1
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Sahle CJ, de Clermont Gallerande E, Niskanen J, Longo A, Elbers M, Schroer MA, Sternemann C, Jahn S. Hydration in aqueous NaCl. Phys Chem Chem Phys 2022; 24:16075-16084. [PMID: 35735165 DOI: 10.1039/d2cp00162d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Atomistic details about the hydration of ions in aqueous solutions are still debated due to the disordered and statistical nature of the hydration process. However, many processes from biology, physical chemistry to materials sciences rely on the complex interplay between solute and solvent. Oxygen K-edge X-ray excitation spectra provide a sensitive probe of the local atomic and electronic surrounding of the excited sites. We used ab initio molecular dynamics simulations together with extensive spectrum calculations to relate the features found in experimental oxygen K-edge spectra of a concentration series of aqueous NaCl with the induced structural changes upon solvation of the salt and distill the spectral fingerprints of the first hydration shells around the Na+- and Cl--ions. By this combined experimental and theoretical approach, we find the strongest spectral changes to indeed result from the first hydration shells of both ions and relate the observed shift of spectral weight from the post- to the main-edge to the origin of the post-edge as a shape resonance.
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Affiliation(s)
- Christoph J Sahle
- ESRF, The European Synchrotron, 71 Avenue des Martyrs, CS40220, FR-38043 Grenoble Cedex 9, France.
| | | | - Johannes Niskanen
- Department of Physics and Astronomy, University of Turku, FI-20014 Turun Yliopisto, Finland
| | - Alessandro Longo
- ESRF, The European Synchrotron, 71 Avenue des Martyrs, CS40220, FR-38043 Grenoble Cedex 9, France.
| | - Mirko Elbers
- Fakultät Physik/DELTA, Technische Universität Dortmund, D-44221 Dortmund, Germany
| | - Martin A Schroer
- Nanoparticle Process Technology, University of Duisburg-Essen, D-47057 Duisburg, Germany
| | - Christian Sternemann
- Fakultät Physik/DELTA, Technische Universität Dortmund, D-44221 Dortmund, Germany
| | - Sandro Jahn
- Institute of Geology and Mineralogy, University of Cologne, D-50674 Köln, Germany
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2
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Georgiou R, Sahle CJ, Sokaras D, Bernard S, Bergmann U, Rueff JP, Bertrand L. X-ray Raman Scattering: A Hard X-ray Probe of Complex Organic Systems. Chem Rev 2022; 122:12977-13005. [PMID: 35737888 DOI: 10.1021/acs.chemrev.1c00953] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
This paper provides a review of the characterization of organic systems via X-ray Raman scattering (XRS) and a step-by-step guidance for its application. We present the fundamentals of XRS required to use the technique and discuss the main parameters of the experimental set-ups to optimize spectral and spatial resolution while maximizing signal-to-background ratio. We review applications that target the analysis of mixtures of organic compounds, the identification of minor spectral features, and the spatial discrimination in heterogeneous systems. We discuss the recent development of the direct tomography technique, which utilizes the XRS process as a contrast mechanism for assessing the three-dimensional spatially resolved carbon chemistry of complex organic materials. We conclude by exposing the current limitations and provide an outlook on how to overcome some of the existing challenges and advance future developments and applications of this powerful technique for complex organic systems.
