bellaterra, Barcelona, Spain
| | - Miquel Moreno
- Departament
de Química, Universitat Autònoma
de Barcelona, 08193 Bellaterra, Barcelona, Spain
| | - José M. Lluch
- Departament
de Química, Universitat Autònoma
de Barcelona, 08193 Bellaterra, Barcelona, Spain
- Institut
de Biotecnologia i de Biomedicina, Universitat
Autònoma de Barcelona, 08193 Bellaterra, Barcelona, Spain
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15
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Gardner S, Carrano CJ, Mao Y, Küpper FC, Cooksy AL. DFT and TD-DFT studies to elucidate the configurational isomers of ferric aerobactin, ferric petrobactin, and their ferric photoproducts. Biometals 2024:10.1007/s10534-024-00638-6. [PMID: 39356411 DOI: 10.1007/s10534-024-00638-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2024] [Accepted: 09/10/2024] [Indexed: 10/03/2024]
Abstract
Iron-chelating siderophores such as aerobactin and petrobactin are produced by marine bacteria to sequester iron under low iron stress. Those that contain a citrate moiety undergo light-catalyzed ligand-to-metal charge transfer, inducing decarboxylation and formation of photoproducts. In this work, we employed density functional theory to obtain the optimized geometries and determine the relative energies and geometric parameters of different configurations of Fe(III)-coordinated aerobactin, petrobactin, and their photoproducts. Time-dependent density functional theory was then used to compute the UV-Vis absorption spectra of these species, and the comparison against experimental spectra further elucidated the structural configurations most likely to be adopted by these compounds. Frequency calculations provided Fe-O force constants on the same order as other siderophores. The relative energies and predicted spectra support the cis-cis C-fac configuration for ferric aerobactin and the cis-trans C-mer configuration for its photoproduct, while only mild support is found for specific configurations of the ferric petrobactin structures (meta-mer and meta-fac for the precursor, cis-cis para-fac for the photoproduct). The predicted ferric petrobactin spectra are found to be fairly insensitive to the configuration of the ferric complex.
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Affiliation(s)
- Sasha Gardner
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA, 92182-1030, USA
| | - Carl J Carrano
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA, 92182-1030, USA
| | - Yuezhi Mao
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA, 92182-1030, USA
| | - Frithjof C Küpper
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA, 92182-1030, USA
- School of Biological Sciences, University of Aberdeen, Cruickshank Building, St. Machar Drive, Aberdeen, AB24 3UU, Scotland, UK
- Department of Chemistry, Marine Biodiscovery Centre, University of Aberdeen, Aberdeen, AB24 3UE, Scotland, UK
| | - Andrew L Cooksy
- Department of Chemistry and Biochemistry, San Diego State University, San Diego, CA, 92182-1030, USA.
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16
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Jones AC, Goerigk L. Exploring non-covalent interactions in excited states: beyond aromatic excimer models. Phys Chem Chem Phys 2024; 26:25192-25207. [PMID: 39314200 DOI: 10.1039/d4cp03214d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/25/2024]
Abstract
Time-dependent density functional theory (TD-DFT) offers a relatively accurate and inexpensive approach for excited state calculations. However, conventional TD-DFT may suffer from the same poor description of non-covalent interactions (NCIs) which is known from ground-state DFT. In this work we present a comprehensive benchmark study of TD-DFT for excited-state NCIs. This is achieved by calculating dissociation curves for excited complexes ('exciplexes'), whose binding strength depends on excited-state NCIs including electrostatics, Pauli repulsion, charge-transfer, and London dispersion. Reference dissociation curves are calculated with the reasonably accurate wave function method SCS-CC2/CBS(3,4) which is used to benchmark a range of TD-DFT methods. Additionally, we test the effect of ground-state dispersion corrections, DFT-D3(BJ) and VV10, for exciplex binding. Overall, we find that TD-DFT methods generally under-bind exciplexes which can be explained by the missing dispersion forces. Underbinding errors reduce going up the rungs of Jacob's ladder. Further, the D3(BJ) dispersion correction is essential for good accuracy in most cases. Likewise, the VV10-type non-local kernel yields relatively low errors and has comparable performance in either its fully self-consistent implementation or as a post-SCF additive correction, but its impact is solely on ground-state energies and not on excitation energies. From our analysis, the most robust TD-DFT methods for exciplexes with localised excitations in their equilibrium and non-equilibrium geometries are the double hybrids B2GP-PLYP-D3(BJ) and B2PLYP-D3(BJ). Their range-separated versions ωB2(GP-)PLYP-D3(BJ) or the spin-opposite scaled, range-separated double hybrid SOS-ωB88PP86 can be recommended when charge transfer plays a role in the excitations. We also identify the need for a state-specific dispersion correction as the next step for improved TD-DFT performance.
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Affiliation(s)
- Ariel C Jones
- School of Chemistry, The University of Melbourne, Parkville, Australia.
| | - Lars Goerigk
- School of Chemistry, The University of Melbourne, Parkville, Australia.
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17
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Elayan IA, Brown A. Non-Degenerate Two-Photon Absorption of Fluorescent Protein Chromophores. J Phys Chem A 2024; 128:7511-7523. [PMID: 39192559 DOI: 10.1021/acs.jpca.3c08402] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/29/2024]
Abstract
Two-photon absorption (2PA), where a pair of photons are absorbed simultaneously, is recognized as a potent bioimaging technique, which depends on the quantified 2PA probability, defined as cross-section (σ2PA). The absorbed photons either have equivalent (ω1 = ω2) or different frequencies (ω1 ≠ ω2), where the former is degenerate 2PA (D-2PA) and the latter is nondegenerate 2PA (ND-2PA). ND-2PA is of particular interest since it is a promising imaging technology with flexibility of photon frequencies and enhanced cross sections, however, it remains a relatively unexplored area compared to D-2PA. This work utilizes time-dependent density functional theory (TD-DFT) and second-order approximate coupled-cluster with the resolution-of-identity approximation (RI-CC2), for the excitation from S0 to S1, to investigate σD-2PA and σND-2PA of FP chromophore models. Interestingly, comparing CAM-B3LYP with the RI-CC2 computations shows qualitative and, in fact, near quantitative agreement in the computed improvements of σND-2PA for comparable (relative) frequency detunings, despite the known underestimations of 2PA cross sections, for TD-DFT results relative to RI-CC2 values. As expected from the 2-state model, the computed values of σND-2PA are quantitatively larger than σD-2PA, where chromophores with the largest values of σD-2PA show greater potential for σND-2PA improvement. Anionic chromophores demonstrated improvements up to 14%, while substantial enhancements were observed in neutral chromophores with some achieving a 30% increase. This work investigates the ND-2PA photophysical characteristics of FP chromophores and identifies qualitative patterns in the computed properties of ND-2PA relative to D-2PA.
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Affiliation(s)
- Ismael A Elayan
- Department of Chemistry, University of Alberta, Edmonton T6G 2G2, Alberta, Canada
| | - Alex Brown
- Department of Chemistry, University of Alberta, Edmonton T6G 2G2, Alberta, Canada
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18
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Gray M, Bowling PE, Herbert JM. Comment on "Benchmarking Basis Sets for Density Functional Theory Thermochemistry Calculations: Why Unpolarized Basis Sets and the Polarized 6-311G Family Should Be Avoided". J Phys Chem A 2024; 128:7739-7745. [PMID: 39190891 DOI: 10.1021/acs.jpca.4c00283] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/29/2024]
Affiliation(s)
- Montgomery Gray
- Department of Chemistry & Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
| | - Paige E Bowling
- Department of Chemistry & Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
- Biophysics Graduate Program, The Ohio State University, Columbus, Ohio 43210, United States
| | - John M Herbert
- Department of Chemistry & Biochemistry, The Ohio State University, Columbus, Ohio 43210, United States
- Biophysics Graduate Program, The Ohio State University, Columbus, Ohio 43210, United States
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19
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Knysh I, Lipparini F, Blondel A, Duchemin I, Blase X, Loos PF, Jacquemin D. Reference CC3 Excitation Energies for Organic Chromophores: Benchmarking TD-DFT, BSE/ GW, and Wave Function Methods. J Chem Theory Comput 2024. [PMID: 39237472 DOI: 10.1021/acs.jctc.4c00906] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/07/2024]
Abstract
To expand the QUEST database of highly accurate vertical transition energies, we consider a series of large organic chromogens ubiquitous in dye chemistry, such as anthraquinone, azobenzene, BODIPY, and naphthalimide. We compute, at the CC3 level of theory, the singlet and triplet vertical transition energies associated with the low-lying excited states. This leads to a collection of more than 120 new highly accurate excitation energies. For several singlet transitions, we have been able to determine CCSDT transition energies with a compact basis set, finding minimal deviations from the CC3 values for most states. Subsequently, we employ these reference values to benchmark a series of lower-order wave function approaches, including the popular ADC(2) and CC2 schemes, as well as time-dependent density-functional theory (TD-DFT), both with and without applying the Tamm-Dancoff approximation (TDA). At the TD-DFT level, we evaluate a large panel of global, range-separated, local, and double hybrid functionals. Additionally, we assess the performance of the Bethe-Salpeter equation (BSE) formalism relying on both G0W0 and evGW quasiparticle energies evaluated from various starting points. It turns out that CC2 and ADC(2.5) are the most accurate models among those with respective O ( N 5 ) and O ( N 6 ) scalings with system size. In contrast, CCSD does not outperform CC2. The best performing exchange-correlation functionals include BMK, M06-2X, M06-SX, CAM-B3LYP, ωB97X-D, and LH20t, with average deviations of approximately 0.20 eV or slightly below. Errors on vertical excitation energies can be further reduced by considering double hybrids. Both SOS-ωB88PP86 and SOS-ωPBEPP86 exhibit particularly attractive performances with overall quality on par with CC2, whereas PBE0-DH and PBE-QIDH are only slightly less efficient. BSE/evGW calculations based on Kohn-Sham starting points have been found to be particularly effective for singlet transitions, but much less for their triplet counterparts.
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Affiliation(s)
- Iryna Knysh
- Nantes Université, CNRS, CEISAM UMR 6230, F-44000 Nantes, France
| | - Filippo Lipparini
- Dipartimento di Chimica e Chimica Industriale, University of Pisa, Via Moruzzi 3, 56124 Pisa, Italy
| | - Aymeric Blondel
- Nantes Université, CNRS, CEISAM UMR 6230, F-44000 Nantes, France
| | - Ivan Duchemin
- Université Grenoble Alpes, CEA, IRIG-MEM-L Sim, 38054 Grenoble, France
| | - Xavier Blase
- Université Grenoble Alpes, CNRS, Institut NEEL, F-38042 Grenoble, France
| | - Pierre-François Loos
- Laboratoire de Chimie et Physique Quantiques, Université de Toulouse, CNRS, UPS, 31062 Toulouse, France
| | - Denis Jacquemin
- Nantes Université, CNRS, CEISAM UMR 6230, F-44000 Nantes, France
- Institut Universitaire de France (IUF), F-75005 Paris, France
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20
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Szabó PB, Schätzle Z, Entwistle MT, Noé F. An Improved Penalty-Based Excited-State Variational Monte Carlo Approach with Deep-Learning Ansatzes. J Chem Theory Comput 2024. [PMID: 39213603 PMCID: PMC11428158 DOI: 10.1021/acs.jctc.4c00678] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/04/2024]
Abstract
We introduce several improvements to the penalty-based variational quantum Monte Carlo (VMC) algorithm for computing electronic excited states of Entwistle et al. [Nat. Commun. 14, 274 (2023)] and demonstrate that the accuracy of the updated method is competitive with other available excited-state VMC approaches. A theoretical comparison of the computational aspects of these algorithms is presented, where several benefits of the penalty-based method are identified. Our main contributions include an automatic mechanism for tuning the scale of the penalty terms, an updated form of the overlap penalty with proven convergence properties, and a new term that penalizes the spin of the wave function, enabling the selective computation of states with a given spin. With these improvements, along with the use of the latest self-attention-based ansatz, the penalty-based method achieves a mean absolute error below 1 kcal/mol for the vertical excitation energies of a set of 26 atoms and molecules, without relying on variance matching schemes. Considering excited states along the dissociation of the carbon dimer, the accuracy of the penalty-based method is on par with that of natural-excited-state (NES) VMC, while also providing results for additional sections of the potential energy surface, which were inaccessible with the NES method. Additionally, the accuracy of the penalty-based method is improved for a conical intersection of ethylene, with the predicted angle of the intersection agreeing well with both NES-VMC and multireference configuration interaction.
