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Cosmidis J. Will tomorrow's mineral materials be grown? Microb Biotechnol 2023; 16:1713-1722. [PMID: 37522764 PMCID: PMC10443349 DOI: 10.1111/1751-7915.14298] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/16/2023] [Revised: 05/31/2023] [Accepted: 06/06/2023] [Indexed: 08/01/2023] Open
Abstract
Biomineralization, the capacity to form minerals, has evolved in a great diversity of bacterial lineages as an adaptation to different environmental conditions and biological functions. Microbial biominerals often display original properties (morphology, composition, structure, association with organics) that significantly differ from those of abiotically formed counterparts, altogether defining the 'mineral phenotype'. In principle, it should be possible to take advantage of microbial biomineralization processes to design and biomanufacture advanced mineral materials for a range of technological applications. In practice, this has rarely been done so far and only for a very limited number of biomineral types. This is mainly due to our poor understanding of the underlying molecular mechanisms controlling microbial biomineralization pathways, preventing us from developing bioengineering strategies aiming at improving biomineral properties for different applications. Another important challenge is the difficulty to upscale microbial biomineralization from the lab to industrial production. Addressing these challenges will require combining expertise from environmental microbiologists and geomicrobiologists, who have historically been working at the forefront of research on microbe-mineral interactions, alongside bioengineers and material scientists. Such interdisciplinary efforts may in the future allow the emergence of a mineral biomanufacturing industry, a critical tool towards the development more sustainable and circular bioeconomies.
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Affiliation(s)
- Julie Cosmidis
- Department of Earth SciencesUniversity of OxfordOxfordUK
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2
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Tomoe R, Fujimoto K, Tanaka T, Arakaki A, Kisailus D, Yoshino T. Lipid membrane modulated control of magnetic nanoparticles within bacterial systems. J Biosci Bioeng 2023; 136:253-260. [PMID: 37422334 DOI: 10.1016/j.jbiosc.2023.06.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/28/2023] [Revised: 06/13/2023] [Accepted: 06/20/2023] [Indexed: 07/10/2023]
Abstract
Bacterial magnetosomes synthesized by the magnetotactic bacterium Magnetospirillum magneticum are suitable for biomedical and biotechnological applications because of their high level of chemical purity of mineral with well-defined morphological features and a biocompatible lipid bilayer coating. However, utilizations of native magnetosomes are not sufficient for maximum effectiveness in many applications as the appropriate particle size differs. In this study, a method to control magnetosome particle size is developed for integration into targeted technological applications. The size and morphology of magnetosome crystals are highly regulated by the complex interactions of magnetosome synthesis-related genes; however, these interactions have not been fully elucidated. In contrast, previous studies have shown a positive correlation between vesicle and crystal sizes. Therefore, control of the magnetosome vesicle size is tuned by modifying the membrane lipid composition. Exogenous phospholipid synthesis pathways have been genetically introduced into M. magneticum. The experimental results show that these phospholipids altered the properties of the magnetosome membrane vesicles, which yielded larger magnetite crystal sizes. The genetic engineering approach presented in this study is shown to be useful for controlling magnetite crystal size without involving complex interactions of magnetosome synthesis-related genes.
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Affiliation(s)
- Ryoto Tomoe
- Division of Biotechnology and Life Science, Institute of Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei, Tokyo 184-8588, Japan
| | - Kazushi Fujimoto
- Division of Biotechnology and Life Science, Institute of Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei, Tokyo 184-8588, Japan
| | - Tsuyoshi Tanaka
- Division of Biotechnology and Life Science, Institute of Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei, Tokyo 184-8588, Japan
| | - Atsushi Arakaki
- Division of Biotechnology and Life Science, Institute of Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei, Tokyo 184-8588, Japan
| | - David Kisailus
- Department of Materials Science and Engineering, University of California, Irvine, CA 92697, USA
| | - Tomoko Yoshino
- Division of Biotechnology and Life Science, Institute of Engineering, Tokyo University of Agriculture and Technology, 2-24-16 Naka-cho, Koganei, Tokyo 184-8588, Japan.