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Affiliation(s)
- Rafaella Georgiou
- Université Paris-Saclay, CNRS, Ministère de la Culture, UVSQ, MNHN, IPANEMA, F-91192 Saint-Aubin, France.,Synchrotron SOLEIL, L'Orme des Merisiers, Saint Aubin BP 48, 91192, Gif-sur-Yvette, France
| | | | - Dimosthenis Sokaras
- SLAC National Accelerator Laboratory, Stanford Synchrotron Radiation Lightsource, Menlo Park, California 94025, United States
| | - Sylvain Bernard
- Muséum National d'Histoire Naturelle, Sorbonne Université, CNRS, UMR 7590, Institut de Minéralogie, Physique des Matériaux et Cosmochimie, 75005 Paris, France
| | - Uwe Bergmann
- Department of Physics, University of Wisconsin-Madison, Madison, Wisconsin 53706, United States
| | - Jean-Pascal Rueff
- Synchrotron SOLEIL, L'Orme des Merisiers, Saint Aubin BP 48, 91192, Gif-sur-Yvette, France.,Laboratoire de Chimie Physique-Matière et Rayonnement, Sorbonne Université, CNRS, 75005 Paris, France
| | - Loïc Bertrand
- Photophysique et Photochimie Supramoléculaires et Macromoléculaires, Université Paris-Saclay, ENS Paris-Saclay, CNRS, 91190 Gif-sur-Yvette, France
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3
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Theoretical studies on structure and dynamics of anatase TiO2 (101)/H2SO4/H2O interface in the early stage of titania sulfation. Struct Chem 2022. [DOI: 10.1007/s11224-022-01946-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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4
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Pruessmann T, Nagel P, Simonelli L, Batchelor D, Gordon R, Schimmelpfennig B, Trumm M, Vitova T. Opportunities and challenges of applying advanced X-ray spectroscopy to actinide and lanthanide N-donor ligand systems. JOURNAL OF SYNCHROTRON RADIATION 2022; 29:53-66. [PMID: 34985423 PMCID: PMC8733980 DOI: 10.1107/s1600577521012091] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Accepted: 11/12/2021] [Indexed: 06/14/2023]
Abstract
N-donor ligands such as n-Pr-BTP [2,6-bis(5,6-dipropyl-1,2,4-triazin-3-yl)pyridine] preferentially bind trivalent actinides (An3+) over trivalent lanthanides (Ln3+) in liquid-liquid separation. However, the chemical and physical processes responsible for this selectivity are not yet well understood. Here, an explorative comparative X-ray spectroscopy and computational (L3-edge) study for the An/Ln L3-edge and the N K-edge of [An/Ln(n-Pr-BTP)3](NO3)3, [Ln(n-Pr-BTP)3](CF3SO3)3 and [Ln(n-Pr-BTP)3](ClO4)3 complexes is presented. High-resolution X-ray absorption near-edge structure (HR-XANES) L3-edge data reveal additional features in the pre- and post-edge range of the spectra that are investigated using the quantum chemical codes FEFF and FDMNES. X-ray Raman spectroscopy studies demonstrate the applicability of this novel technique for investigations of liquid samples of partitioning systems at the N K-edge.
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Affiliation(s)
- Tim Pruessmann
- Institute for Nuclear Waste Disposal, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Peter Nagel
- Institute for Quantum Materials and Technologies, Karlsruhe Institute of Technology, 76021 Karlsruhe, Germany
| | - Laura Simonelli
- ALBA Synchrotron Light Facility, Cerdanyola del Vallès 08290, Spain
| | - David Batchelor
- Institute for Photon Science and Synchrotron Radiation, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Robert Gordon
- PNCSRF, APS Sector 20, Argonne, IL 60439, USA
- Moyie Institute, Burnaby, BC, Canada
| | - Bernd Schimmelpfennig
- Institute for Nuclear Waste Disposal, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Michael Trumm
- Institute for Nuclear Waste Disposal, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
| | - Tonya Vitova
- Institute for Nuclear Waste Disposal, Karlsruhe Institute of Technology, Hermann-von-Helmholtz-Platz 1, 76344 Eggenstein-Leopoldshafen, Germany
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5
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Suryana S, Mutakin M, Rosandi Y, Hasanah AN. Rational design of salmeterol xinafoate imprinted polymer through computational method: Functional monomer and crosslinker selection. POLYM ADVAN TECHNOL 2021. [DOI: 10.1002/pat.5507] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Affiliation(s)
- Shendi Suryana
- Department of Pharmaceutical Analysis and Medicinal Chemistry Faculty of Pharmacy, Universitas Padjadjaran Sumedang Indonesia
- Department of Pharmacy, Faculty of Mathematics and Natural Sciences Universitas Garut Garut Indonesia
| | - Mutakin Mutakin
- Department of Pharmaceutical Analysis and Medicinal Chemistry Faculty of Pharmacy, Universitas Padjadjaran Sumedang Indonesia
| | - Yudi Rosandi
- Geophysic Department, Faculty of Mathematics and Natural Sciences Universitas Padjadjaran Sumedang Indonesia
| | - Aliya Nur Hasanah
- Department of Pharmaceutical Analysis and Medicinal Chemistry Faculty of Pharmacy, Universitas Padjadjaran Sumedang Indonesia
- Drug Development Study Center Faculty of Pharmacy, Universitas Padjadjaran Sumedang Indonesia
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6