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Affiliation(s)
- P Bernát Szabó
- Department of Mathematics and Computer Science, FU Berlin, Arnimallee 6, Berlin 14195, Germany
| | - Zeno Schätzle
- Department of Mathematics and Computer Science, FU Berlin, Arnimallee 6, Berlin 14195, Germany
| | - Michael T Entwistle
- Department of Mathematics and Computer Science, FU Berlin, Arnimallee 6, Berlin 14195, Germany
| | - Frank Noé
- Department of Mathematics and Computer Science, FU Berlin, Arnimallee 6, Berlin 14195, Germany
- Microsoft Research AI4Science, Karl-Liebknecht Str. 32, Berlin 10178, Germany
- Department of Physics, FU Berlin, Arnimallee 14, Berlin 14195, Germany
- Department of Chemistry, Rice University, Houston, Texas 77005, United States
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21
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Myers CA, Miyazaki K, Trepl T, Isborn CM, Ananth N. GPU-accelerated on-the-fly nonadiabatic semiclassical dynamics. J Chem Phys 2024; 161:084114. [PMID: 39193942 DOI: 10.1063/5.0223628] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/16/2024] [Accepted: 08/11/2024] [Indexed: 08/29/2024] Open
Abstract
GPU-accelerated on-the-fly nonadiabatic dynamics is enabled by interfacing the linearized semiclassical dynamics approach with the TeraChem electronic structure program. We describe the computational workflow of the "PySCES" code interface, a Python code for semiclassical dynamics with on-the-fly electronic structure, including parallelization over multiple GPU nodes. We showcase the abilities of this code and present timings for two benchmark systems: fulvene solvated in acetonitrile and a charge transfer system in which a photoexcited zinc-phthalocyanine donor transfers charge to a fullerene acceptor through multiple electronic states on an ultrafast timescale. Our implementation paves the way for an efficient semiclassical approach to model the nonadiabatic excited state dynamics of complex molecules, materials, and condensed phase systems.
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Affiliation(s)
- Christopher A Myers
- Department of Chemistry and Biochemistry, University of California Merced, Merced, California 95343, USA
| | - Ken Miyazaki
- Department of Chemistry, Northwestern University, Evanston, Illinois 60208, USA
| | - Thomas Trepl
- Theoretical Physics IV, University of Bayreuth, 95440 Bayreuth, Germany
| | - Christine M Isborn
- Department of Chemistry and Biochemistry, University of California Merced, Merced, California 95343, USA
| | - Nandini Ananth
- Department of Chemistry and Chemical Biology, Baker Laboratory, Cornell University, Ithaca, New York 14853, USA
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22
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Khan M, Khalid M, Murtaza S, Braga AAC, Alrashidi KA, Ahmed S. Exploration of the effect of multiple acceptor and π-spacer moieties coupled to indolonaphthyridine core for promising organic photovoltaic properties: a first principles framework. Sci Rep 2024; 14:19820. [PMID: 39191819 PMCID: PMC11350145 DOI: 10.1038/s41598-024-70457-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/28/2024] [Accepted: 08/16/2024] [Indexed: 08/29/2024] Open
Abstract
Herein, the indolonaphthyridine-based molecules (INDTD1-INDTD8) with A1-π-A2-π-A1 configuration were designed by the end-capped modification of INDTR reference with various acceptors. The density functional theory (DFT) and time-dependent DFT (TD-DFT) analyses at M06/6-31G(d,p) level were reported in this research to explore their optoelectronic and photovoltaic features. Their geometrical structures were initially optimized at the afore-said level and followed by various calculations such as the frontier molecular orbitals (FMOs), UV-Visible, density of states (DOS), transition density matrix (TDM), binding energy (Eb), open circuit voltage (Voc) and fill factor (FF). Moreover, their global reactivity parameters (GRPs) were depicted by using the HOMO-LUMO band gaps obtained from the FMOs study. The tailored molecules demonstrated lower band gaps (2.183-2.269 eV) than INDTR (2.288 eV). They also showed bathochromic shifts in the visible region in chloroform (735.937-762.318 nm) and gas phase (710.384-729.571 nm) as compared to INDTR (724.710 and 698.498 nm, respectively). Further, intramolecular charge transfer (ICT) was demonstrated via the DOS and TDM graphical maps. Among all the entitled chromophores, INDTD7 showed significantly reduced band gap (2.183 eV), red-shifted absorption value (760.914 nm) in chloroform solvent and minimal Eb value (0.554 eV). The presence of -SO3H groups on the terminal acceptors of INDTD7 may enhance the mobility of charges. The results suggested that the newly designed chromophores can be effective candidates for the future organic solar cell applications. Moreover, this study may encourage the experimentalists to develop photovoltaic materials.
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Affiliation(s)
- Mashal Khan
- Institute of Chemistry, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan, 64200, Pakistan
- Centre for Theoretical and Computational Research, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan, 64200, Pakistan
| | - Muhammad Khalid
- Institute of Chemistry, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan, 64200, Pakistan.
- Centre for Theoretical and Computational Research, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan, 64200, Pakistan.
| | - Shahzad Murtaza
- Institute of Chemistry, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan, 64200, Pakistan
- Centre for Theoretical and Computational Research, Khwaja Fareed University of Engineering & Information Technology, Rahim Yar Khan, 64200, Pakistan
| | - Ataualpa Albert Carmo Braga
- Departamento de Química Fundamental, Instituto de Química, Universidade de São Paulo, Av. Prof. Lineu Prestes, 748, São Paulo, 05508-000, Brazil
| | - Khalid Abdullah Alrashidi
- Department of Chemistry, College of Science, King Saud University, P.O. Box 2455, 11451, Riyadh, Saudi Arabia
| | - Sarfraz Ahmed
- Harvard Medical School, Wellman Center for Photomedicine, Massachusetts General Hospital, Boston, MA, 02114, USA
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23
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Troß J, Arias-Martinez JE, Carter-Fenk K, Cole-Filipiak NC, Schrader P, McCaslin LM, Head-Gordon M, Ramasesha K. Femtosecond Core-Level Spectroscopy Reveals Involvement of Triplet States in the Gas-Phase Photodissociation of Fe(CO) 5. J Am Chem Soc 2024; 146:22711-22723. [PMID: 39092878 DOI: 10.1021/jacs.4c07523] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/04/2024]
Abstract
Excitation of iron pentacarbonyl [Fe(CO)5], a prototypical photocatalyst, at 266 nm causes the sequential loss of two CO ligands in the gas phase, creating catalytically active, unsaturated iron carbonyls. Despite numerous studies, major aspects of its ultrafast photochemistry remain unresolved because the early excited-state dynamics have so far eluded spectroscopic observation. This has led to the long-held assumption that ultrafast dissociation of gas-phase Fe(CO)5 proceeds exclusively on the singlet manifold. Herein, we present a combined experimental-theoretical study employing ultrafast extreme ultraviolet transient absorption spectroscopy near the Fe M2,3-edge, which features spectral evolution on 100 fs and 3 ps time scales, alongside high-level electronic structure theory, which enables characterization of the molecular geometries and electronic states involved in the ultrafast photodissociation of Fe(CO)5. We assign the 100 fs evolution to spectroscopic signatures associated with intertwined structural and electronic dynamics on the singlet metal-centered states during the first CO loss and the 3 ps evolution to the competing dissociation of Fe(CO)4 along the lowest singlet and triplet surfaces to form Fe(CO)3. Calculations of transient spectra in both singlet and triplet states as well as spin-orbit coupling constants along key structural pathways provide evidence for intersystem crossing to the triplet ground state of Fe(CO)4. Thus, our work presents the first spectroscopic detection of transient excited states during ultrafast photodissociation of gas-phase Fe(CO)5 and challenges the long-standing assumption that triplet states do not play a role in the ultrafast dynamics.
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Affiliation(s)
- Jan Troß
- Combustion Research Facility, Sandia National Laboratories, Livermore, California 94550, United States
| | - Juan E Arias-Martinez
- Kenneth S. Pitzer Center for Theoretical Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Kevin Carter-Fenk
- Kenneth S. Pitzer Center for Theoretical Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Neil C Cole-Filipiak
- Combustion Research Facility, Sandia National Laboratories, Livermore, California 94550, United States
| | - Paul Schrader
- Combustion Research Facility, Sandia National Laboratories, Livermore, California 94550, United States
| | - Laura M McCaslin
- Combustion Research Facility, Sandia National Laboratories, Livermore, California 94550, United States
| | - Martin Head-Gordon
- Kenneth S. Pitzer Center for Theoretical Chemistry, University of California, Berkeley, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Krupa Ramasesha
- Combustion Research Facility, Sandia National Laboratories, Livermore, California 94550, United States
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24
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Mandal A, Berquist EJ, Herbert JM. A new parameterization of the DFT/CIS method with applications to core-level spectroscopy. J Chem Phys 2024; 161:044114. [PMID: 39051834 DOI: 10.1063/5.0220535] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2024] [Accepted: 07/08/2024] [Indexed: 07/27/2024] Open
Abstract
Time-dependent density functional theory (TD-DFT) within a restricted excitation space is an efficient means to compute core-level excitation energies using only a small subset of the occupied orbitals. However, core-to-valence excitation energies are significantly underestimated when standard exchange-correlation functionals are used, which is partly traceable to systemic issues with TD-DFT's description of Rydberg and charge-transfer excited states. To mitigate this, we have implemented an empirically modified combination of configuration interaction with single substitutions (CIS) based on Kohn-Sham orbitals, which is known as "DFT/CIS." This semi-empirical approach is well-suited for simulating x-ray near-edge spectra, as it contains sufficient exact exchange to model charge-transfer excitations yet retains DFT's low-cost description of dynamical electron correlation. Empirical corrections to the matrix elements enable semi-quantitative simulation of near-edge x-ray spectra without the need for significant a posteriori shifts; this should be useful in complex molecules and materials with multiple overlapping x-ray edges. Parameter optimization for use with a specific range-separated hybrid functional makes this a black-box method intended for both core and valence spectroscopy. Results herein demonstrate that realistic K-edge absorption and emission spectra can be obtained for second- and third-row elements and 3d transition metals, with promising results for L-edge spectra as well. DFT/CIS calculations require absolute shifts that are considerably smaller than what is typical in TD-DFT.
