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Thompson NS, Anwar AF, Krum D, Ream M, Shouse E, Weston Z, Chen YR, Sam A, Deguchi M, Kariuki SM, Rudrabhatla SV, Curtis WR. Transgenic tomato strategies targeting whitefly eggs from apoplastic or ovary-directed proteins. BMC PLANT BIOLOGY 2024; 24:1262. [PMID: 39731036 DOI: 10.1186/s12870-024-05852-5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2024] [Accepted: 11/19/2024] [Indexed: 12/29/2024]
Abstract
BACKGROUND Transgenic plants expressing proteins that target the eggs of the ubiquitous plant pest Bemisia tabaci (whitefly) could be an effective insecticide strategy. Two approaches for protein delivery are assessed using the mCherry reporter gene in transgenic tomato plants, while accommodating autofluorescence in both the plant, phloem-feeding whitefly and pedicle-attached eggs. RESULTS Both transgenic strategies were segregated to homozygous genotype using digital PCR. The first strategy uses a glycotransferase secretion signal peptide. Despite bright apoplastic accumulation, mCherry is not evident in the eggs. The second strategy targets in vivo whitefly eggs, where the mCherry transgene was fused to a protein transduction domain (PTD) to facilitate uptake into the whitefly hemolymph as well as a synthetic vitellogenin ovary-targeting sequence. Phloem-specific expression of the mCherry fusion is achieved from a Commelina viral promoter. Accumulation was not sufficient to be observed in females feeding on these ovary-targeting plants nor in their eggs subsequently laid on non-transgenic plants. Egg protection may be mediated by protease activity which is observed in macerated eggs. CONCLUSIONS mCherry proved an effective reporter for the desired tissue-specific expression in tomato, but insufficiently sensitive to allow for localization in feeding whiteflies or their eggs. Segregated homozygous transgenic tomato lines were important for drawing these conclusions. The implications of these observations to possible pest-control strategies including preliminary expression of analogous chitinase constructs are discussed.
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Grants
- Defense Advanced Research Projects Agency (DARPA) Defense Sciences Office, DARPA
- Defense Advanced Research Projects Agency (DARPA) Defense Sciences Office, DARPA
- Defense Advanced Research Projects Agency (DARPA) Defense Sciences Office, DARPA
- Defense Advanced Research Projects Agency (DARPA) Defense Sciences Office, DARPA
- Defense Advanced Research Projects Agency (DARPA) Defense Sciences Office, DARPA
- Defense Advanced Research Projects Agency (DARPA) Defense Sciences Office, DARPA
- Defense Advanced Research Projects Agency (DARPA) Defense Sciences Office, DARPA
- Defense Advanced Research Projects Agency (DARPA) Defense Sciences Office, DARPA
- Defense Advanced Research Projects Agency (DARPA) Defense Sciences Office, DARPA
- Defense Advanced Research Projects Agency (DARPA) Defense Sciences Office, DARPA
- Defense Advanced Research Projects Agency (DARPA) Defense Sciences Office, DARPA
- 1543929 National Science Foundation
- 1543929 National Science Foundation
- 1543929 National Science Foundation
- 1543929 National Science Foundation
- 1543929 National Science Foundation
- 1543929 National Science Foundation
- 1543929 National Science Foundation
- 1543929 National Science Foundation
- OPP51589 Bill and Melinda Gates Foundation
- OPP51589 Bill and Melinda Gates Foundation
- OPP51589 Bill and Melinda Gates Foundation
- OPP51589 Bill and Melinda Gates Foundation
- OPP51589 Bill and Melinda Gates Foundation
- OPP51589 Bill and Melinda Gates Foundation
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Affiliation(s)
- Natalie S Thompson
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Aliya Fathima Anwar
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
- African Genome Center - UM6P, Ben Guerir, Morocco
| | - David Krum
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Michael Ream
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Eva Shouse
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
- Microbiology Program, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Zachary Weston
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Yun-Ru Chen
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Aisa Sam
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
- Biotechnology Program, The Pennsylvania State University, University Park, PA, 16802, USA
| | - Michihito Deguchi
- Department of Biology, The Pennsylvania State University, Harrisburg, PA, 17057, USA
- Department of Genetics, University of Georgia, Athens, GA, 30602, USA
| | - Samwel M Kariuki
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA
- Department of Plant Sciences, Kenyatta University, Nairobi, PA, 16802, Kenya
| | - Sairam V Rudrabhatla
- Department of Biology, The Pennsylvania State University, Harrisburg, PA, 17057, USA
| | - Wayne R Curtis
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA, 16802, USA.
- Intercollege Program in Plant Biology, The Pennsylvania State University, University Park, PA, 16802, USA.
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Kanda Y, Shinya T, Wari D, Hojo Y, Fujiwara Y, Tsuchiya W, Fujimoto Z, Thomma BPHJ, Nishizawa Y, Kamakura T, Galis I, Mori M. Chitin-signaling-dependent responses to insect oral secretions in rice cells propose the involvement of chitooligosaccharides in plant defense against herbivores. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024. [PMID: 39579336 DOI: 10.1111/tpj.17157] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/21/2024] [Revised: 10/16/2024] [Accepted: 11/08/2024] [Indexed: 11/25/2024]
Abstract
Plants recognize molecules related to a variety of biotic stresses through pattern recognition receptors to activate plant immunity. In the interactions between plants and chewing herbivores, such as lepidopteran larvae, oral secretions (OS) are deposited on wounded sites, which results in the elicitation of plant immune responses. The widely conserved receptor-like kinase CHITIN ELICITOR RECEPTOR KINASE 1 (CERK1) has been broadly associated with the recognition of microbial components, such as fungal chitin, but its relevance to herbivory remained unclear. In this study, we used receptor-knockout rice (Oryza sativa) and larvae of the lepidopteran pest Mythimna loreyi to demonstrate that the induction of immune responses triggered by larval OS in rice cells largely depends on CERK1 (OsCERK1). CHITIN ELICITOR-BINDING PROTEIN (CEBiP), an OsCERK1-interacting receptor-like protein that was proposed as the main chitin receptor, also contributed to the responses of rice cells to OS collected from three different lepidopteran species. Furthermore, CEBiP knockout rice seedlings showed lower OS-triggered accumulation of jasmonic acid. These results strongly suggest that the OsCERK1 and CEBiP recognize a particular OS component in chewing lepidopteran herbivores, and point toward the presence of chitooligosaccharides in the OS. Targeted perturbation to chitin recognition, through the use of fungal effector proteins, confirmed the presence of chitooligosaccharides in the OS. Treatments of wounds on rice plants with chitooligosaccharides enhanced a set of immune responses, leading to resistance against an herbivorous insect. Our data show that rice recognizes chitooligosaccharides during larval herbivory to activate resistance, and identifies chitin as a novel herbivore-associated molecular pattern.