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Bazak JD, Wong AR, Duanmu K, Han KS, Reed D, Murugesan V. Concentration-Dependent Solvation Structure and Dynamics of Aqueous Sulfuric Acid Using Multinuclear NMR and DFT. J Phys Chem B 2021; 125:5089-5099. [PMID: 33970627 DOI: 10.1021/acs.jpcb.1c01177] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/02/2023]
Abstract
Sulfuric acid is a ubiquitous compound for industrial processes, and aqueous sulfate solutions also play a critical role as electrolytes for many prominent battery chemistries. While the thermodynamic literature on it is quite well-developed, comprehensive studies of the solvation structure, particularly molecular-scale dynamical and transport properties, are less available. This study applies a multinuclear nuclear magnetic resonance (NMR) approach to the elucidation of the solvation structure and dynamics over wide temperature (-10 to 50 °C) and concentration (0-18 M) ranges, combining the 17O shift, line width, and T1 relaxation measurements, 33S shift and line width measurements, and 1H pulsed-field gradient NMR measurements of proton self-diffusivity. In conjunction, these results indicate a crossover between two regimes of solvation structure and dynamics, occurring above the concentration associated with the deep eutectic point (∼4.5 M), with the high-concentration regime dominated by a strong water-sulfate correlation. This description was borne out in detail by the activation energy trends with increasing concentration derived from the relaxation of both the H2O/H3O+ and H2SO4/HSO4-/SO42- 17O resonances and the 1H self-diffusivity. However, the 17O chemical shift difference between the H2O/H3O+ and H2SO4/HSO4-/SO42- resonances across the entire temperature range is nevertheless strikingly linear. A computational approach coupling molecular dynamics simulations and density functional theory NMR shift calculations to reproduce this trend is presented, which will be the subject of further development. This combination of multinuclear, dynamical NMR, and computational methods, and the results furnished by this study, will provide a platform for future studies on battery electrolytes where aqueous sulfate chemistry plays a central role in the solution structure.
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Affiliation(s)
- J David Bazak
- Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Allison R Wong
- Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Kaining Duanmu
- Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - Kee Sung Han
- Pacific Northwest National Laboratory, Richland, Washington 99354, United States
| | - David Reed
- Pacific Northwest National Laboratory, Richland, Washington 99354, United States
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7
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Falling LJ, Mom RV, Sandoval Diaz LE, Nakhaie S, Stotz E, Ivanov D, Hävecker M, Lunkenbein T, Knop-Gericke A, Schlögl R, Velasco-Vélez JJ. Graphene-Capped Liquid Thin Films for Electrochemical Operando X-ray Spectroscopy and Scanning Electron Microscopy. ACS APPLIED MATERIALS & INTERFACES 2020; 12:37680-37692. [PMID: 32702231 PMCID: PMC7458360 DOI: 10.1021/acsami.0c08379] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/07/2020] [Accepted: 07/23/2020] [Indexed: 06/09/2023]
Abstract
Electrochemistry is a promising building block for the global transition to a sustainable energy market. Particularly the electroreduction of CO2 and the electrolysis of water might be strategic elements for chemical energy conversion. The reactions of interest are inner-sphere reactions, which occur on the surface of the electrode, and the biased interface between the electrode surface and the electrolyte is of central importance to the reactivity of an electrode. However, a potential-dependent observation of this buried interface is challenging, which slows the development of catalyst materials. Here we describe a sample architecture using a graphene blanket that allows surface sensitive studies of biased electrochemical interfaces. At the examples of near ambient pressure X-ray photoelectron spectroscopy (NAP-XPS) and environmental scanning electron microscopy (ESEM), we show that the combination of a graphene blanket and a permeable membrane leads to the formation of a liquid thin film between them. This liquid thin film is stable against a water partial pressure below 1 mbar. These properties of the sample assembly extend the study of solid-liquid interfaces to highly surface sensitive techniques, such as electron spectroscopy/microscopy. In fact, photoelectrons with an effective attenuation length of only 10 Å can be detected, which is close to the absolute minimum possible in aqueous solutions. The in-situ cells and the sample preparation necessary to employ our method are comparatively simple. Transferring this approach to other surface sensitive measurement techniques should therefore be straightforward. We see our approach as a starting point for more studies on electrochemical interfaces and surface processes under applied potential. Such studies would be of high value for the rational design of electrocatalysts.