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Affiliation(s)
- Aniket Mandal
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA
| | | | - John M Herbert
- Department of Chemistry and Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA
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25
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Ormazábal-Toledo R, Rezende MC, Vidal M. The Simulation of Solvent Polarizabilities and Dipolarities with Polarizable Continuum Model. J Phys Chem B 2024; 128:7208-7218. [PMID: 38989920 DOI: 10.1021/acs.jpcb.4c01521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/12/2024]
Abstract
The ability of polarizable continuum models (PCM) to simulate nonspecific solvent effects (dipolarity and polarizability) was evaluated by calculating the transition energies of 1,1,10,10-tetrabutyldecanonaene (ttbp9) and 2-N,N-dimethylamino-7-nitrofluorene (DMANF), basis of Catalán's polarizability (SP) and dipolarity (SdP) solvent scales, respectively. Time-dependent density-functional theory (TD-DFT) calculations were performed at different levels of theory, employing four basis sets in 10 different solvents, covering the full range of the normalized SP and SdP scales. Transition energies were calculated using linear response (LR) and corrected linear response (cLR2) schemes. Although these methods yielded variable mean absolute errors, the LR-PCM calculations reproduced medium polarizability and dipolarity trends. While calculated ttbp9 transition energies correlated with SP and Laurence's dispersion-induced (DI) scales, the DMANF transition energies correlated poorly with SdP or Laurence's ES dipolarity scales. This result agrees with the fact that DMANF solvatochromism is "contaminated" by solvent polarizability and HB acidity. The incorporation of SP or DI contributions led to much better (r2 > 0.95) correlations with the DMANF-calculated transitions. The results offer a clearer picture of the limitations of continuum models in simulating the behavior of solvatochromic dyes in solution by pointing out their poor performance when specific solvent effects, such as hydrogen-bond interactions, play a significant role in their solvatochromism.
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Affiliation(s)
- Rodrigo Ormazábal-Toledo
- Departamento de Química Orgánica y Fisicoquímica, Facultad de Ciencias Químicas y Farmacéuticas, Universidad de Chile, Dr. Carlos Lorca Tobar 964, Independencia, Región Metropolitana, Casilla 233, Santiago 8380494, Chile
| | - Marcos Caroli Rezende
- Facultad de Química y Biología, Universidad de Santiago de Chile, Av. Bernardo O'Higgins 3363, Santiago 9160000, Chile
| | - Matías Vidal
- Facultad de Química y Biología, Universidad de Santiago de Chile, Av. Bernardo O'Higgins 3363, Santiago 9160000, Chile
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26
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Dantas Filho RV, de Queiroz TB. Screened optimally tuned range separated hybrid functional for solvated low bandgap molecular systems. J Chem Phys 2024; 161:034109. [PMID: 39007381 DOI: 10.1063/5.0213688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2024] [Accepted: 06/27/2024] [Indexed: 07/16/2024] Open
Abstract
The description of electronic properties of low bandgap molecular system is often performed by using density functional theory (DFT) and time dependent (TD) DFT calculations with the optimally tuned range-separated hybrid (OT-RSH) functional, as it contains the necessary ingredients to reliably predict charge transfer excitations. However, the range separating parameter (ω) is system-dependent and its optimization, including the chemical environment, is intricate. Refaely-Abramson et al. demonstrated that the gap renormalization in molecular crystals, a ground state property, can be represented by an OT-RSH functional screened by ɛstatic [Phys. Rev. B 88, 081204(R) (2013)], the zero frequency scalar dielectric constant. In this study, we propose the use of an OT-RSH functional screened by the scalar dielectric constant in the high frequency limit (OT-sRSH), ɛ∞, an appropriate constraint for vertical ionization energies or excitations in a dielectric environment. We have performed calculations for S,N-heteroacene derivatives in tetrahydrofuran and dichloromethane. The "unscreened" OT-RSH functional tends to underestimate experimental ionization potentials (IPs) and optical gaps (Egs) by up to 1.5 and 0.5 eV, respectively. In contrast, OT-sRSH functional calculations underestimate IPs and Egs by only 0.4 and 0.2 eV. We also compared the OT-sRSH results to explicitly solvated OT-RSH functional calculations for oligothiophenes in dioxane, benzene in ammonia, and methylene blue in water. We observe that both the approaches perform similarly for weakly interacting intermolecular systems and deviate for solvent-solute interacting systems, as expected. In conclusion, the OT-sRSH functional can describe molecular systems with environmental polarization effects accurately, a step toward describing realistic molecular systems.
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Affiliation(s)
- Reinaldo V Dantas Filho
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, Av. dos Estados 5001, 09510-580 Santo André-SP, Brazil
| | - Thiago B de Queiroz
- Centro de Ciências Naturais e Humanas, Universidade Federal do ABC, Av. dos Estados 5001, 09510-580 Santo André-SP, Brazil
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27
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Hancock AC, Giudici E, Goerigk L. How do spin-scaled double hybrids designed for excitation energies perform for noncovalent excited-state interactions? An investigation on aromatic excimer models. J Comput Chem 2024; 45:1667-1681. [PMID: 38553847 DOI: 10.1002/jcc.27351] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Revised: 03/07/2024] [Accepted: 03/12/2024] [Indexed: 06/04/2024]
Abstract
Time-dependent double hybrids with spin-component or spin-opposite scaling to their second-order perturbative correlation correction have demonstrated competitive robustness in the computation of electronic excitation energies. Some of the most robust are those recently published by our group (M. Casanova-Páez, L. Goerigk, J. Chem. Theory Comput. 2021, 20, 5165). So far, the implementation of these functionals has not allowed correctly calculating their ground-state total energies. Herein, we define their correct spin-scaled ground-state energy expressions which enables us to test our methods on the noncovalent excited-state interaction energies of four aromatic excimers. A range of 22 double hybrids with and without spin scaling are compared to the reasonably accurate wavefunction reference from our previous work (A. C. Hancock, L. Goerigk, RSC Adv. 2023, 13, 35964). The impact of spin scaling is highly dependent on the underlying functional expression, however, the smallest overall errors belong to spin-scaled functionals with range separation: SCS- and SOS- ω PBEPP86, and SCS-RSX-QIDH. We additionally determine parameters for DFT-D3(BJ)/D4 ground-state dispersion corrections of these functionals, which reduce errors in most cases. We highlight the necessity of dispersion corrections for even the most robust TD-DFT methods but also point out that ground-state based corrections are insufficient to completely capture dispersion effects for excited-state interaction energies.
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Affiliation(s)
- Amy C Hancock
- School of Chemistry, The University of Melbourne, Parkville, Victoria, Australia
| | - Erica Giudici
- School of Chemistry, The University of Melbourne, Parkville, Victoria, Australia
| | - Lars Goerigk
- School of Chemistry, The University of Melbourne, Parkville, Victoria, Australia
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28
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Hait D, Lahana D, Fajen OJ, Paz ASP, Unzueta PA, Rana B, Lu L, Wang Y, Kjønstad EF, Koch H, Martínez TJ. Prediction of photodynamics of 200 nm excited cyclobutanone with linear response electronic structure and ab initio multiple spawning. J Chem Phys 2024; 160:244101. [PMID: 38912674 DOI: 10.1063/5.0203800] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2024] [Accepted: 05/05/2024] [Indexed: 06/25/2024] Open
Abstract
Simulations of photochemical reaction dynamics have been a challenge to the theoretical chemistry community for some time. In an effort to determine the predictive character of current approaches, we predict the results of an upcoming ultrafast diffraction experiment on the photodynamics of cyclobutanone after excitation to the lowest lying Rydberg state (S2). A picosecond of nonadiabatic dynamics is described with ab initio multiple spawning. We use both time dependent density functional theory (TDDFT) and equation-of-motion coupled cluster singles and doubles (EOM-CCSD) theory for the underlying electronic structure theory. We find that the lifetime of the S2 state is more than a picosecond (with both TDDFT and EOM-CCSD). The predicted ultrafast electron diffraction spectrum exhibits numerous structural features, but weak time dependence over the course of the simulations.
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Affiliation(s)
- Diptarka Hait
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, USA
- SLAC National Accelerator Laboratory, Menlo Park, California 94024, USA
| | - Dean Lahana
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, USA
- SLAC National Accelerator Laboratory, Menlo Park, California 94024, USA
| | - O Jonathan Fajen
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, USA
- SLAC National Accelerator Laboratory, Menlo Park, California 94024, USA
| | - Amiel S P Paz
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, USA
- SLAC National Accelerator Laboratory, Menlo Park, California 94024, USA
| | - Pablo A Unzueta
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, USA
- SLAC National Accelerator Laboratory, Menlo Park, California 94024, USA
| | - Bhaskar Rana
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, USA
- SLAC National Accelerator Laboratory, Menlo Park, California 94024, USA
| | - Lixin Lu
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, USA
- SLAC National Accelerator Laboratory, Menlo Park, California 94024, USA
| | - Yuanheng Wang
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, USA
- SLAC National Accelerator Laboratory, Menlo Park, California 94024, USA
| | - Eirik F Kjønstad
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, USA
- SLAC National Accelerator Laboratory, Menlo Park, California 94024, USA
- Department of Chemistry, Norwegian University of Science and Technology, Trondheim 7491, Norway
| | - Henrik Koch
- Department of Chemistry, Norwegian University of Science and Technology, Trondheim 7491, Norway
| | - Todd J Martínez
- Department of Chemistry and The PULSE Institute, Stanford University, Stanford, California 94305, USA
- SLAC National Accelerator Laboratory, Menlo Park, California 94024, USA
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29
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Grotjahn R, Furche F. Comment on: "Toward Accurate Two-Photon Absorption Spectrum Simulations: Exploring the Landscape beyond the Generalized Gradient Approximation". J Phys Chem Lett 2024; 15:6237-6240. [PMID: 38867618 DOI: 10.1021/acs.jpclett.4c00650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2024]
Abstract
A recent benchmark study of two-photon absorption (2PA) strengths using meta-generalized gradient approximation (MGGA) exchange-correlation functionals by Ahmadzadeh, Li, Rinkevicius, Norman, and Zaleśny (ALRNZ24) [ J. Phys. Chem. Lett. 2024, 15, 969] misrepresents the state of the field in this area. Not only was an assessment of 2PA strengths for the exact same benchmark published previously; ALRNZ24 also uses a gauge-variant form of MGGA response theory which produces erratic behavior for certain benchmark systems. Applications of MGGAs to optical and magnetic response properties should use a gauge-invariant extension of MGGA functionals such as paramagnetic current-dependent MGGAs.
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Affiliation(s)
- Robin Grotjahn
- Department of Chemistry, University of California, Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Filipp Furche
- Department of Chemistry, University of California, Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
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30
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Loreti A, Freixas VM, Avagliano D, Segatta F, Song H, Tretiak S, Mukamel S, Garavelli M, Govind N, Nenov A. WFOT: A Wave Function Overlap Tool between Single- and Multi-Reference Electronic Structure Methods for Spectroscopy Simulation. J Chem Theory Comput 2024; 20:4804-4819. [PMID: 38828948 DOI: 10.1021/acs.jctc.4c00310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/05/2024]
Abstract
We report the development of a novel diagnostic tool, named wave function overlap tool (WFOT), designed to evaluate the overlap between wave functions computed at single-reference [i.e., time-dependent density functional theory or configuration interaction singles (CIS)] and multireference (i.e., CASSCF/CASPT2) electronic structure levels of theory. It relies on truncating the single- and multireference WFs to CIS-like expansions spanning the same configurational space and maximizing the molecular orbital overlap by means of a unitary transformation. To demonstrate the functionality of the tool, we calculate the transient spectrum of acetylacetone by evaluating excited state absorption signals with multireference quality on top of single-reference on-the-fly dynamics simulations. Semiautomatic spectra generation is facilitated by interfacing the tool with the COBRAMM package, which also allows one to use WFOT with several quantum chemistry codes such as Gaussian, NWChem, and OpenMolcas. Other exciting possibilities for the utilization of the code beyond the simulation of transient absorption spectroscopy are eventually discussed.