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3
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Biogeochemical fingerprinting of magnetotactic bacterial magnetite. Proc Natl Acad Sci U S A 2022; 119:e2203758119. [PMID: 35901209 PMCID: PMC9351444 DOI: 10.1073/pnas.2203758119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/30/2023] Open
Abstract
Biominerals are important archives of the presence of life and environmental processes in the geological record. However, ascribing a clear biogenic nature to minerals with nanometer-sized dimensions has proven challenging. Identifying hallmark features of biologically controlled mineralization is particularly important for the case of magnetite crystals, resembling those produced by magnetotactic bacteria (MTB), which have been used as evidence of early prokaryotic life on Earth and in meteorites. We show here that magnetite produced by MTB displays a clear coupled C-N signal that is absent in abiogenic and/or biomimetic (protein-mediated) nanometer-sized magnetite. We attribute the presence of this signal to intracrystalline organic components associated with proteins involved in magnetosome formation by MTB. These results demonstrate that we can assign a biogenic origin to nanometer-sized magnetite crystals, and potentially other biominerals of similar dimensions, using unique geochemical signatures directly measured at the nanoscale. This finding is significant for searching for the earliest presence of life in the Earth's geological record and prokaryotic life on other planets.
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4
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A protease-mediated switch regulates the growth of magnetosome organelles in Magnetospirillum magneticum. Proc Natl Acad Sci U S A 2022; 119:2111745119. [PMID: 35110403 PMCID: PMC8833152 DOI: 10.1073/pnas.2111745119] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 10/26/2021] [Indexed: 11/18/2022] Open
Abstract
Biomineralization, the process by which elaborate three-dimensional structures are built out of organic and inorganic molecules, is central to health and survival of many organisms. In some magnetotactic bacteria, the growth of magnetosome membranes is closely correlated to the progression of mineral formation. However, the molecular mechanisms of such regulation are not clear. We show that the serine protease MamE links magnetosome membrane growth to the controlled production of magnetite nanoparticles through the processing of mineral-associated MamD protein. Our results indicate that membrane growth directly controls mineral growth and shed light on how an organelle’s size can determine its physiological output. Manipulation of the MamE pathway may also open the door for control of nanoparticle size in future biotechnological applications. Magnetosomes are lipid-bound organelles that direct the biomineralization of magnetic nanoparticles in magnetotactic bacteria. Magnetosome membranes are not uniform in size and can grow in a biomineralization-dependent manner. However, the underlying mechanisms of magnetosome membrane growth regulation remain unclear. Using cryoelectron tomography, we systematically examined mutants with defects at various stages of magnetosome formation to identify factors involved in controlling membrane growth. We found that a conserved serine protease, MamE, plays a key role in magnetosome membrane growth regulation. When the protease activity of MamE is disrupted, magnetosome membrane growth is restricted, which, in turn, limits the size of the magnetite particles. Consistent with this finding, the upstream regulators of MamE protease activity, MamO and MamM, are also required for magnetosome membrane growth. We then used a combination of candidate and comparative proteomics approaches to identify Mms6 and MamD as two MamE substrates. Mms6 does not appear to participate in magnetosome membrane growth. However, in the absence of MamD, magnetosome membranes grow to a larger size than the wild type. Furthermore, when the cleavage of MamD by MamE protease is blocked, magnetosome membrane growth and biomineralization are severely inhibited, phenocopying the MamE protease-inactive mutant. We therefore propose that the growth of magnetosome membranes is controlled by a protease-mediated switch through processing of MamD. Overall, our work shows that, like many eukaryotic systems, bacteria control the growth and size of biominerals by manipulating the physical properties of intracellular organelles.
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5
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Baaziz W, Ghica C, Cypriano J, Abreu F, Anselme K, Ersen O, Farina M, Werckmann J. New Phenotype and Mineralization of Biogenic Iron Oxide in Magnetotactic Bacteria. NANOMATERIALS 2021; 11:nano11123189. [PMID: 34947538 PMCID: PMC8706698 DOI: 10.3390/nano11123189] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 10/20/2021] [Revised: 11/22/2021] [Accepted: 11/23/2021] [Indexed: 12/15/2022]
Abstract
Many magnetotactic bacteria (MTB) biomineralize magnetite crystals that nucleate and grow inside intracellular membranous vesicles originating from invaginations of the cytoplasmic membrane. The crystals together with their surrounding membranes are referred to as magnetosomes. Magnetosome magnetite crystals nucleate and grow using iron transported inside the vesicle by specific proteins. Here, we tackle the question of the organization of magnetosomes, which are always described as constituted by linear chains of nanocrystals. In addition, it is commonly accepted that the iron oxide nanocrystals are in the magnetite-based phase. We show, in the case of a wild species of coccus-type bacterium, that there is a double organization of the magnetosomes, relatively perpendicular to each other, and that the nanocrystals are in fact maghemite. These findings were obtained, respectively, by using electron tomography of whole mounts of cells directly from the environment and high-resolution transmission electron microscopy and diffraction. Structure simulations were performed with the MacTempas software. This study opens new perspectives on the diversity of phenotypes within MTBs and allows to envisage other mechanisms of nucleation and formation of biogenic iron oxide crystals.
