1
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Wojdyla Z, Srnec M. Radical ligand transfer: mechanism and reactivity governed by three-component thermodynamics. Chem Sci 2024; 15:8459-8471. [PMID: 38846394 PMCID: PMC11151871 DOI: 10.1039/d4sc01507j] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2024] [Accepted: 04/19/2024] [Indexed: 06/09/2024] Open
Abstract
Here, we demonstrate that the relationship between reactivity and thermodynamics in radical ligand transfer chemistry can be understood if this chemistry is dissected as concerted ion-electron transfer (cIET). Namely, we investigate radical ligand transfer reactions from the perspective of thermodynamic contributions to the reaction barrier: the diagonal effect of the free energy of the reaction, and the off-diagonal effect resulting from asynchronicity and frustration, which we originally derived from the thermodynamic cycle for concerted proton-electron transfer (cPET). This study on the OH transfer reaction shows that the three-component thermodynamic model goes beyond cPET chemistry, successfully capturing the changes in radical ligand transfer reactivity in a series of model FeIII-OH⋯(diflouro)cyclohexadienyl systems. We also reveal the decisive role of the off-diagonal thermodynamics in determining the reaction mechanism. Two possible OH transfer mechanisms, in which electron transfer is coupled with either OH- and OH+ transfer, are associated with two competing thermodynamic cycles. Consequently, the operative mechanism is dictated by the cycle yielding a more favorable off-diagonal effect on the barrier. In line with this thermodynamic link to the mechanism, the transferred OH group in OH-/electron transfer retains its anionic character and slightly changes its volume in going from the reactant to the transition state. In contrast, OH+/electron transfer develops an electron deficiency on OH, which is evidenced by an increase in charge and a simultaneous decrease in volume. In addition, the observations in the study suggest that an OH+/electron transfer reaction can be classified as an adiabatic radical transfer, and the OH-/electron transfer reaction as a less adiabatic ion-coupled electron transfer.
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Affiliation(s)
- Zuzanna Wojdyla
- J. Heyrovský Institute of Physical Chemistry, The Czech Academy of Sciences Dolejškova 3 Prague 8 18223 Czech Republic
| | - Martin Srnec
- J. Heyrovský Institute of Physical Chemistry, The Czech Academy of Sciences Dolejškova 3 Prague 8 18223 Czech Republic
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2
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Gong Z, Wang L, Xu Y, Xie D, Qi X, Nam W, Guo M. Enhanced Reactivities of Iron(IV)-Oxo Porphyrin Species in Oxidation Reactions Promoted by Intramolecular Hydrogen-Bonding. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024; 11:e2310333. [PMID: 38477431 PMCID: PMC11109629 DOI: 10.1002/advs.202310333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2023] [Revised: 02/19/2024] [Indexed: 03/14/2024]
Abstract
High-valent iron-oxo species are one of the common intermediates in both biological and biomimetic catalytic oxidation reactions. Recently, hydrogen-bonding (H-bonding) has been proved to be critical in determining the selectivity and reactivity. However, few examples have been established for mechanistic insights into the H-bonding effect. Moreover, intramolecular H-bonding effect on both C-H activation and oxygen atom transfer (OAT) reactions in synthetic porphyrin model system has not been investigated yet. In this study, a series of heme-containing iron(IV)-oxo porphyrin species with or without intramolecular H-bonding are synthesized and characterized. Kinetic studies revealed that intramolecular H-bonding can significantly enhance the reactivity of iron(IV)-oxo species in OAT, C-H activation, and electron-transfer reactions. This unprecedented unified H-bonding effect is elucidated by theoretical calculations, which showed that intramolecular H-bonding interactions lower the energy of the anti-bonding orbital of iron(IV)-oxo porphyrin species, resulting in the enhanced reactivities in oxidation reactions irrespective of the reaction type. To the best of the knowledge, this is the first extensive investigation on the intramolecular H-bonding effect in heme system. The results show that H-bonding interactions have a unified effect with iron(IV)-oxo porphyrin species in all three investigated reactions.
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Affiliation(s)
- Zhe Gong
- College of Chemistry and Molecular SciencesWuhan UniversityWuhanHubei430072P. R. China
| | - Liwei Wang
- College of Chemistry and Molecular SciencesWuhan UniversityWuhanHubei430072P. R. China
| | - Yiran Xu
- College of Chemistry and Molecular SciencesWuhan UniversityWuhanHubei430072P. R. China
| | - Duanfeng Xie
- College of Chemistry and Molecular SciencesWuhan UniversityWuhanHubei430072P. R. China
| | - Xiaotian Qi
- College of Chemistry and Molecular SciencesWuhan UniversityWuhanHubei430072P. R. China
| | - Wonwoo Nam
- Department of Chemistry and Nano ScienceEwha Womans UniversitySeoul03760South Korea
| | - Mian Guo
- College of Chemistry and Molecular SciencesWuhan UniversityWuhanHubei430072P. R. China
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3
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Sarkar W, LaDuca A, Wilson JR, Szymczak NK. Iron-Catalyzed C-H Oxygenation Using Perchlorate Enabled by Secondary Sphere Hydrogen Bonds. J Am Chem Soc 2024; 146:10508-10516. [PMID: 38564312 PMCID: PMC11137739 DOI: 10.1021/jacs.3c14433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Abstract
Perchlorate (ClO4-) is a groundwater pollutant that is challenging to remediate. We report a strategy to use Fe(II) tris(2-pyridylmethyl)amine (TPA) complexes featuring appended aniline hydrogen bonds (H-bonds) to promote ClO4- reduction. These complexes facilitate oxygen atom transfer from ClO4- to PPh3 and C-H oxygenation reactions of organic substrates. Catalytic reactions using 15 mol % afforded excellent yields for oxygenation of anthracene and cyclic alkyl aromatics, and this methodology tolerates aryl halides as well as heterocycles containing either O, S, or N.
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Affiliation(s)
- Writhabrata Sarkar
- Department of Chemistry, University of Michigan, 930 N. University, Ann Arbor, Michigan 48109, United States
| | - Andrew LaDuca
- Department of Chemistry, University of Michigan, 930 N. University, Ann Arbor, Michigan 48109, United States
| | - Jessica R Wilson
- Department of Chemistry, University of Michigan, 930 N. University, Ann Arbor, Michigan 48109, United States
| | - Nathaniel K Szymczak
- Department of Chemistry, University of Michigan, 930 N. University, Ann Arbor, Michigan 48109, United States
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4
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Keshari K, Santra A, Velasco L, Sauvan M, Kaur S, Ugale AD, Munshi S, Marco JF, Moonshiram D, Paria S. Functional Model of Compound II of Cytochrome P450: Spectroscopic Characterization and Reactivity Studies of a Fe IV-OH Complex. JACS AU 2024; 4:1142-1154. [PMID: 38559734 PMCID: PMC10976569 DOI: 10.1021/jacsau.3c00844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Revised: 02/12/2024] [Accepted: 02/26/2024] [Indexed: 04/04/2024]
Abstract
Herein, we show that the reaction of a mononuclear FeIII(OH) complex (1) with N-tosyliminobenzyliodinane (PhINTs) resulted in the formation of a FeIV(OH) species (3). The obtained complex 3 was characterized by an array of spectroscopic techniques and represented a rare example of a synthetic FeIV(OH) complex. The reaction of 1 with the one-electron oxidizing agent was reported to form a ligand-oxidized FeIII(OH) complex (2). 3 revealed a one-electron reduction potential of -0.22 V vs Fc+/Fc at -15 °C, which was 150 mV anodically shifted than 2 (Ered = -0.37 V vs Fc+/Fc at -15 °C), inferring 3 to be more oxidizing than 2. 3 reacted spontaneously with (4-OMe-C6H4)3C• to form (4-OMe-C6H4)3C(OH) through rebound of the OH group and displayed significantly faster reactivity than 2. Further, activation of the hydrocarbon C-H and the phenolic O-H bond by 2 and 3 was compared and showed that 3 is a stronger oxidant than 2. A detailed kinetic study established the occurrence of a concerted proton-electron transfer/hydrogen atom transfer reaction of 3. Studying one-electron reduction of 2 and 3 using decamethylferrocene (Fc*) revealed a higher ket of 3 than 2. The study established that the primary coordination sphere around Fe and the redox state of the metal center is very crucial in controlling the reactivity of high-valent Fe-OH complexes. Further, a FeIII(OMe) complex (4) was synthesized and thoroughly characterized, including X-ray structure determination. The reaction of 4 with PhINTs resulted in the formation of a FeIV(OMe) species (5), revealing the presence of two FeIV species with isomer shifts of -0.11 mm/s and = 0.17 mm/s in the Mössbauer spectrum and showed FeIV/FeIII potential at -0.36 V vs Fc+/Fc couple in acetonitrile at -15 °C. The reactivity studies of 5 were investigated and compared with the FeIV(OH) complex (3).
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Affiliation(s)
- Kritika Keshari
- Department
of Chemistry, Indian Institute of Technology
Delhi, Hauz Khas, New Delhi 110016, India
| | - Aakash Santra
- Department
of Chemistry, Indian Institute of Technology
Delhi, Hauz Khas, New Delhi 110016, India
| | - Lucía Velasco
- Instituto
de Ciencia de Materiales de Madrid, Consejo
Superior de Investigaciones Científicas, Sor Juana Inés de la Cruz, 3, Madrid 28049, Spain
| | - Maxime Sauvan
- Instituto
de Ciencia de Materiales de Madrid, Consejo
Superior de Investigaciones Científicas, Sor Juana Inés de la Cruz, 3, Madrid 28049, Spain
| | - Simarjeet Kaur
- Department
of Chemistry, Indian Institute of Technology
Delhi, Hauz Khas, New Delhi 110016, India
| | - Ashok D. Ugale
- Instituto
de Ciencia de Materiales de Madrid, Consejo
Superior de Investigaciones Científicas, Sor Juana Inés de la Cruz, 3, Madrid 28049, Spain
| | - Sandip Munshi
- School
of Chemical Science, Indian Association
for the Cultivation of Science, Raja S C Mulliick Road, Kolkata 700032, India
| | - J. F. Marco
- Instituto
de Quimica Fisica Blas Cabrera, Consejo
Superior de Investigaciones Científicas, C. de Serrano, 119, Serrano, Madrid 28006, Spain
| | - Dooshaye Moonshiram
- Instituto
de Ciencia de Materiales de Madrid, Consejo
Superior de Investigaciones Científicas, Sor Juana Inés de la Cruz, 3, Madrid 28049, Spain
| | - Sayantan Paria
- Department
of Chemistry, Indian Institute of Technology
Delhi, Hauz Khas, New Delhi 110016, India
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5
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Joy J, Schaefer AJ, Teynor MS, Ess DH. Dynamical Origin of Rebound versus Dissociation Selectivity during Fe-Oxo-Mediated C-H Functionalization Reactions. J Am Chem Soc 2024; 146:2452-2464. [PMID: 38241715 DOI: 10.1021/jacs.3c09891] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2024]
Abstract
The mechanism of catalytic C-H functionalization of alkanes by Fe-oxo complexes is often suggested to involve a hydrogen atom transfer (HAT) step with the formation of a radical-pair intermediate followed by diverging pathways for radical rebound, dissociation, or desaturation. Recently, we showed that in some Fe-oxo reactions, the radical pair is a nonstatistical-type intermediate and dynamic effects control rebound versus dissociation pathway selectivity. However, the effect of the solvent cage on the stability and lifetime of the radical-pair intermediate has never been analyzed. Moreover, because of the extreme complexity of motion that occurs during dynamics trajectories, the underlying physical origin of pathway selectivity has not yet been determined. For the reaction between [(TQA_Cl)FeIVO]+ and cyclohexane, here, we report explicit solvent trajectories and machine learning analysis on transition-state sampled features (e.g., vibrational, velocity, and geometric) that identified the transferring hydrogen atom kinetic energy as the most important factor controlling rebound versus nonrebound dynamics trajectories, which provides an explanation for our previously proposed dynamic matching effect in fast rebound trajectories that bypass the radical-pair intermediate. Manual control of the reaction trajectories confirmed the importance of this feature and provides a mechanism to enhance or diminish selectivity for the rebound pathway. This led to a general catalyst design principle and proof-of-principle catalyst design that showcases how to control rebound versus dissociation reaction pathway selectivity.
