1
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Garcia B, Becker CC, Weber L, Swarr GJ, Kido Soule MC, Apprill A, Kujawinski EB. Benzoyl Chloride Derivatization Advances the Quantification of Dissolved Polar Metabolites on Coral Reefs. J Proteome Res 2024; 23:2041-2053. [PMID: 38782401 PMCID: PMC11166142 DOI: 10.1021/acs.jproteome.4c00049] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/22/2024] [Revised: 04/23/2024] [Accepted: 05/13/2024] [Indexed: 05/25/2024]
Abstract
Extracellular chemical cues constitute much of the language of life among marine organisms, from microbes to mammals. Changes in this chemical pool serve as invisible signals of overall ecosystem health and disruption to this finely tuned equilibrium. In coral reefs, the scope and magnitude of the chemicals involved in maintaining reef equilibria are largely unknown. Processes involving small, polar molecules, which form the majority components of labile dissolved organic carbon, are often poorly captured using traditional techniques. We employed chemical derivatization with mass spectrometry-based targeted exometabolomics to quantify polar dissolved phase metabolites on five coral reefs in the U.S. Virgin Islands. We quantified 45 polar exometabolites, demonstrated their spatial variability, and contextualized these findings in terms of geographic and benthic cover differences. By comparing our results to previously published coral reef exometabolomes, we show the novel quantification of 23 metabolites, including central carbon metabolism compounds (e.g., glutamate) and novel metabolites such as homoserine betaine. We highlight the immense potential of chemical derivatization-based exometabolomics for quantifying labile chemical cues on coral reefs and measuring molecular level responses to environmental stressors. Overall, improving our understanding of the composition and dynamics of reef exometabolites is vital for effective ecosystem monitoring and management strategies.
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Affiliation(s)
- Brianna
M. Garcia
- Department of Marine Chemistry
and Geochemistry, Woods Hole Oceanographic
Institution, Woods
Hole, Massachusetts 02543, United States
| | | | - Laura Weber
- Department of Marine Chemistry
and Geochemistry, Woods Hole Oceanographic
Institution, Woods
Hole, Massachusetts 02543, United States
| | - Gretchen J. Swarr
- Department of Marine Chemistry
and Geochemistry, Woods Hole Oceanographic
Institution, Woods
Hole, Massachusetts 02543, United States
| | - Melissa C. Kido Soule
- Department of Marine Chemistry
and Geochemistry, Woods Hole Oceanographic
Institution, Woods
Hole, Massachusetts 02543, United States
| | - Amy Apprill
- Department of Marine Chemistry
and Geochemistry, Woods Hole Oceanographic
Institution, Woods
Hole, Massachusetts 02543, United States
| | - Elizabeth B. Kujawinski
- Department of Marine Chemistry
and Geochemistry, Woods Hole Oceanographic
Institution, Woods
Hole, Massachusetts 02543, United States
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2
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Zhang B, Jia C, Li M, Wang K, Chen J, Zhao J. Multiomics integration for the function of bacterial outer membrane vesicles in the larval settlement of marine sponges. Front Microbiol 2024; 15:1268813. [PMID: 38468855 PMCID: PMC10925772 DOI: 10.3389/fmicb.2024.1268813] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/28/2023] [Accepted: 01/26/2024] [Indexed: 03/13/2024] Open
Abstract
Bacterial outer membrane vesicles (OMVs) contain a variety of chemical compounds and play significant roles in maintaining symbiotic relationships in a changing ocean, but little is known about their function, particularly in sponge larval development. During the growth of sponge Tedania sp., OMVs from Bacteroidetes species significantly promoted larval settlement, and Tenacibaculum mesophilum SP-7-OMVs were selected as a representative strain for further investigation. According to OMVs metabolomics, larval settlement might be connected to organic acids and derivatives. The multiomics analysis of the T. mesophilum genome, SP-7-OMVs metabolome, and larval transcriptome revealed 47 shared KEGG pathways. Among the number of candidate metabolites, arginine was chosen for its greater ability to increase the settlement rate and its role as the principal substrate for nitric oxide (NO) synthesis of sponge larvae. In summary, these results demonstrated that sponge-associated bacteria might utilize OMVs and their cargo to support host development and make up for host metabolic pathway deficiencies. This study enhances our fundamental knowledge of OMVs in interactions between metazoan hosts and microorganisms that are crucial in the coevolution of marine ecosystems and the complex marine environment.
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Affiliation(s)
- Beibei Zhang
- College of Ocean and Earth Sciences, Xiamen University, Xaimen, Fujian, China
| | - Chenzheng Jia
- College of Ocean and Earth Sciences, Xiamen University, Xaimen, Fujian, China
| | - Mingyu Li
- College of Ocean and Earth Sciences, Xiamen University, Xaimen, Fujian, China
| | - Kai Wang
- College of Ocean and Earth Sciences, Xiamen University, Xaimen, Fujian, China
| | - Jun Chen
- College of Ocean and Earth Sciences, Xiamen University, Xaimen, Fujian, China
| | - Jing Zhao
- College of Ocean and Earth Sciences, Xiamen University, Xaimen, Fujian, China
- Xiamen City Key Laboratory of Urban Sea Ecological Conservation and Restoration (USER), Xiamen University, Xiamen, Fujian, China
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3
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Bourne DG, Sato Y, Smith HA. Microbes guide corals looking to find a home. Trends Microbiol 2024; 32:120-121. [PMID: 38071163 DOI: 10.1016/j.tim.2023.11.017] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/26/2023] [Revised: 11/28/2023] [Accepted: 11/30/2023] [Indexed: 02/09/2024]
Abstract
Coral reefs are facing unprecedented anthropogenic pressures impacting critical processes such as recruitment of juvenile corals. Through larval choice assays and co-occurrence network analyses, a recent study by Turnlund et al. identified microbial taxa within reef biofilms that positively correlate and therefore have potential key roles in inducing coral settlement.