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Affiliation(s)
- Yasukazu Kanda
- Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, 305-8634, Japan
- Department of Applied Biological Science, Graduate School of Science and Technology, Tokyo University of Science, Noda, 278-8510, Japan
| | - Tomonori Shinya
- Institute of Plant Science and Resources, Okayama University, Kurashiki, 710-0046, Japan
| | - David Wari
- Institute of Plant Science and Resources, Okayama University, Kurashiki, 710-0046, Japan
| | - Yuko Hojo
- Institute of Plant Science and Resources, Okayama University, Kurashiki, 710-0046, Japan
| | - Yuka Fujiwara
- Institute of Plant Science and Resources, Okayama University, Kurashiki, 710-0046, Japan
| | - Wataru Tsuchiya
- Research Center for Advanced Analysis, NARO, Tsukuba, 305-8518, Japan
| | - Zui Fujimoto
- Research Center for Advanced Analysis, NARO, Tsukuba, 305-8518, Japan
| | - Bart P H J Thomma
- Institute for Plant Sciences, Cluster of Excellence on Plant Sciences (CEPLAS), University of Cologne, Cologne, 50674, Germany
| | - Yoko Nishizawa
- Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, 305-8634, Japan
| | - Takashi Kamakura
- Department of Applied Biological Science, Graduate School of Science and Technology, Tokyo University of Science, Noda, 278-8510, Japan
| | - Ivan Galis
- Institute of Plant Science and Resources, Okayama University, Kurashiki, 710-0046, Japan
| | - Masaki Mori
- Institute of Agrobiological Sciences, National Agriculture and Food Research Organization (NARO), Tsukuba, 305-8634, Japan
- Department of Applied Biological Science, Graduate School of Science and Technology, Tokyo University of Science, Noda, 278-8510, Japan
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Li X, Jin D, Yi F, Tang M, Wan S, Fan Y, Xiao Y, Liu T, Li H, Li J, Qiu M, Pei Y. BpAFP, a Broussonetia papyrifera latex chitinase, exhibits a dual role in resisting to both Verticillium wilt disease and lepidopterous pests, Plutella xylostella and Prodenia litura. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2024; 346:112161. [PMID: 38879177 DOI: 10.1016/j.plantsci.2024.112161] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/10/2024] [Revised: 06/11/2024] [Accepted: 06/12/2024] [Indexed: 06/28/2024]
Abstract
Paper mulberry (Broussonetia papyrifera) is a fast-growing tree known for its tolerance to diverse biotic and abiotic stresses. To explore genes combating Verticillium wilt, a devasting and formidable disease damage to cotton and many economically significant crops, we purified an antifungal protein, named BpAFP, from the latex of paper mulberry. Based on peptide fingerprint, we cloned the full cDNA sequence of BpAFP and revealed that BpAFP belongs to Class I chitinases, sharing 74 % identity with B. papyrifera leaf chitinase, PMAPII. We further introduced BpAFP into Arabidopsis, tobacco, and cotton. Transgenic plants exhibited significant resistance to Verticillium wilt. Importantly, BpAFP also demonstrated insecticidal activity against herbivorous pests, Plutella xylostella, and Prodenia litura, when feeding the larvae with transgenic leaves. Our finding unveils a dual role of BpAFP in conferring resistance to both plant diseases and lepidopterous pests.
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Affiliation(s)
- Xianbi Li
- Chongqing Key Laboratory of Crop Molecular Improvement, College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400716, China
| | - Dan Jin
- Chongqing Key Laboratory of Crop Molecular Improvement, College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400716, China
| | - Feifei Yi
- Chongqing Key Laboratory of Crop Molecular Improvement, College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400716, China
| | - Meng Tang
- Chongqing Key Laboratory of Crop Molecular Improvement, College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400716, China
| | - Siyi Wan
- Chongqing Key Laboratory of Crop Molecular Improvement, College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400716, China
| | - Yanhua Fan
- Chongqing Key Laboratory of Crop Molecular Improvement, College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400716, China
| | - Yuehua Xiao
- Chongqing Key Laboratory of Crop Molecular Improvement, College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400716, China
| | - Ting Liu
- Chongqing Key Laboratory of Crop Molecular Improvement, College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400716, China
| | - Hui Li
- Chongqing Key Laboratory of Crop Molecular Improvement, College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400716, China
| | - Jiancong Li
- Chongqing Key Laboratory of Crop Molecular Improvement, College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400716, China
| | - Mingliang Qiu
- Chongqing Key Laboratory of Crop Molecular Improvement, College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400716, China
| | - Yan Pei
- Chongqing Key Laboratory of Crop Molecular Improvement, College of Agronomy and Biotechnology, Southwest University, Beibei, Chongqing 400716, China.
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Sellamuthu G, Naseer A, Hradecký J, Chakraborty A, Synek J, Modlinger R, Roy A. Gene expression plasticity facilitates different host feeding in Ips sexdentatus (Coleoptera: Curculionidae: Scolytinae). INSECT BIOCHEMISTRY AND MOLECULAR BIOLOGY 2024; 165:104061. [PMID: 38151136 DOI: 10.1016/j.ibmb.2023.104061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Revised: 11/30/2023] [Accepted: 12/15/2023] [Indexed: 12/29/2023]
Abstract
Host shift is ecologically advantageous and a crucial driver for herbivore insect speciation. Insects on the non-native host obtain enemy-free space and confront reduced competition, but they must adapt to survive. Such signatures of adaptations can often be detected at the gene expression level. It is astonishing how bark beetles cope with distinct chemical environments while feeding on various conifers. Hence, we aim to disentangle the six-toothed bark beetle (Ips sexdentatus) response against two different conifer defences upon host shift (Scots pine to Norway spruce). We conducted bioassay and metabolomic analysis followed by RNA-seq experiments to comprehend the beetle's ability to surpass two different terpene-based conifer defence systems. Beetle growth rate and fecundity were increased when reared exclusively on spruce logs (alternative host) compared to pine logs (native host). Comparative gene expression analysis identified differentially expressed genes (DEGs) related to digestion, detoxification, transporter activity, growth, signalling, and stress response in the spruce-feeding beetle gut. Transporter genes were highly abundant during spruce feeding, suggesting they could play a role in pumping a wide variety of endogenous and xenobiotic compounds or allelochemicals out. Trehalose transporter (TRET) is also up-regulated in the spruce-fed beetle gut to maintain homeostasis and stress tolerance. RT-qPCR and enzymatic assays further corroborated some of our findings. Taken together, the transcriptional plasticity of key physiological genes plays a crucial role after the host shift and provides vital clues for the adaptive potential of bark beetles on different conifer hosts.
