Coral skeletons reveal the history of nitrogen cycling in the coastal Great Barrier Reef

Evaluating the role of recalcitrant dissolved organic matter in bacterial community dynamics in urbanized freshwater ecosystems

Dissolved organic matter (DOM) and recalcitrant dissolved organic matter (RDOM) play distinct roles in shaping microbial communities. However, characterizing these roles is difficult, especially in ecosystems subjected to varying degrees of anthropogenic influence. This study investigated the molecular compositions and ecological impacts of DOM and RDOM in the Fen River, Shanxi Taiyuan, comparing pristine upstream regions with highly urbanized downstream areas. Using 16S rRNA gene sequencing and LC-MS-based metabolomics, we observed significant shifts in microbial community composition, diversity, and metabolic functions. Upstream communities, characterized by higher diversity, were dominated by Bacteroidota, Proteobacteria, and Cyanobacteria, while downstream communities, influenced by pollution, exhibited increased expression of genes related to amino acid metabolism. Fluorescence spectroscopy and Fourier transform ion cyclotron resonance mass spectrometry (FT-ICR MS) revealed that upstream DOM contained higher proportions of complex, high molecular weight compounds, including significant proportions of carboxyl-rich alicyclic molecules (CRAM) and island of stability (IOS) compounds, which play key roles in long-term carbon storage and microbial carbon sequestration. In contrast, downstream DOM was characterized as having lower aromaticity and more saturated compounds, with reduced proportions of CRAM and IOS, reflecting the impact of anthropogenic activities. These findings underscored the critical roles of CRAM and IOS in regulating DOM stability and microbial communities, further highlighting the need for targeted pollution control strategies to preserve ecosystem function in urbanized water bodies.

Crown-of-thorns starfish complete their larval phase eating only nitrogen-fixing Trichodesmium cyanobacteria

Cyanobacteria of the genus Trichodesmium form extensive blooms that supply new N to nutrient-poor marine ecosystems. Yet little is known about what eats Trichodesmium. In this laboratory study, we show that one of the greatest threats to coral reefs, predatory crown-of-thorns starfish (CoTS), Acanthaster sp., completes their larval phase feeding solely on Trichodesmium. We observed Trichodesmium erythraeum CMP1985 in the stomachs of larvae using florescence microscopy and traced the assimilation of nitrogen from labeled trichomes into larval tissues using stable isotopes. Some larvae fed T. erythraeum were morphologically ready to become benthic juveniles after 19 days. Given that Trichodesmium can be food for CoTS, reported increases in Trichodesmium could be a driving factor in the heightened frequency of CoTS population irruptions that have devastated coral reefs in past decades. Future studies could test this through investigating the diets of wild larvae and incorporating Trichodesmium abundance into models of CoTS population dynamics.

The δ15N in Orbicella faveolata organic matter reveals anthropogenic impact by sewage inputs in a Mexican Caribbean coral reef lagoon

Coral-reef ecosystems provide essentials services to human societies, representing the most important source of income (e.g., tourism and artisanal fishing) for many coastal developing countries. In the Caribbean region, most touristic and coastal developments are in the vicinity of coral reefs where they may contribute to reef degradation. Here we evaluated the influence of sewage inputs in the coral reef lagoon of Puerto Morelos during a period of 40 years (1970-2012). Annual δ15N values were determined in the organic matter (OM) extracted from coral skeletons of Orbicella faveolata. Average protein content in the OM was 0.33 mg of protein g-1 CaCO3 (±0.10 SD) and a 0.03% of OM relative to the sample weight (n =100). The average of N g-1 CaCO3 was 0.002% (± 0.001 SD). The results showed an increase (p < 0.001) in δ15N over the time, positively correlated with population growth derived from touristic development. These findings emphasize the need to generate urban-planning remediation strategies that consider the impact on natural environments, reduce sewage pollution, and mitigate local stressors that threaten the status of coral-reef communities in the Caribbean region.

Coral carbonate-bound isotopes reveal monsoonal influence on nitrogen sources in Southeastern China's Greater Bay Area from the mid-Holocene until the Anthropocene

Most anthropogenic nitrogen (N) reaches coastal waters via rivers carrying increasing loads of sewage, fertilizer, and sediments. To understand anthropogenic N impacts, we need to understand historical N-dynamics before human influence. Stable isotope ratios of N preserved in carbonates are one way to create temporal N records. However, records that span periods of human occupation are scarce, limiting our ability to contextualize modern N dynamics. Here, we produce a fossil-bound N-record using coral subfossils, spanning 6700 years in China's Greater Bay Area (GBA). We found that during the mid-to-late Holocene, the GBA's coastal N was dominated by fluvial sources. The weakening of the Asia monsoon throughout the late-Holocene decreased river outflow, leading to a relative increase of marine nitrate. This source shift from riverine-to-ocean dominance was overprinted by anthropogenic N. During the late 1980s to early 1990s, human development and associated effluent inundated the coastal system, contributing to the decline of coral communities.

