Spider Silk: Mother Nature's Bio-Superlens

Decoding silkworm spinning programmed by pH and metal ions

Silk is one of the toughest fibrous materials known despite spun at ambient temperature and pressure with water as a solvent. It is a great challenge to reproduce high-performance artificial fibers comparable to natural silk by bionic for the incomplete understanding of silkworm spinning in vivo. Here, we found that amphipol and digitonin stabilized the structure of natural silk fibroin (NSF) by a large-scale screening in vitro, and then studied the close-to-native ultrastructure and hierarchical assembly of NSF in the silk gland lumen. Our study showed that NSF formed reversible flexible nanofibrils mainly composed of random coils with a sedimentation coefficient of 5.8 S and a diameter of about 4 nm, rather than a micellar or rod-like structure assembled by the aggregation of globular NSF molecules. Metal ions were required for NSF nanofibril formation. The successive pH decrease from posterior silk gland (PSG) to anterior silk gland (ASG) resulted in a gradual increase in NSF hydrophobicity, thus inducing the sol-gelation transition of NSF nanofibrils. NSF nanofibrils were randomly dispersed from PSG to ASG-1, and self-assembled into anisotropic herringbone patterns at ASG-2 near the spinneret ready for silkworm spinning. Our findings reveal the controlled self-assembly mechanism of the multi-scale hierarchical architecture of NSF from nanofibrils to herringbone patterns programmed by metal ions and pH gradient, which provides novel insights into the spinning mechanism of silk-secreting animals and bioinspired design of high-performance fibers.

Influence of Spider Silk Protein Structure on Mechanical and Biological Properties for Energetic Material Detection

Spider silk protein, renowned for its excellent mechanical properties, biodegradability, chemical stability, and low immune and inflammatory response activation, consists of a core domain with a repeat sequence and non-repeating sequences at the N-terminal and C-terminal. In this review, we focus on the relationship between the silk structure and its mechanical properties, exploring the potential applications of spider silk materials in the detection of energetic materials.

Roadmap on Label-Free Super-Resolution Imaging

Label-free super-resolution (LFSR) imaging relies on light-scattering processes in nanoscale objects without a need for fluorescent (FL) staining required in super-resolved FL microscopy. The objectives of this Roadmap are to present a comprehensive vision of the developments, the state-of-the-art in this field, and to discuss the resolution boundaries and hurdles which need to be overcome to break the classical diffraction limit of the LFSR imaging. The scope of this Roadmap spans from the advanced interference detection techniques, where the diffraction-limited lateral resolution is combined with unsurpassed axial and temporal resolution, to techniques with true lateral super-resolution capability which are based on understanding resolution as an information science problem, on using novel structured illumination, near-field scanning, and nonlinear optics approaches, and on designing superlenses based on nanoplasmonics, metamaterials, transformation optics, and microsphere-assisted approaches. To this end, this Roadmap brings under the same umbrella researchers from the physics and biomedical optics communities in which such studies have often been developing separately. The ultimate intent of this paper is to create a vision for the current and future developments of LFSR imaging based on its physical mechanisms and to create a great opening for the series of articles in this field.

Photo-elasticity of silk fibroin harnessing whispering gallery modes

Silk fibroin is an important biomaterial for photonic devices in wearable systems. The functionality of such devices is inherently influenced by the stimulation from elastic deformations, which are mutually coupled through photo-elasticity. Here, we investigate the photo-elasticity of silk fibroin employing optical whispering gallery mode resonation of light at the wavelength of 1550 nm. The fabricated amorphous (Silk I) and thermally-annealed semi-crystalline structure (Silk II) silk fibroin thin film cavities display typical Q-factors of about 1.6 × 10⁴. Photo-elastic experiments are performed tracing the TE and TM shifts of the whispering gallery mode resonances upon application of an axial strain. The strain optical coefficient K' for Silk I fibroin is found to be 0.059 ± 0.004, with the corresponding value for Silk II being 0.129 ± 0.004. Remarkably, the elastic Young's modulus, measured by Brillouin light spectroscopy, is only about 4% higher in the Silk II phase. However, differences between the two structures are pronounced regarding the photo-elastic properties due to the onset of β-sheets that dominates the Silk II structure.

High-quality manipulable fiber-microsphere for super-resolution microscopy

Despite the gain in resolution brought by microsphere (MS)-assisted microscopy, it has always faced several limitations, such as a limited field of view, surface defects, low contrast, and lack of manipulability. This Letter presents a new type of MS created at the tip of an optical fiber, which we call a fiber microsphere (fMS). The fMS is made from a single-mode or coreless fiber, molten and stretched, ensuring high homogeneity and a sphere diameter smaller than the fiber itself. In addition, the connection between the fMS and the fiber makes scanning the sample a simple task, offering a solution to the difficulties of handling. The fabrication procedure of the fMS and the optical system used in the study are detailed. Our measurements show a clear superiority of the fMS over the soda-lime MS in resolving power and imaging performance.