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Affiliation(s)
- Walid Baaziz
- Institut de Physique et Chimie des Matériaux de Strasbourg (IPCMS), University of Strasbourg, 23 rue du Loess BP 43, CEDEX 2, 67034 Strasbourg, France; (W.B.); (O.E.)
| | - Corneliu Ghica
- National Institute of Materials Physics, Atomistilor 405A, 077125 Magurele, Romania
- Correspondence: (C.G.); (J.W.)
| | - Jefferson Cypriano
- Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Avenida Carlos Chagas Filho, 373, CCS, UFRJ, Rio de Janeiro 21941-902, Brazil; (J.C.); (F.A.)
| | - Fernanda Abreu
- Instituto de Microbiologia Paulo de Góes, Universidade Federal do Rio de Janeiro, Avenida Carlos Chagas Filho, 373, CCS, UFRJ, Rio de Janeiro 21941-902, Brazil; (J.C.); (F.A.)
| | - Karine Anselme
- Institut de Science des Matériaux de Mulhouse, University of Haute Alsace, 68057 Mulhouse, France;
| | - Ovidiu Ersen
- Institut de Physique et Chimie des Matériaux de Strasbourg (IPCMS), University of Strasbourg, 23 rue du Loess BP 43, CEDEX 2, 67034 Strasbourg, France; (W.B.); (O.E.)
| | - Marcos Farina
- Instituto de Ciências Biomédicas, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-902, Brazil;
| | - Jacques Werckmann
- Instituto de Ciências Biomédicas, Universidade Federal do Rio de Janeiro, Rio de Janeiro 21941-902, Brazil;
- Centro Brasiliero de Pesquisas Fisicas, LABNANO, Rio de Janeiro 22290-180, Brazil
- Correspondence: (C.G.); (J.W.)
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6
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Thomas GH. Microbial Musings – April 2021. Microbiology (Reading) 2021; 167. [PMID: 33945459 PMCID: PMC8289222 DOI: 10.1099/mic.0.001061] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
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7
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Hoffmann TD, Reeksting BJ, Gebhard S. Bacteria-induced mineral precipitation: a mechanistic review. MICROBIOLOGY (READING, ENGLAND) 2021; 167:001049. [PMID: 33881981 PMCID: PMC8289221 DOI: 10.1099/mic.0.001049] [Citation(s) in RCA: 21] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 01/21/2021] [Accepted: 03/15/2021] [Indexed: 11/18/2022]
Abstract
Micro-organisms contribute to Earth's mineral deposits through a process known as bacteria-induced mineral precipitation (BIMP). It is a complex phenomenon that can occur as a result of a variety of physiological activities that influence the supersaturation state and nucleation catalysis of mineral precipitation in the environment. There is a good understanding of BIMP induced by bacterial metabolism through the control of metal redox states and enzyme-mediated reactions such as ureolysis. However, other forms of BIMP often cannot be attributed to a single pathway but rather appear to be a passive result of bacterial activity, where minerals form as a result of metabolic by-products and surface interactions within the surrounding environment. BIMP from such processes has formed the basis of many new innovative biotechnologies, such as soil consolidation, heavy metal remediation, restoration of historic buildings and even self-healing concrete. However, these applications to date have primarily incorporated BIMP-capable bacteria sampled from the environment, while detailed investigations of the underpinning mechanisms have been lagging behind. This review covers our current mechanistic understanding of bacterial activities that indirectly influence BIMP and highlights the complexity and connectivity between the different cellular and metabolic processes involved. Ultimately, detailed insights will facilitate the rational design of application-specific BIMP technologies and deepen our understanding of how bacteria are shaping our world.