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Affiliation(s)
- David G Bourne
- College of Science and Engineering, James Cook University, Townsville, QLD 4811, Australia; Australian Institute of Marine Science, Townsville, QLD 4810, Australia.
| | - Yui Sato
- College of Science and Engineering, James Cook University, Townsville, QLD 4811, Australia
| | - Hillary A Smith
- College of Science and Engineering, James Cook University, Townsville, QLD 4811, Australia; School of Biological, Earth and Environmental Sciences, University of New South Wales, Randwick, NSW 2052, Australia
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4
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Randall CJ, Giuliano C, Stephenson B, Whitman TN, Page CA, Treml EA, Logan M, Negri AP. Larval precompetency and settlement behaviour in 25 Indo-Pacific coral species. Commun Biol 2024; 7:142. [PMID: 38297134 PMCID: PMC10830509 DOI: 10.1038/s42003-024-05824-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2023] [Accepted: 01/16/2024] [Indexed: 02/02/2024] Open
Abstract
Knowledge of coral larval precompetency periods and maximum competency windows is fundamental to understanding coral population dynamics, informing biogeography and connectivity patterns, and predicting reef recovery following disturbances. Yet for many species, estimates of these early-life history metrics are scarce and vary widely. Furthermore, settlement cues for many taxa are not known despite consequences to habitat selection. Here we performed a comprehensive experimental time-series investigation of larval settlement behaviour, for 25 Indo-Pacific broadcast-spawning species. To investigate the duration of precompetency, improve predictions of the competency windows, and compare settlement responses within and amongst species, we completed replicated and repeated 24-hour assays that exposed larvae to five common settlement cues. Our study revealed that larval competency in some broadcast-spawning species begins as early as two days post fertilization, but that the precompetency period varies within and between species from about two to six days, with consequences for local retention and population connectivity. We also found that larvae of some species are competent to settle beyond 70 days old and display complex temporal settlement behaviour, challenging the assumption that competency gradually wanes over time and adding to the evidence that larval longevity can support genetic connectivity and long-distance dispersal. Using these data, we grouped coral taxa by short, mid and long precompetency periods, and identified their preferred settlement cues. Taken together, these results inform our understanding of larval dynamics across a broad range of coral species and can be applied to investigations of population dynamics, connectivity, and reef recovery.
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Affiliation(s)
- Carly J Randall
- Australian Institute of Marine Science, Townsville, QLD, Australia.
- AIMS@JCU, Townsville, QLD, Australia.
| | | | | | - Taylor N Whitman
- Australian Institute of Marine Science, Townsville, QLD, Australia
- AIMS@JCU, Townsville, QLD, Australia
| | - Cathie A Page
- Australian Institute of Marine Science, Townsville, QLD, Australia
| | - Eric A Treml
- Australian Institute of Marine Science, Perth, WA, Australia
| | - Murray Logan
- Australian Institute of Marine Science, Townsville, QLD, Australia
| | - Andrew P Negri
- Australian Institute of Marine Science, Townsville, QLD, Australia
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5
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Jeong SY, Gabrielson PW, Hughey JR, Hoey AS, Cho TO, Abdul Wahab MA, Diaz-Pulido G. New branched Porolithon species (Corallinales, Rhodophyta) from the Great Barrier Reef, Coral Sea, and Lord Howe Island. JOURNAL OF PHYCOLOGY 2023; 59:1179-1201. [PMID: 37770245 DOI: 10.1111/jpy.13387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2023] [Revised: 08/06/2023] [Accepted: 08/08/2023] [Indexed: 09/30/2023]
Abstract
Porolithon is one of the most ecologically important genera of tropical and subtropical crustose (non-geniculate) coralline algae growing abundantly along the shallow margins of coral reefs and functioning to cement reef frameworks. Thalli of branched, fruticose Porolithon specimens from the Indo-Pacific Ocean traditionally have been called P. gardineri, while massive, columnar forms have been called P. craspedium. Sequence comparisons of the rbcL gene both from type specimens of P. gardineri and P. craspedium and from field-collected specimens demonstrate that neither species is present in east Australia and instead resolve into four unique genetic lineages. Porolithon howensis sp. nov. forms columnar protuberances and loosely attached margins and occurs predominantly at Lord Howe Island; P. lobulatum sp. nov. has fruticose to clavate forms and free margins that are lobed and occurs in the Coral Sea and on the Great Barrier Reef (GBR); P. parvulum sp. nov. has short (<2 cm), unbranched protuberances and attached margins and is restricted to the central and southern GBR; and P. pinnaculum sp. nov. has a mountain-like, columnar morphology and occurs on oceanic Coral Sea reefs. A rbcL gene sequence of the isotype of P. castellum demonstrates it is a different species from other columnar species. In addition to the diagnostic rbcL and psbA marker sequences, the four new species may be distinguished by a combination of features including thallus growth form, margin shape (attached or unattached), and medullary system (coaxial or plumose). Porolithon species, because of their ecological importance and sensitivity to ocean acidification, need urgent documentation of their taxonomic diversity.