Focusing light with a metal film coated patchy particle

Microsphere-assisted super-resolution imaging is a promising technique that can significantly enhance the resolution of conventional optical microscopes. The focus of a classical microsphere is called photonic nanojet, which is a symmetric high-intensity electromagnetic field. Recently, patchy microspheres have been reported to have superior imaging performance than pristine microspheres, and coating microspheres with metal films leads to the formation of photonic hooks, which can enhance the imaging contrast of microspheres. Understanding the influence of metal patches on the near-field focusing of patchy particles is important for the rational design of a nanostructured microlens. In this work, we theoretically and experimentally showed that the light waves can be focused and engineered using patchy particles. When coating dielectric particles with Ag films, light beams with a hook-like structure or S-shaped structure can be generated. Simulation results show that the waveguide ability of metal films and the geometric asymmetry of patchy particles cause the formation of S-shaped light beams. Compared with classical photonic hooks, S-shaped photonic hooks have a longer effective length and a smaller beam waist at far-field region. Experiments were also carried out to demonstrate the generation of classical and S-shaped photonic hooks from patchy microspheres.

Binary solvent-exchange-induced self-assembly of silk fibroin birefringent fibers for optical applications

To generate birefringence in artificial materials has attracted increasing attention in terms of their potential for applications in sensor, tissue engineering and optical devices. Silk materials with patterned structures presented unique optical features, however, effectively fabricating of structural anisotropy in silk materials to directly tailor their birefringence is still challenging. Silk fibroin birefringent fibers (SBFs) with tunable birefringence were obtained in this study via a strategy that combined injection technique and binary solvent-exchange-induced self-assembly (BSEISA). The structural deformation of these SBFs that introduced by external stimulus such as tensile and solvent swelling was critical to their birefringence. As a result, pink, yellow, green, cyan, and purple were successfully achieved in the interference color of the SBFs with an exchanging solvent of 25, 55, 75, 90 wt% ethanol aqueous solution, and methanol respectively. Moreover, we respectively exchanged these SBFs against with Congo red (SBF-CR), methyl orange (SBF-MO), methylene blue (SBF-MB) and rhodamine B (SBF-RhB) solutions to produce fibers with diversity in their birefringent performance. Two types of patterns were designed and thereafter constructed by (1) SBF\SBF-CR\SBF-RhB, and (2) SBF\SBF-MB\SBF-CR. Interestingly, the patterns both displayed a letter of "A" in natural light, while displayed different letters of (1) "H" and (2) "U" in polarized light. This study demonstrated that these SBFs with unique optical and birefringent performances are anticipated to act as sensors and code labels for optical applications.

Biocompatible spider silk-based metal-dielectric fiber optic sugar sensor

Various optical components employed in biomedical applications have been fabricated using spider silk because of its superior properties, such as elasticity, tensile strength, biodegradability, and biocompatibility. In this study, a highly sensitive fiber optic sugar sensor is fabricated using metal-nanolayer-coated spider silk. The spider silk, which is directly collected from Nephila pilipes, a giant wood spider, is naturally a protein-based biopolymer with great flexibility, low attenuation, and easy functionalization. The surface of the spider silk-based fiber is coated with a metal nano-layer by using the glancing angle deposition technique. This fiber optic sugar sensor is based on the principle of the change in the refractive indices of sugar solutions. The attained experimental results show that the proposed sugar sensor is highly sensitive in the detection of fructose, sucrose, and glucose concentrations. This work may provide a new way to realize precise and sensitive online sugar measurements for point-of-care diagnostics.

Microlens-assisted microscopy for biology and medicine

The addition of dielectric transparent microlens in the optical scheme is an effective and at the same time simple and inexpensive way to increase the resolution of a light microscope. For these purposes, spherical and cylindrical microlenses with a diameter of 1-100 μm are usually used. The microlens focuses the light into a narrow beam called a photonic nanojet. An enlarged virtual image is formed, which is captured by the objective of the light microscope. In addition to microscopy, the microlenses are successfully applied to amplify optical signals, increase the trapping force of optical tweezers and are used in microsurgery. This review considers the design and principle of microlens-assisted microscopes. Taking into account the advantages of the super-resolution optical methods for research in life science, the examples of the use of the microlenses in biomedical practice are discussed in detail.

Special Issue on Photonic Jet: Science and Application

Photonic jets (PJs) are important mesoscale optical phenomena arising from electromagnetic waves interacting with dielectric particles with sizes around several to several tens wavelengths (~2–40 λ) [...]