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Affiliation(s)
- Alessandro Loreti
- Dipartimento di Chimica Industriale "Toso Montanari", University of Bologna, Via Piero Gobetti 85, Bologna 40129, Italy
| | - Victor Manuel Freixas
- Department of Chemistry and Department of Physics and Astronomy, University of California, Irvine, California 92697, United States
| | - Davide Avagliano
- Dipartimento di Chimica Industriale "Toso Montanari", University of Bologna, Via Piero Gobetti 85, Bologna 40129, Italy
| | - Francesco Segatta
- Dipartimento di Chimica Industriale "Toso Montanari", University of Bologna, Via Piero Gobetti 85, Bologna 40129, Italy
| | - Huajing Song
- Physics and Chemistry of Materials, Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Sergei Tretiak
- Physics and Chemistry of Materials, Theoretical Division, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
- Center for Integrated Nanotechnologies, Los Alamos National Laboratory, Los Alamos, New Mexico 87545, United States
| | - Shaul Mukamel
- Department of Chemistry and Department of Physics and Astronomy, University of California, Irvine, California 92697, United States
| | - Marco Garavelli
- Dipartimento di Chimica Industriale "Toso Montanari", University of Bologna, Via Piero Gobetti 85, Bologna 40129, Italy
| | - Niranjan Govind
- Physical and Computational Sciences Directorate, Pacific Northwest National Laboratory, Richland, Washington 99352, United States
- Department of Chemistry, University of Washington, Seattle, Washington 98195, United States
| | - Artur Nenov
- Dipartimento di Chimica Industriale "Toso Montanari", University of Bologna, Via Piero Gobetti 85, Bologna 40129, Italy
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31
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Wahab A, Gershoni-Poranne R. COMPAS-3: a dataset of peri-condensed polybenzenoid hydrocarbons. Phys Chem Chem Phys 2024; 26:15344-15357. [PMID: 38758092 DOI: 10.1039/d4cp01027b] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/18/2024]
Abstract
We introduce the third installment of the COMPAS Project - a COMputational database of Polycyclic Aromatic Systems, focused on peri-condensed polybenzenoid hydrocarbons. In this installment, we develop two datasets containing the optimized ground-state structures and a selection of molecular properties of ∼39k and ∼9k peri-condensed polybenzenoid hydrocarbons (at the GFN2-xTB and CAM-B3LYP-D3BJ/cc-pvdz//CAM-B3LYP-D3BJ/def2-SVP levels, respectively). The manuscript details the enumeration and data generation processes and describes the information available within the datasets. An in-depth comparison between the two types of computation is performed, and it is found that the geometrical disagreement is maximal for slightly-distorted molecules. In addition, a data-driven analysis of the structure-property trends of peri-condensed PBHs is performed, highlighting the effect of the size of peri-condensed islands and linearly annulated rings on the HOMO-LUMO gap. The insights described herein are important for rational design of novel functional aromatic molecules for use in, e.g., organic electronics. The generated datasets provide a basis for additional data-driven machine- and deep-learning studies in chemistry.
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Affiliation(s)
- Alexandra Wahab
- The Laboratory for Organic Chemistry, Department of Chemistry and Applied Biosciences, ETH Zurich, 8093 Zurich, Switzerland
| | - Renana Gershoni-Poranne
- The Schulich Faculty of Chemistry and the Resnick Sustainability Center for Catalysis, Technion - Israel Institute of Technology, Haifa 32000, Israel.
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32
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Femina C, Sajith PK, Remya K, Thomas R, Solomon RV. Theoretical Insights into the Structural and Optical Properties of D-π-A-based Cyanostilbene Systems of α and β Variants. ACS OMEGA 2024; 9:22764-22776. [PMID: 38826558 PMCID: PMC11137715 DOI: 10.1021/acsomega.4c00850] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/25/2024] [Revised: 04/21/2024] [Accepted: 04/23/2024] [Indexed: 06/04/2024]
Abstract
The π-conjugated organic molecules containing cyanostilbene motifs have been extensively investigated due to their great potential applications in several optoelectronic and biological fields. Developing efficient molecules in this respect requires strategic structural engineering and a deep understanding of the structure-property relationship at the molecular level. In this context, understanding the impact of positional isomerism in cyanostilbene systems is a fundamental aspect of designing desired materials with improved photophysical properties. Herein, we designed ten donor-π-acceptor (D-π-A) type cyanostilbene derivatives (P1 - P10) with different π linkers and compared their structural and optoelectronic properties arising from the positional variations of the -CN group (α and β- variations) through the utilization of density functional theory (DFT) and time-dependent DFT (TDDFT) methods. The topological analyses of the electron density are used to explain the relatively high stability of α isomer compared to that of β. Frontier molecular orbital analysis reveals that 17 molecules tend to show a reduced highest occupied molecular orbital-lowest unoccupied molecular orbital gap, and most of them showed a greater nonlinear optical (NLO) character compared to the parent molecule. TDDFT calculations indicate that β isomers show higher absorption maxima compared to their α counterparts. Among all the scrutinized molecules, the absorption maximum extended up to 602 nm for P9 and it possesses the highest first-order hyperpolarizability. This study sheds light on positional isomers and their reactivity, absorption spectra, and NLO properties of D-π-A type architecture that can be suitably tuned by appropriating the π-bridge for practical applications.
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Affiliation(s)
- Cherumannil Femina
- Department
of Chemistry, Farook College (Autonomous),
(Affiliated to the University of Calicut), Kozhikode 673632, Kerala, India
| | - Pookkottu K. Sajith
- Department
of Chemistry, Farook College (Autonomous),
(Affiliated to the University of Calicut), Kozhikode 673632, Kerala, India
| | - Karunakaran Remya
- Government
Women’s Polytechnic College, Kozhikode 673009, Kerala, India
| | - Reji Thomas
- Department
of Chemistry, Farook College (Autonomous),
(Affiliated to the University of Calicut), Kozhikode 673632, Kerala, India
| | - Rajadurai Vijay Solomon
- Department
of Chemistry, Madras Christian College (Autonomous),
(Affiliated to the University of Madras), Chennai 600059, Tamil Nadu, India
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33
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Farcaş AA, Bende A. Theoretical insights into dopamine photochemistry adsorbed on graphene-type nanostructures. Phys Chem Chem Phys 2024; 26:14937-14947. [PMID: 38738904 DOI: 10.1039/d4cp00432a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/14/2024]
Abstract
The equilibrium geometry structures and light absorption properties of the dopamine (DA) and dopamine-o-quinone (DAQ) adsorbed on the graphene surface have been investigated using the ground state and linear-response time-dependent density functional theories. Two types of graphene systems were considered, a rectangular form of hexagonal lattice with optimized C-C bond length as the model system for graphene nanoparticles (GrNP) and a similar system but with fixed C-C bond length (1.42 Å) as the model system for graphene 2D sheet (GrS). The analysis of the vertical excitations showed that three types of electronic transitions are possible, namely, localized on graphene, localized on the DA or DAQ, and charge transfer (CT). In the case of the graphene-DA complex, the charge transfer excitations were characterized by the molecule-to-surface (MSCT) character, whereas the graphene-DAQ was characterized by the reverse, i.e. surface-to-molecule (SMCT). The difference between the two cases is given by the presence of an energetically low-lying unoccupied orbital (LUMO+1) that allows charge transfer from the surface to the molecule in the case of DAQ. However, it was also shown that the fingerprints of excited electronic states associated with the adsorbed molecules cannot be seen in the spectrum, as they are mostly suppressed by the characteristic spectral shape of graphene.
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Affiliation(s)
- Alex-Adrian Farcaş
- National Institute for Research and Development of Isotopic and Molecular Technologies, Donat Street, No. 67-103, Ro-400293 Cluj-Napoca, Romania.
| | - Attila Bende
- National Institute for Research and Development of Isotopic and Molecular Technologies, Donat Street, No. 67-103, Ro-400293 Cluj-Napoca, Romania.
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34
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Selenius E, Sigurdarson AE, Schmerwitz YLA, Levi G. Orbital-Optimized Versus Time-Dependent Density Functional Calculations of Intramolecular Charge Transfer Excited States. J Chem Theory Comput 2024; 20:3809-3822. [PMID: 38695313 DOI: 10.1021/acs.jctc.3c01319] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/15/2024]
Abstract
The performance of time-independent, orbital-optimized calculations of excited states is assessed with respect to charge transfer excitations in organic molecules in comparison to the linear-response time-dependent density functional theory (TD-DFT) approach. A direct optimization method to converge on saddle points of the electronic energy surface is used to carry out calculations with the local density approximation (LDA) and the generalized gradient approximation (GGA) functionals PBE and BLYP for a set of 27 excitations in 15 molecules. The time-independent approach is fully variational and provides a relaxed excited state electron density from which the extent of charge transfer is quantified. The TD-DFT calculations are generally found to provide larger charge transfer distances compared to the orbital-optimized calculations, even when including orbital relaxation effects with the Z-vector method. While the error on the excitation energy relative to theoretical best estimates is found to increase with the extent of charge transfer up to ca. -2 eV for TD-DFT, no correlation is observed for the orbital-optimized approach. The orbital-optimized calculations with the LDA and the GGA functionals provide a mean absolute error of ∼0.7 eV, outperforming TD-DFT with both local and global hybrid functionals for excitations with a long-range charge transfer character. Orbital-optimized calculations with the global hybrid functional B3LYP and the range-separated hybrid functional CAM-B3LYP on a selection of states with short- and long-range charge transfer indicate that inclusion of exact exchange has a small effect on the charge transfer distance, while it significantly improves the excitation energy, with the best-performing functional CAM-B3LYP providing an absolute error typically around 0.15 eV.