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Affiliation(s)
- Gothandapani Sellamuthu
- Czech University of Life Sciences Prague, Forest Molecular Entomology Lab, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic; Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Aisha Naseer
- Czech University of Life Sciences Prague, Forest Molecular Entomology Lab, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic; Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Jaromír Hradecký
- Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Amrita Chakraborty
- Czech University of Life Sciences Prague, Forest Molecular Entomology Lab, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic; Czech University of Life Sciences Prague, Forest Microbiome Team, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Jiří Synek
- Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Roman Modlinger
- Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic
| | - Amit Roy
- Czech University of Life Sciences Prague, Forest Molecular Entomology Lab, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic; Czech University of Life Sciences Prague, Excellent Team for Mitigation (ETM), Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic; Czech University of Life Sciences Prague, Forest Microbiome Team, Faculty of Forestry & Wood Sciences, Kamýcká 129, Prague, 16500, Czech Republic.
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5
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Simmons CR, Herman RA. Non-seed plants are emerging gene sources for agriculture and insect control proteins. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2023; 116:23-37. [PMID: 37309832 DOI: 10.1111/tpj.16349] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/04/2023] [Revised: 06/06/2023] [Accepted: 06/08/2023] [Indexed: 06/14/2023]
Abstract
The non-seed plants (e.g., charophyte algae, bryophytes, and ferns) have multiple human uses, but their contributions to agriculture and research have lagged behind seed plants. While sharing broadly conserved biology with seed plants and the major crops, non-seed plants sometimes possess alternative molecular and physiological adaptations. These adaptations may guide crop improvements. One such area is the presence of multiple classes of insecticidal proteins found in non-seed plant genomes which are either absent or widely diverged in seed plants. There are documented uses of non-seed plants, and ferns for example have been used in human diets. Among the occasional identifiable toxins or antinutritive components present in non-seed plants, none include these insecticidal proteins. Apart from these discrete risk factors which can be addressed in the safety assessment, there should be no general safety concern about sourcing genes from non-seed plant species.
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Affiliation(s)
- Carl R Simmons
- Corteva Agriscience, Trait Discovery, Johnston, Iowa, 50131, USA
| | - Rod A Herman
- Corteva Agriscience, Regulatory and Stewardship, Johnston, Iowa, 50131, USA
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6
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Rakesh V, Kalia VK, Ghosh A. Diversity of transgenes in sustainable management of insect pests. Transgenic Res 2023; 32:351-381. [PMID: 37573273 DOI: 10.1007/s11248-023-00362-w] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/06/2023] [Accepted: 07/28/2023] [Indexed: 08/14/2023]
Abstract
Insecticidal transgenes, when incorporated and expressed in plants, confer resistance against insects by producing several products having insecticidal properties. Protease inhibitors, lectins, amylase inhibitors, and chitinase genes are associated with the natural defenses developed by plants to counter insect attacks. Several toxin genes are also derived from spiders and scorpions for protection against insects. Bacillus thuringiensis Berliner is a microbial source of insecticidal toxins. Several methods have facilitated the large-scale production of transgenic plants. Bt-derived cry, cyt, vip, and sip genes, plant-derived genes such as lectins, protease inhibitors, and alpha-amylase inhibitors, insect cell wall-degrading enzymes like chitinase and some proteins like arcelins, plant defensins, and ribosome-inactivating proteins have been successfully utilized to impart resistance to insects. Besides, transgenic plants expressing double-stranded RNA have been developed with enhanced resistance. However, the long-term effects of transgenes on insect resistance, the environment, and human health must be thoroughly investigated before they are made available for commercial planting. In this chapter, the present status, prospects, and future scope of transgenes for insect pest management have been summarized and discussed.
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Affiliation(s)
- V Rakesh
- Division of Entomology, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
- Insect Vector Laboratory, Advanced Centre for Plant Virology, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Vinay K Kalia
- Division of Entomology, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India
| | - Amalendu Ghosh
- Insect Vector Laboratory, Advanced Centre for Plant Virology, ICAR-Indian Agricultural Research Institute, New Delhi, 110012, India.
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7
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Singh A, Singh S, Singh R, Kumar S, Singh SK, Singh IK. Dynamics of Zea mays transcriptome in response to a polyphagous herbivore, Spodoptera litura. Funct Integr Genomics 2021; 21:571-592. [PMID: 34415472 DOI: 10.1007/s10142-021-00796-7] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Revised: 06/17/2021] [Accepted: 07/02/2021] [Indexed: 12/01/2022]
Abstract
Zea mays defense response is well-crafted according to the physical and chemical weapons utilized by their invaders during the coevolutionary period. Maize plants employ diversified defense strategies and alter the spatiotemporal distribution of several classes of defensive compounds to affect insect herbivore performance. However, only little knowledge is available about the defense orchestration of maize in response to Spodoptera litura, a voracious Noctuidae pest. In order to decipher the defense status of Zea mays (African tall variety) against S. litura, a comparative feeding bioassay was executed, which revealed reduced performance of the herbivore on maize. In order to understand the molecular mechanism behind maize tolerance against S. litura, a microarray-based genome-wide expression analysis was performed. The comparative analysis displayed 792 differentially expressed genes (DEGs), wherein 357 genes were upregulated and 435 genes were downregulated at fold change ≥ 2 and p value ≤ 0.05. The upregulated genes were identified and categorized as defense-related, oxidative stress-related, transcription regulatory genes, protein synthesis genes, phytohormone-related, and primary and secondary metabolism-related. In contrast, downregulated genes were mainly associated with plant growth and development, indicating a balance of growth and defense response and utilization of a highly evolved C-diversion response were noticed. Maize plants showed better tolerance against herbivory and maintained its fitness using a combinatorial strategy. This peculiar response of Zea mays against S. litura offers an excellent possibility of managing polyphagous pests by spicing up the plant's defensive response with tolerance mechanism.