Optical-force-controlled red-blood-cell microlenses for subwavelength trapping and imaging

We demonstrate that red blood cells (RBCs), with an adjustable focusing effect controlled by optical forces, can act as bio-microlenses for trapping and imaging subwavelength objects. By varying the laser power injected into a tapered fiber probe, the shape of a swelled RBC can be changed from spherical to ellipsoidal by the optical forces, thus adjusting the focal length of such bio-microlens in a range from 3.3 to 6.5 µm. An efficient optical trapping and a simultaneous fluorescence detecting of a 500-nm polystyrene particle have been realized using the RBC microlens. Assisted by the RBC microlens, a subwavelength imaging has also been achieved, with a magnification adjustable from 1.6× to 2×. The RBC bio-microlenses may offer new opportunities for the development of fully biocompatible light-driven devices in diagnosis of blood disease.

Metal-Nanostructure-Decorated Spider Silk for Highly Sensitive Refractive Index Sensing

Highly sensitive detection of refractive index (RI) is essential for the analysis of the bio-microenvironment and basic cellular reactions. To achieve this, optic-fiber RI sensors based on localized surface plasmon resonance (LSPR) have been widely used for their flexibility and high sensitivity. However, the current optic-fiber RI sensors are mainly fabricated using glass, which makes them face the challenges in biocompatibility and biosafety. In this work, a RI sensor with high sensitivity is fabricated using metal-nanostructure-decorated spider silk. The spider silk, which is directly dragged from Araneus ventricosus, is natural protein-based biopolymer with low attenuation, good biocompatibility and biodegradability, large RI, great flexibility, and easy functionalization. Hence, the spider silk can be an ideal alternative to glass for sensing in biological environments with a wide RI range. Different kinds of metal nanostructures, such as gold nanorods (GNRs), gold nanobipyramids (GNBP), and Ag@GNRs, are decorated on the surface of the spider silk utilizing the surface viscidity of the silk. By directing a beam of white light into the spider silk, the LSPR of the metal nanostructures was excited and a highly sensitive RI sensing (the highest sensitivity of 1746 nm per refractive index was achieved on the GNBP-decorated spider silk) was obtained. This work may pave a new way to precise and sensitive biosensing and bioanalysis.

Gelation Methods to Assemble Fibrous Proteins

Gelation is an efficient way to fabricate fibrous protein materials. Briefly, it is an aggregation process where protein molecules assembly from a random structure into an organized structure such as nanofibrillar networks. According to their mechanisms, the fibrous proteins gelation can be classified into physical gelation and chemical gelation. The physical gelation is formed by the conformational transformation of fibroin proteins, which can be triggered by temperature, concentration, pH, or shear force. On the other hand, the chemical gelation is to cross-link fibrous proteins through chemical and/or enzymatic reactions. In this chapter, we summarize the protocols for preparing fibrous protein hydrogels, including both physical and chemical methods. The mechanisms of these gelation methods are also highlighted.

Characterization of cell-induced astigmatism in high-resolution imaging

High-resolution and super-resolution techniques become more frequently used in thick, inhomogeneous samples. In particular for imaging life cells and tissue in which one wishes to observe a biological process at minimal interference and in the natural environment, sample inhomogeneities are unavoidable. Yet sample-inhomogeneities are paralleled by refractive index variations, for example between the cell organelles and the surrounding medium, that will result in the refraction of light, and therefore lead to sample-induced astigmatism. Astigmatism in turn will result in positional inaccuracies of observations that are at the heart of all super-resolution techniques. Here we introduce a simple model and define a figure-of-merit that allows one to quickly assess the importance of astigmatism for a given experimental setting. We found that astigmatism caused by the cell's nucleus can easily lead to aberrations up to hundreds of nanometers, well beyond the accuracy of all super-resolution techniques. The astigmatism generated by small objects, like bacteria or vesicles, appear to be small enough to be of any significance in typical super-resolution experimentation.

Lipid droplets as endogenous intracellular microlenses

Using a single biological element as a photonic component with well-defined features has become a new intriguing paradigm in biophotonics. Here we show that endogenous lipid droplets in the mature adipose cells can behave as fully biocompatible microlenses to strengthen the ability of microscopic imaging as well as detecting intra- and extracellular signals. By the assistance of biolenses made of the lipid droplets, enhanced fluorescence imaging of cytoskeleton, lysosomes, and adenoviruses has been achieved. At the same time, we demonstrated that the required excitation power can be reduced by up to 73%. The lipidic microlenses are finely manipulated by optical tweezers in order to address targets and perform their real-time imaging inside the cells. An efficient detecting of fluorescence signal of cancer cells in extracellular fluid was accomplished due to the focusing effect of incident light by the lipid droplets. The lipid droplets acting as endogenous intracellular microlenses open the intriguing route for a multifunctional biocompatible optics tool for biosensing, endoscopic imaging, and single-cell diagnosis.

Label-free non-invasive subwavelength-resolution imaging using yeast cells as biological lenses

There is a growing interest to use live cells to replace the widely used non-biological microsphere lenses. In this work, we demonstrate the use of yeast cells for such imaging purpose. Using fiber-based optical trapping technique, we trap a chain of three yeast cells and bring them to the vicinity of imaging objects. These yeast cells work as near-field magnifying lenses and simultaneously pick up the sub-diffraction information of the nanoscale objects under each cell and project them into the far-field. The experimental results demonstrated that Blu-ray disc of 100 nm feature can be clearly resolved in a parallel manner by each cell.