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Affiliation(s)
- Lorenz J. Falling
- Department of Inorganic
Chemistry, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Rik V. Mom
- Department of Inorganic
Chemistry, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Luis E. Sandoval Diaz
- Department of Inorganic
Chemistry, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Siamak Nakhaie
- Department of Inorganic
Chemistry, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Eugen Stotz
- Department of Inorganic
Chemistry, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Danail Ivanov
- Department of Inorganic
Chemistry, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Michael Hävecker
- Department of Inorganic
Chemistry, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
- Department of Heterogeneous Reactions, Max-Planck-Institut für Chemische Energiekonversion, Stiftstr. 34-36, 45470 Mülheim, Germany
| | - Thomas Lunkenbein
- Department of Inorganic
Chemistry, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
| | - Axel Knop-Gericke
- Department of Inorganic
Chemistry, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
- Department of Heterogeneous Reactions, Max-Planck-Institut für Chemische Energiekonversion, Stiftstr. 34-36, 45470 Mülheim, Germany
| | - Robert Schlögl
- Department of Inorganic
Chemistry, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
- Department of Heterogeneous Reactions, Max-Planck-Institut für Chemische Energiekonversion, Stiftstr. 34-36, 45470 Mülheim, Germany
| | - Juan-Jesús Velasco-Vélez
- Department of Inorganic
Chemistry, Fritz-Haber-Institut der Max-Planck-Gesellschaft, Faradayweg 4-6, 14195 Berlin, Germany
- Department of Heterogeneous Reactions, Max-Planck-Institut für Chemische Energiekonversion, Stiftstr. 34-36, 45470 Mülheim, Germany
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8
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Delarmelina M, Nicoletti CD, de Moraes MC, Futuro DO, Bühl M, de C da Silva F, Ferreira VF, de M Carneiro JW. α- and β-Lapachone Isomerization in Acidic Media: Insights from Experimental and Implicit/Explicit Solvation Approaches. Chempluschem 2020; 84:52-61. [PMID: 31950738 DOI: 10.1002/cplu.201800485] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/19/2018] [Revised: 11/01/2018] [Indexed: 11/10/2022]
Abstract
Combined experimental and mixed implicit/explicit solvation approaches were employed to gain insights into the origin of switchable regioselectivity of acid-catalyzed lapachol cyclization and α-/β-lapachone isomerization. It was found that solvating species under distinct experimental conditions stabilized α- and β-lapachone differently, thus altering the identity of the thermodynamic product. The energy profile for lapachol cyclization revealed that this process can occur with low free-energy barriers (lower than 8.0 kcal mol-1 ). For α/β isomerization in a dilute medium, the computed enthalpic barriers are 15.1 kcal mol-1 (α→β) and 14.2 kcal mol-1 (β→α). These barriers are lowered in concentrated medium to 11.5 and 12.6 kcal mol-1 , respectively. Experimental determination of isomers ratio was quantified by HPLC and NMR measurements. These findings provide insights into the chemical behavior of lapachol and lapachone derivatives in more complex environments.