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Affiliation(s)
- Jyothish Joy
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84604, United States
| | - Anthony J Schaefer
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84604, United States
| | - Matthew S Teynor
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84604, United States
| | - Daniel H Ess
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84604, United States
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6
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Li Y, Abelson C, Que L, Wang D. 10 6-fold faster C-H bond hydroxylation by a Co III,IV2(µ-O) 2 complex [via a Co III2(µ-O)(µ-OH) intermediate] versus its Fe IIIFe IV analog. Proc Natl Acad Sci U S A 2023; 120:e2307950120. [PMID: 38085777 PMCID: PMC10743362 DOI: 10.1073/pnas.2307950120] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2023] [Accepted: 11/04/2023] [Indexed: 12/24/2023] Open
Abstract
The hydroxylation of C-H bonds can be carried out by the high-valent CoIII,IV2(µ-O)2 complex 2a supported by the tetradentate tris(2-pyridylmethyl)amine ligand via a CoIII2(µ-O)(µ-OH) intermediate (3a). Complex 3a can be independently generated either by H-atom transfer (HAT) in the reaction of 2a with phenols as the H-atom donor or protonation of its conjugate base, the CoIII2(µ-O)2 complex 1a. Resonance Raman spectra of these three complexes reveal oxygen-isotope-sensitive vibrations at 560 to 590 cm-1 associated with the symmetric Co-O-Co stretching mode of the Co2O2 diamond core. Together with a Co•••Co distance of 2.78(2) Å previously identified for 1a and 2a by Extended X-ray Absorption Fine Structure (EXAFS) analysis, these results provide solid evidence for their "diamond core" structural assignments. The independent generation of 3a allows us to investigate HAT reactions of 2a with phenols in detail, measure the redox potential and pKa of the system, and calculate the O-H bond strength (DO-H) of 3a to shed light on the C-H bond activation reactivity of 2a. Complex 3a is found to be able to transfer its hydroxyl ligand onto the trityl radical to form the hydroxylated product, representing a direct experimental observation of such a reaction by a dinuclear cobalt complex. Surprisingly, reactivity comparisons reveal 2a to be 106-fold more reactive in oxidizing hydrocarbon C-H bonds than corresponding FeIII,IV2(µ-O)2 and MnIII,IV2(µ-O)2 analogs, an unexpected outcome that raises the prospects for using CoIII,IV2(µ-O)2 species to oxidize alkane C-H bonds.
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Affiliation(s)
- Yan Li
- Department of Chemistry and Biochemistry, Center for Biomolecular Structure and Dynamics, University of Montana, Missoula, MT59812
| | - Chase Abelson
- Department of Chemistry and Center for Metals in Biocatalysis, University of Minnesota, Minneapolis, MN55455
| | - Lawrence Que
- Department of Chemistry and Center for Metals in Biocatalysis, University of Minnesota, Minneapolis, MN55455
| | - Dong Wang
- Department of Chemistry and Biochemistry, Center for Biomolecular Structure and Dynamics, University of Montana, Missoula, MT59812
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7
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Yadav V, Wen L, Yadav S, Siegler MA, Goldberg DP. Selective Radical Transfer in a Series of Nonheme Iron(III) Complexes. Inorg Chem 2023; 62:17830-17842. [PMID: 37857315 PMCID: PMC11296666 DOI: 10.1021/acs.inorgchem.3c02617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2023]
Abstract
A series of nonheme iron complexes, FeIII(BNPAPh2O)(Lax)(Leq) (Lax/eq = N3-, NCS-, NCO-, and Cl-) have been synthesized using the previously reported BNPAPh2O- ligand. The ferrous analogs FeII(BNPAPh2O)(Lax) (Lax = N3-, NCS-, and NCO-) were also prepared. The complexes were structurally characterized using single crystal X-ray diffraction, which shows that all the FeIII complexes are six-coordinate, with one anionic ligand (Lax) in the H-bonding axial site and the other anionic ligand (Leq) in the equatorial plane, cis to the Lax ligand. The reaction of FeIII(BNPAPh2O-)(Lax)(Leq) with Ph3C• shows that one ligand is selectively transferred in each case. A selectivity trend emerges that shows •N3 is the most favored for transfer in each case to the carbon radical, whereas Cl• is the least favored. The NCO and NCS ligands showed an intermediate propensity for radical transfer, with NCS > NCO. The overall order of selectivity is N3 > NCS > NCO > Cl. In addition, we also demonstrated that H-bonding has a small effect on governing product selectivity by using a non-H-bonded ligand (DPAPh2O-). This study demonstrates the inherent radical transfer selectivity of nonhydroxo-ligated nonheme iron(III) complexes, which could be useful for efforts in synthetic and (bio)catalytic C-H functionalization.
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Affiliation(s)
- Vishal Yadav
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Lyupeng Wen
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Sudha Yadav
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Maxime A Siegler
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - David P Goldberg
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
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8
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Heuer A, Coste SC, Singh G, Mercado BQ, Mayer JM. A Guide to Tris(4-Substituted)-triphenylmethyl Radicals. J Org Chem 2023; 88:9893-9901. [PMID: 37403939 PMCID: PMC10367072 DOI: 10.1021/acs.joc.3c00658] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/26/2023] [Indexed: 07/06/2023]
Abstract
Triphenylmethyl (trityl, Ph3C•) radicals have been considered the prototypical carbon-centered radical since their discovery in 1900. Tris(4-substituted)-trityls [(4-R-Ph)3C•] have since been used in many ways due to their stability, persistence, and spectroscopic activity. Despite their widespread use, existing synthetic routes toward tris(4-substituted)-trityl radicals are not reproducible and often lead to impure materials. We report here robust syntheses of six electronically varied (4-RPh)3C•, where R = NMe2, OCH3, tBu, Ph, Cl, and CF3. The characterization reported for the radicals and related compounds includes five X-ray crystal structures, electrochemical potentials, and optical spectra. Each radical is best accessed using a stepwise approach from the trityl halide, (RPh)3CCl or (RPh)3CBr, by controllably removing the halide with subsequent 1e- reduction of the trityl cation, (RPh)3C+. These syntheses afford consistently crystalline trityl radicals of high purity for further studies.
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Affiliation(s)
| | | | - Gurjot Singh
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Brandon Q. Mercado
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - James M. Mayer
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
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9
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Joy J, Ess DH. Direct Dynamics Trajectories Demonstrate Dynamic Matching and Nonstatistical Radical Pair Intermediates during Fe-Oxo-Mediated C-H Functionalization Reactions. J Am Chem Soc 2023; 145:7628-7637. [PMID: 36952628 DOI: 10.1021/jacs.3c01196] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/25/2023]
Abstract
The generally proposed mechanism for the reaction between non-heme Fe-oxo complexes and alkane C-H bonds involves a hydrogen atom transfer (HAT) reaction step with a radical pair intermediate that then has competitive radical rebound, dissociation, or desaturation pathways. Here, we report density functional theory-based quasiclassical direct dynamics trajectories that examine post-HAT reaction dynamics. Trajectories revealed that the radical pair intermediate can be a nonstatistical type intermediate without complete internal vibrational redistribution and post-HAT selectivity is generally determined by dynamic effects. Fast rebound trajectories occur through dynamic matching between the rotational motion of the newly formed Fe-OH bond and collision with the alkane radical, and all of this occurs through a nonsynchronous dynamically concerted process that circumvents the radical pair intermediate structure. For radical pair dissociation, trajectories proceeded to the radical pair intermediate for a very brief time, followed by complete dissociation. These trajectories provide a new viewpoint and model to understand the inherent reaction pathway selectivity for non-heme Fe-oxo-mediated C-H functionalization reactions.
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Affiliation(s)
- Jyothish Joy
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States
| | - Daniel H Ess
- Department of Chemistry and Biochemistry, Brigham Young University, Provo, Utah 84602, United States
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10
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Shaya J, Aloum L, Lu CS, Corridon PR, Aoudi A, Shunnar A, Alefishat E, Petroianu G. Theoretical Study of Hydroxylation of α- and β-Pinene by a Cytochrome P450 Monooxygenase Model. Int J Mol Sci 2023; 24:ijms24065150. [PMID: 36982225 PMCID: PMC10048887 DOI: 10.3390/ijms24065150] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/16/2023] [Revised: 02/09/2023] [Accepted: 02/13/2023] [Indexed: 03/30/2023] Open
Abstract
Previous studies on biocatalytic transformations of pinenes by cytochrome P450 (CYP) enzymes reveal the formation of different oxygenated products from a single substrate due to the multistate reactivity of CYP and the many reactive sites in the pinene scaffold. Up until now, the detailed mechanism of these biocatalytic transformations of pinenes have not been reported. Hereby, we report a systematic theoretical study of the plausible hydrogen abstraction and hydroxylation reactions of α- and β-pinenes by CYP using the density functional theory (DFT) method. All DFT calculations in this study were based on B3LYP/LAN computational methodology using the Gaussian09 software. We used the B3LYP functional with corrections for dispersive forces, BSSE, and anharmonicity to study the mechanism and thermodynamic properties of these reactions using a bare model (without CYP) and a pinene-CYP model. According to the potential energy surface and Boltzmann distribution for radical conformers, the major reaction products of CYP-catalyzed hydrogen abstraction from β-pinene are the doublet trans (53.4%) and doublet cis (46.1%) radical conformer at delta site. The formation of doublet cis/trans hydroxylated products released a total Gibbs free energy of about 48 kcal/mol. As for alpha pinene, the most stable radicals were trans-doublet (86.4%) and cis-doublet (13.6%) at epsilon sites, and their hydroxylation products released a total of ~50 kcal/mol Gibbs free energy. Our results highlight the likely C-H abstraction and oxygen rebounding sites accounting for the multi-state of CYP (doublet, quartet, and sextet spin states) and the formation of different conformers due to the presence of cis/trans allylic hydrogen in α-pinene and β-pinene molecules.
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Affiliation(s)
- Janah Shaya
- Department of Chemistry, College of Arts and Sciences, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates
| | - Lujain Aloum
- Department of Pharmacology, College of Medicine and Health Sciences, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates
| | - Chung-Shin Lu
- Department of General Education, National Taichung University of Science and Technology, Taichung 404, Taiwan, China
| | - Peter R Corridon
- Department of Immunology and Physiology, College of Medicine and Health Sciences, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates
- Biomedical Engineering and Healthcare Engineering Innovation Center, Khalifa University, Abu Dhabi 127788, United Arab Emirates
- Center for Biotechnology, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates
| | - Abdulrahman Aoudi
- Department of Chemistry, College of Arts and Sciences, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates
| | - Abeer Shunnar
- Department of Chemistry, College of Arts and Sciences, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates
| | - Eman Alefishat
- Department of Pharmacology, College of Medicine and Health Sciences, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates
- Center for Biotechnology, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates
- Department of Biopharmaceutics and Clinical Pharmacy, School of Pharmacy, The University of Jordan, Amman 11972, Jordan
| | - Georg Petroianu
- Department of Pharmacology, College of Medicine and Health Sciences, Khalifa University of Science and Technology, Abu Dhabi 127788, United Arab Emirates
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11
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Bera M, Kaur S, Keshari K, Moonshiram D, Paria S. Characterization of Reaction Intermediates Involved in the Water Oxidation Reaction of a Molecular Cobalt Complex. Inorg Chem 2022; 61:21035-21046. [PMID: 36517453 DOI: 10.1021/acs.inorgchem.2c03559] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Abstract
Molecular cobalt(III) complexes of bis-amidate-bis-alkoxide ligands, (Me4N)[CoIII(L1)] (1) and (Me4N)[CoIII(L2)] (2), are synthesized and assessed through a range of characterization techniques. Electrocatalytic water oxidation activity of the Co complexes in a 0.1 M phosphate buffer solution revealed a ligand-centered 2e-/1H+ transfer event at 0.99 V followed by catalytic water oxidation (WO) at an onset overpotential of 450 mV. By contrast, 2 reveals a ligand-based oxidation event at 0.9 V and a WO onset overpotential of 430 mV. Constant potential electrolysis study and rinse test experiments confirm the homogeneous nature of the Co complexes during WO. The mechanistic investigation further shows a pH-dependent change in the reaction pathway. On the one hand, below pH 7.5, two consecutive ligand-based oxidation events result in the formation of a CoIII(L2-)(OH) species, which, followed by a proton-coupled electron transfer reaction, generates a CoIV(L2-)(O) species that undergoes water nucleophilic attack to form the O-O bond. On the other hand, at higher pH, two ligand-based oxidation processes merge together and result in the formation of a CoIII(L2-)(OH) complex, which reacts with OH- to yield the O-O bond. The ligand-coordinated reaction intermediates involved in the WO reaction are thoroughly studied through an array of spectroscopic techniques, including UV-vis absorption spectroscopy, electron paramagnetic resonance, and X-ray absorption spectroscopy. A mononuclear CoIII(OH) complex supported by the one-electron oxidized ligand, [CoIII(L3-)(OH)]-, a formal CoIV(OH) complex, has been characterized, and the compound was shown to participate in the hydroxide rebound reaction, which is a functional mimic of Compound II of Cytochrome P450.