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Affiliation(s)
- Archana Singh
- Department of Botany, Hansraj College, University of Delhi, Delhi-110007, India.
| | - Sujata Singh
- Molecular Biology Research Lab, Department of Zoology, Deshbandhu College, University of Delhi, Kalkaji, Delhi-110019, India
| | - Ragini Singh
- Department of Botany, Hansraj College, University of Delhi, Delhi-110007, India
| | - Sumit Kumar
- Molecular Biology Research Lab, Department of Zoology, Deshbandhu College, University of Delhi, Kalkaji, Delhi-110019, India
| | - Sanjay Kumar Singh
- Kentucky Tobacco Research and Development Center, University of Kentucky, Lexington, KY, 40546, USA
| | - Indrakant Kumar Singh
- Molecular Biology Research Lab, Department of Zoology, Deshbandhu College, University of Delhi, Kalkaji, Delhi-110019, India. .,DBC i4 Centre, Deshbandhu College, University of Delhi, Kalkaji, Delhi-110019, India.
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Chen H, Raffaele S, Dong S. Silent control: microbial plant pathogens evade host immunity without coding sequence changes. FEMS Microbiol Rev 2021; 45:6095737. [PMID: 33440001 DOI: 10.1093/femsre/fuab002] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2020] [Accepted: 01/11/2021] [Indexed: 12/16/2022] Open
Abstract
Both animals and plants have evolved a robust immune system to surveil and defeat invading pathogenic microbes. Evasion of host immune surveillance is the key for pathogens to initiate successful infection. To evade the host immunity, plant pathogens evolved a variety of strategies such as masking themselves from host immune recognitions, blocking immune signaling transductions, reprogramming immune responses and adapting to immune microenvironmental changes. Gain of new virulence genes, sequence and structural variations enables plant pathogens to evade host immunity through changes in the genetic code. However, recent discoveries demonstrated that variations at the transcriptional, post-transcriptional, post-translational and glycome level enable pathogens to cope with the host immune system without coding sequence changes. The biochemical modification of pathogen associated molecular patterns and silencing of effector genes emerged as potent ways for pathogens to hide from host recognition. Altered processing in mRNA activities provide pathogens with resilience to microenvironment changes. Importantly, these hiding variants are directly or indirectly modulated by catalytic enzymes or enzymatic complexes and cannot be revealed by classical genomics alone. Unveiling these novel host evasion mechanisms in plant pathogens enables us to better understand the nature of plant disease and pinpoints strategies for rational diseases management in global food protection.
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Affiliation(s)
- Han Chen
- Department of Plant Pathology and The Key Laboratory of Plant Immunity, Nanjing Agricultural University, 210095, Nanjing, China
| | - Sylvain Raffaele
- Laboratoire des Interactions Plantes-Microorganismes, INRAE, CNRS, 24 Chemin de Borde Rouge - Auzeville, CS52627, F31326 Castanet Tolosan Cedex, France
| | - Suomeng Dong
- Department of Plant Pathology and The Key Laboratory of Plant Immunity, Nanjing Agricultural University, 210095, Nanjing, China
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Almeida-Silva F, Moharana KC, Machado FB, Venancio TM. Exploring the complexity of soybean (Glycine max) transcriptional regulation using global gene co-expression networks. PLANTA 2020; 252:104. [PMID: 33196909 DOI: 10.1007/s00425-020-03499-8] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/09/2020] [Accepted: 10/15/2020] [Indexed: 06/11/2023]
Abstract
MAIN CONCLUSION We report a soybean gene co-expression network built with data from 1284 RNA-Seq experiments, which was used to identify important regulators, modules and to elucidate the fates of gene duplicates. Soybean (Glycine max (L.) Merr.) is one of the most important crops worldwide, constituting a major source of protein and edible oil. Gene co-expression networks (GCN) have been extensively used to study transcriptional regulation and evolution of genes and genomes. Here, we report a soybean GCN using 1284 publicly available RNA-Seq samples from 15 distinct tissues. We found modules that are differentially regulated in specific tissues, comprising processes such as photosynthesis, gluconeogenesis, lignin metabolism, and response to biotic stress. We identified transcription factors among intramodular hubs, which probably integrate different pathways and shape the transcriptional landscape in different conditions. The top hubs for each module tend to encode proteins with critical roles, such as succinate dehydrogenase and RNA polymerase subunits. Importantly, gene essentiality was strongly correlated with degree centrality and essential hubs were enriched in genes involved in nucleic acids metabolism and regulation of cell replication. Using a guilt-by-association approach, we predicted functions for 93 of 106 hubs without functional description in soybean. Most of the duplicated genes had different transcriptional profiles, supporting their functional divergence, although paralogs originating from whole-genome duplications (WGD) are more often preserved in the same module than those from other mechanisms. Together, our results highlight the importance of GCN analysis in unraveling key functional aspects of the soybean genome, in particular those associated with hub genes and WGD events.
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Affiliation(s)
- Fabricio Almeida-Silva
- Laboratório de Química e Função de Proteínas e Peptídeos, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Av. Alberto Lamego 2000, P5, sala 217, Campos dos Goytacazes, RJ, Brazil
| | - Kanhu C Moharana
- Laboratório de Química e Função de Proteínas e Peptídeos, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Av. Alberto Lamego 2000, P5, sala 217, Campos dos Goytacazes, RJ, Brazil
| | - Fabricio B Machado
- Laboratório de Química e Função de Proteínas e Peptídeos, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Av. Alberto Lamego 2000, P5, sala 217, Campos dos Goytacazes, RJ, Brazil
| | - Thiago M Venancio
- Laboratório de Química e Função de Proteínas e Peptídeos, Centro de Biociências e Biotecnologia, Universidade Estadual do Norte Fluminense Darcy Ribeiro, Av. Alberto Lamego 2000, P5, sala 217, Campos dos Goytacazes, RJ, Brazil.