Photonic Nanojet Modulation Achieved by a Spider-Silk-Based Metal–Dielectric Dome Microlens

The photonic nanojet is a non-resonance focusing phenomenon with high intensity and narrow spot that can serve as a powerful biosensor for in vivo detection of red blood cells, micro-organisms, and tumor cells in blood. In this study, we first demonstrated photonic nanojet modulation by utilizing a spider-silk-based metal–dielectric dome microlens. A cellar spider was employed in extracting the silk fiber, which possesses a liquid-collecting ability to form a dielectric dome microlens. The metal casing on the surface of the dielectric dome was coated by using a glancing angle deposition technique. Due to the nature of surface plasmon polaritons, the characteristics of photonic nanojets are strongly modulated by different metal casings. Numerical and experimental results showed that the intensity of the photonic nanojet was increased by a factor of three for the gold-coated dome microlens due to surface plasmon resonance. The spider-silk-based metal-dielectric dome microlens could be used to scan a biological target for large-area imaging with a conventional optical microscope.

High resolution imaging of viruses: Scanning probe microscopy and related techniques

Scanning probe microscopy is a group of measurements that provides 3D visualization of viruses in different environmental conditions including liquids and air. Besides 3D topography it is possible to measure the properties like mechanical rigidity and stability, adhesion, tendency to crystallization, surface charge, etc. Choosing the right substrate and scanning parameters makes it much easier to obtain reliable data. Rational interpretation of experimental results should take into account possible artifacts, proper filtering and data presentation using specially designed software packages. Animal and human virus characterization is in the focus of many intensive studies because of their potential harm to higher organisms. The article focuses on high-resolution visualization of plant viruses. Tobacco mosaic virus, potato viruses X and B and others are not dangerous for the human being and are widely used in different applications such as vaccine preparation, construction of building units in nanotechnology and material science applications, nanoparticle production and delivery, and even metrology. The methods of virus's deposition, visualization, and consequent image processing and interpretation are described in details. Specific examples of viruses imaging are illustrated using the FemtoScan Online software, which has typical and all the necessary built-in functions for constructing three-dimensional images, their processing and analysis. Despite visible progress in visualizing the viruses using probe microscopy, many unresolved problems still remain. At present time the probe microscopy data on viruses is not systemized. There is no descriptive atlas of the images and morphology as revealed by this type of high resolution microscopy. It is worth emphasizing that new virus investigation methods will appear due to the progress of science.

Super-Resolution Imaging by Dielectric Superlenses: TiO2 Metamaterial Superlens versus BaTiO3 Superlens

All-dielectric superlens made from micro and nano particles has emerged as a simple yet effective solution to label-free, super-resolution imaging. High-index BaTiO3 Glass (BTG) microspheres are among the most widely used dielectric superlenses today but could potentially be replaced by a new class of TiO2 metamaterial (meta-TiO2) superlens made of TiO2 nanoparticles. In this work, we designed and fabricated TiO2 metamaterial superlens in full-sphere shape for the first time, which resembles BTG microsphere in terms of the physical shape, size, and effective refractive index. Super-resolution imaging performances were compared using the same sample, lighting, and imaging settings. The results show that TiO2 meta-superlens performs consistently better over BTG superlens in terms of imaging contrast, clarity, field of view, and resolution, which was further supported by theoretical simulation. This opens new possibilities in developing more powerful, robust, and reliable super-resolution lens and imaging systems.

Biophotonic probes for bio-detection and imaging

The rapid development of biophotonics and biomedical sciences makes a high demand on photonic structures to be interfaced with biological systems that are capable of manipulating light at small scales for sensitive detection of biological signals and precise imaging of cellular structures. However, conventional photonic structures based on artificial materials (either inorganic or toxic organic) inevitably show incompatibility and invasiveness when interfacing with biological systems. The design of biophotonic probes from the abundant natural materials, particularly biological entities such as virus, cells and tissues, with the capability of multifunctional light manipulation at target sites greatly increases the biocompatibility and minimizes the invasiveness to biological microenvironment. In this review, advances in biophotonic probes for bio-detection and imaging are reviewed. We emphatically and systematically describe biological entities-based photonic probes that offer appropriate optical properties, biocompatibility, and biodegradability with different optical functions from light generation, to light transportation and light modulation. Three representative biophotonic probes, i.e., biological lasers, cell-based biophotonic waveguides and bio-microlenses, are reviewed with applications for bio-detection and imaging. Finally, perspectives on future opportunities and potential improvements of biophotonic probes are also provided.