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Affiliation(s)
- Moumita Bera
- Department of Chemistry, Indian Institute of Technology Delhi, Hauz Khas, New Delhi110016, India
| | - Simarjeet Kaur
- Department of Chemistry, Indian Institute of Technology Delhi, Hauz Khas, New Delhi110016, India
| | - Kritika Keshari
- Department of Chemistry, Indian Institute of Technology Delhi, Hauz Khas, New Delhi110016, India
| | - Dooshaye Moonshiram
- Consejo Superior de Investigaciones Científicas, Instituto de Ciencia de Materiales de Madrid, Sor Juana Inés de la Cruz, 3, 28049Madrid, Spain
| | - Sayantan Paria
- Department of Chemistry, Indian Institute of Technology Delhi, Hauz Khas, New Delhi110016, India
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12
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Ren W, Schulz CE, Shroyer MH, Xu W, Xi S, An P, Guo W, Li J. Electronic Configurations and the Effect of Peripheral Substituents of (Nitrosyl)iron Corroles. Inorg Chem 2022; 61:20385-20396. [DOI: 10.1021/acs.inorgchem.2c03026] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Wanjie Ren
- College of Materials Science and Optoelectronic Technology and Chinese Academy of Sciences Center for Excellence in Topological Quantum Computation, University of Chinese Academy of Sciences, Yanqi Lake, Huairou District, Beijing101408, P. R. China
| | - Charles E. Schulz
- Department of Physics and Astronomy, Knox College, Galesburg, Illinois61401, United States
| | - Mark H. Shroyer
- Department of Physics and Astronomy, Knox College, Galesburg, Illinois61401, United States
| | - Wei Xu
- Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences (CAS), Beijing100049, P. R. China
- RICMASS, Rome International Center for Materials Science Superstripes, Via dei Sabelli 119A, Rome00185, Italy
| | - Shibo Xi
- Institute of Chemical and Engineering Sciences, Agency for Science, Technology and Research, 1 Pesek Road, Jurong Island, Singapore627833, Singapore
| | - Pengfei An
- Beijing Synchrotron Radiation Facility, Institute of High Energy Physics, Chinese Academy of Sciences (CAS), Beijing100049, P. R. China
| | - Wenping Guo
- National Energy Center for Coal to Clean Fuels, Synfuels China Co., Ltd., Huairou District, Beijing101400, P. R. China
| | - Jianfeng Li
- College of Materials Science and Optoelectronic Technology and Chinese Academy of Sciences Center for Excellence in Topological Quantum Computation, University of Chinese Academy of Sciences, Yanqi Lake, Huairou District, Beijing101408, P. R. China
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13
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Kardam V, Kalita S, Dubey KD. Computations reveal a crucial role of an aromatic dyad in the catalytic function of plant cytochrome P450 mint superfamily. J Inorg Biochem 2022; 237:111990. [PMID: 36115330 DOI: 10.1016/j.jinorgbio.2022.111990] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/31/2022] [Revised: 07/27/2022] [Accepted: 08/31/2022] [Indexed: 01/18/2023]
Abstract
Enzymes are highly specific for their native functions, however with advances in bioengineering tools such as directed evolution, several enzymes are being repurposed for the secondary function of contemporary significance(Khersonsky and Tawfik, 2010 [1]). Due to the functional versatility, the Cytochrome P450 (CYP450) superfamily has become the ideal scaffold for such bioengineering. In the current study, using MD (molecular dynamics) simulations and hybrid QM/MM (Quantum mechanics/molecular mechanics) calculations, we have studied the mechanism of spontaneous emergence of a secondary function due to a single site mutation in two plant CYP450 enzymes from the mint family. The MD simulations of WT (wild type) CYP71D18 and CYP71D13 enzymes and their variants show a crucial gating mechanism by aromatic dyad formed by Phe121 and Phe363 which regulates the substrate recognition. The QM/MM calculations reveal that the hydroxylation reactions at C3 and C6 positions in WT CYP71D18 and CYP71D13 enzymes as well as their variants follow a hydrogen atom transfer (HAT) followed by a single electron transfer (SET) mechanism, which is different from the typical rebound mechanism shown by most of the CYP450 enzymes.
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Affiliation(s)
- Vandana Kardam
- Department of Chemistry, School of Natural Sciences, Shiv Nadar Institution of Eminence Delhi-NCR, NH91, Tehsil Dadri, Greater Noida, Uttar Pradesh 201314, India
| | - Surajit Kalita
- Department of Chemistry, School of Natural Sciences, Shiv Nadar Institution of Eminence Delhi-NCR, NH91, Tehsil Dadri, Greater Noida, Uttar Pradesh 201314, India
| | - Kshatresh Dutta Dubey
- Department of Chemistry, School of Natural Sciences, Shiv Nadar Institution of Eminence Delhi-NCR, NH91, Tehsil Dadri, Greater Noida, Uttar Pradesh 201314, India.
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14
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Yan W, Xing Q, Guo O, Feng H, Liu H, Deshlahra P, Li X, Chen Y. A Combination of "Push Effect" Strategy with "Triple-Phase-Boundary Engineering" on Iron Porphyrin-Based MOFs: Enhanced Selectivity and Activity for Oxygen Reduction. ACS APPLIED MATERIALS & INTERFACES 2022; 14:50751-50761. [PMID: 36322477 DOI: 10.1021/acsami.2c12074] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/16/2023]
Abstract
Herein, the "push effect" strategy combined with "triple-phase-boundary" (TPB) engineering was innovatively employed to target the single Fe-N4 sites in an iron porphyrin-based metal-organic framework, with axially coordinated 4-octylpyridine groups on Fe-N4 (named as PCN-224 (Fe)-1). The amphiphilic 4-octylpyridine groups donate sufficient electrons toward Fe-N4 by the Fe-N(pyridine) coordination bond and simultaneously provide effective TBP reactive sites by the hydrophobic octyl terminals, resulting in enhanced ORR activity of the PCN-224 (Fe)-1 in hydrophobic octyl terminals, with an E1/2 of 0.81 V and complete 4-electron selectivity. Furthermore, TPB engineering is utilized to construct the PCN-224 (Fe)-1-based Zn-air battery with a maximum power density of 98 mW cm-2, demonstrating great practical application potential for molecule-based ORR catalysts. Meanwhile, the "push effect" mechanism on ORR is revealed by electron paramagnetic resonance, in situ UV-vis spectroelectrochemical analysis, and density functional theory.
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Affiliation(s)
- Wei Yan
- School of Materials Science and Engineering, China University of Petroleum (East China), Qingdao266580, P. R. China
| | - Qianli Xing
- Department of Materials Science and Engineering, Tufts University, Medford, Massachusetts02155, United States
| | - Ouyang Guo
- School of Materials Science and Engineering, China University of Petroleum (East China), Qingdao266580, P. R. China
| | - Hao Feng
- School of Materials Science and Engineering, China University of Petroleum (East China), Qingdao266580, P. R. China
| | - Heyuan Liu
- College of New Energy, China University of Petroleum (East China), Qingdao266580, P. R. China
| | - Prashant Deshlahra
- Department of Chemical and Biological Engineering, Tufts University, Medford, Massachusetts02155, United States
| | - Xiyou Li
- School of Materials Science and Engineering, China University of Petroleum (East China), Qingdao266580, P. R. China
| | - Yanli Chen
- School of Materials Science and Engineering, China University of Petroleum (East China), Qingdao266580, P. R. China
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15
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Yadav V, Wen L, Rodriguez RJ, Siegler MA, Goldberg DP. Nonheme Iron(III) Azide and Iron(III) Isothiocyanate Complexes: Radical Rebound Reactivity, Selectivity, and Catalysis. J Am Chem Soc 2022; 144:20641-20652. [PMID: 36382466 PMCID: PMC10226418 DOI: 10.1021/jacs.2c07224] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
The new nonheme iron complexes FeII(BNPAPh2O)(N3) (1), FeIII(BNPAPh2O)(OH)(N3) (2), FeII(BNPAPh2O)(OH) (3), FeIII(BNPAPh2O)(OH)(NCS) (4), FeII(BNPAPh2O)(NCS) (5), FeIII(BNPAPh2O)(NCS)2 (6), and FeIII(BNPAPh2O)(N3)2 (7) (BNPAPh2O = 2-(bis((6-(neopentylamino)pyridin-2-yl) methyl)amino)-1,1-diphenylethanolate) were synthesized and characterized by single crystal X-ray diffraction (XRD), as well as by 1H NMR, 57Fe Mössbauer, and ATR-IR spectroscopies. Complex 2 was reacted with a series of carbon radicals, ArX3C· (ArX = p-X-C6H4), analogous to the proposed radical rebound step for nonheme iron hydroxylases and halogenases. The results show that for ArX3C· (X = Cl, H, tBu), only OH· transfer occurs to give ArX3COH. However, when X = OMe, a mixture of alcohol (ArX3COH) (30%) and azide (ArX3CN3) (40%) products was obtained. These data indicate that the rebound selectivity is influenced by the electron-rich nature of the carbon radicals for the azide complex. Reaction of 2 with Ph3C· in the presence of Sc3+ or H+ reverses the selectivity, giving only the azide product. In contrast to the mixed selectivity seen for 2, the reactivity of cis-FeIII(OH)(NCS) with the X = OMe radical derivative leads only to hydroxylation. Catalytic azidation was achieved with 1 as catalyst, λ3-azidoiodane as oxidant and azide source, and Ph3CH as test substrate, giving Ph3CN3 in 84% (TON = 8). These studies show that hydroxylation is favored over azidation for nonheme iron(III) complexes, but the nature of the carbon radical can alter this selectivity. If an OH· transfer pathway can be avoided, the FeIII(N3) complexes are capable of mediating both stoichiometric and catalytic azidation.
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Affiliation(s)
- Vishal Yadav
- Department of Chemistry, The Johns Hopkins
University, 3400 North Charles Street, Baltimore, Maryland, 21218, USA
| | - Lyupeng Wen
- Department of Chemistry, The Johns Hopkins
University, 3400 North Charles Street, Baltimore, Maryland, 21218, USA
| | - Rodolfo J. Rodriguez
- Department of Chemistry, The Johns Hopkins
University, 3400 North Charles Street, Baltimore, Maryland, 21218, USA
| | - Maxime A. Siegler
- Department of Chemistry, The Johns Hopkins
University, 3400 North Charles Street, Baltimore, Maryland, 21218, USA
| | - David P. Goldberg
- Department of Chemistry, The Johns Hopkins
University, 3400 North Charles Street, Baltimore, Maryland, 21218, USA
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16
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A Computational Study on the Mechanism of Catalytic Cyclopropanation Reaction with Cobalt N-Confused Porphyrin: The Effects of Inner Carbon and Intramolecular Axial Ligand. Molecules 2022; 27:molecules27217266. [DOI: 10.3390/molecules27217266] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/28/2022] [Revised: 10/16/2022] [Accepted: 10/24/2022] [Indexed: 11/16/2022] Open
Abstract
The factors that affect acceleration and high trans/cis selectivity in the catalytic cyclopropanation reaction of styrene with ethyl diazoacetate by cobalt N-confused porphyrin (NCP) complexes were investigated using density functional theory calculations. The reaction rate was primarily related to the energy gap between the cobalt–carbene adduct intermediates, A and B, which was affected by the NCP skeletons and axial pyridine ligands more than the corresponding porphyrin complex. In addition, high trans/cis stereoselectivity was determined at the TS1 and, in part, in the isomerization process at the carbon-centered radical intermediates, Ctrans and Ccis.