The origin of suspended particulate matter in the Great Barrier Reef

River run-off has long been regarded as the largest source of organic-rich suspended particulate matter (SPM) in the Great Barrier Reef (GBR), contributing to high turbidity, pollutant exposure and increasing vulnerability of coral reef to climate change. However, the terrestrial versus marine origin of the SPM in the GBR is uncertain. Here we provide multiple lines of evidence (13C NMR, isotopic and genetic fingerprints) to unravel that a considerable proportion of the terrestrially-derived SPM is degraded in the riverine and estuarine mixing zones before it is transported further offshore. The fingerprints of SPM in the marine environment were completely different from those of terrestrial origin but more consistent with that formed by marine phytoplankton. This result indicates that the SPM in the GBR may not have terrestrial origin but produced locally in the marine environment, which has significant implications on developing better-targeted management practices for improving water quality in the GBR.

Insights from Fossil-Bound Nitrogen Isotopes in Diatoms, Foraminifera, and Corals

Nitrogen is a major limiting element for biological productivity, and thus understanding past variations in nitrogen cycling is central to understanding past and future ocean biogeochemical cycling, global climate cycles, and biodiversity. Organic nitrogen encapsulated in fossil biominerals is generally protected from alteration, making it an important archive of the marine nitrogen cycle on seasonal to million-year timescales. The isotopic composition of fossil-bound nitrogen reflects variations in the large-scale nitrogen inventory, local sources and processing, and ecological and physiological traits of organisms. The ability to measure trace amounts of fossil-bound nitrogen has expanded with recent method developments. In this article, we review the foundations and ground truthing for three important fossil-bound proxy types: diatoms, foraminifera, and corals. We highlight their utility with examples of high-resolution evidence for anthropogenic inputs of nitrogen to the oceans, glacial-interglacial-scale assessments of nitrogen inventory change, and evidence for enhanced CO₂ drawdown in the high-latitude ocean. Future directions include expanded method development, characterization of ecological and physiological variation, and exploration of extended timescales to push reconstructions further back in Earth's history.

Nitrogen cycling in a tropical coral reef ecosystem under severe anthropogenic disturbance in summer: Insights from isotopic compositions

Coral reefs, one of the most productive ecosystems, have been dramatically declining in recent decades. While studies contend a prominent correlation between coral reef degradation and increased anthropogenic nitrogen (N) loads, a quantitative description of the N sources and cycling processes in these ecologically important ecosystems is lacking. Through a comprehensive depiction of the δ¹⁵N compositions of seawaters and sediments, we systematically accessed the N cycling processes in the Weizhou coral reef ecosystem. The correlations between the nitrate (NO₃^-) concentrations and isotopic compositions (δ¹⁵N/δ¹⁸O-NO₃^-) indicated the pelagic NO₃^- loads were largely regulated by mixing between precipitation and sewage. Biological NO₃^- turnover processes appeared to be weak. In the sediments, N₂ fixation contributed about one-third of the sedimentary organic N, with the rest coming from the settlement of pelagic organic N. We also uncovered significant sedimentary mineralization-nitrification-denitrification processes in which the N loss was greater than the input. While pelagic N significantly contributed to the sedimentary N, the N export from the sediments to surface seawater was potentially short-circuited by the high N retention and recycling efficiencies of the organisms in the coral reef ecosystem. Overall, this study shows that the complex N cycling processes in the ecosystem are effectively reflected in the isotopic compositions of seawater and sediment, thus adding an important dimension to understanding the N cycling in coral reef ecosystems.

Linking isotopic signatures of nitrogen in nearshore coral skeletons with sources in catchment runoff

We use a multi-tracer approach to identify catchment sources of nitrogen (N) in the skeletons of nearshore Porites corals within the Great Barrier Reef. We measured δ¹⁵N, δ¹³C and C:N ratios of particulate organic matter (POM) sampled from the Pioneer River catchment and identified five distinct end-members: (1) marine planktonic and algal-dominated matter with higher δ¹⁵N values from the river mouth and coastal waters; (2) estuarine planktonic and algal matter with lower δ¹⁵N values associated with estuarine mixing; (3) lower river freshwater phytoplankton and algal-dominated matter in stratified reservoirs adjacent to catchment weirs, with the ¹⁵N-enriched source likely caused by microbial remineralization and denitrification; (4) upper river low δ¹⁵N terrigenous soil matter eroded from cane fields bordering waterways; and (5) terrestrial plant detrital matter in forest streams, representing a low δ¹⁵N fixed atmospheric nitrogen source. The δ¹⁵N values of adjacent, nearshore Porites coral skeletons is reflective of POM composition in coastal waters, with ¹⁵N-enriched values reflective of transformed N during flood pulses from the Pioneer River.

