1
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Saravana Karthikeyan B, Madhubala MM, Rajkumar G, Dhivya V, Kishen A, Srinivasan N, Mahalaxmi S. Physico-chemical and biological characterization of synthetic and eggshell derived nanohydroxyapatite/carboxymethyl chitosan composites for pulp-dentin tissue engineering. Int J Biol Macromol 2024; 271:132620. [PMID: 38795888 DOI: 10.1016/j.ijbiomac.2024.132620] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2024] [Revised: 05/17/2024] [Accepted: 05/22/2024] [Indexed: 05/28/2024]
Abstract
Hybrid nanohydroxyapatite/carboxymethyl chitosan (nHAp-CMC) scaffolds have garnered significant attention in the field of regenerative engineering. The current study comparatively analyzed the physicochemical and biological properties of synthetic nanohydroxyapatite (SnHA)- and eggshell-sourced nanohydroxyapatite (EnHA)- based CMC biocomposites for pulp-dentin regeneration. EnHA and CMC were synthesized through a chemical process, whereas SnHA was commercially obtained. Composite scaffolds of SnHA-CMC and EnHA-CMC (1:5 w/w) were prepared using freeze-drying method. All biomaterials were characterized by FTIR, micro-Raman, XRD, HRSEM-EDX, and TEM analyses, and their in vitro bioactivity was assessed by immersing them in simulated body fluid for 21 days. The biological properties of the composite scaffolds were evaluated by assessing cytocompatibility using MTT assay and biomineralization potential by analyzing the odontogenic gene expressions (ALP, DSPP, DMP-1 and VEGF) in human dental pulp stem cells (DPSCs) using RT-qPCR method. Characterization studies revealed that EnHA displayed higher crystallinity and superior surface morphology compared to SnHA. The composite scaffolds showed a highly interconnected porous microstructure with pore sizes ranging between 60 and 220 μm, ideal for cell seeding. All tested materials, SnHA, EnHA, and their respective composites, displayed high cytocompatibility, increased ALP activity and degree of mineralization with significant upregulation of odontogenic-related genes on DPSCs (p < 0.05). Nevertheless, the odontogenic differentiation potential of EnHA-CMC on DPSCs was significantly higher when compared to SnHA-CMC. The findings from this study highlight the potential of EnHA-CMC as a promising candidate for pulp-dentin engineering.
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Affiliation(s)
- Balasubramanian Saravana Karthikeyan
- Department of Conservative Dentistry and Endodontics, SRM Dental College, Bharathi Salai, Chennai, SRM Institute of Science and Technology, Tamil Nadu, India.
| | - Manavalan Madhana Madhubala
- Department of Conservative Dentistry and Endodontics, SRM Dental College, Bharathi Salai, Chennai, SRM Institute of Science and Technology, Tamil Nadu, India
| | - G Rajkumar
- Department of Physics, Easwari Engineering College, Ramapuram, Chennai 600 089, Tamil Nadu, India
| | - V Dhivya
- Department of Physics, Easwari Engineering College, Ramapuram, Chennai 600 089, Tamil Nadu, India
| | - Anil Kishen
- Faculty of Dentistry, University of Toronto, Ontario M5G 1X3, Canada
| | | | - Sekar Mahalaxmi
- Department of Conservative Dentistry and Endodontics, SRM Dental College, Bharathi Salai, Chennai, SRM Institute of Science and Technology, Tamil Nadu, India.
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2
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Patrick SC, Beer PD, Davis JJ. Solvent effects in anion recognition. Nat Rev Chem 2024; 8:256-276. [PMID: 38448686 DOI: 10.1038/s41570-024-00584-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 01/25/2024] [Indexed: 03/08/2024]
Abstract
Anion recognition is pertinent to a range of environmental, medicinal and industrial applications. Recent progress in the field has relied on advances in synthetic host design to afford a broad range of potent recognition motifs and novel supramolecular structures capable of effective binding both in solution and at derived molecular films. However, performance in aqueous media remains a critical challenge. Understanding the effects of bulk and local solvent on anion recognition by host scaffolds is imperative if effective and selective detection in real-world media is to be viable. This Review seeks to provide a framework within which these effects can be considered both experimentally and theoretically. We highlight proposed models for solvation effects on anion binding and discuss approaches to retain strong anion binding in highly competitive (polar) solvents. The synthetic design principles for exploiting the aforementioned solvent effects are explored.
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Affiliation(s)
| | - Paul D Beer
- Department of Chemistry, University of Oxford, Oxford, UK
| | - Jason J Davis
- Department of Chemistry, University of Oxford, Oxford, UK.
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3
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Liu M, van Kuppeveld FJM, de Haan CAM, de Vries E. Gradual adaptation of animal influenza A viruses to human-type sialic acid receptors. Curr Opin Virol 2023; 60:101314. [DOI: 10.1016/j.coviro.2023.101314] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Revised: 02/10/2023] [Accepted: 02/21/2023] [Indexed: 04/01/2023]
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4
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Tabaei SR, Fernandez-Villamarin M, Vafaei S, Rooney L, Mendes PM. Recapitulating the Lateral Organization of Membrane Receptors at the Nanoscale. ACS NANO 2023. [PMID: 37200265 DOI: 10.1021/acsnano.3c00683] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
Many cell membrane functions emerge from the lateral presentation of membrane receptors. The link between the nanoscale organization of the receptors and ligand binding remains, however, mostly unclear. In this work, we applied surface molecular imprinting and utilized the phase behavior of lipid bilayers to create platforms that recapitulate the lateral organization of membrane receptors at the nanoscale. We used liposomes decorated with amphiphilic boronic acids that commonly serve as synthetic saccharide receptors and generated three lateral modes of receptor presentation─random distribution, nanoclustering, and receptor crowding─and studied their interaction with saccharides. In comparison to liposomes with randomly dispersed receptors, surface-imprinted liposomes resulted in more than a 5-fold increase in avidity. Quantifying the binding affinity and cooperativity proved that the boost was mediated by the formation of the nanoclusters rather than a local increase in the receptor concentration. In contrast, receptor crowding, despite the presence of increased local receptor concentrations, prevented multivalent oligosaccharide binding due to steric effects. The findings demonstrate the significance of nanometric aspects of receptor presentation and generation of multivalent ligands including artificial lectins for the sensitive and specific detection of glycans.