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17
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Wu J, Long T, Wang H, Liang JX, Zhu C. Oriented External Electric Fields Regurating the Reaction Mechanism of CH 4 Oxidation Catalyzed by Fe(IV)-Oxo-Corrolazine: Insight from Density Functional Calculations. Front Chem 2022; 10:896944. [PMID: 35844657 PMCID: PMC9277104 DOI: 10.3389/fchem.2022.896944] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2022] [Accepted: 06/08/2022] [Indexed: 11/13/2022] Open
Abstract
Methane is the simplest alkane and can be used as an alternative energy source for oil and coal, but the greenhouse effect caused by its leakage into the air is not negligible, and its conversion into liquid methanol not only facilitates transportation, but also contributes to carbon neutrality. In order to find an efficient method for converting methane to methanol, CH4 oxidation catalyzed by Fe(IV)-Oxo-corrolazine (Fe(IV)-Oxo-Cz) and its reaction mechanism regulation by oriented external electric fields (OEEFs) are systematically studied by density functional calculations. The calculations show that Fe(IV)-Oxo-Cz can abstract one H atom from CH4 to form the intermediate with OH group connecting on the corrolazine ring, with the energy barrier of 25.44 kcal mol-1. And then the product methanol is formed through the following rebound reaction. Moreover, the energy barrier can be reduced to 20.72 kcal mol-1 through a two-state reaction pathway. Furthermore, the effect of OEEFs on the reaction is investigated. We found that OEEFs can effectively regulate the reaction by adjusting the stability of the reactant and the transition state through the interaction of electric field-molecular dipole moment. When the electric field is negative, the energy barrier of the reaction decreases with the increase of electric intensity. Moreover, the OEEF aligned along the intrinsic Fe‒O reaction axis can effectively regulate the ability of forming the OH on the corrolazine ring by adjusting the charges of O and H atoms. When the electric field intensity is -0.010 a.u., the OH can be directly rebounded to the CH3· before it is connecting on the corrolazine ring, thus forming the product directly from the transition state without passing through the intermediate with only an energy barrier of 17.34 kcal mol-1, which greatly improves the selectivity of the reaction.
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Affiliation(s)
| | | | | | - Jin-Xia Liang
- School of Chemistry and Chemical Engineering, Guizhou University, Guiyang, China
| | - Chun Zhu
- School of Chemistry and Chemical Engineering, Guizhou University, Guiyang, China
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18
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Shi H, Liang R, Phillips DL, Lee HK, Man WL, Lau KC, Yiu SM, Lau TC. Structure and Reactivity of One- and Two-Electron Oxidized Manganese(V) Nitrido Complexes Bearing a Bulky Corrole Ligand. J Am Chem Soc 2022; 144:7588-7593. [PMID: 35442033 DOI: 10.1021/jacs.2c02506] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]
Abstract
As a strategy to design stable but highly reactive metal nitrido species, we have synthesized a manganese(V) nitrido complex bearing a bulky corrole ligand, [MnV(N)(TTPPC)]- (1, TTPPC is the trianion of 5,10,15-Tris(2,4,6-triphenylphenyl)corrole). Complex 1 is readily oxidized by 1 equiv of Cp2Fe+ to give the neutral complex 2, which can be further oxidized by 1 equiv of [(p-Br-C6H4)3N•+][B(C6F5)4] to afford the cationic complex 3. All three complexes are stable in the solid state and in CH2Cl2 solution, and their molecular structures have been determined by X-ray crystallography. Spectroscopic and theoretical studies indicate that complexes 2 and 3 are best formulated as Mn(V) nitrido π-cation corrole [MnV(N)(TTPPC+•)] and Mn(V) nitrido π-dication corrole [MnV(N)(TTPPC2+)]+, respectively. Complex 3 is the most reactive N atom transfer reagent among isolated nitrido complexes; it reacts with PPh3 and styrene with second-order rate constants of 2.12 × 105 and 1.95 × 10-2 M-1 s-1, respectively, which are >107 faster than that of 2.
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Affiliation(s)
- Huatian Shi
- Department of Chemistry, City University of Hong Kong, Tat Chee Avenue, Kowloon Tong, Hong Kong999077, People's Republic of China
| | - Runhui Liang
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Pokfulam, Hong Kong999077, People's Republic of China
| | - David Lee Phillips
- Department of Chemistry, The University of Hong Kong, Pokfulam Road, Pokfulam, Hong Kong999077, People's Republic of China
| | - Hung Kay Lee
- Department of Chemistry, The Chinese University of Hong Kong, Central Avenue, Shatin, New Territories, Hong Kong999077, People's Republic of China
| | - Wai-Lun Man
- Department of Chemistry, Hong Kong Baptist University, Waterloo Road, Kowloon Tong, Hong Kong999077, People's Republic of China
| | - Kai-Chung Lau
- Department of Chemistry, City University of Hong Kong, Tat Chee Avenue, Kowloon Tong, Hong Kong999077, People's Republic of China
| | - Shek-Man Yiu
- Department of Chemistry, City University of Hong Kong, Tat Chee Avenue, Kowloon Tong, Hong Kong999077, People's Republic of China
| | - Tai-Chu Lau
- Department of Chemistry, City University of Hong Kong, Tat Chee Avenue, Kowloon Tong, Hong Kong999077, People's Republic of China
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19
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Jeon H, Kim J, Kim J, Cho KB, Hong S. An end-on bis(μ-hydroxido) dimanganese(II,III) azide complex for C-H bond and O-H bond activation reactions. Chem Commun (Camb) 2022; 58:4623-4626. [PMID: 35315854 DOI: 10.1039/d2cc01129h] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
We report the synthesis of an end-on dinuclear Mn(II) azide complex with two bridging azide ligands that served as a precursor for the formation of an end-on bis(μ-hydroxido) dinuclear Mn(II,III) azide complex upon oxidation by organic peroxide or peracids. Combined experimental and theoretical studies on the reactivity of the end-on bis(μ-hydroxido) dinuclear Mn(II,III) azide complex suggest that the reaction with substrates having weak C-H bond and O-H bond dissociation energy occurred via a H-atom abstraction reaction in a concerted manner.
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Affiliation(s)
- Hyeri Jeon
- Department of Chemistry, Sookmyung Women's University, Seoul 04310, Republic of Korea.
| | - Jisoo Kim
- Department of Chemistry, Sookmyung Women's University, Seoul 04310, Republic of Korea.
| | - Jin Kim
- Department of Chemistry, Sunchon National University, Suncheon 57922, Republic of Korea.
| | - Kyung-Bin Cho
- Department of Chemistry, Jeonbuk National University, Jeonju 54896, Republic of Korea.
| | - Seungwoo Hong
- Department of Chemistry, Sookmyung Women's University, Seoul 04310, Republic of Korea.
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20
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Affiliation(s)
- Milica Feldt
- Leibniz Institute for Catalysis: Leibniz-Institut fur Katalyse eV Theory & Catalysis Albert-Einstein-Str 29A 18059 Rostock GERMANY
| | - Quan Manh Phung
- Nagoya University: Nagoya Daigaku Department of Chemistry JAPAN
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21
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Sacramento JJD, Albert T, Siegler M, Moënne-Loccoz P, Goldberg DP. An Iron(III) Superoxide Corrole from Iron(II) and Dioxygen. Angew Chem Int Ed Engl 2022; 61:e202111492. [PMID: 34850509 PMCID: PMC8789326 DOI: 10.1002/anie.202111492] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 10/20/2021] [Indexed: 01/12/2023]
Abstract
A new structurally characterized ferrous corrole [FeII (ttppc)]- (1) binds one equivalent of dioxygen to form [FeIII (O2-. )(ttppc)]- (2). This complex exhibits a 16/18 O2 -isotope sensitive ν(O-O) stretch at 1128 cm-1 concomitantly with a single ν(Fe-O2 ) at 555 cm-1 , indicating it is an η1 -superoxo ("end-on") iron(III) complex. Complex 2 is the first well characterized Fe-O2 corrole, and mediates the following biologically relevant oxidation reactions: dioxygenation of an indole derivative, and H-atom abstraction from an activated O-H bond.
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Affiliation(s)
- Jireh Joy D Sacramento
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, MD, 21218, USA
| | - Therese Albert
- Department of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, OR, 97239-3098, USA
| | - Maxime Siegler
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, MD, 21218, USA
| | - Pierre Moënne-Loccoz
- Department of Chemical Physiology and Biochemistry, Oregon Health & Science University, Portland, OR, 97239-3098, USA
| | - David P Goldberg
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, MD, 21218, USA
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22
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Sacramento JJD, Albert T, Siegler M, Moënne‐Loccoz P, Goldberg DP. An Iron(III) Superoxide Corrole from Iron(II) and Dioxygen. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202111492] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Jireh Joy D. Sacramento
- Department of Chemistry The Johns Hopkins University 3400 North Charles Street Baltimore MD 21218 USA
| | - Therese Albert
- Department of Chemical Physiology and Biochemistry Oregon Health & Science University Portland OR 97239-3098 USA
| | - Maxime Siegler
- Department of Chemistry The Johns Hopkins University 3400 North Charles Street Baltimore MD 21218 USA
| | - Pierre Moënne‐Loccoz
- Department of Chemical Physiology and Biochemistry Oregon Health & Science University Portland OR 97239-3098 USA
| | - David P. Goldberg
- Department of Chemistry The Johns Hopkins University 3400 North Charles Street Baltimore MD 21218 USA
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23
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Hall JN, Li M, Bollini P. Light alkane oxidation over well-defined active sites in metal–organic framework materials. Catal Sci Technol 2022. [DOI: 10.1039/d1cy01876k] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
We review structure–catalytic property relationships for MOF materials used in the direct oxidation of light alkanes, focusing specifically on the elucidation of active site structures and probes for reaction mechanisms.
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Affiliation(s)
- Jacklyn N. Hall
- William A. Brookshire Department of Chemical and Biomolecular Engineering, University of Houston, Houston, TX 77204, USA
| | - Mengying Li
- William A. Brookshire Department of Chemical and Biomolecular Engineering, University of Houston, Houston, TX 77204, USA
| | - Praveen Bollini
- William A. Brookshire Department of Chemical and Biomolecular Engineering, University of Houston, Houston, TX 77204, USA
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24
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Verma PK, Sawant SD. Unravelling reaction selectivities via bio-inspired porphyrinoid tetradentate frameworks. Coord Chem Rev 2022. [DOI: 10.1016/j.ccr.2021.214239] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
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25
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Puls F, Seewald F, Grinenko V, Klauß H, Knölker H. Mechanistic Studies on the Hexadecafluorophthalocyanine-Iron-Catalyzed Wacker-Type Oxidation of Olefins to Ketones*. Chemistry 2021; 27:16776-16787. [PMID: 34546596 PMCID: PMC9298363 DOI: 10.1002/chem.202102848] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2021] [Indexed: 12/15/2022]
Abstract
The hexadecafluorophthalocyanine-iron complex FePcF16 was recently shown to convert olefins into ketones in the presence of stoichiometric amounts of triethylsilane in ethanol at room temperature under an oxygen atmosphere. Herein, we describe an extensive mechanistic investigation for the conversion of 2-vinylnaphthalene into 2-acetylnaphthalene as model reaction. A variety of studies including deuterium- and 18 O2 -labeling experiments, ESI-MS, and 57 Fe Mössbauer spectroscopy were performed to identify the intermediates involved in the catalytic cycle of the oxidation process. Finally, a detailed and well-supported reaction mechanism for the FePcF16 -catalyzed Wacker-type oxidation is proposed.