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Affiliation(s)
- Maicon Delarmelina
- Instituto de Química, Universidade Federal Fluminense Niterói, Rio de Janeiro, 24020-141, Brazil
| | - Caroline D Nicoletti
- Faculdade de Farmácia, Universidade Federal Fluminense Niterói, Rio de Janeiro, 24241-002, Brazil
| | - Marcela C de Moraes
- Instituto de Química, Universidade Federal Fluminense Niterói, Rio de Janeiro, 24020-141, Brazil
| | - Debora O Futuro
- Faculdade de Farmácia, Universidade Federal Fluminense Niterói, Rio de Janeiro, 24241-002, Brazil
| | - Michael Bühl
- University of St Andrews, School of Chemistry North Haugh, St Andrews, Fife, KY16 9ST, UK
| | - Fernando de C da Silva
- Instituto de Química, Universidade Federal Fluminense Niterói, Rio de Janeiro, 24020-141, Brazil
| | - Vitor F Ferreira
- Instituto de Química, Universidade Federal Fluminense Niterói, Rio de Janeiro, 24020-141, Brazil.,Faculdade de Farmácia, Universidade Federal Fluminense Niterói, Rio de Janeiro, 24241-002, Brazil
| | - José W de M Carneiro
- Instituto de Química, Universidade Federal Fluminense Niterói, Rio de Janeiro, 24020-141, Brazil
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9
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Sahle CJ, Schroer MA, Niskanen J, Elbers M, Jeffries CM, Sternemann C. Hydration in aqueous osmolyte solutions: the case of TMAO and urea. Phys Chem Chem Phys 2020; 22:11614-11624. [DOI: 10.1039/c9cp06785j] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
X-ray Raman scattering spectroscopy and first principles simulations reveal details of the hydration and hydrogen-bond topology of trimethylamine N-oxide (TMAO) and urea in aqueous solutions.
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Affiliation(s)
| | - Martin A. Schroer
- European Molecular Biology Laboratory (EMBL)
- Hamburg Outstation c/o DESY
- Hamburg 22607
- Germany
| | - Johannes Niskanen
- Department of Physics and Astronomy
- University of Turku
- FI-20014 Turun Yliopisto
- Finland
| | - Mirko Elbers
- Fakultät Physik/DELTA
- Technische Universität Dortmund
- 44221 Dortmund
- Germany
| | - Cy M. Jeffries
- European Molecular Biology Laboratory (EMBL)
- Hamburg Outstation c/o DESY
- Hamburg 22607
- Germany
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10
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Zheng W, Huang C, Sun W, Zhao L. Microstructures of the Sulfonic Acid-Functionalized Ionic Liquid/Sulfuric Acid and Their Interactions: A Perspective from the Isobutane Alkylation. J Phys Chem B 2018; 122:1460-1470. [PMID: 29309149 DOI: 10.1021/acs.jpcb.7b09755] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/29/2022]
Abstract
The all-atom force field for concentrated sulfuric acid (98.30 wt %) was developed in this work based on ab initio calculations. The structural and dynamical properties of sulfuric acid and the mixing behaviors of sulfuric acid with ionic liquids (ILs), i.e., SFIL (1-methyl-3-(propyl-3-sulfonate) imidazolium bisulfate ([PSMim][HSO4])) and non-SFIL (1-methyl-3-propyl imidazolium bisulfate ([PMim][HSO4])), were investigated using a molecular dynamics simulation. For sulfuric acid, most H3O+ ions were found beside HSO4- ions, forming a contact ion pair with the HSO4- ions, and three-dimensional hydrogen-bonding networks existed in the sulfuric acid. Analyses indicate that both ILs could be miscible with sulfuric acid with a strong exothermic character. The new strong interaction site between the sulfonic acid group of SFIL and an H2SO4 molecule through a strong hydrogen-bonding interaction was observed, which was beneficial to the catalytic activity and stability of the sulfuric acid. This observation is in good agreement with the experimental results that indicate SFILs could enhance the reusability of sulfuric acid for the isobutane alkylation about 4-fold compared to that of non-SFILs. Hopefully this work will provide insights into the screening and designing of new isobutane alkylation catalysts based on sulfuric acid and SFILs.
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Affiliation(s)
- Weizhong Zheng
- State Key Laboratory of Chemical Engineering, East China University of Science and Technology , Shanghai 200237, China
| | - Chizhou Huang
- State Key Laboratory of Chemical Engineering, East China University of Science and Technology , Shanghai 200237, China
| | - Weizhen Sun
- State Key Laboratory of Chemical Engineering, East China University of Science and Technology , Shanghai 200237, China
| | - Ling Zhao
- State Key Laboratory of Chemical Engineering, East China University of Science and Technology , Shanghai 200237, China
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11
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Sahle CJ, Schroer MA, Jeffries CM, Niskanen J. Hydration in aqueous solutions of ectoine and hydroxyectoine. Phys Chem Chem Phys 2018; 20:27917-27923. [DOI: 10.1039/c8cp05308a] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/11/2023]
Abstract
We explore the influence of the two osmolytes ectoine and hydroxyectoine on the structure of pure water and aqueous NaCl solutions using non-resonant X-ray Raman scattering spectroscopy at the oxygen K-edge.