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Affiliation(s)
- Seyed R Tabaei
- School of Chemistry and Chemical Engineering, Queen's University Belfast, Stranmillis Road, Belfast, BT9 5AG, U.K
| | | | - Setareh Vafaei
- School of Chemical Engineering, University of Birmingham, Edgbaston, Birmingham, B15 2TT, U.K
| | - Lorcan Rooney
- School of Chemistry and Chemical Engineering, Queen's University Belfast, Stranmillis Road, Belfast, BT9 5AG, U.K
| | - Paula M Mendes
- School of Chemical Engineering, University of Birmingham, Edgbaston, Birmingham, B15 2TT, U.K
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5
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Liu M, Huang LZX, Smits AA, Büll C, Narimatsu Y, van Kuppeveld FJM, Clausen H, de Haan CAM, de Vries E. Human-type sialic acid receptors contribute to avian influenza A virus binding and entry by hetero-multivalent interactions. Nat Commun 2022; 13:4054. [PMID: 35831293 PMCID: PMC9279479 DOI: 10.1038/s41467-022-31840-0] [Citation(s) in RCA: 19] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Accepted: 07/06/2022] [Indexed: 11/09/2022] Open
Abstract
Establishment of zoonotic viruses, causing pandemics like the Spanish flu and Covid-19, requires adaptation to human receptors. Pandemic influenza A viruses (IAV) that crossed the avian-human species barrier switched from binding avian-type α2-3-linked sialic acid (2-3Sia) to human-type 2-6Sia receptors. Here, we show that this specificity switch is however less dichotomous as generally assumed. Binding and entry specificity were compared using mixed synthetic glycan gradients of 2-3Sia and 2-6Sia and by employing a genetically remodeled Sia repertoire on the surface of a Sia-free cell line and on a sialoglycoprotein secreted from these cells. Expression of a range of (mixed) 2-3Sia and 2-6Sia densities shows that non-binding human-type receptors efficiently enhanced avian IAV binding and entry provided the presence of a low density of high affinity avian-type receptors, and vice versa. Considering the heterogeneity of sialoglycan receptors encountered in vivo, hetero-multivalent binding is physiologically relevant and will impact evolutionary pathways leading to host adaptation. It is believed that human Influenza HA glycoprotein attaches to alpha2-6 linked sialic acids (SA) on cells, while avian viruses bind to alpha2-3 linked sialic acids, therewith contributing to host tropism. Here, Liu et al. show that mixing low-affinity alpha2-3 SA with low amounts of high-affinity alpha2-6 SA increases binding and entry of human viruses and the converse for avian virus. This shows that receptor recognition is not as strict as currently assumed and provides evidence that heteromultivalent interactions between human/avian HA and SA contributes to host adaptation.
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Affiliation(s)
- Mengying Liu
- Virology group, Division of Infectious Diseases and Immunology, Department of Biomolecular Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
| | - Liane Z X Huang
- Virology group, Division of Infectious Diseases and Immunology, Department of Biomolecular Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
| | - Anthony A Smits
- Virology group, Division of Infectious Diseases and Immunology, Department of Biomolecular Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
| | - Christian Büll
- Center for Glycomics, Departments of Cellular and Molecular Medicine and Odontology, Faculty of Health Sciences, University of Copenhagen, Blegdamsvej 3, Copenhagen, Denmark.,Department of Biomolecular Chemistry, Institute for Molecules and Materials, Radboud University, Nijmegen, The Netherlands
| | - Yoshiki Narimatsu
- Center for Glycomics, Departments of Cellular and Molecular Medicine and Odontology, Faculty of Health Sciences, University of Copenhagen, Blegdamsvej 3, Copenhagen, Denmark
| | - Frank J M van Kuppeveld
- Virology group, Division of Infectious Diseases and Immunology, Department of Biomolecular Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands
| | - Henrik Clausen
- Center for Glycomics, Departments of Cellular and Molecular Medicine and Odontology, Faculty of Health Sciences, University of Copenhagen, Blegdamsvej 3, Copenhagen, Denmark
| | - Cornelis A M de Haan
- Virology group, Division of Infectious Diseases and Immunology, Department of Biomolecular Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands.
| | - Erik de Vries
- Virology group, Division of Infectious Diseases and Immunology, Department of Biomolecular Health Sciences, Faculty of Veterinary Medicine, Utrecht University, Utrecht, The Netherlands.
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6
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Morzy D, Bastings M. Significance of Receptor Mobility in Multivalent Binding on Lipid Membranes. Angew Chem Int Ed Engl 2022; 61:e202114167. [PMID: 34982497 PMCID: PMC9303963 DOI: 10.1002/anie.202114167] [Citation(s) in RCA: 15] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2021] [Revised: 12/07/2021] [Indexed: 01/16/2023]
Abstract
Numerous key biological processes rely on the concept of multivalency, where ligands achieve stable binding only upon engaging multiple receptors. These processes, like viral entry or immune synapse formation, occur on the diffusive cellular membrane. One crucial, yet underexplored aspect of multivalent binding is the mobility of coupled receptors. Here, we discuss the consequences of mobility in multivalent processes from four perspectives: (I) The facilitation of receptor recruitment by the multivalent ligand due to their diffusivity prior to binding. (II) The effects of receptor preassembly, which allows their local accumulation. (III) The consequences of changes in mobility upon the formation of receptor/ligand complex. (IV) The changes in the diffusivity of lipid environment surrounding engaged receptors. We demonstrate how understanding mobility is essential for fully unravelling the principles of multivalent membrane processes, leading to further development in studies on receptor interactions, and guide the design of new generations of multivalent ligands.
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Affiliation(s)
- Diana Morzy
- Programmable Biomaterials Laboratory, Institute of Materials, School of Engineering, École Polytechnique Fédérale de Lausanne, Route Cantonale, 1015, Lausanne, Switzerland
| | - Maartje Bastings
- Programmable Biomaterials Laboratory, Institute of Materials, School of Engineering, École Polytechnique Fédérale de Lausanne, Route Cantonale, 1015, Lausanne, Switzerland
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7
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Morzy D, Bastings M. Significance of Receptor Mobility in Multivalent Binding on Lipid Membranes. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202114167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
Affiliation(s)
- Diana Morzy
- Programmable Biomaterials Laboratory Institute of Materials School of Engineering École Polytechnique Fédérale de Lausanne Route Cantonale 1015 Lausanne Switzerland
| | - Maartje Bastings
- Programmable Biomaterials Laboratory Institute of Materials School of Engineering École Polytechnique Fédérale de Lausanne Route Cantonale 1015 Lausanne Switzerland
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8
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Porrelli D, Gruppuso M, Vecchies F, Marsich E, Turco G. Alginate bone scaffolds coated with a bioactive lactose modified chitosan for human dental pulp stem cells proliferation and differentiation. Carbohydr Polym 2021; 273:118610. [PMID: 34561009 DOI: 10.1016/j.carbpol.2021.118610] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/27/2021] [Revised: 06/21/2021] [Accepted: 08/20/2021] [Indexed: 12/27/2022]
Abstract
Bioactive and biodegradable porous scaffolds can hasten the healing of bone defects; moreover, patient stem cells seeded onto scaffolds can enhance the osteoinductive and osteoconductive properties of these biomaterials. In this work, porous alginate/hydroxyapatite scaffolds were functionalized with a bioactive coating of a lactose-modified chitosan (CTL). The highly interconnected porous structure of the scaffold was homogeneously coated with CTL. The scaffolds showed remarkable stability up to 60 days of aging. Human Dental Pulp Stem Cells (hDPSCs) cultured in the presence of CTL diluted in culture medium, showed a slight and negligible increase in terms of proliferation rate; on the contrary, an effect on osteogenic differentiation of the cells was observed as a significant increase in alkaline phosphatase activity. hDPSCs showed higher cell adhesion on CTL-coated scaffolds than on uncoated ones. CTL coating did not affect cell proliferation, but stimulated cell differentiation as shown by alkaline phosphatase activity analysis.
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Affiliation(s)
- Davide Porrelli
- Department of Medicine, Surgery and Health Sciences, University of Trieste, Piazza dell'Ospitale 1, 34125 Trieste, Italy.
| | - Martina Gruppuso
- Department of Medicine, Surgery and Health Sciences, University of Trieste, Piazza dell'Ospitale 1, 34125 Trieste, Italy.
| | - Federica Vecchies
- Department of Life Sciences, University of Trieste, Via Licio Giorgieri 5, 34127 Trieste, Italy.
| | - Eleonora Marsich
- Department of Medicine, Surgery and Health Sciences, University of Trieste, Via Licio Giorgieri 5, 34129 Trieste, Italy.
| | - Gianluca Turco
- Department of Medicine, Surgery and Health Sciences, University of Trieste, Piazza dell'Ospitale 1, 34125 Trieste, Italy.