Upconversion Nanoparticle Decorated Spider Silks as Single-Cell Thermometers

Noninvasive and sensitive thermometry of a single living cell is crucial to the analysis of fundamental cellular processes and applications to cancer diagnosis. Optical fibers decorated with temperature-sensitive nanomaterials have become widely used instruments for biosensing temperature. However, current silica fibers exhibit low compatibility and degradability in biosystems. In this work, we employ spider silks as natural optical fibers to construct biocompatible thermometers. The spider silks were drawn directly from Araneus ventricosus and were decorated with core-shell upconversion nanoparticles (UCNPs) via a photophoretic effect. By measuring the fluorescence spectra of the UCNPs on the spider silks, the membrane temperature of a single breast cancer cell was obtained with absolute and relative sensitivities ranging from 3.3 to 4.5 × 10^-3 K^-1 and 0.2 to 0.8% K^-1, respectively. Additionally, the temperature variation during apoptosis was monitored by the thermometer in real time. This work provides a biocompatible tool for precise biosensing and single-cell analysis.

Super-Resolution Imaging with Direct Laser Writing-Printed Microstructures

Dielectric microstructures coupled with a conventional optical microscope have been proven to be a successful way to achieve super-resolution imaging. However, a limitation of such super-resolution imaging is the microstructure fabrication ability, which generally provides natural structures (such as spherical, hemispherical, superhemispherical microlenses, and so on). Meanwhile, the influences of microstructures with complex shapes on the super-resolved imaging still remain unknown. In this paper, direct laser writing (DLW) lithography is used to produce a series of complex microstructures, which are capable of achieving super-resolution imaging in the optical far-field region. Cylinder, truncated cone, hemisphere, and protruding hemisphere microstructures are successfully fabricated by this 3D printing technology, allowing us to resolve features as small as 100 nm under classical microscopy. Moreover, different microstructures lead to different photonic nanojet (PNJ) illuminations and collection efficiencies, resulting in a critical role in super-resolved imaging. The microstructures with spherical surfaces can easily collect the light scattered by the object and convert the high-spatial-frequency evanescent waves into propagating waves.

From Silk Spinning to 3D Printing: Polymer Manufacturing using Directed Hierarchical Molecular Assembly

Silk spinning offers an evolution-based manufacturing strategy for industrial polymer manufacturing, yet remains largely inaccessible as the manufacturing mechanisms in biological and synthetic systems, especially at the molecular level, are fundamentally different. The appealing characteristics of silk spinning include the sustainable sourcing of the protein material, the all-aqueous processing into fibers, and the unique material properties of silks in various formats. Substantial progress has been made to mimic silk spinning in artificial manufacturing processes, despite the gap between natural and artificial systems. This report emphasizes the universal spinning conditions utilized by both spiders and silkworms to generate silk fibers in nature, as a scientific and technical framework for directing molecular assembly into high-performance structures. The preparation of regenerated silk feedstocks and mimicking native spinning conditions in artificial manufacturing are discussed, as is progress and challenges in fiber spinning and 3D printing of silk-composites. Silk spinning is a biomimetic model for advanced and sustainable artificial polymer manufacturing, offering benefits in biomedical applications for tissue scaffolds and implantable devices.

Recombinant Spidroins as the Basis for New Materials

Spider web proteins are unique materials created by nature that, considering the combination of their properties, do not have analogues among natural or human-created materials. Obtaining significant amounts of these proteins from natural sources is not feasible. Biotechnological manufacturing in heterological systems is complicated by the very high molecular weight of spidroins and their specific amino acid composition. Obtaining recombinant analogues of spidroins in heterological systems, mainly in bacteria and yeast, has become a compromise solution. Because they can self-assemble, these proteins can form various materials, such as fibers, films, 3D-foams, hydrogels, tubes, and microcapsules. The effectiveness of spidroin hydrogels in deep wound healing, as 3D scaffolds for bone tissue regeneration and as oriented fibers for axon growth and nerve tissue regeneration, was demonstrated in animal models. The possibility to use spidroin micro- and nanoparticles for drug delivery was demonstrated, including the use of modified spidroins for virus-free DNA delivery into animal cell nuclei. In the past few years, significant interest has arisen concerning the use of these materials as biocompatible and biodegradable soft optics to construct photonic crystal super lenses and fiber optics and as soft electronics to use in triboelectric nanogenerators. This review summarizes the latest achievements in the field of spidroin production, the creation of materials based on them, the study of these materials as a scaffold for the growth, proliferation, and differentiation of various types of cells, and the prospects for using these materials for medical applications (e.g., tissue engineering, drug delivery, coating medical devices), soft optics, and electronics. Accumulated data suggest the use of recombinant spidroins in medical practice in the near future.