Giant clam growth in the Gulf of Aqaba is accelerated compared to fossil populations

The health of reef-building corals has declined due to climate change and pollution. However, less is known about whether giant clams, reef-dwelling bivalves with a photosymbiotic partnership similar to that found in reef-building corals, are also threatened by environmental degradation. To compare giant clam health against a prehistoric baseline, we collected fossil and modern Tridacna shells from the Gulf of Aqaba, Northern Red Sea. After calibrating daily/twice-daily growth lines from the outer shell layer, we determined that modern individuals of all three species (Tridacna maxima, T. squamosa and T. squamosina) grew faster than Holocene and Pleistocene specimens. Modern specimens also show median shell organic δ15N values 4.2‰ lower than fossil specimens, which we propose is most likely due to increased deposition of isotopically light nitrate aerosols in the modern era. Nitrate fertilization accelerates growth in cultured Tridacna, so nitrate aerosol deposition may contribute to faster growth in modern wild populations. Furthermore, colder winter temperatures and past summer monsoons may have depressed fossil giant clam growth. Giant clams can serve as sentinels of reef environmental change, both to determine their individual health and the health of the reefs they inhabit.

Analysis of satellite imagery using a simple algorithm supports evidence that Trichodesmium supplies a significant new nitrogen load to the GBR lagoon

This work supports previous studies in the Great Barrier Reef lagoon that show the new nitrogen (N) load introduced by Trichodesmium is similar to or greater than that from riverine discharges. However, the current management programs aimed at improving the chronic eutrophic state of the GBR ignore the N load from Trichodesmium. These programs also ignore the evidence that Trichodesmium blooms could promote the bioavailability of heavy metals and be a source of toxins in the ciguatera food chain. Further work is urgently required to better quantify the potential impacts of Trichodesmium and develop management plans to reduce those impacts. A simple algorithm that uses MODIS imagery is developed for not only monitoring the spatial extent of Trichodesmium blooms but also for quantifying the concentration of those blooms. The algorithm is based on the readily available MODIS L2 data. A management plan that includes the harvesting of Trichodesmium is outlined.

Multiple isotopic compositions reveal complex nitrogen cycling in a subtropical estuary

Nitrogen (N) pollution and the resulting eutrophication can have deleterious consequences on estuaries, such as hypoxia, fish kills, and loss of biotic diversity. An understanding of N sources and cycling in estuaries is fundamental to determining how to effectively manage these ecologically and commercially important areas. We applied a multiple-isotopic approach to examine the transformations and sources of the N pools in the Pearl River Estuary (PRE) during winter. The surface water in the West PRE was characterized by low salinity and high NO₃^-, while that in the east had high salinity and low NO₃^-. The NO₃^- in the West PRE was largely regulated by a conservative mixing process. In contrast, assimilation and nitrification dominated in the East PRE, which was attributed to the long water-residence time. For the first time, the source contributions of NO₃^- and NH₄⁺ were estimated by isotope mixing models. Our results suggest that river discharge and nitrification contributed 81% and 12% to the NO₃^- pool, respectively. A major portion (68%) of the NH₄⁺ was from river discharge, with the remainder likely from sewage and the aquitard-aquifer system. Our study demonstrates that internal nitrification can potentially be of pivotal importance in determining the NO₃^- level in an estuary and its export to coastal waters.

Tracing the sources of sediment and associated particulate nitrogen from different land uses in the Johnstone River catchment, Wet Tropics, north-eastern Australia

While the ecosystem of the Great Barrier Reef (GBR), north-eastern Australia, is being threatened by the elevated levels of sediments and nutrients discharged from adjacent coastal river systems, the source of these detrimental pollutants are not well understood. Here we used a combined isotopic (δ¹³C, δ¹⁵N) and geochemical (Zn, Pt and S) signatures and stable isotope analysis in R (SIAR) mixing model to estimate the contribution of different land uses to the sediment and associated particulate nitrogen delivered to the Johnstone River. Results showed that rainforest was the largest contributor of suspended and bed sediments in the river estuary (both 33.1%), followed by banana (26.7%, 20.4%), sugarcane (21.5%, 21.4%) and grazing (18.7%, 25.1%). However, bananas and sugarcane land uses had the highest contribution to sediments delivered to the coast per unit of area. This will help land managers to prioritise on-ground activities to improve water quality in the GBR lagoon.