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9
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Kocsis I, Ding Y, Williams NH, Hunter CA. Transmembrane signal transduction by cofactor transport. Chem Sci 2021; 12:12377-12382. [PMID: 34603667 PMCID: PMC8480319 DOI: 10.1039/d1sc03910e] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2021] [Accepted: 08/17/2021] [Indexed: 11/30/2022] Open
Abstract
Information processing and cell signalling in biological systems relies on passing chemical signals across lipid bilayer membranes, but examples of synthetic systems that can achieve this process are rare. A synthetic transducer has been developed that triggers catalytic hydrolysis of an ester substrate inside lipid vesicles in response to addition of metal ions to the external vesicle solution. The output signal generated in the internal compartment of the vesicles is produced by binding of a metal ion cofactor to a head group on the transducer to form a catalytically competent complex. The mechanism of signal transduction is based on transport of the metal ion cofactor across the bilayer by the transducer, and the system can be reversibly switched between on and off states by adding cadmium(ii) and ethylene diamine tetracarboxylic acid input signals respectively. The transducer is also equipped with a hydrazide moiety, which allows modulation of activity through covalent conjugation with aldehydes. Conjugation with a sugar derivative abolished activity, because the resulting hydrazone is too polar to cross the bilayer, whereas conjugation with a pyridine derivative increased activity. Coupling transport with catalysis provides a straightforward mechanism for generating complex systems using simple components. Synthetic transducers transport externally added metal ion cofactors across the lipid bilayer membrane of vesicles to trigger catalysis of ester hydrolysis in the inner compartment. Signal transduction activity is modulated by hydrazone formation.![]()
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Affiliation(s)
- Istvan Kocsis
- Department of Chemistry, University of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | - Yudi Ding
- Department of Chemistry, University of Cambridge Lensfield Road Cambridge CB2 1EW UK
| | | | - Christopher A Hunter
- Department of Chemistry, University of Cambridge Lensfield Road Cambridge CB2 1EW UK
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10
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Bickerton LE, Johnson TG, Kerckhoffs A, Langton MJ. Supramolecular chemistry in lipid bilayer membranes. Chem Sci 2021; 12:11252-11274. [PMID: 34567493 PMCID: PMC8409493 DOI: 10.1039/d1sc03545b] [Citation(s) in RCA: 33] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2021] [Accepted: 07/26/2021] [Indexed: 01/03/2023] Open
Abstract
Lipid bilayer membranes form compartments requisite for life. Interfacing supramolecular systems, including receptors, catalysts, signal transducers and ion transporters, enables the function of the membrane to be controlled in artificial and living cellular compartments. In this perspective, we take stock of the current state of the art of this rapidly expanding field, and discuss prospects for the future in both fundamental science and applications in biology and medicine.
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Affiliation(s)
- Laura E Bickerton
- Department of Chemistry, University of Oxford Chemistry Research Laboratory 12 Mansfield Road Oxford OX1 3TA UK
| | - Toby G Johnson
- Department of Chemistry, University of Oxford Chemistry Research Laboratory 12 Mansfield Road Oxford OX1 3TA UK
| | - Aidan Kerckhoffs
- Department of Chemistry, University of Oxford Chemistry Research Laboratory 12 Mansfield Road Oxford OX1 3TA UK
| | - Matthew J Langton
- Department of Chemistry, University of Oxford Chemistry Research Laboratory 12 Mansfield Road Oxford OX1 3TA UK
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11
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Grochmal A, Woods B, Milanesi L, Perez-Soto M, Tomas S. How the biomimetic assembly of membrane receptors into multivalent domains is regulated by a small ligand. Chem Sci 2021; 12:7800-7808. [PMID: 34168834 PMCID: PMC8188472 DOI: 10.1039/d1sc01598b] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
In living cells, communication requires the action of membrane receptors that are activated following very small environmental changes. A binary all-or-nothing behavior follows, making the organism extremely efficient at responding to specific stimuli. Using a minimal system composed of lipid vesicles, chemical models of a membrane receptor and their ligands, we show that bio-mimetic ON/OFF assembly of high avidity, multivalent domains is triggered by small temperature changes. Moreover, the intensity of the ON signal at the onset of the switch is modulated by the presence of small, weakly binding divalent ligands, reminiscent of the action of primary messengers in biological systems. Based on the analysis of spectroscopic data, we develop a mathematical model that rigorously describes the temperature-dependent switching of the membrane receptor assembly and ligand binding. From this we derive an equation that predicts the intensity of the modulation of the ON signal by the ligand-messenger as a function of the pairwise binding parameters, the number of binding sites that it features and the concentration. The behavior of our system, and the model derived, highlight the usefulness of weakly binding ligands in the regulation of membrane receptors and the pitfalls inherent to their binding promiscuity, such as non-specific binding to the membrane. Our model, and the equations derived from it, offer a valuable tool for the study of membrane receptors in both biological and biomimetic settings. The latter can be exploited to program membrane receptor avidity on sensing vesicles, create hierarchical protocell tissues or develop highly specific drug delivery vehicles.
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Affiliation(s)
- Anna Grochmal
- Department of Biological Sciences, Institute of Structural and Molecular Biology, School of Science, Birkbeck University of London Malet Street London WC1E 7HX UK
| | - Ben Woods
- Department of Biological Sciences, Institute of Structural and Molecular Biology, School of Science, Birkbeck University of London Malet Street London WC1E 7HX UK
| | - Lilia Milanesi
- Department of Biological Sciences, Institute of Structural and Molecular Biology, School of Science, Birkbeck University of London Malet Street London WC1E 7HX UK
| | - Manuel Perez-Soto
- Department of Biological Sciences, Institute of Structural and Molecular Biology, School of Science, Birkbeck University of London Malet Street London WC1E 7HX UK
| | - Salvador Tomas
- Department of Biological Sciences, Institute of Structural and Molecular Biology, School of Science, Birkbeck University of London Malet Street London WC1E 7HX UK
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12
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Yeh CT, Obendorf L, Parmeggiani F. Elfin UI: A Graphical Interface for Protein Design With Modular Building Blocks. Front Bioeng Biotechnol 2020; 8:568318. [PMID: 33195130 PMCID: PMC7644802 DOI: 10.3389/fbioe.2020.568318] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2020] [Accepted: 10/02/2020] [Indexed: 02/01/2023] Open
Abstract
Molecular models have enabled understanding of biological structures and functions and allowed design of novel macro-molecules. Graphical user interfaces (GUIs) in molecular modeling are generally focused on atomic representations, but, especially for proteins, do not usually address designs of complex and large architectures, from nanometers to microns. Therefore, we have developed Elfin UI as a Blender add-on for the interactive design of large protein architectures with custom shapes. Elfin UI relies on compatible building blocks to design single- and multiple-chain protein structures. The software can be used: (1) as an interactive environment to explore building blocks combinations; and (2) as a computer aided design (CAD) tool to define target shapes that guide automated design. Elfin UI allows users to rapidly build new protein shapes, without the need to focus on amino acid sequence, and aims to make design of proteins and protein-based materials intuitive and accessible to researchers and members of the general public with limited expertise in protein engineering.