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Pan H, Yang X, Romeis J, Siegfried BD, Zhou X. Dietary RNAi toxicity assay exhibits differential responses to ingested dsRNAs among lady beetles. PEST MANAGEMENT SCIENCE 2020; 76:3606-3614. [PMID: 32400940 DOI: 10.1002/ps.5894] [Citation(s) in RCA: 28] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/29/2020] [Revised: 04/21/2020] [Accepted: 05/13/2020] [Indexed: 05/23/2023]
Abstract
BACKGROUND Most recently, major federal regulatory agencies deregulated an in planta RNA interference (RNAi) trait against a devastating corn pest, the western corn rootworm Diabrotica virgifera virgifera, in the United States and Canada. The impact of double-stranded RNA (dsRNA) plant-incorporated protectants (PIPs) and dietary RNAi to non-target organisms, however, still needs further investigation. In this study, we assessed the potential risks of a Diabrotica virgifera virgifera active dsRNA to a group of predatory biological control agents, including Hippodamia convergens, Harmonia axyridis, Coleomegilla maculata, and Coccinella septempunctata. The overarching hypothesis is that the insecticidal dsRNA targeting Diabrotica virgifera virgifera has no or negligible adverse effect on lady beetles. RESULTS A 400-bp fragment with the highest sequence similarity between target and tested species was selected as the template for dsRNA synthesis. For the dietary RNAi toxicity assay, newly hatched first instar larvae were administered with v-ATPase A dsRNAs designed from Diabrotica virgifera virgifera and the four lady beetles, respectively. A dsRNA from β-glucuronidase (GUS), a plant gene, and H2 O were served as the negative controls. The endpoint included both sub-organismal (gene expression), and organismal (survival rate, development time, pupa and adult weight) measurements. The results from dietary RNAi toxicity assay demonstrate significantly impacts of Diabrotica virgifera virgifera-active dsRNAs on lady beetles under the worst-case scenario at both transcriptional and phenotypic level. Interestingly, substantial differences among the four lady beetle species were observed toward the ingested exogenous dsRNAs. CONCLUSION Such differential response to dietary RNAi may shed light on the mechanisms underlying the mode-of-action of RNAi-based biopesticides. © 2020 Society of Chemical Industry.
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Affiliation(s)
- Huipeng Pan
- Key Laboratory of Bio-Pesticide Innovation and Application of Guangdong Province, South China Agricultural University, Guangzhou, China
- Department of Entomology, University of Kentucky, Lexington, KY, USA
| | - Xiaowei Yang
- Department of Entomology, University of Kentucky, Lexington, KY, USA
| | - Jörg Romeis
- Agroscope, Research Division Agroecology and Environment, Zurich, Switzerland
| | - Blair D Siegfried
- Department of Entomology and Nematology, University of Florida, Gainesville, FL, USA
| | - Xuguo Zhou
- Department of Entomology, University of Kentucky, Lexington, KY, USA
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de Mello US, Vidigal PMP, Vital CE, Tomaz AC, de Figueiredo M, Peternelli LA, Barbosa MHP. An overview of the transcriptional responses of two tolerant and susceptible sugarcane cultivars to borer (Diatraea saccharalis) infestation. Funct Integr Genomics 2020; 20:839-855. [PMID: 33068201 DOI: 10.1007/s10142-020-00755-8] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2020] [Revised: 07/28/2020] [Accepted: 08/03/2020] [Indexed: 02/07/2023]
Abstract
Diatraea saccharalis constitutes a threat to the sugarcane productivity, and obtaining borer tolerant cultivars is an alternative method of control. Although there are studies about the relationship between the interaction of D. saccharalis with sugarcane, little is known about the molecular and genomic basis of defense mechanisms that confer tolerance to sugarcane cultivars. Here, we analyzed the transcriptional profile of two sugarcane cultivars in response to borer attack, RB867515 and SP80-3280, which are considered tolerant and sensitive to the borer attack, respectively. A sugarcane genome and transcriptome were used for read mapping. Differentially expressed transcripts and genes were identified and termed to as DETs and DEGs, according to the sugarcane database adopted. A total of 745 DETs and 416 DEGs were identified (log2|ratio| > 0.81; FDR corrected P value ≤ 0.01) after borer infestation. Following annotation of up- and down-regulated DETs and DEGs by similarity searches, the sugarcane cultivars demonstrated an up-regulation of jasmonic acid (JA), ethylene (ET), and defense protein genes, as well as a down-regulation of pathways involved in photosynthesis and energy metabolism. The expression analysis also highlighted that RB867515 cultivar is possibly more transcriptionally activated after 12 h from infestation than SP80-3280, which could imply in quicker responses by probably triggering more defense-related genes and mediating metabolic pathways to cope with borer attack.
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Affiliation(s)
| | - Pedro Marcus Pereira Vidigal
- Núcleo de Análise de Biomoléculas (NuBioMol), Universidade Federal de Viçosa (UFV), Viçosa, Minas Gerais, Brazil.
| | - Camilo Elber Vital
- Department of Biochemistry and Molecular Biology, Universidade Federal de Viçosa (UFV), Viçosa, Minas Gerais, Brazil
| | - Adriano Cirino Tomaz
- Department of Agronomy, Universidade Federal de Viçosa (UFV), Viçosa, Minas Gerais, Brazil
| | - Milene de Figueiredo
- Department of Agronomy, Universidade Federal de Viçosa (UFV), Viçosa, Minas Gerais, Brazil
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Lu X, Wang B, Cai X, Chen S, Chen Z, Xin Z. Feeding on tea GH19 chitinase enhances tea defense responses induced by regurgitant derived from Ectropis grisescens. PHYSIOLOGIA PLANTARUM 2020; 169:529-543. [PMID: 32196677 DOI: 10.1111/ppl.13094] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2019] [Revised: 01/15/2020] [Accepted: 02/02/2020] [Indexed: 06/10/2023]
Abstract
Multiple isoforms of chitinases participate in plant defense against outside invaders. However, the functions of hydrolase family 19 (GH19) chitinases on pest control remain largely unknown. Here we reported the isolation and functional analysis of a gene CsChi19, which encodes a GH19 endochitinase protein of 332 amino acid residues from tea plant (Camellia sinensis). CsChi19 expression levels were upregulated in response to mechanical wounding, infestation by two important pests: the tea geometrid Ectropis grisescens and the tea green leafhopper Empoasca (Matsumurasca) onukii, a fungal pathogen Colletotrichum fructicola, and treatment with two phytohormones: jasmonic acid (JA) and salicylic acid. CsChi19 was heterologously expressed in Escherichia coli, and its catalytic function was further elucidated. The protein could hydrolyze colloidal chitin, and the optimum temperature and pH for its activity was 40°C and pH 5.0. CsChi19 were found to be toxic to tea pests when they were fed on artificial diets containing this protein. Interestingly, the regurgitant derived from E. grisescens fed with artificial diets containing CsChi19 protein induced stronger expression of CsMPK3, more JA burst, more accumulation of defense-related secondary metabolites, and more emission of volatiles than the regurgitant derived from E. grisescens fed only with artificial diets. Our results provide first evidence that CsChi19 is involved in mediating a novel defense mechanism of tea plant through altering the composition of the regurgitant.