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Affiliation(s)
- Christoph J. Sahle
- European Synchrotron Radiation Facility, 71 Avenue des Martyrs
- 38000 Grenoble
- France
| | - Martin A. Schroer
- European Molecular Biology Laboratory (EMBL)
- Hamburg Outstation c/o DESY
- 22607 Hamburg
- Germany
| | - Cy M. Jeffries
- European Molecular Biology Laboratory (EMBL)
- Hamburg Outstation c/o DESY
- 22607 Hamburg
- Germany
| | - Johannes Niskanen
- University of Turku
- Department of Physics and Astronomy
- FI-20014 Turun yliopisto
- Finland
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12
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Niskanen J, Sahle CJ, Gilmore K, Uhlig F, Smiatek J, Föhlisch A. Disentangling structural information from core-level excitation spectra. Phys Rev E 2017; 96:013319. [PMID: 29347119 DOI: 10.1103/physreve.96.013319] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2017] [Indexed: 06/07/2023]
Abstract
Core-level spectra of liquids can be difficult to interpret due to the presence of a range of local environments. We present computational methods for investigating core-level spectra based on the idea that both local structural parameters and the x-ray spectra behave as functions of the local atomic configuration around the absorbing site. We identify correlations between structural parameters and spectral intensities in defined regions of interest, using the oxygen K-edge excitation spectrum of liquid water as a test case. Our results show that this kind of analysis can find the main structure-spectral relationships of ice, liquid water, and supercritical water.
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Affiliation(s)
- Johannes Niskanen
- Helmholtz Zentrum Berlin für Materialien und Energie, Institute For Methods And Instrumentation For Synchrotron Radiation Research, Albert-Einstein-Strasse 15, D-12489 Berlin, Germany
| | - Christoph J Sahle
- ESRF-The European Synchrotron, 71 Avenue des Martyrs, F-38000 Grenoble, France
| | - Keith Gilmore
- ESRF-The European Synchrotron, 71 Avenue des Martyrs, F-38000 Grenoble, France
| | - Frank Uhlig
- Universität Stuttgart, Institute for Computational Physics, Allmandring 3 D-70569 Stuttgart, Germany
| | - Jens Smiatek
- Universität Stuttgart, Institute for Computational Physics, Allmandring 3 D-70569 Stuttgart, Germany
| | - Alexander Föhlisch
- Helmholtz Zentrum Berlin für Materialien und Energie, Institute For Methods And Instrumentation For Synchrotron Radiation Research, Albert-Einstein-Strasse 15, D-12489 Berlin, Germany
- Universität Potsdam, Institut für Physik und Astronomie, Karl-Liebknecht-Strasse 24/25 D-14476 Potsdam-Golm, Germany
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13
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Huotari S, Sahle CJ, Henriquet C, Al-Zein A, Martel K, Simonelli L, Verbeni R, Gonzalez H, Lagier MC, Ponchut C, Moretti Sala M, Krisch M, Monaco G. A large-solid-angle X-ray Raman scattering spectrometer at ID20 of the European Synchrotron Radiation Facility. JOURNAL OF SYNCHROTRON RADIATION 2017; 24:521-530. [PMID: 28244449 DOI: 10.1107/s1600577516020579] [Citation(s) in RCA: 39] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/03/2016] [Accepted: 12/28/2016] [Indexed: 06/06/2023]
Abstract
An end-station for X-ray Raman scattering spectroscopy at beamline ID20 of the European Synchrotron Radiation Facility is described. This end-station is dedicated to the study of shallow core electronic excitations using non-resonant inelastic X-ray scattering. The spectrometer has 72 spherically bent analyzer crystals arranged in six modular groups of 12 analyzer crystals each for a combined maximum flexibility and large solid angle of detection. Each of the six analyzer modules houses one pixelated area detector allowing for X-ray Raman scattering based imaging and efficient separation of the desired signal from the sample and spurious scattering from the often used complicated sample environments. This new end-station provides an unprecedented instrument for X-ray Raman scattering, which is a spectroscopic tool of great interest for the study of low-energy X-ray absorption spectra in materials under in situ conditions, such as in operando batteries and fuel cells, in situ catalytic reactions, and extreme pressure and temperature conditions.