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Affiliation(s)
- Chun-Ting Yeh
- School of Chemistry and School of Biochemistry, University of Bristol, Bristol, United Kingdom
| | - Leon Obendorf
- School of Chemistry and School of Biochemistry, University of Bristol, Bristol, United Kingdom.,Institute of Chemistry and Biochemistry, Freie Universität Berlin, Berlin, Germany
| | - Fabio Parmeggiani
- School of Chemistry and School of Biochemistry, University of Bristol, Bristol, United Kingdom.,Bristol Biodesign Institute and BrisSynBio, a BBSRC/EPSRC Synthetic Biology Research Centre, University of Bristol, Bristol, United Kingdom
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13
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Di Iorio D, Lu Y, Meulman J, Huskens J. Recruitment of receptors at supported lipid bilayers promoted by the multivalent binding of ligand-modified unilamellar vesicles. Chem Sci 2020; 11:3307-3315. [PMID: 34122838 PMCID: PMC8152591 DOI: 10.1039/d0sc00518e] [Citation(s) in RCA: 21] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022] Open
Abstract
The development of model systems that mimic biological interactions and allow the control of both receptor and ligand densities, is essential for a better understanding of biomolecular processes, such as the recruitment of receptors at interfaces, at the molecular level. Here we report a model system based on supported lipid bilayers (SLBs) for the investigation of the clustering of receptors at their interface. Biotinylated SLBs, used as cell membrane mimics, were functionalized with streptavidin (SAv), used here as receptor. Subsequently, biotinylated small (SUVs) and giant (GUVs) unilamellar vesicles were bound to the SAv-functionalized SLBs by multivalent interactions and found to induce the recruitment of both SAv on the SLB surface and the biotin moieties in the vesicles. The recruitment of receptors was investigated with quartz crystal microbalance with dissipation monitoring (QCM-D), which allowed the identification of the biotin and SAv densities necessary to obtain receptor recruitment. At approx. 0.6% of biotin in the vesicles, a transition between dense and low vesicle packing was observed, which coincided with the transitions between recruitment in the vesicles vs. recruitment in the SLB and between full and partial use of the biotin moieties in the vesicle. Direct optical visualization of the clustering at the interface of individual GUVs with the SLB platform was achieved with fluorescence microscopy, showing recruitment of SAv at the contact area as well as the deformation of the vesicles upon binding. Different vesicle binding regimes were observed for lower and higher biotin densities in the vesicles and at the SLBs. A more quantitative analysis of the molecular parameters implied in the interaction, indicated that approx. 10% of the vesicle area constitutes the contact area. Moreover, the SUV binding and recruitment appeared to be fast on the analysis time scale, whereas the binding of GUVs is slower due to the larger SLB area over which SAv recruitment needs to occur. The mechanisms revealed in this study may provide insight in biological processes in which recruitment occurs. The development of model systems that mimic biological interactions and allow the control of both receptor and ligand densities, is essential for a molecular understanding of biomolecular processes, such as the recruitment of receptors at interfaces.![]()
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Affiliation(s)
- Daniele Di Iorio
- Molecular Nanofabrication Group, MESA+ Institute for Nanotechnology, Faculty of Science and Technology, University of Twente P.O. Box 217 Enschede 7500 AE The Netherlands
| | - Yao Lu
- Molecular Nanofabrication Group, MESA+ Institute for Nanotechnology, Faculty of Science and Technology, University of Twente P.O. Box 217 Enschede 7500 AE The Netherlands
| | - Joris Meulman
- Molecular Nanofabrication Group, MESA+ Institute for Nanotechnology, Faculty of Science and Technology, University of Twente P.O. Box 217 Enschede 7500 AE The Netherlands
| | - Jurriaan Huskens
- Molecular Nanofabrication Group, MESA+ Institute for Nanotechnology, Faculty of Science and Technology, University of Twente P.O. Box 217 Enschede 7500 AE The Netherlands
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14
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Shamova EV, Gorudko IV, Grigorieva DV, Sokolov AV, Kokhan AU, Melnikova GB, Yafremau NA, Gusev SA, Sveshnikova AN, Vasilyev VB, Cherenkevich SN, Panasenko OM. The effect of myeloperoxidase isoforms on biophysical properties of red blood cells. Mol Cell Biochem 2019; 464:119-130. [PMID: 31754972 DOI: 10.1007/s11010-019-03654-0] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/22/2019] [Accepted: 11/08/2019] [Indexed: 12/18/2022]
Abstract
Myeloperoxidase (MPO), an oxidant-producing enzyme, stored in azurophilic granules of neutrophils has been recently shown to influence red blood cell (RBC) deformability leading to abnormalities in blood microcirculation. Native MPO is a homodimer, consisting of two identical protomers (monomeric MPO) connected by a single disulfide bond but in inflammatory foci as a result of disulfide cleavage monomeric MPO (hemi-MPO) can also be produced. This study investigated if two MPO isoforms have distinct effects on biophysical properties of RBCs. We have found that hemi-MPO, as well as the dimeric form, bind to the glycophorins A/B and band 3 protein on RBC's plasma membrane, that lead to reduced cell resistance to osmotic and acidic hemolysis, reduction in cell elasticity, significant changes in cell volume, morphology, and the conductance of RBC plasma membrane ion channels. Furthermore, we have shown for the first time that both dimeric and hemi-MPO lead to phosphatidylserine (PS) exposure on the outer leaflet of RBC membrane. However, the effects of hemi-MPO on the structural and functional properties of RBCs were lower compared to those of dimeric MPO. These findings suggest that the ability of MPO protein to influence RBC's biophysical properties depends on its conformation (dimeric or monomeric isoform). It is intriguing to speculate that hemi-MPO appearance in blood during inflammation can serve as a regulatory mechanism addressed to reduce abnormalities on RBC response, induced by dimeric MPO.