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Affiliation(s)
- Xiaotong Lu
- Tea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310008, China
- Key Laboratory of Tea Biology and Resource Utilization of Ministry of Agriculture, Hangzhou, 310008, China
| | - Baohui Wang
- Zhejiang Hospital of Traditional Chinese Medicine, Zhejiang Chinese Medical University, Hangzhou, 310006, China
| | - Xiaoming Cai
- Tea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310008, China
- Key Laboratory of Tea Biology and Resource Utilization of Ministry of Agriculture, Hangzhou, 310008, China
| | - Shenglong Chen
- Tea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310008, China
- Key Laboratory of Tea Biology and Resource Utilization of Ministry of Agriculture, Hangzhou, 310008, China
| | - Zongmao Chen
- Tea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310008, China
- Key Laboratory of Tea Biology and Resource Utilization of Ministry of Agriculture, Hangzhou, 310008, China
| | - Zhaojun Xin
- Tea Research Institute, Chinese Academy of Agricultural Sciences, Hangzhou, 310008, China
- Key Laboratory of Tea Biology and Resource Utilization of Ministry of Agriculture, Hangzhou, 310008, China
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13
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Hunter CT, Block AK, Christensen SA, Li QB, Rering C, Alborn HT. Setaria viridis as a model for translational genetic studies of jasmonic acid-related insect defenses in Zea mays. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2020; 291:110329. [PMID: 31928686 DOI: 10.1016/j.plantsci.2019.110329] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/12/2019] [Revised: 10/24/2019] [Accepted: 11/01/2019] [Indexed: 06/10/2023]
Abstract
Little is known regarding insect defense pathways in Setaria viridis (setaria), a model system for panicoid grasses, including Zea mays (maize). It is thus of interest to compare insect herbivory responses of setaria and maize. Here we use metabolic, phylogenetic, and gene expression analyses to measure a subset of jasmonic acid (JA)-related defense responses to leaf-chewing caterpillars. Phylogenetic comparisons of known defense-related maize genes were used to identify putative orthologs in setaria, and candidates were tested by quantitative PCR to determine transcriptional responses to insect challenge. Our findings show that while much of the core JA-related metabolic and genetic responses appear conserved between setaria and maize, production of downstream secondary metabolites such as benzoxazinoids and herbivore-induced plant volatiles are dissimilar. This diversity of chemical defenses and gene families involved in secondary metabolism among grasses presents new opportunities for cross species engineering. The high degree of genetic similarity and ease of orthologous gene identification between setaria and maize make setaria an excellent species for translational genetic studies, but the species specificity of downstream insect defense chemistry makes some pathways unamenable to cross-species comparisons.
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Affiliation(s)
- Charles T Hunter
- Chemistry Research Unit, USDA Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, 32608, USA.
| | - Anna K Block
- Chemistry Research Unit, USDA Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, 32608, USA
| | - Shawn A Christensen
- Chemistry Research Unit, USDA Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, 32608, USA
| | - Qin-Bao Li
- Chemistry Research Unit, USDA Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, 32608, USA
| | - Caitlin Rering
- Chemistry Research Unit, USDA Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, 32608, USA
| | - Hans T Alborn
- Chemistry Research Unit, USDA Agricultural Research Service, Center for Medical, Agricultural and Veterinary Entomology, Gainesville, FL, 32608, USA
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Liu X, Cooper AMW, Yu Z, Silver K, Zhang J, Zhu KY. Progress and prospects of arthropod chitin pathways and structures as targets for pest management. PESTICIDE BIOCHEMISTRY AND PHYSIOLOGY 2019; 161:33-46. [PMID: 31685194 DOI: 10.1016/j.pestbp.2019.08.002] [Citation(s) in RCA: 35] [Impact Index Per Article: 5.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/23/2019] [Revised: 08/07/2019] [Accepted: 08/07/2019] [Indexed: 06/10/2023]
Abstract
Chitin is a structural component of the arthropod cuticular exoskeleton and the peritrophic matrix of the gut, which play crucial roles in growth and development. In the past few decades, our understanding of the composition, biosynthesis, assembly, degradation, and regulation of chitinous structures has increased. Many chemicals have been developed that target chitin biosynthesis (benzoyphenyl ureas, etoxazole), chitin degradation (allosamidin, psammaplin), and chitin regulation (benzoyl hydrazines), thus resulting in molting deformities and lethality. In addition, proteins that disrupt chitin structures, such as lectins, proteases, and chitinases have been utilized to halt feeding and induce mortality. Chitin-degrading enzymes, such as chitinases are also useful for improving the efficacy of bio-insecticides. Transgenic plants, baculoviruses, fungi, and bacteria have been engineered to express chitinases from a variety of organisms for control of arthropod pests. In addition, RNA interference targeting genes involved in chitin pathways and structures are now being investigated for the development of environmentally friendly pest management strategies. This review describes the chemicals and proteins used to target chitin structures and enzymes for arthropod pest management, as well as pest management strategies based upon these compounds, such as plant-incorporated-protectants and recombinant entomopathogens. Recent advances in RNA interference-based pest management, and how this technology can be used to target chitin pathways and structures are also discussed.
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Affiliation(s)
- Xiaojian Liu
- Research Institute of Applied Biology, Shanxi University, Taiyuan, Shanxi 030006, China
| | | | - Zhitao Yu
- Department of Entomology, Kansas State University, Manhattan, KS 66506, USA
| | - Kristopher Silver
- Department of Entomology, Kansas State University, Manhattan, KS 66506, USA
| | - Jianzhen Zhang
- Research Institute of Applied Biology, Shanxi University, Taiyuan, Shanxi 030006, China.
| | - Kun Yan Zhu
- Department of Entomology, Kansas State University, Manhattan, KS 66506, USA.