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Affiliation(s)
- So Young Jeong
- Australian Rivers Institute-Coast & Estuaries and Coastal and Marine Research Centre, School of Environment and Science, Nathan Campus, Griffith University, Nathan, Queensland, Australia
| | - Paul W Gabrielson
- Biology Department and Herbarium, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
| | - Jeffery R Hughey
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, California, USA
| | - Andrew S Hoey
- ARC Centre of Excellence for Coral Reef Studies and College of Science and Engineering, James Cook University, Townsville, Queensland, Australia
| | - Tae Oh Cho
- Department of Life Science, Chosun University, Gwangju, South Korea
| | | | - Guillermo Diaz-Pulido
- Coastal and Marine Research Centre, School of Environment and Science, Nathan Campus, Griffith University, Nathan, Queensland, Australia
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6
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Turnlund AC, Vanwonterghem I, Botté ES, Randall CJ, Giuliano C, Kam L, Bell S, O'Brien P, Negri AP, Webster NS, Lurgi M. Linking differences in microbial network structure with changes in coral larval settlement. ISME COMMUNICATIONS 2023; 3:114. [PMID: 37865659 PMCID: PMC10590418 DOI: 10.1038/s43705-023-00320-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Revised: 09/27/2023] [Accepted: 10/06/2023] [Indexed: 10/23/2023]
Abstract
Coral cover and recruitment have decreased on reefs worldwide due to climate change-related disturbances. Achieving reliable coral larval settlement under aquaculture conditions is critical for reef restoration programmes; however, this can be challenging due to the lack of reliable and universal larval settlement cues. To investigate the role of microorganisms in coral larval settlement, we undertook a settlement choice experiment with larvae of the coral Acropora tenuis and microbial biofilms grown for different periods on the reef and in aquaria. Biofilm community composition across conditioning types and time was profiled using 16S and 18S rRNA gene sequencing. Co-occurrence networks revealed that strong larval settlement correlated with diverse biofilm communities, with specific nodes in the network facilitating connections between modules comprised of low- vs high-settlement communities. Taxa associated with high-settlement communities were identified as Myxoccales sp., Granulosicoccus sp., Alcanivoraceae sp., unassigned JTB23 sp. (Gammaproteobacteria), and Pseudovibrio denitrificans. Meanwhile, taxa closely related to Reichenbachiella agariperforans, Pleurocapsa sp., Alcanivorax sp., Sneathiella limmimaris, as well as several diatom and brown algae were associated with low settlement. Our results characterise high-settlement biofilm communities and identify transitionary taxa that may develop settlement-inducing biofilms to improve coral larval settlement in aquaculture.
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Affiliation(s)
- Abigail C Turnlund
- The University of Queensland, School of Chemistry and Molecular Biosciences, Australian Centre for Ecogenomics, St Lucia, QLD, 4072, Australia
| | - Inka Vanwonterghem
- The University of Queensland, School of Chemistry and Molecular Biosciences, Australian Centre for Ecogenomics, St Lucia, QLD, 4072, Australia
| | - Emmanuelle S Botté
- Centre for Marine Science and Innovation, School of Biological, Earth and Environmental Sciences, University of New South Wales, Sydney, NSW, Australia
- Australian Institute of Marine Science, Townsville, QLD, Australia
| | - Carly J Randall
- Australian Institute of Marine Science, Townsville, QLD, Australia
| | | | - Lisa Kam
- Australian Institute of Marine Science, Townsville, QLD, Australia
| | - Sara Bell
- Australian Institute of Marine Science, Townsville, QLD, Australia
| | - Paul O'Brien
- The University of Queensland, School of Chemistry and Molecular Biosciences, Australian Centre for Ecogenomics, St Lucia, QLD, 4072, Australia
| | - Andrew P Negri
- Australian Institute of Marine Science, Townsville, QLD, Australia
| | - Nicole S Webster
- The University of Queensland, School of Chemistry and Molecular Biosciences, Australian Centre for Ecogenomics, St Lucia, QLD, 4072, Australia
- Australian Institute of Marine Science, Townsville, QLD, Australia
- Department of Climate Change, Energy, the Environment and Water, Australian Antarctic Division, Kingston, ACT, Australia
| | - Miguel Lurgi
- Department of Biosciences, Swansea University, Swansea, SA2 8PP, UK.
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7
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Ramesh CH, Prasastha VR, Shunmugaraj T, Karthick P, Mohanraju R, Koushik S, Murthy MVR. Diversity and impacts of macroalgae and cyanobacteria on multi-stressed coral reefs in the Gulf of Mannar Marine Biosphere Reserve. MARINE ENVIRONMENTAL RESEARCH 2023; 191:106161. [PMID: 37704539 DOI: 10.1016/j.marenvres.2023.106161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/10/2023] [Revised: 08/15/2023] [Accepted: 08/30/2023] [Indexed: 09/15/2023]
Abstract
In India, intertidal seaweed resources are widely investigated and utilized for various applications, whereas reef-associated seaweed resources and their impacts on corals are lesser known. Thus, the present study investigated the diversity and impacts of macroalgae and cyanobacteria on coral reefs distributed in 21 islands under the Gulf of Mannar Marine Biosphere Reserve (GoMMBR), Tamil Nadu. About 140 macroalgal species representing 53 species of Chlorophyta, 32 species of Ochrophyta (Phaeophyta), and 55 species of Rhodophyta were recorded. Only three cyanobacterial species were documented during this study. All the documented species were categorized as edible, medicinal, smothering, bloom-forming, sediment trapping, and auxiliary. Diversity indices and multivariate analysis indicated latitudinal gradient distribution of macroalgae, where the maximum diversity was observed from the Mandapam group of Islands. The predominant genera observed in all the islands were Caulerpa, Halimeda, Turbinaria, and Sargassum. The updated checklist of seaweeds and cyanobacteria of India revealed 1118 and 258 species, correspondingly, on Indian coasts, including coral reef regions. The use of traditional morphology-based techniques in this study without molecular approaches to identify all of the specimens limits our investigation. Thus, molecular taxonomy is necessary to revalidate and confirm the actual genetic diversity existing in the Indian waters. Results of this study would benefit the scientific community and industries in various aspects, such as molecular taxonomy, biomass utilization, reef conservation, and industrial applications.