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Affiliation(s)
| | | | | | - Alexey V Sokolov
- FSBSI "Institute of Experimental Medicine", St. Petersburg, Russia
- Saint-Petersburg State University, St. Petersburg, Russia
- Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia
| | | | - Galina B Melnikova
- A.V. Luikov Heat and Mass Transfer Institute of the National Academy of Sciences of Belarus, Minsk, Belarus
| | - Nikolai A Yafremau
- State Institution "N.N. Alexandrov Republican Scientific and Practical Center of Oncology and Medical Radiology", Minsk, Belarus
| | - Sergey A Gusev
- Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia
| | | | - Vadim B Vasilyev
- FSBSI "Institute of Experimental Medicine", St. Petersburg, Russia
- Saint-Petersburg State University, St. Petersburg, Russia
| | | | - Oleg M Panasenko
- Federal Research and Clinical Center of Physical-Chemical Medicine of Federal Medical Biological Agency, Moscow, Russia
- Pirogov Russian National Research Medical University, Moscow, Russia
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15
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Maiti B, Dey N, Bhattacharya S. Engaging Dynamic Surfactant Assemblies in Improving Metal Ion Sensitivity of a 1,4,7-Triazacyclononane-Based Receptor: Differential Optical Response for Cysteine and Histidine. ACS APPLIED BIO MATERIALS 2019; 2:2365-2373. [DOI: 10.1021/acsabm.9b00083] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Bappa Maiti
- Department of Organic Chemistry, Indian Institute of Science, Bangalore 560012, India
- School of Applied & Interdisciplinary Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
| | - Nilanjan Dey
- Department of Organic Chemistry, Indian Institute of Science, Bangalore 560012, India
| | - Santanu Bhattacharya
- Department of Organic Chemistry, Indian Institute of Science, Bangalore 560012, India
- School of Applied & Interdisciplinary Sciences, Indian Association for the Cultivation of Science, Jadavpur, Kolkata 700032, India
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16
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Dubacheva GV, Curk T, Frenkel D, Richter RP. Multivalent Recognition at Fluid Surfaces: The Interplay of Receptor Clustering and Superselectivity. J Am Chem Soc 2019; 141:2577-2588. [DOI: 10.1021/jacs.8b12553] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Galina V. Dubacheva
- Biosurfaces Lab, CIC biomaGUNE, Paseo Miramon 182, 20014 Donostia - San Sebastian, Spain
- PPSM CNRS UMR8531, ENS Cachan, Université Paris-Saclay, 61 Avenue du Président Wilson, 94235 Cachan, France
| | - Tine Curk
- Beijing National Laboratory for Condensed Matter Physics & CAS Key Laboratory of Soft Matter Physics, Institute of Physics, Chinese Academy of Sciences, Beijing 100190, People’s Republic of China
- Faculty of Chemistry and Chemical Engineering, University of Maribor, 2000 Maribor, Slovenia
| | - Daan Frenkel
- Department of Chemistry, University of Cambridge, Lensfield Road, Cambridge, CB2 1EW, United Kingdom
| | - Ralf P. Richter
- Biosurfaces Lab, CIC biomaGUNE, Paseo Miramon 182, 20014 Donostia - San Sebastian, Spain
- School of Biomedical Sciences, Faculty of Biological Sciences, School of Physics and Astronomy, Faculty of Mathematics and Physical Sciences, and Astbury Centre for Structural Molecular Biology, University of Leeds, Leeds, LS2 9JT, United Kingdom
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17
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Xiao L, Parchur AK, Gilbertson TA, Zhou A. SERS-fluorescence bimodal nanoprobes for in vitro imaging of fatty acid responsive receptor GPR120. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2017; 10:22-29. [PMID: 29449902 PMCID: PMC5808993 DOI: 10.1039/c7ay02039b] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/07/2023]
Abstract
G-protein-coupled receptor 120 (GPR120), as a member of the rhodopsin family of G-protein-coupled receptors, has been shown to function as a sensor for dietary fat in the gustatory and digestive systems. Its specific role in the chemoreception of fatty acids, which is thought to be crucial in understanding the mechanism surrounding the control of fat intake and, accordingly, in the treatment of obesity, remains unclear. Here we report a novel surface-enhanced Raman spectroscopy (SERS)-fluorescence bimodal microscopic technique for detection and imaging of GPR120 in single living cells. CaMoO4:Eu3+@AuNR hybrid nanoparticles are synthesized and characterized as imaging probes. Biocompatibility and imaging capability of the probes are investigated using a model HEK293 cell line with an inducible GPR120 gene transfection. Cellular distribution of GPR120 is visualized by single-cell SERS and fluorescence imaging. A dose-dependent GPR120 response to linoleic acid treatment is revealed by SERS.
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Affiliation(s)
- Lifu Xiao
- Department of Biological Engineering, Utah State University, Logan, Utah 84322-4105, U.S.A
- Department of Chemistry and Biochemistry, University of Notre Dame, Notre Dame, Indiana, 46556, USA
| | - Abdul K. Parchur
- Department of Biological Engineering, Utah State University, Logan, Utah 84322-4105, U.S.A
| | | | - Anhong Zhou
- Department of Biological Engineering, Utah State University, Logan, Utah 84322-4105, U.S.A
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18
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Kinnear C, Moore TL, Rodriguez-Lorenzo L, Rothen-Rutishauser B, Petri-Fink A. Form Follows Function: Nanoparticle Shape and Its Implications for Nanomedicine. Chem Rev 2017; 117:11476-11521. [DOI: 10.1021/acs.chemrev.7b00194] [Citation(s) in RCA: 342] [Impact Index Per Article: 48.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Affiliation(s)
- Calum Kinnear
- Bio21 Institute & School of Chemistry, University of Melbourne, Parkville 3010, Australia
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19
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Angelov B, Angelova A. Nanoscale clustering of the neurotrophin receptor TrkB revealed by super-resolution STED microscopy. NANOSCALE 2017; 9:9797-9804. [PMID: 28682396 DOI: 10.1039/c7nr03454g] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The nanoscale organization of the tropomyosin-related kinase receptor type B (TrkB), a promising therapeutic target for severe neurodegenerative and psychiatric disorders, is examined by stimulated emission depletion (STED) microscopy using the deconvoluted gated STED option. The performed immunofluorescence nanoscopic subdiffraction imaging of the membrane receptor localization reveals that clusters of oligomeric TrkB states and randomly organized nanodomains are formed in the membranes of differentiated human neuroblastoma SH-SY5Y cells, which are studied as an in vitro model of neurodegeneration. Despite that the monomeric (isolated) states of the receptor cannot be distinguished from its dimeric forms in such images, TrkB receptor dimers (or couple of individual monomers) are visualized at super-resolution as single pixels in the magnified Huygens-deconvoluted gated STED images. The clusters of higher-order TrkB oligomers are of dynamic nature rather than of a fixed stoichiometry. The propensity for membrane protein clustering as well as the dissociation of the TrkB receptors nanodomains can be modulated by neurotherapeutic formulations containing ω-3 polyunsaturated docosahexaenoic acid (DHA). Nanomolar concentrations of DHA change the receptor topology and lead to disruption of the cluster phases. This result is of therapeutic importance for TrkB receptor availability upon ligand binding as DHA favours the mobility and the dynamic distribution of the protein populations in the cell membranes.
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Affiliation(s)
- Borislav Angelov
- Institute of Physics, ELI Beamlines, Academy of Sciences of the Czech Republic, Na Slovance 2, CZ-18221 Prague, Czech Republic
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20
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Heo JY, Kang SH, Kim YH, You S, Jin KS, Kim SW, Jung HY, Jung KO, Lee CH, Kim MJ, Sung SE, Kim B, Choi IS, Youn H, Chung JK, Kim SK, Kim Y. Toward redesigning the PEG surface of nanocarriers for tumor targeting: impact of inner functionalities on size, charge, multivalent binding, and biodistribution. Chem Sci 2017; 8:5186-5195. [PMID: 28970905 PMCID: PMC5618790 DOI: 10.1039/c6sc05640g] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2016] [Accepted: 04/17/2017] [Indexed: 01/15/2023] Open
Abstract
Achieving accurate and efficacious tumor targeting with minimal off-target effects is of paramount importance in designing diagnostic and therapeutic agents for cancer. In this respect, nanocarriers have gained enormous popularity because of their attainable multifunctional features, as well as tumor-targeting potential by extravasation. However, once administered into the bloodstream, nanocarriers face various in vivo obstacles that may significantly impair their performance needed for clinical translation. Herein, we demonstrate a strategy to enhance tumor-targeting efficiency by embedding functionalities in the interior region of partially PEGylated nanocarriers (ca. 10 nm in diameter), intended for active or passive targeting. The cooperative impact of these topologically inner functional groups (IFGs) was marked: enhancements of >100-fold in IC50in vitro (e.g., a high-avidity ligand with cationic IFGs) and >2-fold in tumor accumulation at 2 h post-injection in vivo (e.g., a high-avidity ligand with anionic IFGs), both against the fully PEGylated counterpart. Analogous to allosteric modulators, properly employed IFGs may substantially improve the process of effectively directing nanocarriers to tumors, which is otherwise solely dependent on avidity or extravasation.