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Affiliation(s)
- Florian Puls
- Fakultät ChemieTechnische Universität DresdenBergstraße 6601069DresdenGermany
| | - Felix Seewald
- Institute of Solid State and Materials Physics Fakultät PhysikTechnische Universität DresdenZellescher Weg 1601069DresdenGermany
| | - Vadim Grinenko
- Institute of Solid State and Materials Physics Fakultät PhysikTechnische Universität DresdenZellescher Weg 1601069DresdenGermany
| | - Hans‐Henning Klauß
- Institute of Solid State and Materials Physics Fakultät PhysikTechnische Universität DresdenZellescher Weg 1601069DresdenGermany
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26
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Farley GW, Siegler MA, Goldberg DP. Halogen Transfer to Carbon Radicals by High-Valent Iron Chloride and Iron Fluoride Corroles. Inorg Chem 2021; 60:17288-17302. [PMID: 34709780 DOI: 10.1021/acs.inorgchem.1c02666] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Abstract
High-valent iron halide corroles were examined to determine their reactivity with carbon radicals and their ability to undergo radical rebound-like processes. Beginning with Fe(Cl)(ttppc) (1) (ttppc = 5,10,15-tris(2,4,6-triphenylphenyl)corrolato3-), the new iron corroles Fe(OTf)(ttppc) (2), Fe(OTf)(ttppc)(AgOTf) (3), and Fe(F)(ttppc) (4) were synthesized. Complexes 3 and 4 are the first iron triflate and iron fluoride corroles to be structurally characterized by single crystal X-ray diffraction. The structure of 3 reveals an AgI-pyrrole (η2-π) interaction. The Fe(Cl)(ttppc) and Fe(F)(ttppc) complexes undergo halogen transfer to triarylmethyl radicals, and kinetic analysis of the reaction between (p-OMe-C6H4)3C• and 1 gave k = 1.34(3) × 103 M-1 s-1 at 23 °C and 2.2(2) M-1 s-1 at -60 °C, ΔH⧧ = +9.8(3) kcal mol-1, and ΔS⧧ = -14(1) cal mol-1 K-1 through an Eyring analysis. Complex 4 is significantly more reactive, giving k = 1.16(6) × 105 M-1 s-1 at 23 °C. The data point to a concerted mechanism and show the trend X = F- > Cl- > OH- for Fe(X)(ttppc). This study provides mechanistic insights into halogen rebound for an iron porphyrinoid complex.
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Affiliation(s)
- Geoffrey W Farley
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Maxime A Siegler
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - David P Goldberg
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
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27
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Kamel EM, Lamsabhi AM. Water biocatalytic effect attenuates cytochrome P450-mediated carcinogenicity of diethylnitrosamine: A computational insight. Org Biomol Chem 2021; 19:9031-9042. [PMID: 34613323 DOI: 10.1039/d1ob01439k] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The mechanism-based mutagenicity and carcinogenicity of diethylnitrosamine (DEN) are believed to act through interactions with cytochrome P450 (P450) enzymes. DFT calculations to explore the conceivable mechanisms underlying the reaction of P450 with DEN with and without water as a biocatalyst were performed. The results shed light on the biocatalytic role of water in lowering the H-abstraction energy barriers because of the electrostatic effect driven by hydrogen bonding. Our DFT analysis revealed how metabolites are formed in the dealkylation (toxification) and denitrosation (detoxification) pathways. Also, our findings uncovered the active position of DEN vulnerable to P450 interactions. Two factors control the toxification and detoxification rates: the stability of denitrosation products and the HS rebound barrier of the α-pathway. Thus, water biocatalytic attenuation of DEN carcinogenicity was attained by stabilizing denitrosation products and slowing the α-HS rebound process. Docking and MD simulations were performed to assess the binding modes of DEN to P450's active site and to inspect the denitrosation and dealkylation processes, respectively.
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Affiliation(s)
- Emadeldin M Kamel
- Chemistry Department, Faculty of Science, Beni-Suef University, Beni-Suef 62514, Egypt
- Departamento de Química, Módulo 13, Universidad Autónoma de Madrid, Campus de Excelencia UAM-CSIC Cantoblanco, 28049 Madrid, Spain.
| | - Al Mokhtar Lamsabhi
- Departamento de Química, Módulo 13, Universidad Autónoma de Madrid, Campus de Excelencia UAM-CSIC Cantoblanco, 28049 Madrid, Spain.
- Institute for Advanced Research in Chemical Sciences (IAdChem), Universidad Autónoma de Madrid, 28049 Madrid, Spain
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28
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Lee JL, Ross DL, Barman SK, Ziller JW, Borovik AS. C-H Bond Cleavage by Bioinspired Nonheme Metal Complexes. Inorg Chem 2021; 60:13759-13783. [PMID: 34491738 DOI: 10.1021/acs.inorgchem.1c01754] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/31/2022]
Abstract
The functionalization of C-H bonds is one of the most challenging transformations in synthetic chemistry. In biology, these processes are well-known and are achieved with a variety of metalloenzymes, many of which contain a single metal center within their active sites. The most well studied are those with Fe centers, and the emerging experimental data show that high-valent iron oxido species are the intermediates responsible for cleaving the C-H bond. This Forum Article describes the state of this field with an emphasis on nonheme Fe enzymes and current experimental results that provide insights into the properties that make these species capable of C-H bond cleavage. These parameters are also briefly considered in regard to manganese oxido complexes and Cu-containing metalloenzymes. Synthetic iron oxido complexes are discussed to highlight their utility as spectroscopic and mechanistic probes and reagents for C-H bond functionalization. Avenues for future research are also examined.
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Affiliation(s)
- Justin L Lee
- Department of Chemistry, University of California-Irvine, 1102 Natural Sciences II, Irvine, California 92697, United States
| | - Dolores L Ross
- Department of Chemistry, University of California-Irvine, 1102 Natural Sciences II, Irvine, California 92697, United States
| | - Suman K Barman
- Department of Chemistry, University of California-Irvine, 1102 Natural Sciences II, Irvine, California 92697, United States
| | - Joseph W Ziller
- Department of Chemistry, University of California-Irvine, 1102 Natural Sciences II, Irvine, California 92697, United States
| | - A S Borovik
- Department of Chemistry, University of California-Irvine, 1102 Natural Sciences II, Irvine, California 92697, United States
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29
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Dobbelaar E, Rauber C, Bonck T, Kelm H, Schmitz M, de Waal Malefijt ME, Klein JEMN, Krüger HJ. Combining Structural with Functional Model Properties in Iron Synthetic Analogue Complexes for the Active Site in Rabbit Lipoxygenase. J Am Chem Soc 2021; 143:13145-13155. [PMID: 34383499 DOI: 10.1021/jacs.1c04422] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
Abstract
Iron complexes that model the structural and functional properties of the active iron site in rabbit lipoxygenase are described. The ligand sphere of the mononuclear pseudo-octahedral cis-(carboxylato)(hydroxo)iron(III) complex, which is completed by a tetraazamacrocyclic ligand, reproduces the first coordination shell of the active site in the enzyme. In addition, two corresponding iron(II) complexes are presented that differ in the coordination of a water molecule. In their structural and electronic properties, both the (hydroxo)iron(III) and the (aqua)iron(II) complex reflect well the only two essential states found in the enzymatic mechanism of peroxidation of polyunsaturated fatty acids. Furthermore, the ferric complex is shown to undergo hydrogen atom abstraction reactions with O-H and C-H bonds of suitable substrates, and the bond dissociation free energy of the coordinated water ligand of the ferrous complex is determined to be 72.4 kcal·mol-1. Theoretical investigations of the reactivity support a concerted proton-coupled electron transfer mechanism in close analogy to the initial step in the enzymatic mechanism. The propensity of the (hydroxo)iron(III) complex to undergo H atom abstraction reactions is the basis for its catalytic function in the aerobic peroxidation of 2,4,6-tri(tert-butyl)phenol and its role as a radical initiator in the reaction of dihydroanthracene with oxygen.
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Affiliation(s)
- Emiel Dobbelaar
- Department of Chemistry, Technische Universität Kaiserslautern, 67663 Kaiserslautern, Germany
| | - Christian Rauber
- Department of Chemistry, Technische Universität Kaiserslautern, 67663 Kaiserslautern, Germany
| | - Thorsten Bonck
- Department of Chemistry, Technische Universität Kaiserslautern, 67663 Kaiserslautern, Germany
| | - Harald Kelm
- Department of Chemistry, Technische Universität Kaiserslautern, 67663 Kaiserslautern, Germany
| | - Markus Schmitz
- Department of Chemistry, Technische Universität Kaiserslautern, 67663 Kaiserslautern, Germany
| | - Matina Eloïse de Waal Malefijt
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, Faculty of Science and Engineering, University of Groningen, Nijenborgh 9, 9747 AG Groningen, The Netherlands
| | - Johannes E M N Klein
- Molecular Inorganic Chemistry, Stratingh Institute for Chemistry, Faculty of Science and Engineering, University of Groningen, Nijenborgh 9, 9747 AG Groningen, The Netherlands
| | - Hans-Jörg Krüger
- Department of Chemistry, Technische Universität Kaiserslautern, 67663 Kaiserslautern, Germany
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30
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Mukherjee G, Satpathy JK, Bagha UK, Mubarak MQE, Sastri CV, de Visser SP. Inspiration from Nature: Influence of Engineered Ligand Scaffolds and Auxiliary Factors on the Reactivity of Biomimetic Oxidants. ACS Catal 2021. [DOI: 10.1021/acscatal.1c01993] [Citation(s) in RCA: 24] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Gourab Mukherjee
- Department of Chemistry, Indian Institute of Technology Guwahati, 781039, Assam, India
| | - Jagnyesh K. Satpathy
- Department of Chemistry, Indian Institute of Technology Guwahati, 781039, Assam, India
| | - Umesh K. Bagha
- Department of Chemistry, Indian Institute of Technology Guwahati, 781039, Assam, India
| | - M. Qadri E. Mubarak
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom
- Fakulti Sains dan Teknologi, Universiti Sains Islam Malaysia, Bandar Baru Nilai, 71800 Nilai, Negeri Sembilan Malaysia
| | - Chivukula V. Sastri
- Department of Chemistry, Indian Institute of Technology Guwahati, 781039, Assam, India
| | - Sam P. de Visser
- Department of Chemistry, Indian Institute of Technology Guwahati, 781039, Assam, India
- Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom
- Department of Chemical Engineering and Analytical Science, The University of Manchester, Oxford Road, Manchester M13 9PL, United Kingdom
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31
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Kwon H, Basran J, Pathak C, Hussain M, Freeman SL, Fielding AJ, Bailey AJ, Stefanou N, Sparkes HA, Tosha T, Yamashita K, Hirata K, Murakami H, Ueno G, Ago H, Tono K, Yamamoto M, Sawai H, Shiro Y, Sugimoto H, Raven EL, Moody PCE. XFEL Crystal Structures of Peroxidase Compound II. Angew Chem Int Ed Engl 2021; 60:14578-14585. [PMID: 33826799 PMCID: PMC8251747 DOI: 10.1002/anie.202103010] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Indexed: 01/07/2023]
Abstract
Oxygen activation in all heme enzymes requires the formation of high oxidation states of iron, usually referred to as ferryl heme. There are two known intermediates: Compound I and Compound II. The nature of the ferryl heme-and whether it is an FeIV =O or FeIV -OH species-is important for controlling reactivity across groups of heme enzymes. The most recent evidence for Compound I indicates that the ferryl heme is an unprotonated FeIV =O species. For Compound II, the nature of the ferryl heme is not unambiguously established. Here, we report 1.06 Å and 1.50 Å crystal structures for Compound II intermediates in cytochrome c peroxidase (CcP) and ascorbate peroxidase (APX), collected using the X-ray free electron laser at SACLA. The structures reveal differences between the two peroxidases. The iron-oxygen bond length in CcP (1.76 Å) is notably shorter than in APX (1.87 Å). The results indicate that the ferryl species is finely tuned across Compound I and Compound II species in closely related peroxidase enzymes. We propose that this fine-tuning is linked to the functional need for proton delivery to the heme.