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Affiliation(s)
- Elli Selenius
- Science Institute of the University of Iceland, Reykjavík 107, Iceland
| | | | | | - Gianluca Levi
- Science Institute of the University of Iceland, Reykjavík 107, Iceland
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35
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Stelmach KB, Dukes CA, Garrod RT. Search for Chirality in Hydrogenated Magnesium Nanosilicates: A DFT and TD-DFT Investigation. J Phys Chem A 2024; 128:3475-3494. [PMID: 38687691 PMCID: PMC11089509 DOI: 10.1021/acs.jpca.3c06521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/10/2023] [Revised: 03/18/2024] [Accepted: 03/21/2024] [Indexed: 05/02/2024]
Abstract
The formation of silicate grains in the interstellar medium (ISM), especially those containing chiral surfaces such as clinopyroxenes, is poorly understood. Moreover, silicate interactions with various forms of hydrogen-proton (H+), neutral H (HI), and molecular hydrogen (H2) are of high importance as hydrogen comprises >90% of the ISM gas budget, and these species play important roles in the formation of new molecules in space. Furthermore, silicate surfaces catalyze the formation of H2 in the interstellar medium formed on dust grain surfaces by H-H association. The technical difficulty of in situ laboratory investigations of nanosilicate nucleation using astrophysically relevant environmental conditions makes computational chemistry a useful tool for studying potential nanosilicate structures. Furthermore, chiral surfaces interacting with chiral organic molecules could serve as templates that lead to the enantiomeric excess of l-amino acids and d-polyols detected in carbonaceous meteorites. However, in order for this effect to take place, an excess of one chiral form of a mineral is required to break the symmetry. This symmetry-breaking event could have been due to the asymmetric absorption of circularly polarized light by the nanosilicate as it traverses star-forming regions. We investigate this possibility using a metastable chiral form of an enstatite dimer as an input for density functional theory (DFT) and time-dependent (TD)-DFT calculations to obtain various properties and circular dichroism spectra. All in all, twenty-six magnesium nanosilicate structures were studied using varying degrees of hydrogenation: none, with HI, with H+, and with H2. The HSE06/aug-cc-pVQZ level of theory was used for the DFT calculations. TD-DFT calculations utilized the CAM-B3LYP/cc-pVQZ and ωB97X-D3/cc-pVQZ functional and basic set pairings. Results show that (1) all twenty-six structures have absorption bands that fall within the 0.6-28.3 μm range available with the newly launched James Webb Space Telescope and (2) there is a small enantioselective effect by UV-CPL on the eight chiral enstatite dimers (predicted g-values of up to 0.007). While the observed effect is small, it opens up the possibility that it is the inorganic material that becomes enantiomerically biased by UV-CPL, driving chiral enhancements in meteoric organic molecules.
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Affiliation(s)
- Kamil B. Stelmach
- Department
of Chemistry, University of Virginia, Charlottesville, Virginia 20904, United States
- Laboratory
for Astrophysics and Surface Physics, Department of Materials Science
and Engineering, University of Virginia, Charlottesville, Virginia 22904, United States
| | - Catherine A. Dukes
- Laboratory
for Astrophysics and Surface Physics, Department of Materials Science
and Engineering, University of Virginia, Charlottesville, Virginia 22904, United States
| | - Robin T. Garrod
- Department
of Chemistry, University of Virginia, Charlottesville, Virginia 20904, United States
- Department
of Astronomy, University of Virginia, Charlottesville, Virginia 22904, United States
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36
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Sitkiewicz SP, Ferradás RR, Ramos-Cordoba E, Zaleśny R, Matito E, Luis JM. Spurious Oscillations Caused by Density Functional Approximations: Who is to Blame? Exchange or Correlation? J Chem Theory Comput 2024; 20:3144-3153. [PMID: 38570186 PMCID: PMC11044272 DOI: 10.1021/acs.jctc.3c01339] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2023] [Revised: 03/18/2024] [Accepted: 03/19/2024] [Indexed: 04/05/2024]
Abstract
We analyze the varying susceptibilities of different density functional approximations (DFAs) to present spurious oscillations on the profiles of several vibrational properties. Among other problems, these spurious oscillations cause significant errors in harmonic and anharmonic IR and Raman frequencies and intensities. This work hinges on a judicious strategy to dissect the exchange and correlation components of DFAs and pinpoint the origins of these oscillations. We identify spurious oscillations in derivatives of all energy components with respect to nuclear displacements, including those energy terms that do not involve numerical integrations. These indirect spurious oscillations are attributed to suboptimal electron densities resulting from a self-consistent field procedure using a DFA that exhibits direct spurious oscillations. Direct oscillations stem from inaccurate numerical integration of the exchange and correlation energy density functionals. A thorough analysis of direct spurious oscillations reveals that only a handful of exchange and correlation components are insensitive to spurious oscillations, giving rise to three families of functionals, BH&H, LSDA, and BLYP. Among the functionals in these families, we encounter four widespread DFAs: BLYP, B3LYP, LC-BLYP, and CAM-B3LYP. Certain DFAs like PBE appear less sensitive to spurious oscillations due to compensatory cancellations between their energy components. Additionally, we found non-negligible but small oscillations in PBE and TPSS, which could be safely employed provided a sufficiently large integration grid is used in the calculations. These findings hint at the key components of current approximations to be improved and emphasize the necessity to develop accurate DFAs suitable for studying molecular spectroscopies.
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Affiliation(s)
- Sebastian P. Sitkiewicz
- Donostia
International Physics Center (DIPC), Donostia 20018, Euskadi, Spain
- Wrocław
Centre for Networking and Supercomputing, Wrocław University of Science and Technology, Wyb. Wyspiańskiego 27, Wrocław PL-50370, Poland
| | - Rubén R. Ferradás
- Donostia
International Physics Center (DIPC), Donostia 20018, Euskadi, Spain
| | - Eloy Ramos-Cordoba
- Donostia
International Physics Center (DIPC), Donostia 20018, Euskadi, Spain
- Polimero
eta Material Aurreratuak: Fisika, Kimika eta Teknologia, Kimika Fakultatea,
Euskal Herriko Unibertsitatea UPV/EHU, P.K. 1072, Donostia 20080, Euskadi, Spain
- Ikerbasque
Foundation for Science, Plaza Euskadi 5, Bilbao 48009, Euskadi, Spain
- Institute
for Advanced Chemistry of Catalonia (IQAC), CSIC, Jordi Girona 18-26, Barcelona 08034, Spain
| | - Robert Zaleśny
- Faculty
of
Chemistry, Wrocław University of Science
and Technology, Wyb.
Wyspiańskiego 27, Wrocław PL-50370, Poland
| | - Eduard Matito
- Donostia
International Physics Center (DIPC), Donostia 20018, Euskadi, Spain
- Ikerbasque
Foundation for Science, Plaza Euskadi 5, Bilbao 48009, Euskadi, Spain
| | - Josep M. Luis
- Institut
de Química Computacional i Catàlisi (IQCC) and Departament
de Química, Universitat de Girona, Girona 17003, Catalonia, Spain
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37
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Hung TC, Godinez-Loyola Y, Steinbrecher M, Kiraly B, Khajetoorians AA, Doltsinis NL, Strassert CA, Wegner D. Activating the Fluorescence of a Ni(II) Complex by Energy Transfer. J Am Chem Soc 2024; 146:8858-8864. [PMID: 38513215 PMCID: PMC10996004 DOI: 10.1021/jacs.3c07716] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2023] [Revised: 03/07/2024] [Accepted: 03/07/2024] [Indexed: 03/23/2024]
Abstract
Luminescence of open-shell 3d metal complexes is often quenched due to ultrafast intersystem crossing (ISC) and cooling into a dark metal-centered excited state. We demonstrate successful activation of fluorescence from individual nickel phthalocyanine (NiPc) molecules in the junction of a scanning tunneling microscope (STM) by resonant energy transfer from other metal phthalocyanines at low temperature. By combining STM, scanning tunneling spectroscopy, STM-induced luminescence, and photoluminescence experiments as well as time-dependent density functional theory, we provide evidence that there is an activation barrier for the ISC, which, in most experimental conditions, is overcome. We show that this is also the case in an electroluminescent tunnel junction where individual NiPc molecules adsorbed on an ultrathin NaCl decoupling film on a Ag(111) substrate are probed. However, when an MPc (M = Zn, Pd, Pt) molecule is placed close to NiPc by means of STM atomic manipulation, resonant energy transfer can excite NiPc without overcoming the ISC activation barrier, leading to Q-band fluorescence. This work demonstrates that the thermally activated population of dark metal-centered states can be avoided by a designed local environment at low temperatures paired with directed molecular excitation into vibrationally cold electronic states. Thus, we can envisage the use of luminophores based on more abundant transition metal complexes that do not rely on Pt or Ir by restricting vibration-induced ISC.
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Affiliation(s)
- Tzu-Chao Hung
- Institute
for Molecules and Materials, Radboud University, 6500 GL Nijmegen, The Netherlands
- Institute
for Experimental and Applied Physics, University of Regensburg, 93040 Regensburg, Germany
| | - Yokari Godinez-Loyola
- Institut
für Anorganische und Analytische Chemie, University of Münster, 48149 Münster, Germany
- Center
for Nanotechnology (CeNTech), University
of Münster, 48149 Münster, Germany
| | - Manuel Steinbrecher
- Institute
for Molecules and Materials, Radboud University, 6500 GL Nijmegen, The Netherlands
| | - Brian Kiraly
- Institute
for Molecules and Materials, Radboud University, 6500 GL Nijmegen, The Netherlands
| | | | - Nikos L. Doltsinis
- Institut
für Festkörpertheorie and Center for Multiscale Theory
and Computation, University of Münster, 48149 Münster, Germany
| | - Cristian A. Strassert
- Institut
für Anorganische und Analytische Chemie, University of Münster, 48149 Münster, Germany
- Center
for Nanotechnology (CeNTech), University
of Münster, 48149 Münster, Germany
- Cells in
Motion Interfaculty Centre (CiMIC) and Center for Soft Nanoscience
(SoN), University of Münster, 48149 Münster, Germany
| | - Daniel Wegner
- Institute
for Molecules and Materials, Radboud University, 6500 GL Nijmegen, The Netherlands
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38
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Patra A, Pipim GB, Krylov AI, Mallikarjun Sharada S. Performance of Density Functionals for Excited-State Properties of Isolated Chromophores and Exciplexes: Emission Spectra, Solvatochromic Shifts, and Charge-Transfer Character. J Chem Theory Comput 2024; 20:2520-2537. [PMID: 38488640 DOI: 10.1021/acs.jctc.4c00005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/27/2024]
Abstract
This study assesses the performance of various meta-generalized gradient approximation (meta-GGA), global hybrid, and range-separated hybrid (RSH) density functionals in capturing the excited-state properties of organic chromophores and their excited-state complexes (exciplexes). Motivated by their uses in solar energy harvesting and photoredox CO2 reduction, we use oligo-(p-phenylenes) and their excited-state complexes with triethylamine as model systems. We focus on the fluorescence properties of these systems, specifically emission energies. We also consider solvatochromic shifts and wave function characteristics. The latter is described by using reduced quantities such as natural transition orbitals (NTOs) and exciton descriptors. The functionals are benchmarked against the experimental fluorescence spectra and the equation-of-motion coupled-cluster method with single and double excitations. Both in isolated chromophores and in exciplexes, meta-GGA functionals drastically underestimate the emission energies and exhibit significant exciton delocalization and anticorrelation between electron and hole motion. The performance of global hybrid functionals is strongly dependent on the percentage of exact exchange. Our study identifies RSH GGAs as the best-performing functionals, with ωPBE demonstrating the best agreement with experimental results. RSH meta-GGAs often overestimate emission energies in exciplexes and yield larger hole NTOs. Their performance can be improved by optimally tuning the range-separation parameter.