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Affiliation(s)
- S Huotari
- ESRF - The European Synchrotron, CS40220, 38043 Grenoble Cedex 9, France
| | - Ch J Sahle
- ESRF - The European Synchrotron, CS40220, 38043 Grenoble Cedex 9, France
| | - Ch Henriquet
- ESRF - The European Synchrotron, CS40220, 38043 Grenoble Cedex 9, France
| | - A Al-Zein
- ESRF - The European Synchrotron, CS40220, 38043 Grenoble Cedex 9, France
| | - K Martel
- ESRF - The European Synchrotron, CS40220, 38043 Grenoble Cedex 9, France
| | - L Simonelli
- ESRF - The European Synchrotron, CS40220, 38043 Grenoble Cedex 9, France
| | - R Verbeni
- ESRF - The European Synchrotron, CS40220, 38043 Grenoble Cedex 9, France
| | - H Gonzalez
- ESRF - The European Synchrotron, CS40220, 38043 Grenoble Cedex 9, France
| | - M C Lagier
- ESRF - The European Synchrotron, CS40220, 38043 Grenoble Cedex 9, France
| | - C Ponchut
- ESRF - The European Synchrotron, CS40220, 38043 Grenoble Cedex 9, France
| | - M Moretti Sala
- ESRF - The European Synchrotron, CS40220, 38043 Grenoble Cedex 9, France
| | - M Krisch
- ESRF - The European Synchrotron, CS40220, 38043 Grenoble Cedex 9, France
| | - G Monaco
- ESRF - The European Synchrotron, CS40220, 38043 Grenoble Cedex 9, France
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14
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Malček M, Bučinský L, Barbieriková Z, Dorotíková S, Dvoranová D, Brezová V, Rapta P, Biskupič S. Protonation and electronic structure of 2,6-dichlorophenolindophenolate during reduction. A theoretical study including explicit solvent. J Mol Model 2016; 22:251. [PMID: 27686562 DOI: 10.1007/s00894-016-3109-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/02/2016] [Accepted: 09/01/2016] [Indexed: 10/20/2022]
Abstract
Protonation in the two-electron/two-proton reduction processes of 2,6-dichlorophenolindophenolate (DCIP) is investigated combining density functional theory (DFT) and molecular dynamics (MD) methods. DCIP (anion), DCIP•- (radical anion), and DCIP2- (dianion) are considered, including the electronic structure analysis from the prospective of quantum theory of atoms and molecules (QTAIM). It is shown that oxygen on the indophenolate moiety and nitrogen are the first and/or the second proton acceptor sites and their energetic order depends on the total charge of the system. MD simulations of differently charged species interacting with the solvent molecules have been performed for methanol, water, and oxonium cation (H3O+). Methanol and water molecules are found to form only hydrogen bonds with the solute irrespective of its charge. The calculated pKa values show that the imino group of DCIPH- is a weaker acid than water. While in the case of DCIP (and DCIP•-) plus oxonium cation, proton transfer from the solvent to the solute was evidenced for both aforementioned acceptor sites. In addition, MD simulations of bulks containing 15 and 43 molecules of water around the DCIP molecule have been performed, revealing the formation of 2-4 hydrogen bonds. Graphical Abstract 2,6-Dichlorophenolindophenolate interacts with solvent molecules (water, oxonium cation and methanol). Hydrogen transfer and electronic structure are studied by DFT and molecular dynamics methods.