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Affiliation(s)
- Hanna Kwon
- School of ChemistryUniversity of BristolCantock's CloseBristolBS8 1TSUK
| | - Jaswir Basran
- Department of Molecular and Cell Biology and Leicester Institute of Structural and Chemical BiologyUniversity of LeicesterLancaster RoadLeicesterLE1 7RHUK
| | - Chinar Pathak
- Department of Molecular and Cell Biology and Leicester Institute of Structural and Chemical BiologyUniversity of LeicesterLancaster RoadLeicesterLE1 7RHUK
| | - Mahdi Hussain
- Department of Molecular and Cell Biology and Leicester Institute of Structural and Chemical BiologyUniversity of LeicesterLancaster RoadLeicesterLE1 7RHUK
| | - Samuel L. Freeman
- School of ChemistryUniversity of BristolCantock's CloseBristolBS8 1TSUK
| | - Alistair J. Fielding
- Centre for Natural Products Discovery, Pharmacy and Biomolecular SciencesLiverpool John Moores UniversityJames Parsons Building, Byrom StreetLiverpoolL3 3AFUK
| | - Anna J. Bailey
- School of ChemistryUniversity of BristolCantock's CloseBristolBS8 1TSUK
| | - Natalia Stefanou
- School of ChemistryUniversity of BristolCantock's CloseBristolBS8 1TSUK
| | - Hazel A. Sparkes
- School of ChemistryUniversity of BristolCantock's CloseBristolBS8 1TSUK
| | | | - Keitaro Yamashita
- RIKEN SPring-8 Center1-1-1 KoutoSayoHyogo679-5148Japan
- Present address: MRC Laboratory of Molecular BiologyFrancis Crick Avenue, Cambridge Biomedical CampusCambridgeCB1 0QHUK
| | - Kunio Hirata
- RIKEN SPring-8 Center1-1-1 KoutoSayoHyogo679-5148Japan
| | - Hironori Murakami
- Japan Synchrotron Radiation Research Institute1-1-1 KoutoSayoHyogo679-5198Japan
| | - Go Ueno
- RIKEN SPring-8 Center1-1-1 KoutoSayoHyogo679-5148Japan
| | - Hideo Ago
- RIKEN SPring-8 Center1-1-1 KoutoSayoHyogo679-5148Japan
| | - Kensuke Tono
- Japan Synchrotron Radiation Research Institute1-1-1 KoutoSayoHyogo679-5198Japan
| | | | - Hitomi Sawai
- Graduate School of Life ScienceUniversity of Hyogo3-2-1 Kouto, Kamigori-choAko-gunHyogo678-1297Japan
| | - Yoshitsugu Shiro
- Graduate School of Life ScienceUniversity of Hyogo3-2-1 Kouto, Kamigori-choAko-gunHyogo678-1297Japan
| | | | - Emma L. Raven
- School of ChemistryUniversity of BristolCantock's CloseBristolBS8 1TSUK
| | - Peter C. E. Moody
- Department of Molecular and Cell Biology and Leicester Institute of Structural and Chemical BiologyUniversity of LeicesterLancaster RoadLeicesterLE1 7RHUK
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32
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Kwon H, Basran J, Pathak C, Hussain M, Freeman SL, Fielding AJ, Bailey AJ, Stefanou N, Sparkes HA, Tosha T, Yamashita K, Hirata K, Murakami H, Ueno G, Ago H, Tono K, Yamamoto M, Sawai H, Shiro Y, Sugimoto H, Raven EL, Moody PCE. XFEL Crystal Structures of Peroxidase Compound II. ANGEWANDTE CHEMIE (WEINHEIM AN DER BERGSTRASSE, GERMANY) 2021; 133:14699-14706. [PMID: 38505375 PMCID: PMC10947387 DOI: 10.1002/ange.202103010] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Indexed: 03/21/2024]
Abstract
Oxygen activation in all heme enzymes requires the formation of high oxidation states of iron, usually referred to as ferryl heme. There are two known intermediates: Compound I and Compound II. The nature of the ferryl heme-and whether it is an FeIV=O or FeIV-OH species-is important for controlling reactivity across groups of heme enzymes. The most recent evidence for Compound I indicates that the ferryl heme is an unprotonated FeIV=O species. For Compound II, the nature of the ferryl heme is not unambiguously established. Here, we report 1.06 Å and 1.50 Å crystal structures for Compound II intermediates in cytochrome c peroxidase (CcP) and ascorbate peroxidase (APX), collected using the X-ray free electron laser at SACLA. The structures reveal differences between the two peroxidases. The iron-oxygen bond length in CcP (1.76 Å) is notably shorter than in APX (1.87 Å). The results indicate that the ferryl species is finely tuned across Compound I and Compound II species in closely related peroxidase enzymes. We propose that this fine-tuning is linked to the functional need for proton delivery to the heme.
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Affiliation(s)
- Hanna Kwon
- School of ChemistryUniversity of BristolCantock's CloseBristolBS8 1TSUK
| | - Jaswir Basran
- Department of Molecular and Cell Biology and Leicester Institute of Structural and Chemical BiologyUniversity of LeicesterLancaster RoadLeicesterLE1 7RHUK
| | - Chinar Pathak
- Department of Molecular and Cell Biology and Leicester Institute of Structural and Chemical BiologyUniversity of LeicesterLancaster RoadLeicesterLE1 7RHUK
| | - Mahdi Hussain
- Department of Molecular and Cell Biology and Leicester Institute of Structural and Chemical BiologyUniversity of LeicesterLancaster RoadLeicesterLE1 7RHUK
| | - Samuel L. Freeman
- School of ChemistryUniversity of BristolCantock's CloseBristolBS8 1TSUK
| | - Alistair J. Fielding
- Centre for Natural Products Discovery, Pharmacy and Biomolecular SciencesLiverpool John Moores UniversityJames Parsons Building, Byrom StreetLiverpoolL3 3AFUK
| | - Anna J. Bailey
- School of ChemistryUniversity of BristolCantock's CloseBristolBS8 1TSUK
| | - Natalia Stefanou
- School of ChemistryUniversity of BristolCantock's CloseBristolBS8 1TSUK
| | - Hazel A. Sparkes
- School of ChemistryUniversity of BristolCantock's CloseBristolBS8 1TSUK
| | | | - Keitaro Yamashita
- RIKEN SPring-8 Center1-1-1 KoutoSayoHyogo679-5148Japan
- Present address: MRC Laboratory of Molecular BiologyFrancis Crick Avenue, Cambridge Biomedical CampusCambridgeCB1 0QHUK
| | - Kunio Hirata
- RIKEN SPring-8 Center1-1-1 KoutoSayoHyogo679-5148Japan
| | - Hironori Murakami
- Japan Synchrotron Radiation Research Institute1-1-1 KoutoSayoHyogo679-5198Japan
| | - Go Ueno
- RIKEN SPring-8 Center1-1-1 KoutoSayoHyogo679-5148Japan
| | - Hideo Ago
- RIKEN SPring-8 Center1-1-1 KoutoSayoHyogo679-5148Japan
| | - Kensuke Tono
- Japan Synchrotron Radiation Research Institute1-1-1 KoutoSayoHyogo679-5198Japan
| | | | - Hitomi Sawai
- Graduate School of Life ScienceUniversity of Hyogo3-2-1 Kouto, Kamigori-choAko-gunHyogo678-1297Japan
| | - Yoshitsugu Shiro
- Graduate School of Life ScienceUniversity of Hyogo3-2-1 Kouto, Kamigori-choAko-gunHyogo678-1297Japan
| | | | - Emma L. Raven
- School of ChemistryUniversity of BristolCantock's CloseBristolBS8 1TSUK
| | - Peter C. E. Moody
- Department of Molecular and Cell Biology and Leicester Institute of Structural and Chemical BiologyUniversity of LeicesterLancaster RoadLeicesterLE1 7RHUK
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33
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Mn-corrolazine-based 2D-nanocatalytic material with single Mn atoms for catalytic oxidation of alkane to alcohol. CHINESE JOURNAL OF CATALYSIS 2021. [DOI: 10.1016/s1872-2067(20)63707-x] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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34
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Puls F, Linke P, Kataeva O, Knölker HJ. Iron-Catalyzed Wacker-type Oxidation of Olefins at Room Temperature with 1,3-Diketones or Neocuproine as Ligands*. Angew Chem Int Ed Engl 2021; 60:14083-14090. [PMID: 33856090 PMCID: PMC8251641 DOI: 10.1002/anie.202103222] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2021] [Indexed: 11/11/2022]
Abstract
Herein, we describe a convenient and general method for the oxidation of olefins to ketones using either tris(dibenzoylmethanato)iron(III) [Fe(dbm)3 ] or a combination of iron(II) chloride and neocuproine (2,9-dimethyl-1,10-phenanthroline) as catalysts and phenylsilane (PhSiH3 ) as additive. All reactions proceed efficiently at room temperature using air as sole oxidant. This transformation has been applied to a variety of substrates, is operationally simple, proceeds under mild reaction conditions, and shows a high functional-group tolerance. The ketones are formed smoothly in up to 97 % yield and with 100 % regioselectivity, while the corresponding alcohols were observed as by-products. Labeling experiments showed that an incorporated hydrogen atom originates from the phenylsilane. The oxygen atom of the ketone as well as of the alcohol derives from the ambient atmosphere.
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Affiliation(s)
- Florian Puls
- Fakultät Chemie und Lebensmittelchemie, Technische Universität Dresden, Bergstrasse 66, 01069, Dresden, Germany
| | - Philipp Linke
- Fakultät Chemie und Lebensmittelchemie, Technische Universität Dresden, Bergstrasse 66, 01069, Dresden, Germany
| | - Olga Kataeva
- A. E. Arbuzov Institute of Organic and Physical Chemistry, FRC Kazan Scientific Center, Russian Academy of Sciences, Arbuzov Str. 8, Kazan, 420088, Russia
| | - Hans-Joachim Knölker
- Fakultät Chemie und Lebensmittelchemie, Technische Universität Dresden, Bergstrasse 66, 01069, Dresden, Germany
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35
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Puls F, Linke P, Kataeva O, Knölker H. Iron‐Catalyzed Wacker‐type Oxidation of Olefins at Room Temperature with 1,3‐Diketones or Neocuproine as Ligands**. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202103222] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Florian Puls
- Fakultät Chemie und Lebensmittelchemie Technische Universität Dresden Bergstrasse 66 01069 Dresden Germany
| | - Philipp Linke
- Fakultät Chemie und Lebensmittelchemie Technische Universität Dresden Bergstrasse 66 01069 Dresden Germany
| | - Olga Kataeva
- A. E. Arbuzov Institute of Organic and Physical Chemistry FRC Kazan Scientific Center Russian Academy of Sciences Arbuzov Str. 8 Kazan 420088 Russia
| | - Hans‐Joachim Knölker
- Fakultät Chemie und Lebensmittelchemie Technische Universität Dresden Bergstrasse 66 01069 Dresden Germany
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36
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Funk P, Richrath RB, Bohle F, Grimme S, Gansäuer A. Oxidation Under Reductive Conditions: From Benzylic Ethers to Acetals with Perfect Atom-Economy by Titanocene(III) Catalysis. Angew Chem Int Ed Engl 2021; 60:5482-5488. [PMID: 33245820 PMCID: PMC7986230 DOI: 10.1002/anie.202013561] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/08/2020] [Indexed: 12/19/2022]
Abstract
Described here is a titanocene-catalyzed reaction for the synthesis of acetals and hemiaminals from benzylic ethers and benzylic amines, respectively, with pendant epoxides. The reaction proceeds by catalysis in single-electron steps. The oxidative addition comprises an epoxide opening. An H-atom transfer, to generate a benzylic radical, serves as a radical translocation step, and an organometallic oxygen rebound as a reductive elimination. The reaction mechanism was studied by high-level dispersion corrected hybrid functional DFT with implicit solvation. The low-energy conformational space was searched by the efficient CREST program. The stereoselectivity was deduced from the lowest lying benzylic radical structures and their conformations are controlled by hyperconjugative interactions and steric interactions between the titanocene catalyst and the aryl groups of the substrate. An interesting mechanistic aspect is that the oxidation of the benzylic center occurs under reducing conditions.