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Affiliation(s)
- Timothy D. Hoffmann
- Department of Biology and Biochemistry, Milner Centre for Evolution, University of Bath, Claverton Down, Bath, BA2 7AY, UK
| | - Bianca J. Reeksting
- Department of Biology and Biochemistry, Milner Centre for Evolution, University of Bath, Claverton Down, Bath, BA2 7AY, UK
| | - Susanne Gebhard
- Department of Biology and Biochemistry, Milner Centre for Evolution, University of Bath, Claverton Down, Bath, BA2 7AY, UK
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8
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Leonel AG, Mansur AAP, Mansur HS. Advanced Functional Nanostructures based on Magnetic Iron Oxide Nanomaterials for Water Remediation: A Review. WATER RESEARCH 2021; 190:116693. [PMID: 33302040 DOI: 10.1016/j.watres.2020.116693] [Citation(s) in RCA: 41] [Impact Index Per Article: 13.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2020] [Revised: 11/10/2020] [Accepted: 11/27/2020] [Indexed: 05/24/2023]
Abstract
The fast growth of industrialization combined with the increasing population has led to an unparalleled demand for providing water in a safe, reliable, and cost-effective way, which has become one of the biggest challenges of the twenty-first century faced by global society. The application of nanotechnology in water treatment and pollution cleanup is a promising alternative in order to overcome the current limitations. In particular, the application of magnetic iron oxide nanoparticles (MIONs) for environmental remediation has currently received remarkable attention due to its unique combination of physicochemical and magnetic properties. Given the broadening use of these functional engineered nanomaterials, there is a growing concern about the adverse effects upon exposure of products and by-products to the environment. This makes vitally relevant the development of green chemistry in the synthesis processes combined with a trustworthy risk assessment of the nanotoxicity of MIONs as the scientific knowledge of the potential hazard of nanomaterials remains limited. This work provides comprehensive coverage of the recent progress on designing and developing iron oxide-based nanomaterials through a green synthesis strategy, including the use of benign solvents and ligands. Despite the limitations of nanotoxicity and environmental risks of iron oxide-based nanoparticles for the ecosystem, this critical review presents a contribution to the emerging knowledge concerning the theoretical and experimental studies on the toxicity of MIONs. Potential improvement of applications of advanced iron oxide-based hybrid nanostructures in water treatment and pollution control is also addressed in this review.
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Affiliation(s)
- Alice G Leonel
- Center of Nanoscience, Nanotechnology and Innovation - CeNano(2)I, Department of Metallurgical and Materials Engineering, Federal University of Minas Gerais - UFMG, Av. Antônio Carlos, 6627 - Belo Horizonte/MG, Brazil.
| | - Alexandra A P Mansur
- Center of Nanoscience, Nanotechnology and Innovation - CeNano(2)I, Department of Metallurgical and Materials Engineering, Federal University of Minas Gerais - UFMG, Av. Antônio Carlos, 6627 - Belo Horizonte/MG, Brazil.
| | - Herman S Mansur
- Center of Nanoscience, Nanotechnology and Innovation - CeNano(2)I, Department of Metallurgical and Materials Engineering, Federal University of Minas Gerais - UFMG, Av. Antônio Carlos, 6627 - Belo Horizonte/MG, Brazil.
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9
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Tanaka M, Saito S, Kita R, Jang J, Choi Y, Choi J, Okochi M. Array-Based Screening of Silver Nanoparticle Mineralization Peptides. Int J Mol Sci 2020; 21:E2377. [PMID: 32235567 PMCID: PMC7178033 DOI: 10.3390/ijms21072377] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/21/2020] [Revised: 03/26/2020] [Accepted: 03/26/2020] [Indexed: 12/24/2022] Open
Abstract
The use of biomolecules in nanomaterial synthesis has received increasing attention, because they can function as a medium to produce inorganic materials in ambient conditions. Short peptides are putative ligands that interact with metallic surfaces, as they have the potential to control the synthesis of nanoscale materials. Silver nanoparticle (AgNP) mineralization using peptides has been investigated; however, further comprehensive analysis must be carried out, because the design of peptide mediated-AgNP properties is still highly challenging. Herein, we employed an array comprising 200 spot synthesis-based peptides, which were previously isolated as gold nanoparticle (AuNP)-binding and/or mineralization peptides, and the AgNP mineralization activity of each peptide was broadly evaluated. Among 10 peptides showing the highest AgNP-synthesis activity (TOP10), nine showed the presence of EE and E[X]E (E: glutamic acid, and X: any amino acid), whereas none of these motifs were found in the WORST25 (25 peptides showing the lowest AgNP synthesis activity) peptides. The size and morphology of the particles synthesized by TOP3 peptides were dependent on their sequences. These results suggested not only that array-based techniques are effective for the peptide screening of AgNP mineralization, but also that AgNP mineralization regulated by peptides has the potential for the synthesis of AgNPs, with controlled morphology in environmentally friendly conditions.
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Affiliation(s)
- Masayoshi Tanaka
- Department of Chemical Science and Engineering, Tokyo Institute of Technology, 2-12-1, O-okayama, Meguro-ku, Tokyo 152-8552, Japan; (M.T.); (S.S.)
| | - Shogo Saito
- Department of Chemical Science and Engineering, Tokyo Institute of Technology, 2-12-1, O-okayama, Meguro-ku, Tokyo 152-8552, Japan; (M.T.); (S.S.)
| | - Reo Kita
- School of Science; Tokyo Institute of Technology, 2-12-1, O-okayama, Meguro-ku, Tokyo 152-8552, Japan;
| | - Jaehee Jang
- School of Integrative Engineering, Chung-Ang University, Seoul 06974, Korea; (J.J.); (Y.C.); (J.C.)
| | - Yonghyun Choi
- School of Integrative Engineering, Chung-Ang University, Seoul 06974, Korea; (J.J.); (Y.C.); (J.C.)
| | - Jonghoon Choi
- School of Integrative Engineering, Chung-Ang University, Seoul 06974, Korea; (J.J.); (Y.C.); (J.C.)
| | - Mina Okochi
- Department of Chemical Science and Engineering, Tokyo Institute of Technology, 2-12-1, O-okayama, Meguro-ku, Tokyo 152-8552, Japan; (M.T.); (S.S.)