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Affiliation(s)
- C H Ramesh
- Biological Oceanography Division, CSIR-National Institute of Oceanography (CSIR-NIO), Dona Paula, 403004, Goa, India; National Centre for Coastal Research (NCCR), Ministry of Earth Sciences (MoES), NCCR Field Office, Mandapam, 623519, Tamil Nadu, India.
| | - V R Prasastha
- Animal Science and Fisheries Sciences Division, ICAR-Central Coastal Agricultural Research Institute, Velha Goa, 403402, Goa, India
| | - T Shunmugaraj
- National Centre for Coastal Research (NCCR), Ministry of Earth Sciences (MoES), NCCR Field Office, Mandapam, 623519, Tamil Nadu, India
| | - P Karthick
- Department of Ocean Science and Marine Biology, Pondicherry University, Brookshbad Campus, 744112, Port Blair, Andaman and Nicobar Islands, India
| | - R Mohanraju
- Department of Ocean Science and Marine Biology, Pondicherry University, Brookshbad Campus, 744112, Port Blair, Andaman and Nicobar Islands, India
| | - S Koushik
- National Centre for Coastal Research (NCCR), Ministry of Earth Sciences (MoES), NCCR Field Office, Mandapam, 623519, Tamil Nadu, India
| | - M V R Murthy
- National Centre for Coastal Research, Pallikaranai, Chennai, 600100, Tamil Nadu, India
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8
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Padayhag BM, Nada MAL, Baquiran JIP, Sison-Mangus MP, San Diego-McGlone ML, Cabaitan PC, Conaco C. Microbial community structure and settlement induction capacity of marine biofilms developed under varied reef conditions. MARINE POLLUTION BULLETIN 2023; 193:115138. [PMID: 37321001 DOI: 10.1016/j.marpolbul.2023.115138] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2022] [Revised: 05/27/2023] [Accepted: 06/01/2023] [Indexed: 06/17/2023]
Abstract
Coral larval settlement relies on biogenic cues such as those elicited by microbial biofilm communities, a crucial element of coral recruitment. Eutrophication can modify these biofilm-associated communities, but studies on how this affects coral larval settlement are limited. In this study, we developed biofilm communities on glass slides at four sites with increasing distance from a mariculture zone. Biofilms farthest from the mariculture area were more effective at inducing the settlement of Acropora tenuis larvae. These biofilms were characterized by a greater proportion of crustose coralline algae (CCA) and gammaproteobacterial taxa compared to biofilms from sites closer to the mariculture zone, which had a greater proportion of cyanobacteria and no CCA. These findings suggest that nutrient enrichment due to mariculture activities alters the composition of biofilm-associated microbiome at nearby reef sites and indirectly causes poor coral larval settlement.
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Affiliation(s)
- Blaire M Padayhag
- Marine Science Institute, University of the Philippines Diliman, Quezon City, Philippines
| | - Michael Angelou L Nada
- Marine Science Institute, University of the Philippines Diliman, Quezon City, Philippines
| | - Jake Ivan P Baquiran
- Marine Science Institute, University of the Philippines Diliman, Quezon City, Philippines
| | | | | | - Patrick C Cabaitan
- Marine Science Institute, University of the Philippines Diliman, Quezon City, Philippines
| | - Cecilia Conaco
- Marine Science Institute, University of the Philippines Diliman, Quezon City, Philippines.
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9
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Abdul Wahab MA, Ferguson S, Snekkevik VK, McCutchan G, Jeong S, Severati A, Randall CJ, Negri AP, Diaz-Pulido G. Hierarchical settlement behaviours of coral larvae to common coralline algae. Sci Rep 2023; 13:5795. [PMID: 37032381 PMCID: PMC10083175 DOI: 10.1038/s41598-023-32676-4] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2022] [Accepted: 03/31/2023] [Indexed: 04/11/2023] Open
Abstract
Natural regeneration of degraded reefs relies on the recruitment of larvae to restore populations. Intervention strategies are being developed to enhance this process through aquaculture production of coral larvae and their deployment as spat. Larval settlement relies on cues associated with crustose coralline algae (CCA) that are known to induce attachment and metamorphosis. To understand processes underpinning recruitment, we tested larval settlement responses of 15 coral species, to 15 species of CCA from the Great Barrier Reef (GBR). CCA in the family Lithophyllaceae were overall the best inducer across most coral species, with Titanoderma cf. tessellatum being the most effective species that induced at least 50% settlement in 14 of the coral species (mean 81%). Taxonomic level associations were found, with species of Porolithon inducing high settlement in the genus Acropora; while a previously understudied CCA, Sporolithon sp., was a strong inducer for the Lobophyllidae. Habitat-specific associations were detected, with CCA collected from similar light environment as the coral inducing higher levels of settlement. This study revealed the intimate relationships between coral larvae and CCA and provides optimal coral-algal species pairings that could be utilized to increase the success of larval settlement to generate healthy spat for reef restoration.