Unibody microscope objective tipped with a microsphere: design, fabrication, and application in subwavelength imaging

Microsphere-based subwavelength imaging technique was first demonstrated in 2011. After nearly a decade of efforts, such technique has spawned numerous interests in fields such as laser nano-machining, imaging, sensing, and biological detection. For wider industrial-scale application of the technique, a robust and low-cost objective lens incorporating a microsphere lens is highly desired and sought by many researchers. In this work, we demonstrate a unibody microscope objective lens formed by tipping a high-index microsphere onto a plano-convex lens and subsequently fitting them into a conventional objective lens. We call this the plano-convex-microsphere (PCM) objective, which resembles the appearance and operation of an ordinary microscope objective while providing super-resolving power in discerning subwavelength 100 nm features ($\lambda /{4}.{7}$λ/4.7) in air and far-field conditions. The imaging performance of the PCM objective, along with the working distance, has been systematically investigated. It has a calibrated resolution of $\lambda /{3}$λ/3 in the far field, a numerical aperture of 1.57, and a working distance of 3.5 µm. With the assistance of a scanning process, larger-area imaging is realized. The PCM objective can be easily adapted to existing microscope systems and is appealing for commercialization.

Biopolymeric photonic structures: design, fabrication, and emerging applications

Biological photonic structures can precisely control light propagation, scattering, and emission via hierarchical structures and diverse chemistry, enabling biophotonic applications for transparency, camouflaging, protection, mimicking and signaling. Corresponding natural polymers are promising building blocks for constructing synthetic multifunctional photonic structures owing to their renewability, biocompatibility, mechanical robustness, ambient processing conditions, and diverse surface chemistry. In this review, we provide a summary of the light phenomena in biophotonic structures found in nature, the selection of corresponding biopolymers for synthetic photonic structures, the fabrication strategies for flexible photonics, and corresponding emerging photonic-related applications. We introduce various photonic structures, including multi-layered, opal, and chiral structures, as well as photonic networks in contrast to traditionally considered light absorption and structural photonics. Next, we summarize the bottom-up and top-down fabrication approaches and physical properties of organized biopolymers and highlight the advantages of biopolymers as building blocks for realizing unique bioenabled photonic structures. Furthermore, we consider the integration of synthetic optically active nanocomponents into organized hierarchical biopolymer frameworks for added optical functionalities, such as enhanced iridescence and chiral photoluminescence. Finally, we present an outlook on current trends in biophotonic materials design and fabrication, including current issues, critical needs, as well as promising emerging photonic applications.

Microsphere-assisted interferometry with high numerical apertures for 3D topography measurements

Improving the lateral resolution is a key focus of the research on optical measuring systems to expand the fields of application for optical metrology. By means of microspheres put on an object in a microscope, and therefore used as a near-field support, it has already been shown that a superresolution of structures below Abbe's diffraction limit is possible. The following investigations give more detailed theoretical and experimental insight into the physical mechanisms responsible for the transition of near-field information to the far field. In particular, the effects of microspheres as near-field support on the behavior of phase-evaluating interference microscopes close to the optical resolution limit are studied experimentally as well as with numerical simulations. Special attention is drawn to measured data taken with a Linnik microscope of high numerical aperture. Finally, the measurement results of grating structures with a period below Abbe's diffraction limit are presented.

All-dielectric concentration of electromagnetic fields at the nanoscale: the role of photonic nanojets

The photonic nanojet (PNJ) is a narrow high-energy beam that was originally found on the back side of all-dielectric spherical structures. It is a unique type of energy concentration mode. The field of PNJs has experienced rapid growth in the past decade: nonspherical and even pixelized PNJ generators based on new physics and principles along with extended photonic applications from linear optics to nonlinear optics have driven the re-evaluation of the role of PNJs in optics and photonics. In this article, we give a comprehensive review for the emerging sub-topics in the past decade with a focus on two specific areas: (1) PNJ generators based on natural materials, artificial materials and nanostructures, and even programmable systems instead of conventional dielectric geometries such as microspheres, cubes, and trihedral prisms, and (2) the emerging novel applications in both linear and nonlinear optics that are built upon the specific features of PNJs. The extraordinary features of PNJs including subwavelength concentration of electromagnetic energy, high intensity focusing spot, and lower Joule heating as compared to plasmonic resonance systems, have made PNJs attractive to diverse fields spanning from optical imaging, nanofabrication, and integrated photonics to biosensing, optical tweezers, and disease diagnosis.

Spider silk colour covaries with thermal properties but not protein structure

Understanding how and why animal secretions vary in property has important biomimetic implications as desirable properties might covary. Spider major ampullate (MA) silk, for instance, is a secretion earmarked for biomimetic applications, but many of its properties vary among and between species across environments. Here, we tested the hypothesis that MA silk colour, protein structure and thermal properties covary when protein uptake is manipulated in the spider Trichonephila plumipes. We collected silk from adult female spiders maintained on a protein-fed or protein-deprived diet. Based on spectrophotometric quantifications, we classified half the silks as 'bee visible' and the other half 'bee invisible'. Wide angle X-ray diffraction and differential scanning calorimetry were then used to assess the silk's protein structure and thermal properties, respectively. We found that although protein structures and thermal properties varied across our treatments only the thermal properties covaried with colour. This ultimately suggests that protein structure alone is not responsible for MA silk thermal properties, nor does it affect silk colours. We speculate that similar ecological factors act on silk colour and thermal properties, which should be uncovered to inform biomimetic programmes.