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10
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Investigating the ferric ion binding site of magnetite biomineralisation protein Mms6. PLoS One 2020; 15:e0228708. [PMID: 32097412 PMCID: PMC7041794 DOI: 10.1371/journal.pone.0228708] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/11/2019] [Accepted: 01/21/2020] [Indexed: 11/19/2022] Open
Abstract
The biomineralization protein Mms6 has been shown to be a major player in the formation of magnetic nanoparticles both within the magnetosomes of magnetotactic bacteria and as an additive in synthetic magnetite precipitation assays. Previous studies have highlighted the ferric iron binding capability of the protein and this activity is thought to be crucial to its mineralizing properties. To understand how this protein binds ferric ions we have prepared a series of single amino acid substitutions within the C-terminal binding region of Mms6 and have used a ferric binding assay to probe the binding site at the level of individual residues which has pinpointed the key residues of E44, E50 and R55 involved in Mms6 ferric binding. No aspartic residues bound ferric ions. A nanoplasmonic sensing experiment was used to investigate the unstable EER44, 50,55AAA triple mutant in comparison to native Mms6. This suggests a difference in interaction with iron ions between the two and potential changes to the surface precipitation of iron oxide when the pH is increased. All-atom simulations suggest that disruptive mutations do not fundamentally alter the conformational preferences of the ferric binding region. Instead, disruption of these residues appears to impede a sequence-specific motif in the C-terminus critical to ferric ion binding.
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11
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Abstract
Many species of bacteria can manufacture materials on a finer scale than those that are synthetically made. These products are often produced within intracellular compartments that bear many hallmarks of eukaryotic organelles. One unique and elegant group of organisms is at the forefront of studies into the mechanisms of organelle formation and biomineralization. Magnetotactic bacteria (MTB) produce organelles called magnetosomes that contain nanocrystals of magnetic material, and understanding the molecular mechanisms behind magnetosome formation and biomineralization is a rich area of study. In this Review, we focus on the genetics behind the formation of magnetosomes and biomineralization. We cover the history of genetic discoveries in MTB and key insights that have been found in recent years and provide a perspective on the future of genetic studies in MTB.
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Affiliation(s)
- Hayley C. McCausland
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California, United States of America
| | - Arash Komeili
- Department of Molecular and Cell Biology, University of California, Berkeley, Berkeley, California, United States of America
- Department of Plant and Microbial Biology, University of California, Berkeley, Berkeley, California, United States of America
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12
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Bell AM, Robinson JT. The rotating magnetocaloric effect as a potential mechanism for natural magnetic senses. PLoS One 2019; 14:e0222401. [PMID: 31574085 PMCID: PMC6773214 DOI: 10.1371/journal.pone.0222401] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2019] [Accepted: 08/28/2019] [Indexed: 12/01/2022] Open
Abstract
Many animals are able to sense the earth’s magnetic field, including varieties of arthropods and members of all major vertebrate groups. While the existence of this magnetic sense is widely accepted, the mechanism of action remains unknown. Building from recent work on synthetic magnetoreceptors, we propose a new model for natural magnetosensation based on the rotating magnetocaloric effect (RME), which predicts that heat generated by magnetic nanoparticles may allow animals to detect features of the earth’s magnetic field. Using this model, we identify the conditions for the RME to produce physiological signals in response to the earth’s magnetic field and suggest experiments to distinguish between candidate mechanisms of magnetoreception.
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Affiliation(s)
- A. Martin Bell
- Applied Physics Program, Rice University, Houston, Texas, United States of America
- Department of Electrical and Computer Engineering, Rice University, Houston, Texas, United States of America
| | - Jacob T. Robinson
- Department of Electrical and Computer Engineering, Rice University, Houston, Texas, United States of America
- Department of Bioengineering, Rice University, Houston, Texas, United States of America
- Department of Neuroscience, Baylor College of Medicine, Houston, Texas, United States of America
- * E-mail:
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13
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Tanaka M, Takahashi Y, Roach L, Critchley K, Evans SD, Okochi M. Rational screening of biomineralisation peptides for colour-selected one-pot gold nanoparticle syntheses. NANOSCALE ADVANCES 2019; 1:71-75. [PMID: 36132451 PMCID: PMC9473233 DOI: 10.1039/c8na00075a] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/10/2018] [Accepted: 07/16/2018] [Indexed: 06/11/2023]
Abstract
Biomineralisation peptides that facilitate the one-pot synthesis of gold nanoparticles (AuNPs) with selected optical properties, were screened using a coherent peptide-spotted array consisting of a AuNP binding peptide library. As the biomineralised AuNPs were captured on each peptide spot, analysis of the images provided information on their collective optical properties.