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Affiliation(s)
- M A Abdul Wahab
- Australian Institute of Marine Science, PMB No.3, Townsville, QLD, 4810, Australia.
| | - S Ferguson
- Australian Institute of Marine Science, PMB No.3, Townsville, QLD, 4810, Australia
| | - V K Snekkevik
- Australian Institute of Marine Science, PMB No.3, Townsville, QLD, 4810, Australia
| | - G McCutchan
- Australian Institute of Marine Science, PMB No.3, Townsville, QLD, 4810, Australia
| | - S Jeong
- School of Environment and Science, Coastal and Marine Research Centre and Australian Rivers Institute, Griffith University, Brisbane, QLD, 4111, Australia
| | - A Severati
- Australian Institute of Marine Science, PMB No.3, Townsville, QLD, 4810, Australia
| | - C J Randall
- Australian Institute of Marine Science, PMB No.3, Townsville, QLD, 4810, Australia
| | - A P Negri
- Australian Institute of Marine Science, PMB No.3, Townsville, QLD, 4810, Australia
| | - G Diaz-Pulido
- School of Environment and Science, Coastal and Marine Research Centre and Australian Rivers Institute, Griffith University, Brisbane, QLD, 4111, Australia
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10
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Clerissi C, Chaïb S, Raviglione D, Espiau B, Bertrand C, Meyer JY. Metabarcoding and Metabolomics Reveal the Effect of the Invasive Alien Tree Miconia calvescens DC. on Soil Diversity on the Tropical Island of Mo'orea (French Polynesia). Microorganisms 2023; 11:microorganisms11040832. [PMID: 37110253 PMCID: PMC10144827 DOI: 10.3390/microorganisms11040832] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2023] [Revised: 03/10/2023] [Accepted: 03/16/2023] [Indexed: 04/29/2023] Open
Abstract
Miconia calvescens is a dominant invasive alien tree species that threatens several endemic plants in French Polynesia (South Pacific). While most analyses have been performed at the scale of plant communities, the effects on the rhizosphere have not been described so far. However, this compartment can be involved in plant fitness through inhibitory activities, nutritive exchanges, and communication with other organisms. In particular, it was not known whether M. calvescens forms specific associations with soil organisms or has a specific chemical composition of secondary metabolites. To tackle these issues, the rhizosphere of six plant species was sampled on the tropical island of Mo'orea in French Polynesia at both the seedling and tree stages. The diversity of soil organisms (bacteria, microeukaryotes, and metazoa) and of secondary metabolites was studied using high-throughput technologies (metabarcoding and metabolomics, respectively). We found that trees had higher effects on soil diversity than seedlings. Moreover, M. calvescens showed a specific association with microeukaryotes of the Cryptomycota family at the tree stage. This family was positively correlated with the terpenoids found in the soil. Many terpenoids were also found within the roots of M. calvescens, suggesting that these molecules were probably produced by the plant and favored the presence of Cryptomycota. Both terpenoids and Cryptomycota were thus specific chemicals and biomarkers of M. calvescens. Additional studies must be performed in the future to better understand if they contribute to the success of this invasive tree.
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Affiliation(s)
- Camille Clerissi
- PSL Université Paris: EPHE-UPVD-CNRS, UAR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, Cedex, 66860 Perpignan, France
| | - Slimane Chaïb
- PSL Université Paris: EPHE-UPVD-CNRS, UAR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, Cedex, 66860 Perpignan, France
| | - Delphine Raviglione
- PSL Université Paris: EPHE-UPVD-CNRS, UAR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, Cedex, 66860 Perpignan, France
| | - Benoit Espiau
- PSL Université Paris: EPHE-UPVD-CNRS, UAR 3278 CRIOBE, B.P. 1013, 98729 Papetoai, Mo'orea, France
| | - Cédric Bertrand
- PSL Université Paris: EPHE-UPVD-CNRS, UAR 3278 CRIOBE, Université de Perpignan, 52 Avenue Paul Alduy, Cedex, 66860 Perpignan, France
| | - Jean-Yves Meyer
- Délégation à la Recherche, B.P. 20981, 98713 Papeete, Tahiti, France
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11
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Mohamed AR, Ochsenkühn MA, Kazlak AM, Moustafa A, Amin SA. The coral microbiome: towards an understanding of the molecular mechanisms of coral-microbiota interactions. FEMS Microbiol Rev 2023; 47:fuad005. [PMID: 36882224 PMCID: PMC10045912 DOI: 10.1093/femsre/fuad005] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 02/10/2023] [Accepted: 02/15/2023] [Indexed: 03/09/2023] Open
Abstract
Corals live in a complex, multipartite symbiosis with diverse microbes across kingdoms, some of which are implicated in vital functions, such as those related to resilience against climate change. However, knowledge gaps and technical challenges limit our understanding of the nature and functional significance of complex symbiotic relationships within corals. Here, we provide an overview of the complexity of the coral microbiome focusing on taxonomic diversity and functions of well-studied and cryptic microbes. Mining the coral literature indicate that while corals collectively harbour a third of all marine bacterial phyla, known bacterial symbionts and antagonists of corals represent a minute fraction of this diversity and that these taxa cluster into select genera, suggesting selective evolutionary mechanisms enabled these bacteria to gain a niche within the holobiont. Recent advances in coral microbiome research aimed at leveraging microbiome manipulation to increase coral's fitness to help mitigate heat stress-related mortality are discussed. Then, insights into the potential mechanisms through which microbiota can communicate with and modify host responses are examined by describing known recognition patterns, potential microbially derived coral epigenome effector proteins and coral gene regulation. Finally, the power of omics tools used to study corals are highlighted with emphasis on an integrated host-microbiota multiomics framework to understand the underlying mechanisms during symbiosis and climate change-driven dysbiosis.