Single-cell biomagnifier for optical nanoscopes and nanotweezers

Optical microscopes and optical tweezers, which were invented to image and manipulate microscale objects, have revolutionized cellular and molecular biology. However, the optical resolution is hampered by the diffraction limit; thus, optical microscopes and optical tweezers cannot be directly used to image and manipulate nano-objects. The emerging plasmonic/photonic nanoscopes and nanotweezers can achieve nanometer resolution, but the high-index material structures will easily cause mechanical and photothermal damage to biospecimens. Here, we demonstrate subdiffraction-limit imaging and manipulation of nano-objects by a noninvasive device that was constructed by trapping a cell on a fiber tip. The trapped cell, acting as a biomagnifier, could magnify nanostructures with a resolution of 100 nm (λ/5.5) under white-light microscopy. The focus of the biomagnifier formed a nano-optical trap that allowed precise manipulation of an individual nanoparticle with a radius of 50 nm. This biomagnifier provides a high-precision tool for optical imaging, sensing, and assembly of bionanomaterials.

Formation of high-quality photonic nanojets by decorating spider silk

The photonic nanojet is a highly concentrated beam with low divergence on the shadow side of dielectric microparticles. In this Letter, we first theoretically and experimentally investigate the formation of high-quality photonic nanojets by decorating spider silk. The dragline silks are directly extracted from cellar spiders and capable of efficiently collecting ultraviolet cure adhesive. The liquid-collecting capacity of the captured silk is the result of a singular fiber structure with periodic spindle knots. Using a scanning-optical-microscope system, we show that high-quality photonic nanojets are generated by silk fiber with spindle knots. With the variation in spindle-knot dimensions, the properties of photonic nanojets, such as intensity distribution, focal length, and full width at half-maximum, are able to tune flexibly. By combining the unique biocompatibility, flexibility, and tensile strength, the silk filaments with spindle knots pave a potential way for original bio-photonic applications.

Nano-Enabled Approaches to Chemical Imaging in Biosystems

Understanding and predicting how biosystems function require knowledge about the dynamic physicochemical environments with which they interact and alter by their presence. Yet, identifying specific components, tracking the dynamics of the system, and monitoring local environmental conditions without disrupting biosystem function present significant challenges for analytical measurements. Nanomaterials, by their very size and nature, can act as probes and interfaces to biosystems and offer solutions to some of these challenges. At the nanoscale, material properties emerge that can be exploited for localizing biomolecules and making chemical measurements at cellular and subcellular scales. Here, we review advances in chemical imaging enabled by nanoscale structures, in the use of nanoparticles as chemical and environmental probes, and in the development of micro- and nanoscale fluidic devices to define and manipulate local environments and facilitate chemical measurements of complex biosystems. Integration of these nano-enabled methods will lead to an unprecedented understanding of biosystem function.

De Novo Design of Recombinant Spider Silk Proteins for Material Applications

Spider silks are well known for their superior mechanical properties that are stronger and tougher than steel despite being assembled at close to ambient conditions and using water as the solvent. However, it is a significant challenge to utilize spider silks for practical applications due to their limited sources. Fortunately, genetic engineering techniques offer a promising approach to produce useable amounts of spider silk variants. Starting from these recombinant spider silk proteins, a series of experiments and simulations strategies are developed to improve the recombinant spider silk proteins (RSSP) material design and fabrication with the aim of biomimicking the structure-property-function relationships of spider silks. Accordingly, in this review, the authors first introduce the structure-property-function relationship of spider silks. Then, the recent progress in the genetic synthesis of RSSPs is discussed and their related multiscale self-assembly behaviors is summarized. Finally, the authors outline works utilizing multiscale modeling to assist RSSP material design.

Progress and Opportunities in Soft Photonics and Biologically Inspired Optics

Optical components made fully or partially from reconfigurable, stimuli-responsive, soft solids or fluids-collectively referred to as soft photonics-are poised to form the platform for tunable optical devices with unprecedented functionality and performance characteristics. Currently, however, soft solid and fluid material systems still represent an underutilized class of materials in the optical engineers' toolbox. This is in part due to challenges in fabrication, integration, and structural control on the nano- and microscale associated with the application of soft components in optics. These challenges might be addressed with the help of a resourceful ally: nature. Organisms from many different phyla have evolved an impressive arsenal of light manipulation strategies that rely on the ability to generate and dynamically reconfigure hierarchically structured, complex optical material designs, often involving soft or fluid components. A comprehensive understanding of design concepts, structure formation principles, material integration, and control mechanisms employed in biological photonic systems will allow this study to challenge current paradigms in optical technology. This review provides an overview of recent developments in the fields of soft photonics and biologically inspired optics, emphasizes the ties between the two fields, and outlines future opportunities that result from advancements in soft and bioinspired photonics.