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Affiliation(s)
- M Tanaka
- Department of Chemical Science and Engineering, Tokyo Institute of Technology 2-12-1, O-okayama, Meguro-ku Tokyo 152-8552 Japan +81-3-5734-2116 +81-3-5734-2116
| | - Y Takahashi
- Department of Chemical Science and Engineering, Tokyo Institute of Technology 2-12-1, O-okayama, Meguro-ku Tokyo 152-8552 Japan +81-3-5734-2116 +81-3-5734-2116
| | - L Roach
- School of Physics and Astronomy, University of Leeds Leeds LS2 9JT UK
| | - K Critchley
- School of Physics and Astronomy, University of Leeds Leeds LS2 9JT UK
| | - S D Evans
- School of Physics and Astronomy, University of Leeds Leeds LS2 9JT UK
| | - M Okochi
- Department of Chemical Science and Engineering, Tokyo Institute of Technology 2-12-1, O-okayama, Meguro-ku Tokyo 152-8552 Japan +81-3-5734-2116 +81-3-5734-2116
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14
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Kuo D, Kajiyama S, Kato T. Development of biomineralization-inspired hybrids based on β-chitin and zinc hydroxide carbonate and their conversion into zinc oxide thin films. CrystEngComm 2019. [DOI: 10.1039/c9ce00141g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Hybrid thin films based on an environmentally friendly biopolymer, β-chitin and zinc hydroxide carbonate were developed through a biomineralization-inspired approach.
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Affiliation(s)
- David Kuo
- Department of Chemistry and Biotechnology
- School of Engineering
- The University of Tokyo
- Tokyo 113-8656
- Japan
| | - Satoshi Kajiyama
- Department of Chemistry and Biotechnology
- School of Engineering
- The University of Tokyo
- Tokyo 113-8656
- Japan
| | - Takashi Kato
- Department of Chemistry and Biotechnology
- School of Engineering
- The University of Tokyo
- Tokyo 113-8656
- Japan
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15
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Kerans FFA, Lungaro L, Azfer A, Salter DM. The Potential of Intrinsically Magnetic Mesenchymal Stem Cells for Tissue Engineering. Int J Mol Sci 2018; 19:E3159. [PMID: 30322202 PMCID: PMC6214112 DOI: 10.3390/ijms19103159] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/13/2018] [Revised: 10/04/2018] [Accepted: 10/09/2018] [Indexed: 12/16/2022] Open
Abstract
The magnetization of mesenchymal stem cells (MSC) has the potential to aid tissue engineering approaches by allowing tracking, targeting, and local retention of cells at the site of tissue damage. Commonly used methods for magnetizing cells include optimizing uptake and retention of superparamagnetic iron oxide nanoparticles (SPIONs). These appear to have minimal detrimental effects on the use of MSC function as assessed by in vitro assays. The cellular content of magnetic nanoparticles (MNPs) will, however, decrease with cell proliferation and the longer-term effects on MSC function are not entirely clear. An alternative approach to magnetizing MSCs involves genetic modification by transfection with one or more genes derived from Magnetospirillum magneticum AMB-1, a magnetotactic bacterium that synthesizes single-magnetic domain crystals which are incorporated into magnetosomes. MSCs with either or mms6 and mmsF genes are followed by bio-assimilated synthesis of intracytoplasmic magnetic nanoparticles which can be imaged by magnetic resonance (MR) and which have no deleterious effects on MSC proliferation, migration, or differentiation. The stable transfection of magnetosome-associated genes in MSCs promotes assimilation of magnetic nanoparticle synthesis into mammalian cells with the potential to allow MR-based cell tracking and, through external or internal magnetic targeting approaches, enhanced site-specific retention of cells for tissue engineering.
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Affiliation(s)
- Fransiscus F A Kerans
- Centre for Genomics and Experimental Medicine, MRC IGMM, University of Edinburgh, Edinburgh EH4 2XU, UK.
| | - Lisa Lungaro
- Centre for Genomics and Experimental Medicine, MRC IGMM, University of Edinburgh, Edinburgh EH4 2XU, UK.
| | - Asim Azfer
- Centre for Genomics and Experimental Medicine, MRC IGMM, University of Edinburgh, Edinburgh EH4 2XU, UK.
| | - Donald M Salter
- Centre for Genomics and Experimental Medicine, MRC IGMM, University of Edinburgh, Edinburgh EH4 2XU, UK.