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Affiliation(s)
- Pierre Funk
- Kekulé-Institut für Organische Chemie und BiochemieUniversität BonnGerhard Domagk-Str. 153121BonnGermany
| | - Ruben B. Richrath
- Kekulé-Institut für Organische Chemie und BiochemieUniversität BonnGerhard Domagk-Str. 153121BonnGermany
| | - Fabian Bohle
- Mulliken Center for Theoretical ChemistryInstitut für Physikalische und Theoretische ChemieUniversität BonnBeringstraße 453115BonnGermany
| | - Stefan Grimme
- Mulliken Center for Theoretical ChemistryInstitut für Physikalische und Theoretische ChemieUniversität BonnBeringstraße 453115BonnGermany
| | - Andreas Gansäuer
- Kekulé-Institut für Organische Chemie und BiochemieUniversität BonnGerhard Domagk-Str. 153121BonnGermany
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37
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Fukui N, Ueno K, Hada M, Fujii H. meso-Substitution Activates Oxoiron(IV) Porphyrin π-Cation Radical Complex More Than Pyrrole-β-Substitution for Atom Transfer Reaction. Inorg Chem 2021; 60:3207-3217. [DOI: 10.1021/acs.inorgchem.0c03548] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Nami Fukui
- Department of Chemistry, Graduate School of Humanities and Sciences, Nara Women’s University, Kitauoyanishi, Nara 630-8506, Japan
| | - Kanako Ueno
- Department of Chemistry, Graduate School of Humanities and Sciences, Nara Women’s University, Kitauoyanishi, Nara 630-8506, Japan
| | - Masahiko Hada
- Department of Chemistry, Graduate School of Science, Tokyo Metropolitan University, 1-1 Minamiosawa, Hachioji 192-0397, Japan
| | - Hiroshi Fujii
- Department of Chemistry, Graduate School of Humanities and Sciences, Nara Women’s University, Kitauoyanishi, Nara 630-8506, Japan
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38
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Investigating reactivity and electronic structure of copper(II)-polypyridyl complexes and hydrogen peroxide. Inorganica Chim Acta 2021. [DOI: 10.1016/j.ica.2020.120168] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
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39
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Keshari K, Bera M, Velasco L, Munshi S, Gupta G, Moonshiram D, Paria S. Characterization and reactivity study of non-heme high-valent iron-hydroxo complexes. Chem Sci 2021; 12:4418-4424. [PMID: 34163706 PMCID: PMC8179568 DOI: 10.1039/d0sc07054h] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022] Open
Abstract
A terminal FeIIIOH complex, [FeIII(L)(OH)]2− (1), has been synthesized and structurally characterized (H4L = 1,2-bis(2-hydroxy-2-methylpropanamido)benzene). The oxidation reaction of 1 with one equiv. of tris(4-bromophenyl)ammoniumyl hexachloroantimonate (TBAH) or ceric ammonium nitrate (CAN) in acetonitrile at −45 °C results in the formation of a FeIIIOH ligand radical complex, [FeIII(L˙)(OH)]− (2), which is hereby characterized by UV-visible, 1H nuclear magnetic resonance, electron paramagnetic resonance, and X-ray absorption spectroscopy techniques. The reaction of 2 with a triphenylcarbon radical further gives triphenylmethanol and mimics the so-called oxygen rebound step of Cpd II of cytochrome P450. Furthermore, the reaction of 2 was explored with different 4-substituted-2,6-di-tert-butylphenols. Based on kinetic analysis, a hydrogen atom transfer (HAT) mechanism has been established. A pKa value of 19.3 and a BDFE value of 78.2 kcal/mol have been estimated for complex 2. One-electron oxidation of an FeIII–OH complex (1) results in the formation of a FeIII–OH ligand radical complex (2). Its reaction with (C6H5)3C˙ results in the formation of (C6H5)3COH, which is a functional mimic of compound II of cytochrome P450.![]()
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Affiliation(s)
- Kritika Keshari
- Department of Chemistry, Indian Institute of Technology Delhi Hauz Khas New Delhi 110016 India
| | - Moumita Bera
- Department of Chemistry, Indian Institute of Technology Delhi Hauz Khas New Delhi 110016 India
| | - Lucía Velasco
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA Nanociencia Calle Faraday, 9 28049 Madrid Spain
| | - Sandip Munshi
- School of Chemical Sciences, Indian Association for the Cultivation of Science 2A & 2B Raja S. C. Mullick Road, Jadavpur Kolkata 700032 India
| | - Geetika Gupta
- Department of Chemistry, Indian Institute of Technology Delhi Hauz Khas New Delhi 110016 India
| | - Dooshaye Moonshiram
- Instituto Madrileño de Estudios Avanzados en Nanociencia (IMDEA Nanociencia Calle Faraday, 9 28049 Madrid Spain
| | - Sayantan Paria
- Department of Chemistry, Indian Institute of Technology Delhi Hauz Khas New Delhi 110016 India
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40
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Funk P, Richrath RB, Bohle F, Grimme S, Gansäuer A. Oxidation Under Reductive Conditions: From Benzylic Ethers to Acetals with Perfect Atom‐Economy by Titanocene(III) Catalysis. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202013561] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]
Affiliation(s)
- Pierre Funk
- Kekulé-Institut für Organische Chemie und Biochemie Universität Bonn Gerhard Domagk-Str. 1 53121 Bonn Germany
| | - Ruben B. Richrath
- Kekulé-Institut für Organische Chemie und Biochemie Universität Bonn Gerhard Domagk-Str. 1 53121 Bonn Germany
| | - Fabian Bohle
- Mulliken Center for Theoretical Chemistry Institut für Physikalische und Theoretische Chemie Universität Bonn Beringstraße 4 53115 Bonn Germany
| | - Stefan Grimme
- Mulliken Center for Theoretical Chemistry Institut für Physikalische und Theoretische Chemie Universität Bonn Beringstraße 4 53115 Bonn Germany
| | - Andreas Gansäuer
- Kekulé-Institut für Organische Chemie und Biochemie Universität Bonn Gerhard Domagk-Str. 1 53121 Bonn Germany
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41
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Yadav V, Siegler MA, Goldberg DP. Temperature-Dependent Reactivity of a Non-heme Fe III(OH)(SR) Complex: Relevance to Isopenicillin N Synthase. J Am Chem Soc 2021; 143:46-52. [PMID: 33356198 DOI: 10.1021/jacs.0c09688] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Non-heme iron complexes with cis-FeIII(OH)(SAr/OAr) coordination were isolated and examined for their reactivity with a tertiary carbon radical. The sulfur-ligated complex shows a temperature dependence on •OH versus ArS• transfer, whereas the oxygen-ligated complex does not. These results provide the first working model for C-S bond formation in isopenicillin N synthase and indicate that kinetic control may be a key factor in the selectivity of non-heme iron "rebound" processes.
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Affiliation(s)
- Vishal Yadav
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Maxime A Siegler
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - David P Goldberg
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
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42
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Alvarado JG, Cummins DC, Diaconescu A, Siegler MA, Goldberg DP. The Selective Monobromination of a Highly Sterically Encumbered Corrole: Structural and Spectroscopic Properties of Fe(Cl)(2-Bromo-5,10,15-tris(triphenyl)phenyl corrole). J PORPHYR PHTHALOCYA 2021; 25:1176-1185. [PMID: 36213143 PMCID: PMC9536772 DOI: 10.1142/s1088424621501169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 09/06/2024]
Abstract
The corrole ligand serves as a versatile tri-anionic, macrocyclic platform on which to model biological catalytic systems, as well as to effect mechanistically challenging chemical transformations. Here in we describe the synthesis, structure, and characterization of an isomerically pure corrole ligand, selectively mono-brominated at the β-carbon position adjacent to the corrole C-C bond (2-C) and produced in relatively high yields, as well as its iron chloride complex. Analysis of the iron metalated complex by cyclic voltammetry shows that the bromine being present on the ligand resulted in anodic shifts of +93 and +63 mV for first oxidation and first reduction of the complex respectively. The Mossbauer spectrum of the iron metalated complex shows negligible change relative to the non-brominated analog, indicating the presence of the halide substituent predominantly effects the orbitals of the ligand rather than the metal.
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Affiliation(s)
- Jessica G Alvarado
- Department of Chemistry, The Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218, United States
| | - Daniel C Cummins
- Department of Chemistry, The Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218, United States
| | - Andrada Diaconescu
- Department of Chemistry, The Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218, United States
| | - Maxime A Siegler
- Department of Chemistry, The Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218, United States
| | - David P Goldberg
- Department of Chemistry, The Johns Hopkins University, 3400 N. Charles Street, Baltimore, Maryland 21218, United States
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43
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Musselman BW, Lehnert N. Bridging and axial carbene binding modes in cobalt corrole complexes: effect on carbene transfer. Chem Commun (Camb) 2020; 56:14881-14884. [PMID: 33174882 DOI: 10.1039/d0cc07073d] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Abstract
Catalytically relevant intermediates in carbene transfer reactions from a diazo precursor were investigated using cobalt corrole complexes. Two divergent mechanisms are proposed depending on the oxidation state of the cobalt center. Mechanistically driven factors for the usage of cobalt corroles in carbene transfer reactions are discussed.
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Affiliation(s)
- Bradley W Musselman
- Department of Chemistry and Department of Biophysics, University of Michigan, Ann Arbor, MI 48109, USA.
| | - Nicolai Lehnert
- Department of Chemistry and Department of Biophysics, University of Michigan, Ann Arbor, MI 48109, USA.
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44
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Cummins DC, Alvarado JG, Zaragoza JPT, Effendy Mubarak MQ, Lin YT, de Visser SP, Goldberg DP. Hydroxyl Transfer to Carbon Radicals by Mn(OH) vs Fe(OH) Corrole Complexes. Inorg Chem 2020; 59:16053-16064. [PMID: 33047596 DOI: 10.1021/acs.inorgchem.0c02640] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Abstract
The transfer of •OH from metal-hydroxo species to carbon radicals (R•) to give hydroxylated products (ROH) is a fundamental process in metal-mediated heme and nonheme C-H bond oxidations. This step, often referred to as the hydroxyl "rebound" step, is typically very fast, making direct study of this process challenging if not impossible. In this report, we describe the reactions of the synthetic models M(OH)(ttppc) (M = Fe (1), Mn (3); ttppc = 5,10,15-tris(2,4,6-triphenyl)phenyl corrolato3-) with a series of triphenylmethyl carbon radical (R•) derivatives ((4-X-C6H4)3C•; X = OMe, tBu, Ph, Cl, CN) to give the one-electron reduced MIII(ttppc) complexes and ROH products. Rate constants for 3 for the different radicals ranged from 11.4(1) to 58.4(2) M-1 s-1, as compared to those for 1, which fall between 0.74(2) and 357(4) M-1 s-1. Linear correlations for Hammett and Marcus plots for both Mn and Fe were observed, and the small magnitudes of the slopes for both correlations imply a concerted •OH transfer reaction for both metals. Eyring analyses of reactions for 1 and 3 with (4-X-C6H4)3C• (X = tBu, CN) also give good linear correlations, and a comparison of the resulting activation parameters highlight the importance of entropy in these •OH transfer reactions. Density functional theory calculations of the reaction profiles show a concerted process with one transition state for all radicals investigated and help to explain the electronic features of the OH rebound process.