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Affiliation(s)
- Amin R Mohamed
- Biology Program, New York University Abu Dhabi, Abu Dhabi 129188, United Arab Emirates
| | - Michael A Ochsenkühn
- Biology Program, New York University Abu Dhabi, Abu Dhabi 129188, United Arab Emirates
| | - Ahmed M Kazlak
- Systems Genomics Laboratory, American University in Cairo, New Cairo 11835, Egypt
- Biotechnology Graduate Program, American University in Cairo, New Cairo 11835, Egypt
| | - Ahmed Moustafa
- Systems Genomics Laboratory, American University in Cairo, New Cairo 11835, Egypt
- Biotechnology Graduate Program, American University in Cairo, New Cairo 11835, Egypt
- Department of Biology, American University in Cairo, New Cairo 11835, Egypt
| | - Shady A Amin
- Biology Program, New York University Abu Dhabi, Abu Dhabi 129188, United Arab Emirates
- Center for Genomics and Systems Biology (CGSB), New York University Abu Dhabi, Abu Dhabi 129188, United Arab Emirates
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12
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Impact of Marine Chemical Ecology Research on the Discovery and Development of New Pharmaceuticals. Mar Drugs 2023; 21:md21030174. [PMID: 36976223 PMCID: PMC10055925 DOI: 10.3390/md21030174] [Citation(s) in RCA: 8] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2023] [Revised: 03/04/2023] [Accepted: 03/08/2023] [Indexed: 03/12/2023] Open
Abstract
Diverse ecologically important metabolites, such as allelochemicals, infochemicals and volatile organic chemicals, are involved in marine organismal interactions. Chemically mediated interactions between intra- and interspecific organisms can have a significant impact on community organization, population structure and ecosystem functioning. Advances in analytical techniques, microscopy and genomics are providing insights on the chemistry and functional roles of the metabolites involved in such interactions. This review highlights the targeted translational value of several marine chemical ecology-driven research studies and their impact on the sustainable discovery of novel therapeutic agents. These chemical ecology-based approaches include activated defense, allelochemicals arising from organismal interactions, spatio-temporal variations of allelochemicals and phylogeny-based approaches. In addition, innovative analytical techniques used in the mapping of surface metabolites as well as in metabolite translocation within marine holobionts are summarized. Chemical information related to the maintenance of the marine symbioses and biosyntheses of specialized compounds can be harnessed for biomedical applications, particularly in microbial fermentation and compound production. Furthermore, the impact of climate change on the chemical ecology of marine organisms—especially on the production, functionality and perception of allelochemicals—and its implications on drug discovery efforts will be presented.
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13
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Petersen LE, Kellermann MY, Fiegel LJ, Nietzer S, Bickmeyer U, Abele D, Schupp PJ. Photodegradation of a bacterial pigment and resulting hydrogen peroxide release enable coral settlement. Sci Rep 2023; 13:3562. [PMID: 36864107 PMCID: PMC9981606 DOI: 10.1038/s41598-023-30470-w] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2022] [Accepted: 02/23/2023] [Indexed: 03/04/2023] Open
Abstract
The global degradation of coral reefs is steadily increasing with ongoing climate change. Yet coral larvae settlement, a key mechanism of coral population rejuvenation and recovery, is largely understudied. Here, we show how the lipophilic, settlement-inducing bacterial pigment cycloprodigiosin (CYPRO) is actively harvested and subsequently enriched along the ectoderm of larvae of the scleractinian coral Leptastrea purpura. A light-dependent reaction transforms the CYPRO molecules through photolytic decomposition and provides a constant supply of hydrogen peroxide (H2O2), leading to attachment on the substrate and metamorphosis into a coral recruit. Micromolar concentrations of H2O2 in seawater also resulted in rapid metamorphosis, but without prior larval attachment. We propose that the morphogen CYPRO is responsible for initiating attachment while simultaneously acting as a molecular generator for the comprehensive metamorphosis of pelagic larvae. Ultimately, our approach opens a novel mechanistic dimension to the study of chemical signaling in coral settlement and provides unprecedented insights into the role of infochemicals in cross-kingdom interactions.
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Affiliation(s)
- Lars-Erik Petersen
- Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, Schleusenstrasse 1, 26382, Wilhelmshaven, Germany
- Department of Plant and Environmental Sciences, Weizmann Institute of Science, 7610001, Rehovot, Israel
| | - Matthias Y Kellermann
- Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, Schleusenstrasse 1, 26382, Wilhelmshaven, Germany.
| | - Laura J Fiegel
- Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, Schleusenstrasse 1, 26382, Wilhelmshaven, Germany
| | - Samuel Nietzer
- Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, Schleusenstrasse 1, 26382, Wilhelmshaven, Germany
| | - Ulf Bickmeyer
- Alfred Wegener Institute Helmholtz Center for Polar and Marine Research (AWI), Am Handelshafen 12, 27570, Bremerhaven, Germany
| | - Doris Abele
- Alfred Wegener Institute Helmholtz Center for Polar and Marine Research (AWI), Am Handelshafen 12, 27570, Bremerhaven, Germany
| | - Peter J Schupp
- Institute for Chemistry and Biology of the Marine Environment (ICBM), Carl-von-Ossietzky University Oldenburg, Schleusenstrasse 1, 26382, Wilhelmshaven, Germany.
- Helmholtz Institute for Functional Marine Biodiversity (HIFMB) at the University of Oldenburg, Ammerländer Heerstrasse 231, 26129, Oldenburg, Germany.