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16
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Tanaka M, Suwatthanarak T, Arakaki A, Johnson BRG, Evans SD, Okochi M, Staniland SS, Matsunaga T. Enhanced Tubulation of Liposome Containing Cardiolipin by MamY Protein from Magnetotactic Bacteria. Biotechnol J 2018; 13:e1800087. [DOI: 10.1002/biot.201800087] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2018] [Revised: 07/18/2018] [Indexed: 01/22/2023]
Affiliation(s)
- Masayoshi Tanaka
- Department of Chemical Science and EngineeringTokyo Institute of Technology2‐12‐1, O‐okayama, Meguro‐kuTokyo 152‐8552Japan
| | - Thanawat Suwatthanarak
- Department of Chemical Science and EngineeringTokyo Institute of Technology2‐12‐1, O‐okayama, Meguro‐kuTokyo 152‐8552Japan
| | - Atsushi Arakaki
- Division of Biotechnology and Life ScienceInstitute of EngineeringTokyo University of Agriculture and Technology2‐24‐16 Naka‐cho, KoganeiTokyo 184‐8588Japan
| | | | - Stephen D. Evans
- School of Physics and AstronomyUniversity of LeedsLeeds LS2 9JTUK
| | - Mina Okochi
- Department of Chemical Science and EngineeringTokyo Institute of Technology2‐12‐1, O‐okayama, Meguro‐kuTokyo 152‐8552Japan
| | | | - Tadashi Matsunaga
- Division of Biotechnology and Life ScienceInstitute of EngineeringTokyo University of Agriculture and Technology2‐24‐16 Naka‐cho, KoganeiTokyo 184‐8588Japan
- Faculty of Science and EngineeringWaseda University3‐4‐1, Okubo, Shinjuku‐kuTokyo 169‐8555Japan
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17
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Werckmann J, Cypriano J, Lefèvre CT, Dembelé K, Ersen O, Bazylinski DA, Lins U, Farina M. Localized iron accumulation precedes nucleation and growth of magnetite crystals in magnetotactic bacteria. Sci Rep 2017; 7:8291. [PMID: 28811607 PMCID: PMC5557804 DOI: 10.1038/s41598-017-08994-9] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/06/2017] [Accepted: 07/14/2017] [Indexed: 12/16/2022] Open
Abstract
Many magnetotactic bacteria (MTB) biomineralize magnetite crystals that nucleate and grow inside intracellular membranous vesicles that originate from invaginations of the cytoplasmic membrane. The crystals together with their surrounding membranes are referred to magnetosomes. Magnetosome magnetite crystals nucleate and grow using iron transported inside the vesicle by specific proteins. Here we address the question: can iron transported inside MTB for the production of magnetite crystals be spatially mapped using electron microscopy? Cultured and uncultured MTB from brackish and freshwater lagoons were studied using analytical transmission electron microscopy in an attempt to answer this question. Scanning transmission electron microscopy was used at sub-nanometric resolution to determine the distribution of elements by implementing high sensitivity energy dispersive X-ray (EDS) mapping and electron energy loss spectroscopy (EELS). EDS mapping showed that magnetosomes are enmeshed in a magnetosomal matrix in which iron accumulates close to the magnetosome forming a continuous layer visually appearing as a corona. EELS, obtained at high spatial resolution, confirmed that iron was present close to and inside the lipid bilayer magnetosome membrane. This study provides important clues to magnetite formation in MTB through the discovery of a mechanism where iron ions accumulate prior to magnetite biomineralization.
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Affiliation(s)
- Jacques Werckmann
- Instituto de Ciências Biomédicas, Universidade Federal do Rio de Janeiro, 21941-902, Rio de Janeiro, Brazil.