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Affiliation(s)
- Michal Malček
- Institute of Physical Chemistry and Chemical Physics, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37, Bratislava, Slovak Republic. .,LAQV@REQUIMTE, Department of Chemistry and Biochemistry, Faculty of Sciences, University of Porto, Rua do Campo Alegre 687, 4169-007, Porto, Portugal.
| | - Lukáš Bučinský
- Institute of Physical Chemistry and Chemical Physics, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37, Bratislava, Slovak Republic
| | - Zuzana Barbieriková
- Institute of Physical Chemistry and Chemical Physics, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37, Bratislava, Slovak Republic
| | - Sandra Dorotíková
- Institute of Physical Chemistry and Chemical Physics, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37, Bratislava, Slovak Republic
| | - Dana Dvoranová
- Institute of Physical Chemistry and Chemical Physics, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37, Bratislava, Slovak Republic
| | - Vlasta Brezová
- Institute of Physical Chemistry and Chemical Physics, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37, Bratislava, Slovak Republic
| | - Peter Rapta
- Institute of Physical Chemistry and Chemical Physics, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37, Bratislava, Slovak Republic
| | - Stanislav Biskupič
- Institute of Physical Chemistry and Chemical Physics, Faculty of Chemical and Food Technology, Slovak University of Technology in Bratislava, Radlinského 9, SK-812 37, Bratislava, Slovak Republic
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15
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Niskanen J, Sahle CJ, Ruotsalainen KO, Müller H, Kavčič M, Žitnik M, Bučar K, Petric M, Hakala M, Huotari S. Sulphur Kβ emission spectra reveal protonation states of aqueous sulfuric acid. Sci Rep 2016; 6:21012. [PMID: 26888159 PMCID: PMC4757876 DOI: 10.1038/srep21012] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2015] [Accepted: 01/14/2016] [Indexed: 11/08/2022] Open
Abstract
In this paper we report an X-ray emission study of bulk aqueous sulfuric acid. Throughout the range of molarities from 1 M to 18 M the sulfur Kβ emission spectra from H2SO4 (aq) depend on the molar fractions and related deprotonation of H2SO4. We compare the experimental results with results from emission spectrum calculations based on atomic structures of single molecules and structures from ab initio molecular dynamics simulations. We show that the S Kβ emission spectrum is a sensitive probe of the protonation state of the acid molecules. Using non-negative matrix factorization we are able to extract the fractions of different protonation states in the spectra, and the results are in good agreement with the simulation for the higher part of the concentration range.
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Affiliation(s)
- Johannes Niskanen
- University of Helsinki, Department of Physics, Helsinki, FI-00014, Finland
| | - Christoph J. Sahle
- University of Helsinki, Department of Physics, Helsinki, FI-00014, Finland
- European Synchrotron Radiation Facility, ESRF, Grenoble, France
| | | | - Harald Müller
- European Synchrotron Radiation Facility, ESRF, Grenoble, France
| | - Matjaž Kavčič
- Jožef Stefan Institute, Jamova cesta 39, SI-1001 Ljubljana, Slovenia
| | - Matjaž Žitnik
- Jožef Stefan Institute, Jamova cesta 39, SI-1001 Ljubljana, Slovenia
- Faculty of Mathematics and Physics, University of Ljubljana, Jadranska ulica 19, Ljubljana, Slovenia
| | - Klemen Bučar
- Jožef Stefan Institute, Jamova cesta 39, SI-1001 Ljubljana, Slovenia
| | - Marko Petric
- Jožef Stefan Institute, Jamova cesta 39, SI-1001 Ljubljana, Slovenia
| | - Mikko Hakala
- University of Helsinki, Department of Physics, Helsinki, FI-00014, Finland
| | - Simo Huotari
- University of Helsinki, Department of Physics, Helsinki, FI-00014, Finland
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16
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Sahle CJ, Schroer MA, Juurinen I, Niskanen J. Influence of TMAO and urea on the structure of water studied by inelastic X-ray scattering. Phys Chem Chem Phys 2016; 18:16518-26. [DOI: 10.1039/c6cp01922f] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We present a study on the influence of the naturally occurring organic osmolytes tri-methylamine N-oxide (TMAO) and urea on the bulk structure of water using X-ray Raman scattering spectroscopy.
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Affiliation(s)
| | - Martin A. Schroer
- Deutsches Elektronen-Synchrotron DESY
- 22607 Hamburg
- Germany
- The Hamburg Centre for Ultrafast Imaging (CUI)
- 22761 Hamburg
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