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14
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Petrén H, Köllner TG, Junker RR. Quantifying chemodiversity considering biochemical and structural properties of compounds with the R package chemodiv. THE NEW PHYTOLOGIST 2023; 237:2478-2492. [PMID: 36527232 DOI: 10.1111/nph.18685] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/09/2022] [Accepted: 12/11/2022] [Indexed: 06/17/2023]
Abstract
Plants produce large numbers of phytochemical compounds affecting plant physiology and interactions with their biotic and abiotic environment. Recently, chemodiversity has attracted considerable attention as an ecologically and evolutionary meaningful way to characterize the phenotype of a mixture of phytochemical compounds. Currently used measures of phytochemical diversity, and related measures of phytochemical dissimilarity, generally do not take structural or biosynthetic properties of compounds into account. Such properties can be indicative of the compounds' function and inform about their biosynthetic (in)dependence, and should therefore be included in calculations of these measures. We introduce the R package chemodiv, which retrieves biochemical and structural properties of compounds from databases and provides functions for calculating and visualizing chemical diversity and dissimilarity for phytochemicals and other types of compounds. Our package enables calculations of diversity that takes the richness, relative abundance and - most importantly - structural and/or biosynthetic dissimilarity of compounds into account. We illustrate the use of the package with examples on simulated and real datasets. By providing the R package chemodiv for quantifying multiple aspects of chemodiversity, we hope to facilitate investigations of how chemodiversity varies across levels of biological organization, and its importance for the ecology and evolution of plants and other organisms.
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Affiliation(s)
- Hampus Petrén
- Evolutionary Ecology of Plants, Department of Biology, Philipps-University Marburg, 35043, Marburg, Germany
| | - Tobias G Köllner
- Department of Natural Product Biosynthesis, Max Planck Institute for Chemical Ecology, 07745, Jena, Germany
| | - Robert R Junker
- Evolutionary Ecology of Plants, Department of Biology, Philipps-University Marburg, 35043, Marburg, Germany
- Department of Environment and Biodiversity, University of Salzburg, 5020, Salzburg, Austria
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15
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Bergstrom E, Lahnstein J, Collins H, Page TM, Bulone V, Diaz-Pulido G. Cell wall organic matrix composition and biomineralization across reef-building coralline algae under global change. JOURNAL OF PHYCOLOGY 2023; 59:111-125. [PMID: 36301224 DOI: 10.1111/jpy.13290] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2022] [Accepted: 10/03/2022] [Indexed: 06/16/2023]
Abstract
Crustose coralline algae (CCA) are one of the most important benthic substrate consolidators on coral reefs through their ability to deposit calcium carbonate on an organic matrix in their cell walls. Discrete polysaccharides have been recognized for their role in biomineralization, yet little is known about the carbohydrate composition of organic matrices across CCA taxa and whether they have the capacity to modulate their organic matrix constituents amidst environmental change, particularly the threats of ocean acidification (OA) and warming. We simulated elevated pCO2 and temperature (IPCC RCP 8.5) and subjected four mid-shelf Great Barrier Reef species of CCA to 2 months of experimentation. To assess the variability in surficial monosaccharide composition and biomineralization across species and treatments, we determined the monosaccharide composition of the polysaccharides present in the cell walls of surficial algal tissue and quantified calcification. Our results revealed dissimilarity among species' monosaccharide constituents, which suggests that organic matrices are composed of different polysaccharides across CCA taxa. We also observed that species differentially modulate composition in response to ocean acidification and warming. Our findings suggest that both variability in composition and ability to modulate monosaccharide abundance may play a crucial role in surficial biomineralization dynamics under the stress of OA and global warming.
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Affiliation(s)
- Ellie Bergstrom
- School of Environment & Science and Australian Rivers Institute - Nathan Campus, Griffith University, 170 Kessels Road, Brisbane, Nathan, Queensland, 4111, Australia
| | - Jelle Lahnstein
- Adelaide Glycomics, School of Agriculture, Food, and Wine, University of Adelaide, Waite Campus, Urrbrae, South Australia, 5064, Australia
| | - Helen Collins
- Adelaide Glycomics, School of Agriculture, Food, and Wine, University of Adelaide, Waite Campus, Urrbrae, South Australia, 5064, Australia
| | - Tessa M Page
- School of Environment & Science and Australian Rivers Institute - Nathan Campus, Griffith University, 170 Kessels Road, Brisbane, Nathan, Queensland, 4111, Australia
| | - Vincent Bulone
- Adelaide Glycomics, School of Agriculture, Food, and Wine, University of Adelaide, Waite Campus, Urrbrae, South Australia, 5064, Australia
- College of Medicine & Public Health, Health Sciences Building, Flinders University, Bedford Park Campus, Sturt Road, Adelaide, South Australia, 5042, Australia
| | - Guillermo Diaz-Pulido
- School of Environment & Science, Coastal & Marine Research Centre and Australian Rivers Institute - Nathan Campus, Griffith University, 170 Kessels Road, Brisbane, Nathan, Queensland, 4111, Australia
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16
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Community assessment of crustose calcifying red algae as coral recruitment substrates. PLoS One 2022; 17:e0271438. [PMID: 35867665 PMCID: PMC9307205 DOI: 10.1371/journal.pone.0271438] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/25/2021] [Accepted: 06/30/2022] [Indexed: 12/28/2022] Open
Abstract
Successful recruitment of invertebrate larvae to reef substrates is essential to the health of tropical coral reef ecosystems and to their capacity to recover from disturbances. Crustose calcifying red algae (CCRA) are a species rich group of seaweeds that have been identified as important recruitment substrates for scleractinian corals. Most studies on the settlement preference of coral larvae on CCRA use morphological species identifications that can lead to unreliable species identification and do not allow for examining species-specific interactions between coral larvae and CCRA. Accurate identifications of CCRA species is important for coral reef restoration and management to assess CCRA community composition and to detect CCRA species that are favored as coral recruitment substrates. In this study, DNA sequence analysis, was used to identify CCRA species to (1) investigate the species richness and community composition of CCRA on experimental coral recruitment tiles and (2) assess if the coral Acropora surculosa preferred any of these CCRA species as recruitment substrates. The CCRA community assemblages on the coral recruitment tiles was species-rich, comprising 27 distinct CCRA species of the orders Corallinales and Peyssonneliales which constitute new species records for Guam. Lithophylloideae sp. 1 (Corallinales) was the CCRA species that was significantly favored by coral larvae as a recruitment substrate. Lithophylloideae sp. 1 showed to hold a valuable ecological role for coral larval recruitment preference. Lithophylloideae sp. 1 had the highest benthic cover on the recruitment tiles and contained most A. surculosa recruits. DNA barcoding revealed a high taxonomic diversity of CCRA species on a microhabitat scale and provided detailed insight into the species-specific ecological interactions between CCRA and corals. With a steady decline in coral cover, detailed information on species interactions that drive reef recovery is valuable for the planning of marine management actions and restoration efforts.