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15
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Sierra-Gómez Y, Rodríguez-Hernández A, Cano-Sánchez P, Gómez-Velasco H, Hernández-Santoyo A, Siliqi D, Rodríguez-Romero A. A biophysical and structural study of two chitinases from Agave tequilana and their potential role as defense proteins. FEBS J 2019; 286:4778-4796. [PMID: 31291689 DOI: 10.1111/febs.14993] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/21/2018] [Revised: 05/04/2019] [Accepted: 07/08/2019] [Indexed: 01/09/2023]
Abstract
Plant chitinases are enzymes that have several functions, including providing protection against pathogens. Agave tequilana is an economically important plant that is poorly studied. Here, we identified a chitinase from short reads of the A. tequilana transcriptome (AtChi1). A second chitinase, differing by only six residues from the first, was isolated from total RNA of plants infected with Fusarium oxysporum (AtChi2). Both enzymes were overexpressed in Escherichia coli and analysis of their sequences indicated that they belong to the class I glycoside hydrolase family19, whose members exhibit two domains: a carbohydrate-binding module and a catalytic domain, connected by a flexible linker. Activity assays and thermal shift experiments demonstrated that the recombinant Agave enzymes are highly thermostable acidic endochitinases with Tm values of 75 °C and 71 °C. Both exhibit a molecular mass close to 32 kDa, as determined by MALDI-TOF, and experimental pIs of 3.7 and 3.9. Coupling small-angle x-ray scattering information with homology modeling and docking simulations allowed us to structurally characterize both chitinases, which notably show different interactions in the binding groove. Even when the six different amino acids are all exposed to solvent in the loops located near the linker and opposite to the binding site, they confer distinct kinetic parameters against colloidal chitin and similar affinity for (GlnNAc)6, as shown by isothermal titration calorimetry. Interestingly, binding is more enthalpy-driven for AtChi2. Whereas the physiological role of these chitinases remains unknown, we demonstrate that they exhibit important antifungal activity against chitin-rich fungi such as Aspergillus sp. DATABASE: SAXS structural data are available in the SASBDB database with accession numbers SASDDE7 and SASDDA6. ENZYMES: Chitinases (EC3.2.1.14).
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Affiliation(s)
- Yusvel Sierra-Gómez
- Instituto de Química, Universidad Nacional Autónoma de México, Ciudad de México, Mexico
| | | | - Patricia Cano-Sánchez
- Instituto de Química, Universidad Nacional Autónoma de México, Ciudad de México, Mexico
| | - Homero Gómez-Velasco
- Instituto de Química, Universidad Nacional Autónoma de México, Ciudad de México, Mexico
| | | | - Dritan Siliqi
- Istituto di Cristallografia, Consiglio Nazionale delle Ricerche, Bari, Italy
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16
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Navarro-González SS, Ramírez-Trujillo JA, Peña-Chora G, Gaytán P, Roldán-Salgado A, Corzo G, Lina-García LP, Hernández-Velázquez VM, Suárez-Rodríguez R. Enhanced Tolerance against a Fungal Pathogen and Insect Resistance in Transgenic Tobacco Plants Overexpressing an Endochitinase Gene from Serratia marcescens. Int J Mol Sci 2019; 20:E3482. [PMID: 31315176 PMCID: PMC6679225 DOI: 10.3390/ijms20143482] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2019] [Revised: 07/11/2019] [Accepted: 07/14/2019] [Indexed: 11/16/2022] Open
Abstract
In this study we cloned a chitinase gene (SmchiC), from Serratia marcescens isolated from the corpse of a Diatraea magnifactella lepidopteran, which is an important sugarcane pest. The chitinase gene SmchiC amplified from the S. marcescens genome was cloned into the transformation vector p2X35SChiC and used to transform tobacco (Nicotiana tabacum L. cv Petit Havana SR1). The resistance of these transgenic plants to the necrotrophic fungus Botrytis cinerea and to the pest Spodoptera frugiperda was evaluated: both the activity of chitinase as well as the resistance against B. cinerea and S. frugiperda was significantly higher in transgenic plants compared to the wild-type.
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Affiliation(s)
- Samantha Sarai Navarro-González
- Centro de Investigación en Biotecnología, Universidad Autónoma del Estado de Morelos, Av. Universidad 1001, Col. Chamilpa, Cuernavaca, Morelos 62209, Mexico
| | - José Augusto Ramírez-Trujillo
- Centro de Investigación en Biotecnología, Universidad Autónoma del Estado de Morelos, Av. Universidad 1001, Col. Chamilpa, Cuernavaca, Morelos 62209, Mexico
| | - Guadalupe Peña-Chora
- Centro de Investigaciones Biológicas, Universidad Autónoma del Estado de Morelos, Av. Universidad 1001, Col. Chamilpa, Cuernavaca, Morelos 62209, Mexico
| | - Paul Gaytán
- Instituto de Biotecnología, Universidad Nacional Autónoma de México, Av. Universidad 2001, Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico
| | - Abigail Roldán-Salgado
- Instituto de Biotecnología, Universidad Nacional Autónoma de México, Av. Universidad 2001, Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico
| | - Gerardo Corzo
- Instituto de Biotecnología, Universidad Nacional Autónoma de México, Av. Universidad 2001, Col. Chamilpa, Cuernavaca, Morelos 62210, Mexico
| | - Laura Patricia Lina-García
- Centro de Investigación en Biotecnología, Universidad Autónoma del Estado de Morelos, Av. Universidad 1001, Col. Chamilpa, Cuernavaca, Morelos 62209, Mexico
| | - Víctor Manuel Hernández-Velázquez
- Centro de Investigación en Biotecnología, Universidad Autónoma del Estado de Morelos, Av. Universidad 1001, Col. Chamilpa, Cuernavaca, Morelos 62209, Mexico
| | - Ramón Suárez-Rodríguez
- Centro de Investigación en Biotecnología, Universidad Autónoma del Estado de Morelos, Av. Universidad 1001, Col. Chamilpa, Cuernavaca, Morelos 62209, Mexico.
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Tetreau G, Wang P. Chitinous Structures as Potential Targets for Insect Pest Control. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2019; 1142:273-292. [PMID: 31102251 DOI: 10.1007/978-981-13-7318-3_13] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
Chitinous structures are physiologically fundamental in insects. They form the insect exoskeleton, play important roles in physiological systems and provide physical, chemical and biological protections in insects. As critically important structures in insects, chitinous structures are attractive target sites for the development of new insect-pest-control strategies. Chitinous structures in insects are complex and their formation and maintenance are dynamically regulated with the growth and development of insects. In the past few decades, studies on insect chitinous structures have shed lights on the physiological functions, compositions, structural formation, and regulation of the chitinous structures. Current understanding of the chitinous structures has indicated opportunities for exploring new target sites for insect control. Mechanisms to disrupt chitinous structures in insects have been studied and strategies for the potential development of new means of insect control by targeting chitinous structures have been proposed and are practically to be explored.