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Affiliation(s)
- Abhilash Patra
- Mork Family Department of Chemical Engineering and Materials Science, University of Southern California, Los Angeles, California 90089, United States
| | - George Baffour Pipim
- Department of Chemistry, University of Southern California, Los Angeles ,California 90089, United States
| | - Anna I Krylov
- Department of Chemistry, University of Southern California, Los Angeles ,California 90089, United States
| | - Shaama Mallikarjun Sharada
- Mork Family Department of Chemical Engineering and Materials Science, University of Southern California, Los Angeles, California 90089, United States
- Department of Chemistry, University of Southern California, Los Angeles ,California 90089, United States
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39
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Avagliano D, Skreta M, Arellano-Rubach S, Aspuru-Guzik A. DELFI: a computer oracle for recommending density functionals for excited states calculations. Chem Sci 2024; 15:4489-4503. [PMID: 38516092 PMCID: PMC10952086 DOI: 10.1039/d3sc06440a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2023] [Accepted: 02/05/2024] [Indexed: 03/23/2024] Open
Abstract
Density functional theory (DFT) is the workhorse of computational quantum chemistry. One of its main limitations is that choosing the right functional is a non-trivial task left for human experts. The choice is particularly hard for excited state calculations when using its time-dependent formulation (TD-DFT). This is due to the approximations of the method, but also because the photophysical properties of a molecule are defined by a manifold of states that all need to be properly described. This includes not only the relative energy of the states, but also capturing the correct character, order, and intensity of the transitions. In this work, we developed a neural network to recommend functionals to be used on molecules for TD-DFT calculations, by simultaneously considering all these properties for a manifold of states. This was possible by developing a scoring system to define the accuracy of an excited state's calculation against a higher-accuracy reference. The scoring system is generalizable to any level of theory; we here applied it to evaluate the performance of common functionals of different rungs against a higher accuracy method on a large set of organic molecules. The results are collected in a database that we released and made open, providing four million data points to the community for future applications. The scoring system assigns a value between zero and one hundred to each functional for each molecule, transforming the complicated task of learning photophysical properties into a simpler regression task. We used the dataset to train a graph attention neural network to predict the scores for unseen molecules. We call this oracle DELFI (Data-driven EvaLuation of Functionals by Inference), which can be used to quickly screen and predict the ranking of functionals to calculate the optical properties of organic molecules. We validated DELFI in two in silico experiments: choosing a common functional for a series of spiropyran-merocyanine isomers and a unique functional to screen a large dataset of over 50 000 organic photovoltaic molecules, for which an extensive benchmark would be unfeasible. A corresponding web application allows DELFI to be easily run and the results to be analyzed, alleviating the hurdle of choosing the right functional for TD-DFT calculations.
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Affiliation(s)
- Davide Avagliano
- Department of Chemistry, University of Toronto 80 St. George Street Toronto ON M5S 3H6 Canada
- Department of Computer Science, University of Toronto 40 St. George Street Toronto ON M5S 2E4 Canada
| | - Marta Skreta
- Department of Computer Science, University of Toronto 40 St. George Street Toronto ON M5S 2E4 Canada
- Vector Institute for Artificial Intelligence 661 University Ave. Suite 710 ON M5G 1M1 Toronto Canada
| | | | - Alán Aspuru-Guzik
- Department of Chemistry, University of Toronto 80 St. George Street Toronto ON M5S 3H6 Canada
- Department of Computer Science, University of Toronto 40 St. George Street Toronto ON M5S 2E4 Canada
- Vector Institute for Artificial Intelligence 661 University Ave. Suite 710 ON M5G 1M1 Toronto Canada
- Department of Materials Science & Engineering, University of Toronto 184 College St Toronto M5S 3E4 Canada
- Department of Chemical Engineering & Applied Chemistry, University of Toronto 200 College St ON M5S 3E5 Toronto Canada
- Lebovic Fellow, Canadian Institute for Advanced Research (CIFAR) 66118 University Ave. M5G 1M1 Toronto Canada
- Acceleration Consortium 80 St George St M5S 3H6 Toronto Canada
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40
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Li J, Liang J, Wang Z, Ptaszek AL, Liu X, Ganoe B, Head-Gordon M, Head-Gordon T. Highly Accurate Prediction of NMR Chemical Shifts from Low-Level Quantum Mechanics Calculations Using Machine Learning. J Chem Theory Comput 2024; 20:2152-2166. [PMID: 38331423 DOI: 10.1021/acs.jctc.3c01256] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/10/2024]
Abstract
Theoretical predictions of NMR chemical shifts from first-principles can greatly facilitate experimental interpretation and structure identification of molecules in gas, solution, and solid-state phases. However, accurate prediction of chemical shifts using the gold-standard coupled cluster with singles, doubles, and perturbative triple excitations [CCSD(T)] method with a complete basis set (CBS) can be prohibitively expensive. By contrast, machine learning (ML) methods offer inexpensive alternatives for chemical shift predictions but are hampered by generalization to molecules outside the original training set. Here, we propose several new ideas in ML of the chemical shift prediction for H, C, N, and O that first introduce a novel feature representation, based on the atomic chemical shielding tensors within a molecular environment using an inexpensive quantum mechanics (QM) method, and train it to predict NMR chemical shieldings of a high-level composite theory that approaches the accuracy of CCSD(T)/CBS. In addition, we train the ML model through a new progressive active learning workflow that reduces the total number of expensive high-level composite calculations required while allowing the model to continuously improve on unseen data. Furthermore, the algorithm provides an error estimation, signaling potential unreliability in predictions if the error is large. Finally, we introduce a novel approach to keep the rotational invariance of the features using tensor environment vectors (TEVs) that yields a ML model with the highest accuracy compared to a similar model using data augmentation. We illustrate the predictive capacity of the resulting inexpensive shift machine learning (iShiftML) models across several benchmarks, including unseen molecules in the NS372 data set, gas-phase experimental chemical shifts for small organic molecules, and much larger and more complex natural products in which we can accurately differentiate between subtle diastereomers based on chemical shift assignments.
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Affiliation(s)
- Jie Li
- Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Jiashu Liang
- Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Zhe Wang
- Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Aleksandra L Ptaszek
- Christian Doppler Laboratory for High-Content Structural Biology and Biotechnology, Department of Structural and Computational Biology, Max Perutz Laboratories, University of Vienna, Campus Vienna Biocenter 5, Vienna 1030, Austria
- Laboratory for Computer-Aided Molecular Design, Division of Medicinal Chemistry, Otto Loewi Research Center, Medical University Graz, Neue Stiftingtalstrasse 6/III, Graz 8010, Austria
| | - Xiao Liu
- Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Brad Ganoe
- Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
| | - Martin Head-Gordon
- Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
| | - Teresa Head-Gordon
- Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
- Departments of Bioengineering and Chemical and Biomolecular Engineering, University of California, Berkeley, Berkeley, California 94720, United States
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41
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Zavatski S, Neilande E, Bandarenka H, Popov A, Piskunov S, Bocharov D. Density functional theory for doped TiO 2: current research strategies and advancements. NANOTECHNOLOGY 2024; 35:192001. [PMID: 38324910 DOI: 10.1088/1361-6528/ad272e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2023] [Accepted: 02/07/2024] [Indexed: 02/09/2024]
Abstract
Since the inception of the density functional theory (DFT) by Hohenberg and Kohn in 1964, it rapidly became an indispensable theoretical tool across various disciplines, such as chemistry, biology, and materials science, among others. This theory has ushered in a new era of computational research, paving the way for substantial advancements in fundamental understanding. Today, DFT is routinely employed for a diverse range of applications, such as probing new material properties and providing a profound understanding of the mechanisms underlying physical, chemical, and biological processes. Even after decades of active utilization, the improvement of DFT principles has never been slowed down, meaning that more accurate theoretical results are continuously generated with time. This work highlights the latest achievements acquired by DFT in the specific research field, namely the theoretical investigations of doped TiO2systems, which have not been comprehensively reviewed and summarized yet. Successful progress in this niche is currently hard to imagine without the support by DFT. It can accurately reveal new TiO2properties after introducing the desired dopant and help to find the optimal system design for a specific application prior to proceeding to more time-consuming and expensive experimental research. Hence, by evaluating a selection of the most recent research studies, we aim to highlight the pertinent aspects of DFT as they relate to the study of doped TiO2systems. We also aim to shed light on the strengths and weaknesses of DFT and present the primary strategies employed thus far to predict the properties of various doped TiO2systems reliably.
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Affiliation(s)
- Siarhei Zavatski
- Applied Plasmonics Laboratory, Belarusian State University of Informatics and Radioelectronics, Minsk, Belarus
| | - Elina Neilande
- Institute of Solid State Physics, University of Latvia, Riga, Latvia
| | - Hanna Bandarenka
- Applied Plasmonics Laboratory, Belarusian State University of Informatics and Radioelectronics, Minsk, Belarus
| | - Anatoli Popov
- Institute of Solid State Physics, University of Latvia, Riga, Latvia
| | - Sergei Piskunov
- Institute of Solid State Physics, University of Latvia, Riga, Latvia
| | - Dmitry Bocharov
- Institute of Solid State Physics, University of Latvia, Riga, Latvia
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42
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Herbert JM. Visualizing and characterizing excited states from time-dependent density functional theory. Phys Chem Chem Phys 2024; 26:3755-3794. [PMID: 38226636 DOI: 10.1039/d3cp04226j] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2024]
Abstract
Time-dependent density functional theory (TD-DFT) is the most widely-used electronic structure method for excited states, due to a favorable combination of low cost and semi-quantitative accuracy in many contexts, even if there are well recognized limitations. This Perspective describes various ways in which excited states from TD-DFT calculations can be visualized and analyzed, both qualitatively and quantitatively. This includes not just orbitals and densities but also well-defined statistical measures of electron-hole separation and of Frenkel-type exciton delocalization. Emphasis is placed on mathematical connections between methods that have often been discussed separately. Particular attention is paid to charge-transfer diagnostics, which provide indicators of when TD-DFT may not be trustworthy due to its categorical failure to describe long-range electron transfer. Measures of exciton size and charge separation that are directly connected to the underlying transition density are recommended over more ad hoc metrics for quantifying charge-transfer character.
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Affiliation(s)
- John M Herbert
- Department of Chemistry & Biochemistry, The Ohio State University, Columbus, Ohio 43210, USA.
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43
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Blaskovits JT, Laplaza R, Vela S, Corminboeuf C. Data-Driven Discovery of Organic Electronic Materials Enabled by Hybrid Top-Down/Bottom-Up Design. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2024; 36:e2305602. [PMID: 37815223 DOI: 10.1002/adma.202305602] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/11/2023] [Revised: 09/05/2023] [Indexed: 10/11/2023]
Abstract
The high-throughput exploration and screening of molecules for organic electronics involves either a 'top-down' curation and mining of existing repositories, or a 'bottom-up' assembly of user-defined fragments based on known synthetic templates. Both are time-consuming approaches requiring significant resources to compute electronic properties accurately. Here, 'top-down' is combined with 'bottom-up' through automatic assembly and statistical models, thus providing a platform for the fragment-based discovery of organic electronic materials. This study generates a top-down set of 117K synthesized molecules containing structures, electronic and topological properties and chemical composition, and uses them as building blocks for bottom-up design. A tool is developed to automate the coupling of these building blocks at their C(sp2/sp)-H bonds, providing a fundamental link between the two dataset construction philosophies. Statistical models are trained on this dataset and a subset of resulting top-down/bottom-up compounds, enabling on-the-fly prediction of ground and excited state properties with high accuracy across organic compound space. With access to ab initio-quality optical properties, this bottom-up pipeline may be applied to any materials design campaign using existing compounds as building blocks. To illustrate this, over a million molecules are screened for singlet fission. tThe leading candidates provide insight into the features promoting this multiexciton-generating process.