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17
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Study on the Development and Growth of Coral Larvae. APPLIED SCIENCES-BASEL 2022. [DOI: 10.3390/app12105255] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Studies on the early development of corals are required for academic research on coral reefs and applied reef conservation, but the interval between observations is usually weeks or months. Thus, no study has comprehensively explored the development of coral larvae after settlement. This study observed Galaxea fascicularis, Mycedium elephantotus, Pocillopora verrucosa, and Seriatopora caliendrum larvae after settlement, including their growth process and the formation of tentacles, skeletons, and polyps. The G. fascicularis and M. elephantotus polyps exhibited the skeleton-over-polyp mechanism, whereas the P. verrucosa and S. caliendrum polyps exhibited the polyp-over-skeleton mechanism. During asexual reproduction, the Symbiodiniaceae species clustered on the coenosarc, resulting in polyp development and skeletal growth. M. Elephantotus was unique in that its tentacles were umbrella-shaped, and its polyp growth and Symbiodiniaceae species performance during asexual reproduction differed from those of the other three corals. Although both P. verrucosa and S. caliendrum have branching morphologies, their vertical development stages were dissimilar. S. caliendrum relied on the mutual pushing of individuals in the colony to extend upward, whereas P. verrucosa had a center individual that developed vertically. The findings of this study can serve as a reference for future research on coral breeding, growth, and health assessments.
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18
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Ishii Y, Hatta M, Deguchi R, Kawata M, Maruyama S. Gene expression alterations from reversible to irreversible stages during coral metamorphosis. ZOOLOGICAL LETTERS 2022; 8:4. [PMID: 35078542 PMCID: PMC8787945 DOI: 10.1186/s40851-022-00187-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/16/2021] [Accepted: 12/13/2021] [Indexed: 06/14/2023]
Abstract
For corals, metamorphosis from planktonic larvae to sedentary polyps is an important life event, as it determines the environment in which they live for a lifetime. Although previous studies on the reef-building coral Acropora have clarified a critical time point during metamorphosis when cells are committed to their fates, as defined by an inability to revert back to their previous states as swimming larvae (here referred to as the "point of no return"), the molecular mechanisms of this commitment to a fate remain unclear. To address this issue, we analyzed the transcriptomic changes before and after the point of no return by inducing metamorphosis of Acropora tenuis with Hym-248, a metamorphosis-inducing neuropeptide. Gene Ontology and pathway enrichment analysis of the 5893 differentially expressed genes revealed that G protein-coupled receptors (GPCRs) were enriched, including GABA receptor and Frizzled gene subfamilies, which showed characteristic temporal expression patterns. The GPCRs were then classified by comparison with those of Homo sapiens, Nematostella vectensis and Platynereis dumerilii. Classification of the differentially expressed genes into modules based on expression patterns showed that some modules with large fluctuations after the point of no return were biased toward functions such as protein metabolism and transport. This result suggests that in precommitted larvae, different types of GPCR genes function to ensure a proper environment, whereas in committed larvae, intracellular protein transport and proteolysis may cause a loss of the reversibility of metamorphosis as a result of cell differentiation.
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Affiliation(s)
- Yuu Ishii
- Department of Biology, Miyagi University of Education, Aoba-ku, Sendai, Sendai, Miyagi 980-0845 Japan
- Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Aoba-ku, Sendai, Miyagi 980-8578 Japan
| | - Masayuki Hatta
- Graduate School of Humanities and Sciences, Ochanomizu University, Bunkyo-ku, Tokyo, 112-8610 Japan
| | - Ryusaku Deguchi
- Department of Biology, Miyagi University of Education, Aoba-ku, Sendai, Sendai, Miyagi 980-0845 Japan
| | - Masakado Kawata
- Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Aoba-ku, Sendai, Miyagi 980-8578 Japan
| | - Shinichiro Maruyama
- Department of Environmental Life Sciences, Graduate School of Life Sciences, Tohoku University, Aoba-ku, Sendai, Miyagi 980-8578 Japan
- Graduate School of Humanities and Sciences, Ochanomizu University, Bunkyo-ku, Tokyo, 112-8610 Japan
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19
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Factors Limiting the Range Extension of Corals into High-Latitude Reef Regions. DIVERSITY 2021. [DOI: 10.3390/d13120632] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/01/2023]
Abstract
Reef-building corals show a marked decrease in total species richness from the tropics to high latitude regions. Several hypotheses have been proposed to account for this pattern in the context of abiotic and biotic factors, including temperature thresholds, light limitation, aragonite saturation, nutrient or sediment loads, larval dispersal constraints, competition with macro-algae or other invertebrates, and availability of suitable settlement cues or micro-algal symbionts. Surprisingly, there is a paucity of data supporting several of these hypotheses. Given the immense pressures faced by corals in the Anthropocene, it is critical to understand the factors limiting their distribution in order to predict potential range expansions and the role that high latitude reefs can play as refuges from climate change. This review examines these factors and outlines critical research areas to address knowledge gaps in our understanding of light/temperature interactions, coral-Symbiodiniaceae associations, settlement cues, and competition in high latitude reefs.
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