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Affiliation(s)
- Guillaume Tetreau
- University of Grenoble Alpes, CNRS, CEA, IBS, 38000, Grenoble, France
| | - Ping Wang
- Department of Entomology, Cornell University, Geneva, NY, 14456, USA.
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18
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The Effect of Bacillus thuringiensis israelensis (Bti) as a Microbial Control Agent against Musca domestica in Makkah Region. JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2018. [DOI: 10.22207/jpam.12.4.44] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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19
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Effect of Ulva lactuca Aqueous Extract on Growth, Minerals, Chlorophyll Content, Rubisco Activity and Rubisco Activase in Zea mays Seedlings. JOURNAL OF PURE AND APPLIED MICROBIOLOGY 2018. [DOI: 10.22207/jpam.12.2.19] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022] Open
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20
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Abdel-Latif A, Osman G. Comparison of three genomic DNA extraction methods to obtain high DNA quality from maize. PLANT METHODS 2017; 13:1. [PMID: 28053646 PMCID: PMC5209869 DOI: 10.1186/s13007-016-0152-4] [Citation(s) in RCA: 120] [Impact Index Per Article: 15.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/26/2016] [Accepted: 11/29/2016] [Indexed: 05/07/2023]
Abstract
BACKGROUND The world's top three cereals, based on their monetary value, are rice, wheat, and corn. In cereal crops, DNA extraction is difficult owing to rigid non-cellulose components in the cell wall of leaves and high starch and protein content in grains. The advanced techniques in molecular biology require pure and quick extraction of DNA. The majority of existing DNA extraction methods rely on long incubation and multiple precipitations or commercially available kits to produce contaminant-free high molecular weight DNA. RESULTS In this study, we compared three different methods used for the isolation of high-quality genomic DNA from the grains of cereal crop, Zea mays, with minor modifications. The DNA from the grains of two maize hybrids, M10 and M321, was extracted using extraction methods DNeasy Qiagen Plant Mini Kit, CTAB-method (with/without 1% PVP) and modified Mericon extraction. Genes coding for 45S ribosomal RNA are organized in tandem arrays of up to several thousand copies and contain codes for 18S, 5.8S and 26S rRNA units separated by internal transcribed spacers ITS1 and ITS2. While the rRNA units are evolutionary conserved, ITS regions show high level of interspecific divergence and have been used frequently in genetic diversity and phylogenetic studies. In this study, the genomic DNA was then amplified with PCR using primers specific for ITS gene. PCR products were then visualized on agarose gel. CONCLUSION The modified Mericon extraction method was found to be the most efficient DNA extraction method, capable to provide high DNA yields with better quality, affordable cost and less time.
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Affiliation(s)
- Amani Abdel-Latif
- Department of Botany and Microbiology, Faculty of Science, Alexandria University, Alexandria, Egypt
| | - Gamal Osman
- Department of Biology, Faculty of Applied Sciences, Umm Al-Qura University, PO Box 715, Makkah, 21955 Kingdom of Saudi Arabia
- Agricultural Genetic Engineering Research Institute (AGERI), Giza, 12619 Egypt
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Alberts JF, van Zyl WH, Gelderblom WCA. Biologically Based Methods for Control of Fumonisin-Producing Fusarium Species and Reduction of the Fumonisins. Front Microbiol 2016; 7:548. [PMID: 27199904 PMCID: PMC4845651 DOI: 10.3389/fmicb.2016.00548] [Citation(s) in RCA: 51] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/28/2016] [Accepted: 04/04/2016] [Indexed: 12/03/2022] Open
Abstract
Infection by the fumonisin-producing Fusarium spp. and subsequent fumonisin contamination of maize adversely affect international trade and economy with deleterious effects on human and animal health. In developed countries high standards of the major food suppliers and retailers are upheld and regulatory controls deter the importation and local marketing of fumonisin-contaminated food products. In developing countries regulatory measures are either lacking or poorly enforced, due to food insecurity, resulting in an increased mycotoxin exposure. The lack and poor accessibility of effective and environmentally safe control methods have led to an increased interest in practical and biological alternatives to reduce fumonisin intake. These include the application of natural resources, including plants, microbial cultures, genetic material thereof, or clay minerals pre- and post-harvest. Pre-harvest approaches include breeding for resistant maize cultivars, introduction of biocontrol microorganisms, application of phenolic plant extracts, and expression of antifungal proteins and fumonisin degrading enzymes in transgenic maize cultivars. Post-harvest approaches include the removal of fumonisins by natural clay adsorbents and enzymatic degradation of fumonisins through decarboxylation and deamination by recombinant carboxylesterase and aminotransferase enzymes. Although, the knowledge base on biological control methods has expanded, only a limited number of authorized decontamination products and methods are commercially available. As many studies detailed the use of natural compounds in vitro, concepts in reducing fumonisin contamination should be developed further for application in planta and in the field pre-harvest, post-harvest, and during storage and food-processing. In developed countries an integrated approach, involving good agricultural management practices, hazard analysis and critical control point (HACCP) production, and storage management, together with selected biologically based treatments, mild chemical and physical treatments could reduce fumonisin contamination effectively. In rural subsistence farming communities, simple, practical, and culturally acceptable hand-sorting, maize kernel washing, and dehulling intervention methods proved to be effective as a last line of defense for reducing fumonisin exposure. Biologically based methods for control of fumonisin-producing Fusarium spp. and decontamination of the fumonisins could have potential commercial application, while simple and practical intervention strategies could also impact positively on food safety and security, especially in rural populations reliant on maize as a dietary staple.
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Affiliation(s)
- Johanna F. Alberts
- Mycotoxicology and Chemoprevention Research Group, Institute of Biomedical and Microbial Biotechnology, Cape Peninsula University of TechnologyBellville, South Africa
| | - Willem H. van Zyl
- Microbiology Department, Stellenbosch UniversityStellenbosch, South Africa
| | - Wentzel C. A. Gelderblom
- Mycotoxicology and Chemoprevention Research Group, Institute of Biomedical and Microbial Biotechnology, Cape Peninsula University of TechnologyBellville, South Africa
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