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Affiliation(s)
- J Terence Blaskovits
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, École Polytechnique Fedéralé de Lausanne (EPFL), Lausanne, 1015, Switzerland
| | - Ruben Laplaza
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, École Polytechnique Fedéralé de Lausanne (EPFL), Lausanne, 1015, Switzerland
- National Centre for Competence in Research "Sustainable chemical processes through catalysis (NCCR Catalysis)" École Polytechnique Fédérale de Lausanne, Lausanne, 1015, Switzerland
| | - Sergi Vela
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, École Polytechnique Fedéralé de Lausanne (EPFL), Lausanne, 1015, Switzerland
- National Centre for Computational Design and Discovery of Novel Materials (NCCR MARVEL),Ecole Polytechnique Fédérale de Lausanne, Lausanne, 1015, Switzerland
| | - Clémence Corminboeuf
- Laboratory for Computational Molecular Design, Institute of Chemical Sciences and Engineering, École Polytechnique Fedéralé de Lausanne (EPFL), Lausanne, 1015, Switzerland
- National Centre for Competence in Research "Sustainable chemical processes through catalysis (NCCR Catalysis)" École Polytechnique Fédérale de Lausanne, Lausanne, 1015, Switzerland
- National Centre for Computational Design and Discovery of Novel Materials (NCCR MARVEL),Ecole Polytechnique Fédérale de Lausanne, Lausanne, 1015, Switzerland
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44
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Schattenberg C, Wodyński A, Åström H, Sundholm D, Kaupp M, Lehtola S. Revisiting Gauge-Independent Kinetic Energy Densities in Meta-GGAs and Local Hybrid Calculations of Magnetizabilities. J Phys Chem A 2023; 127:10896-10907. [PMID: 38100678 PMCID: PMC10758120 DOI: 10.1021/acs.jpca.3c06244] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/17/2023] [Revised: 10/27/2023] [Accepted: 11/08/2023] [Indexed: 12/17/2023]
Abstract
In a recent study [J. Chem. Theory Comput. 2021, 17, 1457-1468], some of us examined the accuracy of magnetizabilities calculated with density functionals representing the local density approximation (LDA), generalized gradient approximation (GGA), meta-GGA (mGGA), as well as global hybrid (GH) and range-separated (RS) hybrid functionals by assessment against accurate reference values obtained with coupled-cluster theory with singles, doubles, and perturbative triples [CCSD(T)]. Our study was later extended to local hybrid (LH) functionals by Holzer et al. [J. Chem. Theory Comput. 2021, 17, 2928-2947]; in this work, we examine a larger selection of LH functionals, also including range-separated LH (RSLH) functionals and strong-correlation LH (scLH) functionals. Holzer et al. also studied the importance of the physically correct handling of the magnetic gauge dependence of the kinetic energy density (τ) in mGGA calculations by comparing the Maximoff-Scuseria formulation of τ used in our aforementioned study to the more physical current-density extension derived by Dobson. In this work, we also revisit this comparison with a larger selection of mGGA functionals. We find that the newly tested LH, RSLH, and scLH functionals outperform all of the functionals considered in the previous studies. The various LH functionals afford the seven lowest mean absolute errors while also showing remarkably small standard deviations and mean errors. Most strikingly, the best two functionals are scLHs that also perform remarkably well in cases with significant multiconfigurational character, such as the ozone molecule, which is traditionally excluded from statistical error evaluations due to its large errors with common density functionals.
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Affiliation(s)
- Caspar
J. Schattenberg
- Institut
für Chemie, Theoretische Chemie/Quantenchemie, Technische Universität Berlin, Sekr. C7, Straße des 17. Juni 135, D-10623 Berlin, Germany
| | - Artur Wodyński
- Institut
für Chemie, Theoretische Chemie/Quantenchemie, Technische Universität Berlin, Sekr. C7, Straße des 17. Juni 135, D-10623 Berlin, Germany
| | - Hugo Åström
- Department
of Chemistry, Faculty of Science, University
of Helsinki, P.O. Box 55
(A.I. Virtanens plats 1), University of Helsinki FI-00014, Finland
| | - Dage Sundholm
- Department
of Chemistry, Faculty of Science, University
of Helsinki, P.O. Box 55
(A.I. Virtanens plats 1), University of Helsinki FI-00014, Finland
| | - Martin Kaupp
- Institut
für Chemie, Theoretische Chemie/Quantenchemie, Technische Universität Berlin, Sekr. C7, Straße des 17. Juni 135, D-10623 Berlin, Germany
| | - Susi Lehtola
- Department
of Chemistry, Faculty of Science, University
of Helsinki, P.O. Box 55
(A.I. Virtanens plats 1), University of Helsinki FI-00014, Finland
- Molecular
Sciences Software Institute, Blacksburg, Virginia 24061, United States
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45
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Dar DB, Maitra NT. Oscillator strengths and excited-state couplings for double excitations in time-dependent density functional theory. J Chem Phys 2023; 159:211104. [PMID: 38038212 DOI: 10.1063/5.0176705] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2023] [Accepted: 11/08/2023] [Indexed: 12/02/2023] Open
Abstract
Although useful to extract excitation energies of states of double-excitation character in time-dependent density functional theory that are missing in the adiabatic approximation, the frequency-dependent kernel derived earlier [Maitra et al., J. Chem. Phys. 120, 5932 (2004)] was not designed to yield oscillator strengths. These are required to fully determine linear absorption spectra, and they also impact excited-to-excited-state couplings that appear in dynamics simulations and other quadratic response properties. Here, we derive a modified non-adiabatic kernel that yields both accurate excitation energies and oscillator strengths for these states. We demonstrate its performance on a model two-electron system, the Be atom, and on excited-state transition dipoles in the LiH molecule at stretched bond-lengths, in all cases producing significant improvements over the traditional approximations.
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Affiliation(s)
- Davood B Dar
- Department of Physics, Rutgers University, Newark, New Jersey 07102, USA
| | - Neepa T Maitra
- Department of Physics, Rutgers University, Newark, New Jersey 07102, USA
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46
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Jacquemin D, Kossoski F, Gam F, Boggio-Pasqua M, Loos PF. Reference Vertical Excitation Energies for Transition Metal Compounds. J Chem Theory Comput 2023. [PMID: 37965941 DOI: 10.1021/acs.jctc.3c01080] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2023]
Abstract
To enrich and enhance the diversity of the quest database of highly accurate excitation energies [Véril, M.; et al. Wiley Interdiscip. Rev.: Comput. Mol. Sci. 2021, 11, e1517], we report vertical transition energies in transition metal compounds. Eleven diatomic molecules with a singlet or doublet ground state containing a fourth-row transition metal (CuCl, CuF, CuH, ScF, ScH, ScO, ScS, TiN, ZnH, ZnO, and ZnS) are considered, and the corresponding excitation energies are computed using high-level coupled-cluster (CC) methods, namely, CC3, CCSDT, CC4, and CCSDTQ, as well as multiconfigurational methods such as CASPT2 and NEVPT2. In many cases, to provide more comprehensive benchmark data, we also provide full configuration interaction estimates computed with the configuration interaction using a perturbative selection made iteratively (CIPSI) method. Based on these calculations, theoretical best estimates of the transition energies are established in both the aug-cc-pVDZ and aug-cc-pVTZ basis sets. This allows us to accurately assess the performance of the CC and multiconfigurational methods for this specific set of challenging transitions. Furthermore, comparisons with experimental data and previous theoretical results are also reported.
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Affiliation(s)
- Denis Jacquemin
- Nantes Université, CNRS, CEISAM UMR 6230, F-44000 Nantes, France
- Institut Universitaire de France (IUF), F-75005 Paris, France
| | - Fábris Kossoski
- Laboratoire de Chimie et Physique Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, F-31062 Toulouse, France
| | - Franck Gam
- Nantes Université, CNRS, CEISAM UMR 6230, F-44000 Nantes, France
| | - Martial Boggio-Pasqua
- Laboratoire de Chimie et Physique Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, F-31062 Toulouse, France
| | - Pierre-François Loos
- Laboratoire de Chimie et Physique Quantiques (UMR 5626), Université de Toulouse, CNRS, UPS, F-31062 Toulouse, France
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47
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Wang Z, Liang J, Head-Gordon M. Earth Mover's Distance as a Metric to Evaluate the Extent of Charge Transfer in Excitations Using Discretized Real-Space Densities. J Chem Theory Comput 2023; 19:7704-7714. [PMID: 37922416 DOI: 10.1021/acs.jctc.3c00894] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/05/2023]
Abstract
This paper presents a novel theoretical measure, μEMD, based on the earth mover's distance (EMD), for quantifying the density shift caused by electronic excitations in molecules. As input, the EMD metric uses only the discretized ground- and excited-state electron densities in real space, rendering it compatible with almost all electronic structure methods used to calculate excited states. The EMD metric is compared against other popular theoretical metrics for describing the extent of electron-hole separation in a wide range of excited states (valence, Rydberg, charge transfer, etc.). The results showcase the EMD metric's effectiveness across all excitation types and suggest that it is useful as an additional tool to characterize electronic excitations. The study also reveals that μEMD can function as a promising diagnostic tool for predicting the failure of pure exchange-correlation functionals. Specifically, we show statistical relationships among the functional-driven errors, the exact exchange content within the functional, and the magnitude of μEMD values.
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Affiliation(s)
- Zhe Wang
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California at Berkeley, Berkeley, California 94720, United States
| | - Jiashu Liang
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California at Berkeley, Berkeley, California 94720, United States
| | - Martin Head-Gordon
- Kenneth S. Pitzer Center for Theoretical Chemistry, Department of Chemistry, University of California at Berkeley, Berkeley, California 94720, United States
- Chemical Sciences Division, Lawrence Berkeley National Laboratory, Berkeley, California 94720, United States
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48
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Grotjahn R. Learning from the 4-(dimethylamino)benzonitrile twist: Two-parameter range-separated local hybrid functional with high accuracy for triplet and charge-transfer excitations. J Chem Phys 2023; 159:174102. [PMID: 37909451 DOI: 10.1063/5.0173701] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2023] [Accepted: 10/06/2023] [Indexed: 11/03/2023] Open
Abstract
The recent ωLH22t range-separated local hybrid (RSLH) is shown to provide outstanding accuracy for the notorious benchmark problem of the two lowest excited-state potential energy curves for the amino group twist in 4-(dimethylamino)benzonitrile (DMABN). However, the design of ωLH22t as a general-purpose functional resulted in less convincing performance for triplet excitations, which is an important advantage of previous LHs. Furthermore, ωLH22t uses 8 empirical parameters to achieve broad accuracy. In this work, the RSLH ωLH23ct-sir is constructed with minimal empiricism by optimizing its local mixing function prefactor and range-separation parameter for only 8 excitation energies. ωLH23ct-sir maintains the excellent performance of ωLH22t for the DMABN twist and charge-transfer benchmarks but significantly improves the errors for triplet excitation energies (0.17 vs 0.24 eV). Additional test calculations for the AE6BH6 thermochemistry test set and large dipole moment and static polarizability test sets confirm that the focus on excitation energies in the optimization of ωLH23ct-sir has not caused any dramatic errors for ground-state properties. Although ωLH23ct-sir cannot replace ωLH22t as a general-purpose functional, it is preferable for problems requiring a universally good description of localized and charge-transfer excitations of both singlet and triplet multiplicity. Current limitations on the application of ωLH23ct-sir and other RSLHs to the study of singlet-triplet gaps of emitters for thermally activated delayed fluorescence are discussed. This work also includes the first systematic analysis of the influence of the local mixing function prefactor and the range-separation parameter in an RSLH on different types of excitations.