| | - Jefferson Cypriano
- Instituto de Microbiologia, Universidade Federal do Rio de Janeiro, 21941-902, Rio de Janeiro, Brazil
| | - Christopher T Lefèvre
- CNRS/CEA/Aix-Marseille Université, UMR7265 Institut de biosciences et biotechnologies, Laboratoire de Bioénergétique Cellulaire, 13108, Saint Paul lez Durance, France
| | - Kassiogé Dembelé
- Institut de physique et chimie des matériaux de Strasbourg (IPCMS) UMR 7504 CNRS 23 rue du Lœss, BP 43 67034, Strasbourg Cedex 2, France
| | - Ovidiu Ersen
- Institut de physique et chimie des matériaux de Strasbourg (IPCMS) UMR 7504 CNRS 23 rue du Lœss, BP 43 67034, Strasbourg Cedex 2, France
| | - Dennis A Bazylinski
- School of Life Sciences, University of Nevada at Las Vegas, Las Vegas, Nevada, 89154-4004, USA
| | - Ulysses Lins
- Instituto de Microbiologia, Universidade Federal do Rio de Janeiro, 21941-902, Rio de Janeiro, Brazil
| | - Marcos Farina
- Instituto de Ciências Biomédicas, Universidade Federal do Rio de Janeiro, 21941-902, Rio de Janeiro, Brazil
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18
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Lin W, Pan Y, Bazylinski DA. Diversity and ecology of and biomineralization by magnetotactic bacteria. ENVIRONMENTAL MICROBIOLOGY REPORTS 2017; 9:345-356. [PMID: 28557300 DOI: 10.1111/1758-2229.12550] [Citation(s) in RCA: 45] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/14/2017] [Revised: 05/20/2017] [Accepted: 05/21/2017] [Indexed: 06/07/2023]
Abstract
Magnetotactic bacteria (MTB) biomineralize intracellular, membrane-bounded crystals of magnetite (Fe3 O4 ) and/or greigite (Fe3 S4 ) called magnetosomes. MTB play important roles in the geochemical cycling of iron, sulfur, nitrogen and carbon. Significantly, they also represent an intriguing model system not just for the study of microbial biomineralization but also for magnetoreception, prokaryotic organelle formation and microbial biogeography. Here we review current knowledge on the ecology of and biomineralization by MTB, with an emphasis on more recent reports of unexpected ecological and phylogenetic findings regarding MTB. In this study, we conducted a search of public metagenomic databases and identified six novel magnetosome gene cluster-containing genomic fragments affiliated with the Deltaproteobacteria and Gammaproteobacteria classes of the Proteobacteria phylum, the Nitrospirae phylum and the Planctomycetes phylum from the deep subseafloor, marine oxygen minimum zone, groundwater biofilm and estuary sediment, thereby extending our knowledge on the diversity and distribution of MTB as well deriving important information as to their ecophysiology. We point out that the increasing availability of sequence data will facilitate researchers to systematically explore the ecology and biomineralization of MTB even further.
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Affiliation(s)
- Wei Lin
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing, 100029, China
- France-China Bio-Mineralization and Nano-Structures Laboratory, Chinese Academy of Sciences, Beijing, 100029, China
| | - Yongxin Pan
- Key Laboratory of Earth and Planetary Physics, Institute of Geology and Geophysics, Chinese Academy of Sciences, Beijing, 100029, China
- France-China Bio-Mineralization and Nano-Structures Laboratory, Chinese Academy of Sciences, Beijing, 100029, China
- College of Earth Sciences, University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Dennis A Bazylinski
- School of Life Sciences, University of Nevada at Las Vegas, Las Vegas, NV, 89154-4004, USA
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19
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Barber-Zucker S, Zarivach R. A Look into the Biochemistry of Magnetosome Biosynthesis in Magnetotactic Bacteria. ACS Chem Biol 2017; 12:13-22. [PMID: 27930882 DOI: 10.1021/acschembio.6b01000] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/01/2023]
Abstract
Magnetosomes are protein-rich membrane organelles that encapsulate magnetite or greigite and whose chain alignment enables magnetotactic bacteria (MTB) to sense the geomagnetic field. As these bacteria synthesize uniform magnetic particles, their biomineralization mechanism is of great interest among researchers from different fields, from material engineering to medicine. Both magnetosome formation and magnetic particle synthesis are highly controlled processes that can be divided into several crucial steps: membrane invagination from the inner-cell membrane, protein sorting, the magnetosomes' arrangement into chains, iron transport, chemical environment regulation of the magnetosome lumen, magnetic particle nucleation, and finally crystal growth, size, and morphology control. This complex system involves an ensemble of unique proteins that participate in different stages during magnetosome formation, some of which were extensively studied in recent years. Here, we present the current knowledge on magnetosome biosynthesis with a focus on the different proteins and the main biochemical pathways along this process.
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Affiliation(s)
- Shiran Barber-Zucker
- Department of Life
Sciences,
the National Institute for Biotechnology in the Negev and Ilse Katz
Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, Beer Sheva, 8410501, Israel
| | - Raz Zarivach
- Department of Life
Sciences,
the National Institute for Biotechnology in the Negev and Ilse Katz
Institute for Nanoscale Science and Technology, Ben-Gurion University of the Negev, Beer Sheva, 8410501, Israel
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