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Affiliation(s)
- Daniel C Cummins
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Jessica G Alvarado
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Jan Paulo T Zaragoza
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Muhammad Qadri Effendy Mubarak
- Manchester Institute of Biotechnology and Department of Chemical Engineering and Analytical Science, The University of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom
| | - Yen-Ting Lin
- Manchester Institute of Biotechnology and Department of Chemical Engineering and Analytical Science, The University of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom
| | - Sam P de Visser
- Manchester Institute of Biotechnology and Department of Chemical Engineering and Analytical Science, The University of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom
| | - David P Goldberg
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
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45
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Mayfield JR, Grotemeyer EN, Jackson TA. Concerted proton-electron transfer reactions of manganese-hydroxo and manganese-oxo complexes. Chem Commun (Camb) 2020; 56:9238-9255. [PMID: 32578605 PMCID: PMC7429365 DOI: 10.1039/d0cc01201g] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Abstract
The enzymes manganese superoxide dismutase and manganese lipoxygenase use MnIII-hydroxo centres to mediate proton-coupled electron transfer (PCET) reactions with substrate. As manganese is earth-abundant and inexpensive, manganese catalysts are of interest for synthetic applications. Recent years have seen exciting reports of enantioselective C-H bond oxidation by Mn catalysts supported by aminopyridyl ligands. Such catalysts offer economic and environmentally-friendly alternatives to conventional reagents and catalysts. Mechanistic studies of synthetic catalysts highlight the role of Mn-oxo motifs in attacking substrate C-H bonds, presumably by a concerted proton-electron transfer (CPET) step. (CPET is a sub-class of PCET, where the proton and electron are transferred in the same step.) Knowledge of geometric and electronic influences for CPET reactions of Mn-hydroxo and Mn-oxo adducts enhances our understanding of biological and synthetic manganese centers and informs the design of new catalysts. In this Feature article, we describe kinetic, spectroscopic, and computational studies of MnIII-hydroxo and MnIV-oxo complexes that provide insight into the basis for the CPET reactivity of these species. Systematic perturbations of the ligand environment around MnIII-hydroxo and MnIV-oxo motifs permit elucidation of structure-activity relationships. For MnIII-hydroxo centers, electron-deficient ligands enhance oxidative reactivity. However, ligand perturbations have competing consequences, as changes in the MnIII/II potential, which represents the electron-transfer component for CPET, is offset by compensating changes in the pKa of the MnII-aqua product, which represents the proton-transfer component for CPET. For MnIV-oxo systems, a multi-state reactivity model inspired the development of significantly more reactive complexes. Weakened equatorial donation to the MnIV-oxo unit results in large rate enhancements for C-H bond oxidation and oxygen-atom transfer reactions. These results demonstrate that the local coordination environment can be rationally changed to enhance reactivity of MnIII-hydroxo and MnIV-oxo adducts.
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Affiliation(s)
- Jaycee R Mayfield
- Department of Chemistry and Center for Environmentally Beneficial Catalysis, University of Kansas, Lawrence, KS 66045, USA.
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46
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Bakhoda AG, Wiese S, Greene C, Figula BC, Bertke JA, Warren TH. Radical Capture at Nickel(II) Complexes: C–C, C–N, and C–O Bond Formation. Organometallics 2020. [DOI: 10.1021/acs.organomet.0c00021] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Affiliation(s)
- Abolghasem Gus Bakhoda
- Georgetown University, Department of Chemistry, Washington, District of Columbia 20057-1227, United States
| | - Stefan Wiese
- Georgetown University, Department of Chemistry, Washington, District of Columbia 20057-1227, United States
| | - Christine Greene
- Georgetown University, Department of Chemistry, Washington, District of Columbia 20057-1227, United States
| | - Bryan C. Figula
- Georgetown University, Department of Chemistry, Washington, District of Columbia 20057-1227, United States
| | - Jeffery A. Bertke
- Georgetown University, Department of Chemistry, Washington, District of Columbia 20057-1227, United States
| | - Timothy H. Warren
- Georgetown University, Department of Chemistry, Washington, District of Columbia 20057-1227, United States
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47
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Bower JK, Cypcar AD, Henriquez B, Stieber SCE, Zhang S. C(sp 3)-H Fluorination with a Copper(II)/(III) Redox Couple. J Am Chem Soc 2020; 142:8514-8521. [PMID: 32275410 DOI: 10.1021/jacs.0c02583] [Citation(s) in RCA: 48] [Impact Index Per Article: 9.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Despite the growing interest in the synthesis of fluorinated organic compounds, few reactions are able to incorporate fluoride ions directly into alkyl C-H bonds. Here, we report the C(sp3)-H fluorination reactivity of a formally copper(III) fluoride complex. The C-H fluorination intermediate, LCuF, along with its chloride and bromide analogues, LCuCl and LCuBr, were prepared directly from halide sources with a chemical oxidant and fully characterized with single-crystal X-ray diffraction, X-ray absorption spectroscopy, UV-vis spectroscopy, and 1H nuclear magnetic resonance spectroscopy. Quantum chemical calculations reveal significant halide radical character for all complexes, suggesting their ability to initiate and terminate a C(sp3)-H halogenation sequence by sequential hydrogen atom abstraction (HAA) and radical capture. The capability of HAA by the formally copper(III) halide complexes was explored with 9,10-dihydroanthracene, revealing that LCuF exhibits rates 2 orders of magnitude higher than LCuCl and LCuBr. In contrast, all three complexes efficiently capture carbon radicals to afford C(sp3)-halogen bonds. Mechanistic investigation of radical capture with a triphenylmethyl radical revealed that LCuF proceeds through a concerted mechanism, while LCuCl and LCuBr follow a stepwise electron transfer-halide transfer pathway. The capability of LCuF to perform both hydrogen atom abstraction and radical capture was leveraged to enable fluorination of allylic and benzylic C-H bonds and α-C-H bonds of ethers at room temperature.
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Affiliation(s)
- Jamey K Bower
- Department of Chemistry & Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
| | - Andrew D Cypcar
- Department of Chemistry & Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
| | - Brenda Henriquez
- Department of Chemistry & Biochemistry, California State Polytechnic University, Pomona, 3801 West Temple Avenue, Pomona, California 91768, United States
| | - S Chantal E Stieber
- Department of Chemistry & Biochemistry, California State Polytechnic University, Pomona, 3801 West Temple Avenue, Pomona, California 91768, United States
| | - Shiyu Zhang
- Department of Chemistry & Biochemistry, The Ohio State University, 100 West 18th Avenue, Columbus, Ohio 43210, United States
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48
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Yadav V, Rodriguez RJ, Siegler MA, Goldberg DP. Determining the Inherent Selectivity for Carbon Radical Hydroxylation versus Halogenation with Fe III(OH)(X) Complexes: Relevance to the Rebound Step in Non-heme Iron Halogenases. J Am Chem Soc 2020; 142:7259-7264. [PMID: 32281794 DOI: 10.1021/jacs.0c00493] [Citation(s) in RCA: 32] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/22/2022]
Abstract
The first structural models of the proposed cis-FeIII(OH)(halide) intermediate in the non-heme iron halogenases were synthesized and examined for their inherent reactivity with tertiary carbon radicals. Selective hydroxylation occurs for these cis-FeIII(OH)(X) (X = Cl, Br) complexes in a radical rebound-like process. In contrast, a cis-FeIII(Cl)2 complex reacts with carbon radicals to give halogenation. These results are discussed in terms of the inherent reactivity of the analogous rebound intermediate in both enzymes and related catalysts.
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Affiliation(s)
- Vishal Yadav
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Rodolfo J Rodriguez
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - Maxime A Siegler
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
| | - David P Goldberg
- Department of Chemistry, The Johns Hopkins University, Baltimore, Maryland 21218, United States
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49
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Maldonado-Domínguez M, Srnec M. Understanding and Predicting Post H-Atom Abstraction Selectivity through Reactive Mode Composition Factor Analysis. J Am Chem Soc 2020; 142:3947-3958. [PMID: 32000494 DOI: 10.1021/jacs.9b12800] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
The selective functionalization of C-H bonds is one of the Grails of synthetic chemistry. In this work, we demonstrate that the selectivity toward fast hydroxylation or radical diffusion (known as the OH-rebound and dissociation mechanisms) following H-atom abstraction (HAA) from a substrate C-H bond by high-valent iron-oxo oxidants is already encoded in the HAA step when the post-HAA barriers are much lower than the preceding one. By applying the reactive mode composition factor (RMCF) analysis, which quantifies the kinetic energy distribution (KED) at the reactive mode (RM) of transition states, we show that reactions following the OH-rebound coordinate concentrate the RM kinetic energy on the motion of the reacting oxygen atom and the nascent substrate radical, whereas reactions following the dissociation channel localize most of their kinetic energy in H-atom motion. These motion signatures serve to predict the post-HAA selectivity, and since KED is affected by the free energy of reaction and asynchronicity (factor η) of HAA, we show that bimolecular HAA reactions in solution that are electron transfer-driven and highly exergonic have the lowest fraction of KED on the transferred H-atom and the highest chance to follow rebound hydroxylation. Finally, the RMCF analysis predicts that the H/D primary kinetic isotope effect can serve as a probe for these mechanisms, as confirmed in virtually all reported examples in the literature.
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Affiliation(s)
- Mauricio Maldonado-Domínguez
- J. Heyrovský Institute of Physical Chemistry, The Czech Academy of Sciences , Dolejškova 3 , Prague 8 18223 , Czech Republic
| | - Martin Srnec
- J. Heyrovský Institute of Physical Chemistry, The Czech Academy of Sciences , Dolejškova 3 , Prague 8 18223 , Czech Republic
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50
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Zaragoza JPT, Cummins DC, Mubarak MQE, Siegler MA, de Visser SP, Goldberg DP. Hydrogen Atom Abstraction by High-Valent Fe(OH) versus Mn(OH) Porphyrinoid Complexes: Mechanistic Insights from Experimental and Computational Studies. Inorg Chem 2019; 58:16761-16770. [PMID: 31804814 DOI: 10.1021/acs.inorgchem.9b02923] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
Abstract
High-valent metal-hydroxide species have been implicated as key intermediates in hydroxylation chemistry catalyzed by heme monooxygenases such as the cytochrome P450s. However, in some classes of P450s, a bifurcation from the typical oxygen rebound pathway is observed, wherein the FeIV(OH)(porphyrin) species carries out a net hydrogen atom transfer reaction to form alkene metabolites. In this work, we examine the hydrogen atom transfer (HAT) reactivity of FeIV(OH)(ttppc) (1), ttppc = 5,10,15-tris(2,4,6-triphenyl)-phenyl corrole, toward substituted phenol derivatives. The iron hydroxide complex 1 reacts with a series of para-substituted 2,6-di-tert-butylphenol derivatives (4-X-2,6-DTBP; X = OMe, Me, Et, H, Ac), with second-order rate constants k2 = 3.6(1)-1.21(3) × 104 M-1 s-1 and yielding linear Hammett and Marcus plot correlations. It is concluded that the rate-determining step for O-H cleavage occurs through a concerted HAT mechanism, based on mechanistic analyses that include a KIE = 2.9(1) and DFT calculations. Comparison of the HAT reactivity of 1 to the analogous Mn complex, MnIV(OH)(ttppc), where only the central metal ion is different, indicates a faster HAT reaction and a steeper Hammett slope for 1. The O-H bond dissociation energy (BDE) of the MIII(HO-H) complexes were estimated from a kinetic analysis to be 85 and 89 kcal mol-1 for Mn and Fe, respectively. These estimated BDEs are closely reproduced by DFT calculations and are discussed in the context of how they influence the overall H atom transfer reactivity.
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Affiliation(s)
- Jan Paulo T Zaragoza
- Department of Chemistry , The Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
| | - Daniel C Cummins
- Department of Chemistry , The Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
| | - M Qadri E Mubarak
- The Manchester Institute of Biotechnology and Department of Chemical Engineering and Analytical Science , The University of Manchester , 131 Princess Street , Manchester M1 7DN , United Kingdom
| | - Maxime A Siegler
- Department of Chemistry , The Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
| | - Sam P de Visser
- The Manchester Institute of Biotechnology and Department of Chemical Engineering and Analytical Science , The University of Manchester , 131 Princess Street , Manchester M1 7DN , United Kingdom
| | - David P Goldberg
- Department of Chemistry , The Johns Hopkins University , 3400 North Charles Street , Baltimore , Maryland 21218 , United States
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