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Affiliation(s)
- Robin Grotjahn
- Department of Chemistry, University of California, Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, USA
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49
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Franzke Y, Holzer C, Andersen JH, Begušić T, Bruder F, Coriani S, Della Sala F, Fabiano E, Fedotov DA, Fürst S, Gillhuber S, Grotjahn R, Kaupp M, Kehry M, Krstić M, Mack F, Majumdar S, Nguyen BD, Parker SM, Pauly F, Pausch A, Perlt E, Phun GS, Rajabi A, Rappoport D, Samal B, Schrader T, Sharma M, Tapavicza E, Treß RS, Voora V, Wodyński A, Yu JM, Zerulla B, Furche F, Hättig C, Sierka M, Tew DP, Weigend F. TURBOMOLE: Today and Tomorrow. J Chem Theory Comput 2023; 19:6859-6890. [PMID: 37382508 PMCID: PMC10601488 DOI: 10.1021/acs.jctc.3c00347] [Citation(s) in RCA: 74] [Impact Index Per Article: 37.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2023] [Indexed: 06/30/2023]
Abstract
TURBOMOLE is a highly optimized software suite for large-scale quantum-chemical and materials science simulations of molecules, clusters, extended systems, and periodic solids. TURBOMOLE uses Gaussian basis sets and has been designed with robust and fast quantum-chemical applications in mind, ranging from homogeneous and heterogeneous catalysis to inorganic and organic chemistry and various types of spectroscopy, light-matter interactions, and biochemistry. This Perspective briefly surveys TURBOMOLE's functionality and highlights recent developments that have taken place between 2020 and 2023, comprising new electronic structure methods for molecules and solids, previously unavailable molecular properties, embedding, and molecular dynamics approaches. Select features under development are reviewed to illustrate the continuous growth of the program suite, including nuclear electronic orbital methods, Hartree-Fock-based adiabatic connection models, simplified time-dependent density functional theory, relativistic effects and magnetic properties, and multiscale modeling of optical properties.
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Affiliation(s)
- Yannick
J. Franzke
- Fachbereich
Chemie, Philipps-Universität Marburg, Hans-Meerwein-Str. 4, 35032 Marburg, Germany
| | - Christof Holzer
- Institute
of Theoretical Solid State Physics, Karlsruhe
Institute of Technology (KIT), Wolfgang-Gaede-Str. 1, 76131 Karlsruhe, Germany
| | - Josefine H. Andersen
- DTU
Chemistry, Department of Chemistry, Technical
University of Denmark, Kemitorvet Building 207, DK-2800 Kongens Lyngby, Denmark
| | - Tomislav Begušić
- Division
of Chemistry and Chemical Engineering, California
Institute of Technology, Pasadena, California 91125, United States
| | - Florian Bruder
- Fachbereich
Chemie, Philipps-Universität Marburg, Hans-Meerwein-Str. 4, 35032 Marburg, Germany
| | - Sonia Coriani
- DTU
Chemistry, Department of Chemistry, Technical
University of Denmark, Kemitorvet Building 207, DK-2800 Kongens Lyngby, Denmark
| | - Fabio Della Sala
- Institute
for Microelectronics and Microsystems (CNR-IMM), Via Monteroni, Campus Unisalento, 73100 Lecce, Italy
- Center for
Biomolecular Nanotechnologies @UNILE, Istituto
Italiano di Tecnologia, Via Barsanti, 73010 Arnesano, Italy
| | - Eduardo Fabiano
- Institute
for Microelectronics and Microsystems (CNR-IMM), Via Monteroni, Campus Unisalento, 73100 Lecce, Italy
- Center for
Biomolecular Nanotechnologies @UNILE, Istituto
Italiano di Tecnologia, Via Barsanti, 73010 Arnesano, Italy
| | - Daniil A. Fedotov
- DTU
Chemistry, Department of Chemistry, Technical
University of Denmark, Kemitorvet Building 207, DK-2800 Kongens Lyngby, Denmark
- Institute
of Chemistry, The Hebrew University of Jerusalem, Jerusalem 91904, Israel
| | - Susanne Fürst
- Institut
für Chemie, Theoretische Chemie/Quantenchemie, Sekr. C7, Technische Universität Berlin, Straße des 17 Juni 135, 10623, Berlin, Germany
| | - Sebastian Gillhuber
- Institute
of Inorganic Chemistry, Karlsruhe Institute
of Technology (KIT), Engesserstr. 15, 76131 Karlsruhe, Germany
| | - Robin Grotjahn
- Department
of Chemistry, University of California,
Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Martin Kaupp
- Institut
für Chemie, Theoretische Chemie/Quantenchemie, Sekr. C7, Technische Universität Berlin, Straße des 17 Juni 135, 10623, Berlin, Germany
| | - Max Kehry
- Institute
of Physical Chemistry, Karlsruhe Institute
of Technology (KIT), Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Marjan Krstić
- Institute
of Theoretical Solid State Physics, Karlsruhe
Institute of Technology (KIT), Wolfgang-Gaede-Str. 1, 76131 Karlsruhe, Germany
| | - Fabian Mack
- Institute
of Physical Chemistry, Karlsruhe Institute
of Technology (KIT), Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Sourav Majumdar
- Department
of Chemistry, University of California,
Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Brian D. Nguyen
- Department
of Chemistry, University of California,
Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Shane M. Parker
- Department
of Chemistry, Case Western Reserve University, 10900 Euclid Ave, Cleveland, Ohio 44106 United States
| | - Fabian Pauly
- Institute
of Physics, University of Augsburg, Universitätsstr. 1, 86159 Augsburg, Germany
| | - Ansgar Pausch
- Institute
of Physical Chemistry, Karlsruhe Institute
of Technology (KIT), Fritz-Haber-Weg 2, 76131 Karlsruhe, Germany
| | - Eva Perlt
- Otto-Schott-Institut
für Materialforschung, Friedrich-Schiller-Universität
Jena, Löbdergraben
32, 07743 Jena, Germany
| | - Gabriel S. Phun
- Department
of Chemistry, University of California,
Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Ahmadreza Rajabi
- Department
of Chemistry, University of California,
Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Dmitrij Rappoport
- Department
of Chemistry, University of California,
Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Bibek Samal
- Department
of Chemical Sciences, Tata Institute of
Fundamental Research, Homi Bhabha Road, Colaba, Mumbai 400005, India
| | - Tim Schrader
- Otto-Schott-Institut
für Materialforschung, Friedrich-Schiller-Universität
Jena, Löbdergraben
32, 07743 Jena, Germany
| | - Manas Sharma
- Otto-Schott-Institut
für Materialforschung, Friedrich-Schiller-Universität
Jena, Löbdergraben
32, 07743 Jena, Germany
| | - Enrico Tapavicza
- Department
of Chemistry and Biochemistry, California
State University, Long Beach, 1250 Bellflower Boulevard, Long
Beach, California 90840-9507, United States
| | - Robert S. Treß
- Lehrstuhl
für Theoretische Chemie, Ruhr-Universität
Bochum, 44801 Bochum, Germany
| | - Vamsee Voora
- Department
of Chemical Sciences, Tata Institute of
Fundamental Research, Homi Bhabha Road, Colaba, Mumbai 400005, India
| | - Artur Wodyński
- Institut
für Chemie, Theoretische Chemie/Quantenchemie, Sekr. C7, Technische Universität Berlin, Straße des 17 Juni 135, 10623, Berlin, Germany
| | - Jason M. Yu
- Department
of Chemistry, University of California,
Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Benedikt Zerulla
- Institute
of Nanotechnology, Karlsruhe Institute of
Technology (KIT), Hermann-von-Helmholtz-Platz
1, 76344 Eggenstein-Leopoldshafen Germany
| | - Filipp Furche
- Department
of Chemistry, University of California,
Irvine, 1102 Natural Sciences II, Irvine, California 92697-2025, United States
| | - Christof Hättig
- Lehrstuhl
für Theoretische Chemie, Ruhr-Universität
Bochum, 44801 Bochum, Germany
| | - Marek Sierka
- Otto-Schott-Institut
für Materialforschung, Friedrich-Schiller-Universität
Jena, Löbdergraben
32, 07743 Jena, Germany
| | - David P. Tew
- Physical
and Theoretical Chemistry Laboratory, University
of Oxford, South Parks
Road, Oxford OX1 3QZ, United Kingdom
| | - Florian Weigend
- Fachbereich
Chemie, Philipps-Universität Marburg, Hans-Meerwein-Str. 4, 35032 Marburg, Germany
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50
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Zhu H, Zhao R, Lu Y, Liu M, Zhang J, Gao J. Leveling the Mountain Range of Excited-State Benchmarking through Multistate Density Functional Theory. J Phys Chem A 2023; 127:8473-8485. [PMID: 37768927 DOI: 10.1021/acs.jpca.3c04799] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/30/2023]
Abstract
The performance of multistate density functional theory (MSDFT) with nonorthogonal state interaction (NOSI) is assessed for 100 vertical excitation energies against the theoretical best estimates extracted to the full configuration interaction accuracy on the database developed by Loos et al. in 2018 (Loos2018). Two optimization techniques, namely, block-localized excitation and target state optimization, are examined along with two ways of estimating the transition density functional (TDF) for the correlation energy of the Hamiltonian matrix density functional. The results from the two optimization methods are similar. It was found that MSDFT-NOSI using the spin-multiplet degeneracy constraint for the TDF of spin-coupling interaction, along with the M06-2X functional, yields a root-mean-square error (RMSE) of 0.22 eV, which performs noticeably better than time-dependent density functional theory (DFT) at an RMSE of 0.43 eV using the same functional and basis set on the Loos2018 database. In comparison with wave function theory, NOSI has smaller errors than CIS(D∞), LR-CC2, and ADC(3) all of which have an RMSE of 0.28 eV, but somewhat greater than STEOM-CCSD (RMSE of 0.14 eV) and LR-CCSD (RMSE of 0.11 eV) wave function methods. In comparison with Kohn-Sham (KS) DFT calculations, the multistate DFT approach has little double counting of correlation. Importantly, there is no noticeable difference in the performance of MSDFT-NOSI on the valence, Rydberg, singlet, triplet, and double-excitation states. Although the use of another hybrid functional PBE0 leads to a greater RMSE of 0.36 eV, the deviation is systematic with a linear regression slope of 0.994 against the results with M06-2X. The present benchmark reveals that density functional approximations developed for KS-DFT for the ground state with a noninteracting reference may be adopted in MSDFT calculations in which the state interaction is key.
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Affiliation(s)
- Hong Zhu
- School of Chemical Biology & Biotechnology, Peking University Shenzhen Graduate School, Shenzhen, Guangdong 518055, China
- Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen, Guangdong 518055, China
| | - Ruoqi Zhao
- Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen, Guangdong 518055, China
| | - Yangyi Lu
- Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen, Guangdong 518055, China
| | - Meiyi Liu
- Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen, Guangdong 518055, China
| | - Jun Zhang
- Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen, Guangdong 518055, China
| | - Jiali Gao
- School of Chemical Biology & Biotechnology, Peking University Shenzhen Graduate School, Shenzhen, Guangdong 518055, China
- Institute of Systems and Physical Biology, Shenzhen Bay Laboratory, Shenzhen, Guangdong 518055, China
- Department of Chemistry and Supercomputing Institute, University of Minnesota, Minneapolis, Minnesota 55455, United States
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