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Affiliation(s)
- Ju Young Heo
- Korea Research Institute of Bioscience and Biotechnology , Daejeon , 34141 , Korea .
- Department of Chemistry , Korea Advanced Institute of Science and Technology , Daejeon , 34141 , Korea
| | - Se Hun Kang
- Molecular Imaging and Therapy Branch , National Cancer Center , Goyang , 10408 , Korea .
| | - Young-Hwa Kim
- Department of Biomedical Sciences , Seoul National University College of Medicine , Seoul , 03080 , Korea .
- Cancer Research Institute , Seoul National University College of Medicine , Seoul , 03080 , Korea
| | - Suyeon You
- Korea Research Institute of Bioscience and Biotechnology , Daejeon , 34141 , Korea .
| | - Kyeong Sik Jin
- Pohang Accelerator Laboratory , Pohang University of Science and Technology , Pohang , 37673 , Korea
| | - Seung Won Kim
- Molecular Imaging and Therapy Branch , National Cancer Center , Goyang , 10408 , Korea .
| | - Hye-Youn Jung
- Korea Research Institute of Bioscience and Biotechnology , Daejeon , 34141 , Korea .
| | - Kyung Oh Jung
- Department of Biomedical Sciences , Seoul National University College of Medicine , Seoul , 03080 , Korea .
- Cancer Research Institute , Seoul National University College of Medicine , Seoul , 03080 , Korea
| | - Chul-Hee Lee
- Department of Biomedical Sciences , Seoul National University College of Medicine , Seoul , 03080 , Korea .
- Cancer Research Institute , Seoul National University College of Medicine , Seoul , 03080 , Korea
| | - Mi Jung Kim
- Korea Research Institute of Bioscience and Biotechnology , Daejeon , 34141 , Korea .
| | - Soo-Eun Sung
- Korea Research Institute of Bioscience and Biotechnology , Daejeon , 34141 , Korea .
| | - Boram Kim
- Korea Research Institute of Bioscience and Biotechnology , Daejeon , 34141 , Korea .
| | - Insung S Choi
- Department of Chemistry , Korea Advanced Institute of Science and Technology , Daejeon , 34141 , Korea
| | - Hyewon Youn
- Department of Biomedical Sciences , Seoul National University College of Medicine , Seoul , 03080 , Korea .
- Cancer Research Institute , Seoul National University College of Medicine , Seoul , 03080 , Korea
- Department of Nuclear Medicine , Seoul National University Hospital , Seoul , 03080 , Korea
| | - June-Key Chung
- Department of Biomedical Sciences , Seoul National University College of Medicine , Seoul , 03080 , Korea .
- Cancer Research Institute , Seoul National University College of Medicine , Seoul , 03080 , Korea
- Department of Nuclear Medicine , Seoul National University Hospital , Seoul , 03080 , Korea
| | - Seok-Ki Kim
- Molecular Imaging and Therapy Branch , National Cancer Center , Goyang , 10408 , Korea .
| | - Yoonkyung Kim
- Korea Research Institute of Bioscience and Biotechnology , Daejeon , 34141 , Korea .
- Korea University of Science and Technology (UST) , Daejeon , 34113 , Korea
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21
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Kinnear C, Rodriguez-Lorenzo L, Clift MJD, Goris B, Bals S, Rothen-Rutishauser B, Petri-Fink A. Decoupling the shape parameter to assess gold nanorod uptake by mammalian cells. NANOSCALE 2016; 8:16416-16426. [PMID: 27714053 DOI: 10.1039/c6nr03543d] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/20/2023]
Abstract
The impact of nanoparticles (NPs) upon biological systems can be fundamentally associated with their physicochemical parameters. A further often-stated tenet is the importance of NP shape on rates of endocytosis. However, given the convoluted parameters concerning the NP-cell interaction, it is experimentally challenging to attribute any findings to shape alone. Herein we demonstrate that shape, below a certain limit, which is specific to nanomedicine, is not important for the endocytosis of spherocylinders by either epithelial or macrophage cells in vitro. Through a systematic approach, we reshaped a single batch of gold nanorods into different aspect ratios resulting in near-spheres and studied their cytotoxicity, (pro-)inflammatory status, and endocytosis/exocytosis. It was found that on a length scale of ∼10-90 nm and at aspect ratios less than 5, NP shape has little impact upon their entry into either macrophages or epithelial cells. Conversely, nanorods with an aspect ratio above 5 were preferentially endocytosed by epithelial cells, whereas there was a lack of shape dependent uptake following exposure to macrophages in vitro. These findings have implications both in the understanding of nanoparticle reshaping mechanisms, as well as in the future rational design of nanomaterials for biomedical applications.
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Affiliation(s)
- C Kinnear
- Adolphe Merkle Institute, University of Fribourg, Fribourg 1700, Switzerland
| | - L Rodriguez-Lorenzo
- Adolphe Merkle Institute, University of Fribourg, Fribourg 1700, Switzerland
| | - M J D Clift
- Adolphe Merkle Institute, University of Fribourg, Fribourg 1700, Switzerland
| | - B Goris
- Electron Microscopy for Materials Research (EMAT), University of Antwerp, Antwerp 2020, Belgium
| | - S Bals
- Electron Microscopy for Materials Research (EMAT), University of Antwerp, Antwerp 2020, Belgium
| | | | - A Petri-Fink
- Adolphe Merkle Institute, University of Fribourg, Fribourg 1700, Switzerland and Chemistry Department, University of Fribourg, Fribourg 1700, Switzerland.
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22
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Lopez-Fontal E, Milanesi L, Tomas S. Multivalence cooperativity leading to "all-or-nothing" assembly: the case of nucleation-growth in supramolecular polymers. Chem Sci 2016; 7:4468-4475. [PMID: 30009001 PMCID: PMC6014373 DOI: 10.1039/c6sc00520a] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2016] [Accepted: 03/18/2016] [Indexed: 12/24/2022] Open
Abstract
All-or-nothing molecular assembly events, essential for the efficient regulation of living systems at the molecular level, are emerging properties of complex chemical systems that are largely attributed to the cooperativity of weak interactions. The link between the self-assembly and the interactions responsible for the assembly is however often poorly defined. In this work we demonstrate how the chelate effect (multivalence cooperativity) can play a central role in the regulation of the all-or-nothing assembly of structures (supramolecular polymers here), even if the building blocks are not multivalent. We have studied the formation of double-stranded supramolecular polymers formed from Co-metalloporphyrin and bi-pyridine building blocks. Their cooperative nucleation-elongation assembly can be summarized as a thermodynamic cycle, where the monomer weakly oligomerizes linearly or weakly dimerizes laterally. But thanks to the chelate effect, the lateral dimer readily oligomerizes linearly and the oligomer readily dimerizes laterally, leading to long double stranded polymers. A model based on this simple thermodynamic cycle can be applied to the assembly of polymers with any number of strands, and allows for the determination of the length of the polymer and the all-or-nothing switching concentration from the pairwise binding constants. The model, which is consistent with the behaviour of supramolecular polymers such as microtubules and gelators, clearly shows that all-or-nothing assembly is triggered by a change in the mode of assembly, from non-multivalent to multivalent, when a critical concentration is reached. We believe this model is applicable to many molecular assembly processes, ranging from the formation of cell-cell focal adhesion points to crystallization.