Enhancing Upconversion Fluorescence with a Natural Bio-microlens

Upconversion fluorescence has triggered extensive efforts in the past decade because of its superior physicochemical features and great potential in biomedical and biophotonic studies. However, practical applications of upconversion fluorescence are often hindered by its relatively low luminescence efficiency (<1%). Here, we employ a living yeast or human cell as a natural bio-microlens to enhance the upconversion fluorescence. The natural bio-microlens, which was stably trapped on a fiber probe, could concentrate the excitation light into a subwavelength region so that the upconversion fluorescence of core-shell NaYF₄:Yb³⁺/Tm³⁺ nanoparticles was enhanced by 2 orders of magnitude. As a benefit of the fluorescence enhancement, single-cell imaging and real-time detection of the labeled pathogenic bacteria, such as Escherichia coli and Staphylococcus aureus, were successfully achieved in the dark fields. This biocompatible, sensitive, and miniature approach could provide a promising powerful tool for biological imaging, biophotonic sensing, and single-cell analysis.

Bio-Optics and Bio-Inspired Optical Materials

Through the use of the limited materials palette, optimally designed micro- and nanostructures, and tightly regulated processes, nature demonstrates exquisite control of light-matter interactions at various length scales. In fact, control of light-matter interactions is an important element in the evolutionary arms race and has led to highly engineered optical materials and systems. In this review, we present a detailed summary of various optical effects found in nature with a particular emphasis on the materials and optical design aspects responsible for their optical functionality. Using several representative examples, we discuss various optical phenomena, including absorption and transparency, diffraction, interference, reflection and antireflection, scattering, light harvesting, wave guiding and lensing, camouflage, and bioluminescence, that are responsible for the unique optical properties of materials and structures found in nature and biology. Great strides in understanding the design principles adapted by nature have led to a tremendous progress in realizing biomimetic and bioinspired optical materials and photonic devices. We discuss the various micro- and nanofabrication techniques that have been employed for realizing advanced biomimetic optical structures.

Parameter determination and transformation for the focusing of dielectric microspheres illuminated by optical needle

By eliminating the spherical aberrations of microsphere we derived a simple but useful formula on the focusing of dielectric microsphere. On basis of this formula, not only can researchers determine the parameters of an optical microsphere system with super-resolution, but they can also perform parameter transformation. In order to facilitate the application, the principle of parameter transformation was summarized into three kinds of case listed in Table 1, which were all demonstrated numerically with concrete examples by finite-difference time-domain method. This formula will be conducive to the development of applications based on microsphere, such as photonic nano-jet lithography, microsphere nano-scope.

Combination of scanning probe technology with photonic nanojets

Light focusing through a microbead leads to the formation of a photonic nanojet functional for enhancing the spatial resolution of traditional optical systems. Despite numerous works that prove this phenomenon, a method to appropriately translate the nanojet on top of a region of interest is still missing. Here, by using advanced 3D fabrication techniques we integrated a microbead on an AFM cantilever thus realizing a system to efficiently position nanojets. This fabrication approach is robust and can be exploited in a myriad of applications, ranging from microscopy to Raman spectroscopy. We demonstrate the potential of portable nanojets by imaging different sub-wavelength structures. Thanks to the achieved portability, we were able to perform a detailed optical characterization of the resolution enhancement induced by the microbead, which sheds light into the many contradictory resolution claims present in literature. Our conclusions are strongly supported by rigorous data analysis and by numerical simulations, all in perfect agreement with experimental results.

Superlensing microscope objective lens

Conventional microscope objective lenses are diffraction limited; they cannot resolve subdiffraction features of a size smaller than 250-300 nm under white lighting condition. New innovations are required to overcome this limitation. In this paper, we propose and demonstrate a new superlensing objective lens that possesses a resolution of 100 nm, which is a two-times resolution improvement over conventional objectives. This is accomplished by integrating a conventional microscope objective lens with a superlensing microsphere lens using a customized lens adaptor. The new objective lens was successfully demonstrated for label-free super-resolution imaging of 100 nm features in engineering and biological samples, including a Blu-ray disk sample and adenoviruses. Our work opens a new door to develop a generic optical superlens, which may transform the field of optical microscopy and imaging.

Influence of the background medium on imaging performance of microsphere-assisted super-resolution microscopy

We demonstrated the importance of the refractive index of the background medium containing the microsphere in microsphere-assisted super-resolution microscopy. We performed numerical simulation and showed that the photonic nanojet properties of a microlens can be optimized by adjusting the index of the background medium surrounding it. Our simulation results, in qualitative agreement with experimental observations, demonstrated that for the same refractive index contrast between the microsphere and its surrounding medium, a high-index microsphere embedded in a medium provides sharper focusing and better imaging quality compared with its low-index counterpart working in air. Our results are of interest for various applications that require optimization of nanojet properties of microspheres, and will inform on the design of novel microparticle-embedded devices for high-resolution imaging.