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Affiliation(s)
- Elkin Lopez-Fontal
- Institute of Structural and Molecular Biology and Department of Biological Sciences , School of Science , Birkbeck University of London , Malet Street , London WC1E 7HX , UK .
| | - Lilia Milanesi
- School of Biological and Chemical Sciences , Queen Mary University of London , Mile End Road , London E1 4NS , UK
| | - Salvador Tomas
- Institute of Structural and Molecular Biology and Department of Biological Sciences , School of Science , Birkbeck University of London , Malet Street , London WC1E 7HX , UK .
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23
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Motloch P, Hunter C. Thermodynamic Effective Molarities for Supramolecular Complexes. ADVANCES IN PHYSICAL ORGANIC CHEMISTRY 2016. [DOI: 10.1016/bs.apoc.2016.07.001] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
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24
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One-pot system for synthesis, assembly, and display of functional single-span membrane proteins on oil-water interfaces. Proc Natl Acad Sci U S A 2015; 113:608-13. [PMID: 26721399 DOI: 10.1073/pnas.1504992113] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Single-span membrane proteins (ssMPs) represent approximately one-half of all membrane proteins and play important roles in cellular communications. However, like all membrane proteins, ssMPs are prone to misfolding and aggregation because of the hydrophobicity of transmembrane helices, making them difficult to study using common aqueous solution-based approaches. Detergents and membrane mimetics can solubilize membrane proteins but do not always result in proper folding and functionality. Here, we use cell-free protein synthesis in the presence of oil drops to create a one-pot system for the synthesis, assembly, and display of functional ssMPs. Our studies suggest that oil drops prevent aggregation of some in vitro-synthesized ssMPs by allowing these ssMPs to localize on oil surfaces. We speculate that oil drops may provide a hydrophobic interior for cotranslational insertion of the transmembrane helices and a fluidic surface for proper assembly and display of the ectodomains. These functionalized oil drop surfaces could mimic cell surfaces and allow ssMPs to interact with cell surface receptors under an environment closest to cell-cell communication. Using this approach, we showed that apoptosis-inducing human transmembrane proteins, FasL and TRAIL, synthesized and displayed on oil drops induce apoptosis of cultured tumor cells. In addition, we take advantage of hydrophobic interactions of transmembrane helices to manipulate the assembly of ssMPs and create artificial clusters on oil drop surfaces. Thus, by coupling protein synthesis with self-assembly at the water-oil interface, we create a platform that can use recombinant ssMPs to communicate with cells.
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25
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Blaszczyk M, Harmer NJ, Chirgadze DY, Ascher DB, Blundell TL. Achieving high signal-to-noise in cell regulatory systems: Spatial organization of multiprotein transmembrane assemblies of FGFR and MET receptors. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2015; 118:103-11. [PMID: 25957048 PMCID: PMC4832006 DOI: 10.1016/j.pbiomolbio.2015.04.007] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 03/13/2015] [Revised: 04/23/2015] [Accepted: 04/24/2015] [Indexed: 01/12/2023]
Abstract
How is information communicated both within and between cells of living systems with high signal to noise? We discuss transmembrane signaling models involving two receptor tyrosine kinases: the fibroblast growth factor receptor (FGFR) and the MET receptor. We suggest that simple dimerization models might occur opportunistically giving rise to noise but cooperative clustering of the receptor tyrosine kinases observed in these systems is likely to be important for signal transduction. We propose that this may be a more general prerequisite for high signal to noise in transmembrane receptor signaling.
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Affiliation(s)
- Michal Blaszczyk
- Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK
| | - Nicholas J Harmer
- The Henry Wellcome Building for Biocatalysis, University of Exeter, Stocker Road, Exeter EX4 4QD, UK
| | - Dimitri Y Chirgadze
- Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK
| | - David B Ascher
- Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK.
| | - Tom L Blundell
- Department of Biochemistry, University of Cambridge, Tennis Court Road, Cambridge CB2 1GA, UK.
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26
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Tripathi A, Vana PG, Chavan TS, Brueggemann LI, Byron KL, Tarasova NI, Volkman BF, Gaponenko V, Majetschak M. Heteromerization of chemokine (C-X-C motif) receptor 4 with α1A/B-adrenergic receptors controls α1-adrenergic receptor function. Proc Natl Acad Sci U S A 2015; 112:E1659-68. [PMID: 25775528 PMCID: PMC4386352 DOI: 10.1073/pnas.1417564112] [Citation(s) in RCA: 49] [Impact Index Per Article: 5.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023] Open
Abstract
Recent evidence suggests that chemokine (C-X-C motif) receptor 4 (CXCR4) contributes to the regulation of blood pressure through interactions with α1-adrenergic receptors (ARs) in vascular smooth muscle. The underlying molecular mechanisms, however, are unknown. Using proximity ligation assays to visualize single-molecule interactions, we detected that α1A/B-ARs associate with CXCR4 on the cell surface of rat and human vascular smooth muscle cells (VSMC). Furthermore, α1A/B-AR could be coimmunoprecipitated with CXCR4 in a HeLa expression system and in human VSMC. A peptide derived from the second transmembrane helix of CXCR4 induced chemical shift changes in the NMR spectrum of CXCR4 in membranes, disturbed the association between α1A/B-AR and CXCR4, and inhibited Ca(2+) mobilization, myosin light chain (MLC) 2 phosphorylation, and contraction of VSMC upon α1-AR activation. CXCR4 silencing reduced α1A/B-AR:CXCR4 heteromeric complexes in VSMC and abolished phenylephrine-induced Ca(2+) fluxes and MLC2 phosphorylation. Treatment of rats with CXCR4 agonists (CXCL12, ubiquitin) reduced the EC50 of the phenylephrine-induced blood pressure response three- to fourfold. These observations suggest that disruption of the quaternary structure of α1A/B-AR:CXCR4 heteromeric complexes by targeting transmembrane helix 2 of CXCR4 and depletion of the heteromeric receptor complexes by CXCR4 knockdown inhibit α1-AR-mediated function in VSMC and that activation of CXCR4 enhances the potency of α1-AR agonists. Our findings extend the current understanding of the molecular mechanisms regulating α1-AR and provide an example of the importance of G protein-coupled receptor (GPCR) heteromerization for GPCR function. Compounds targeting the α1A/B-AR:CXCR4 interaction could provide an alternative pharmacological approach to modulate blood pressure.
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Affiliation(s)
- Abhishek Tripathi
- Burn and Shock Trauma Research Institute, Department of Surgery, Loyola University Chicago Stritch School of Medicine, Maywood, IL 60153
| | - P Geoff Vana
- Burn and Shock Trauma Research Institute, Department of Surgery, Loyola University Chicago Stritch School of Medicine, Maywood, IL 60153
| | - Tanmay S Chavan
- Department of Medicinal Chemistry, University of Illinois, Chicago, IL 60607
| | - Lioubov I Brueggemann
- Department of Molecular Pharmacology and Therapeutics, Loyola University Chicago Stritch School of Medicine, Maywood, IL 60153
| | - Kenneth L Byron
- Department of Molecular Pharmacology and Therapeutics, Loyola University Chicago Stritch School of Medicine, Maywood, IL 60153
| | - Nadya I Tarasova
- Cancer and Inflammation Program, National Cancer Institute, Frederick, MD 21702-1201
| | - Brian F Volkman
- Department of Biochemistry, Medical College of Wisconsin, Milwaukee, WI 53226; and
| | - Vadim Gaponenko
- Department of Biochemistry and Molecular Genetics, University of Illinois, Chicago, IL 60607
| | - Matthias Majetschak
- Burn and Shock Trauma Research Institute, Department of Surgery, Loyola University Chicago Stritch School of Medicine, Maywood, IL 60153; Department of Molecular Pharmacology and Therapeutics, Loyola University Chicago Stritch School of Medicine, Maywood, IL 60153;
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27
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Varner CT, Rosen T, Martin JT, Kane RS. Recent advances in engineering polyvalent biological interactions. Biomacromolecules 2015; 16:43-55. [PMID: 25426695 PMCID: PMC4294584 DOI: 10.1021/bm5014469] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2014] [Revised: 11/11/2014] [Indexed: 12/21/2022]
Abstract
Polyvalent interactions, where multiple ligands and receptors interact simultaneously, are ubiquitous in nature. Synthetic polyvalent molecules, therefore, have the ability to affect biological processes ranging from protein-ligand binding to cellular signaling. In this review, we discuss recent advances in polyvalent scaffold design and applications. First, we will describe recent developments in the engineering of polyvalent scaffolds based on biomolecules and novel materials. Then, we will illustrate how polyvalent molecules are finding applications as toxin and pathogen inhibitors, targeting molecules, immune response modulators, and cellular effectors.
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Affiliation(s)
- Chad T. Varner
- The Howard P. Isermann Department
of Chemical and Biological Engineering, Rensselaer Polytechnic Institute, Troy, New York 12180, United States
| | - Tania Rosen
- The Howard P. Isermann Department
of Chemical and Biological Engineering, Rensselaer Polytechnic Institute, Troy, New York 12180, United States
| | - Jacob T. Martin
- The Howard P. Isermann Department
of Chemical and Biological Engineering, Rensselaer Polytechnic Institute, Troy, New York 12180, United States
| | - Ravi S. Kane
- The Howard P. Isermann Department
of Chemical and Biological Engineering, Rensselaer Polytechnic Institute, Troy, New York 12180, United States
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28
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Müller A, König B. Preparation of luminescent chemosensors by post-functionalization of vesicle surfaces. Org Biomol Chem 2015; 13:1690-9. [DOI: 10.1039/c4ob02327g] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
Abstract
A variety of luminescent chemosensors is obtained by post-functionalization of self-assembled phospholipid vesicles with receptor units ranging from metal complexes to aptamers.
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Affiliation(s)
- Andreas Müller
- Institut für Organische Chemie
- Universität Regensburg
- 93040 Regensburg
- Germany
| | - Burkhard König
- Institut für Organische Chemie
- Universität Regensburg
- 93040 Regensburg
- Germany
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29
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30
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Poznik M, König B. Cooperative hydrolysis of aryl esters on functionalized membrane surfaces and in micellar solutions. Org Biomol Chem 2014; 12:3175-80. [PMID: 24722623 DOI: 10.1039/c4ob00247d] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Catalytic hydrolysis of peptides, proteins, phosphates or carboxylate esters in nature is catalysed by enzymes, which are efficient, fast and selective. Most of the hydrolytic chemical catalysts published so far mimic the active site of enzymes and contain metal complexes and amino acid residues. Their synthesis can be laborious, while the hydrolytic activity is still limited compared to enzymes. We present an approach that uses fluid membranes of vesicles and micelles as a support for amphiphilic additives, which cooperatively cleave aryl ester bonds. The membrane anchored bis-Zn(II)-complex 1 is hydrolytically active and hydrolyses fluorescein diacetate (FDA) with a second order rate constant (k2) of 0.9 M(-1) s(-1). The hydrolytic activity is modulated by co-embedded membrane additives, bearing common amino acid side chain functional groups. With this approach, the hydrolytic activity of the system is enhanced up to 16 fold in comparison with cyclen 1 (k2 = 14.7 M(-1) s(-1)). DOPC and DSPC lipids form at room temperature fluid or gel phase membranes, respectively. Omitting the lipid, micellar solutions were obtained with hydrolytic activity reaching k2 = 13.4 M(-1) s(-1). It is shown that cooperative hydrolysis is favoured in fluid membranes and micelles, allowing the active moieties to arrange freely. The embedding and dynamic self-assembly of membrane active components in fluid membranes and micelles provide facile access to hydrolytically active soft interfaces.
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Affiliation(s)
- M Poznik
- Institut für Organische Chemie, Universität Regensburg, Universitätsstraße 31, D-93053 Regensburg, Germany.
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Knez K, Noppe W, Geukens N, Janssen KPF, Spasic D, Heyligen J, Vriens K, Thevissen K, Cammue BPA, Petrenko V, Ulens C, Deckmyn H, Lammertyn J. Affinity Comparison of p3 and p8 Peptide Displaying Bacteriophages Using Surface Plasmon Resonance. Anal Chem 2013; 85:10075-82. [DOI: 10.1021/ac402192k] [Citation(s) in RCA: 25] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Affiliation(s)
- Karel Knez
- BIOSYST-MeBioS, KU Leuven, Willem De Croylaan 42, P.O. Box 2428, B-3001 Leuven, Belgium
| | - Wim Noppe
- IRF
Life Siences, KU Leuven Kulak, E. Sabbelaan 53, B-8500 Kortrijk, Belgium
| | - Nick Geukens
- PharmAbs, The KU Leuven Antibody Center, O&N II, Herestraat 49, P.O. Box 824, B-3000 Leuven, Belgium
| | - Kris P. F. Janssen
- BIOSYST-MeBioS, KU Leuven, Willem De Croylaan 42, P.O. Box 2428, B-3001 Leuven, Belgium
| | - Dragana Spasic
- BIOSYST-MeBioS, KU Leuven, Willem De Croylaan 42, P.O. Box 2428, B-3001 Leuven, Belgium
| | - Jeroen Heyligen
- BIOSYST-MeBioS, KU Leuven, Willem De Croylaan 42, P.O. Box 2428, B-3001 Leuven, Belgium
| | - Kim Vriens
- Centre
for Microbial and Plant Genetics, KU Leuven, Kasteelpark Arenberg 20, P.O. 2460, B-3001 Heverlee, Belgium
| | - Karin Thevissen
- Centre
for Microbial and Plant Genetics, KU Leuven, Kasteelpark Arenberg 20, P.O. 2460, B-3001 Heverlee, Belgium
| | - Bruno P. A. Cammue
- Centre
for Microbial and Plant Genetics, KU Leuven, Kasteelpark Arenberg 20, P.O. 2460, B-3001 Heverlee, Belgium
| | - Valery Petrenko
- Auburn University, College of Veterinary Medicine,
Department of Pathobiology, 269 Greene Hall, Auburn, Alabama 36849-5519, United States
| | - Chris Ulens
- Laboratory for Structural Neurobiology, KU Leuven, O&N I, Herestraat 49, P.O. Box 601, B-3000 Leuven, Belgium
| | - Hans Deckmyn
- IRF
Life Siences, KU Leuven Kulak, E. Sabbelaan 53, B-8500 Kortrijk, Belgium
- PharmAbs, The KU Leuven Antibody Center, O&N II, Herestraat 49, P.O. Box 824, B-3000 Leuven, Belgium
| | - Jeroen Lammertyn
- BIOSYST-MeBioS, KU Leuven, Willem De Croylaan 42, P.O. Box 2428, B-3001 Leuven, Belgium
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