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McClymont H, Lambert SB, Barr I, Vardoulakis S, Bambrick H, Hu W. Internet-based Surveillance Systems and Infectious Diseases Prediction: An Updated Review of the Last 10 Years and Lessons from the COVID-19 Pandemic. J Epidemiol Glob Health 2024; 14:645-657. [PMID: 39141074 PMCID: PMC11442909 DOI: 10.1007/s44197-024-00272-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2024] [Accepted: 06/26/2024] [Indexed: 08/15/2024] Open
Abstract
The last decade has seen major advances and growth in internet-based surveillance for infectious diseases through advanced computational capacity, growing adoption of smart devices, increased availability of Artificial Intelligence (AI), alongside environmental pressures including climate and land use change contributing to increased threat and spread of pandemics and emerging infectious diseases. With the increasing burden of infectious diseases and the COVID-19 pandemic, the need for developing novel technologies and integrating internet-based data approaches to improving infectious disease surveillance is greater than ever. In this systematic review, we searched the scientific literature for research on internet-based or digital surveillance for influenza, dengue fever and COVID-19 from 2013 to 2023. We have provided an overview of recent internet-based surveillance research for emerging infectious diseases (EID), describing changes in the digital landscape, with recommendations for future research directed at public health policymakers, healthcare providers, and government health departments to enhance traditional surveillance for detecting, monitoring, reporting, and responding to influenza, dengue, and COVID-19.
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Affiliation(s)
- Hannah McClymont
- Ecosystem Change and Population Health (ECAPH) Research Group, School of Public Health and Social Work, Queensland University of Technology (QUT), Brisbane, Australia
| | - Stephen B Lambert
- Communicable Diseases Branch, Queensland Health, Brisbane, Australia
- National Centre for Immunisation Research and Surveillance, Sydney Children's Hospitals Network, Westmead, Australia
| | - Ian Barr
- WHO Collaborating Centre for Reference and Research on Influenza, The Peter Doherty Institute for Infection and Immunity, Melbourne, Australia
- Department of Microbiology and Immunology, University of Melbourne, Melbourne, Australia
| | - Sotiris Vardoulakis
- Health Research Institute, University of Canberra, Canberra, Australia
- Healthy Environments and Lives (HEAL) National Research Network, Canberra, Australia
| | - Hilary Bambrick
- National Centre for Epidemiology and Population Health, College of Health and Medicine, The Australian National University, Canberra, Australia
| | - Wenbiao Hu
- Ecosystem Change and Population Health (ECAPH) Research Group, School of Public Health and Social Work, Queensland University of Technology (QUT), Brisbane, Australia.
- Healthy Environments and Lives (HEAL) National Research Network, Canberra, Australia.
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Wang J, Ramirez JC, Hu W. Comments on "Impact of meteorological parameters and air pollutants on airborne concentration of Betula pollen and Bet v 1 allergen" by Vašková1, Zuzana et al., https://doi.org/10.1007/s11356-023-29061-z. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2024; 31:24675-24676. [PMID: 38294650 DOI: 10.1007/s11356-024-32112-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/01/2023] [Accepted: 01/17/2024] [Indexed: 02/01/2024]
Affiliation(s)
- Jialu Wang
- Ecosystem Change and Population Health (ECAPH) Research Group, School of Public Health and Social Work, Queensland University of Technology, Brisbane, QLD, Australia
| | - Javier Cortes Ramirez
- Centre for Data Science, Queensland University of Technology, Brisbane, QLD, Australia
- School of Public Health and Social Work, Queensland University of Technology, Brisbane, QLD, Australia
| | - Wenbiao Hu
- Ecosystem Change and Population Health (ECAPH) Research Group, School of Public Health and Social Work, Queensland University of Technology, Brisbane, QLD, Australia.
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Luo T, Zhou J, Yang J, Xie Y, Wei Y, Mai H, Lu D, Yang Y, Cui P, Ye L, Liang H, Huang J. Early Warning and Prediction of Scarlet Fever in China Using the Baidu Search Index and Autoregressive Integrated Moving Average With Explanatory Variable (ARIMAX) Model: Time Series Analysis. J Med Internet Res 2023; 25:e49400. [PMID: 37902815 PMCID: PMC10644180 DOI: 10.2196/49400] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/27/2023] [Revised: 08/23/2023] [Accepted: 09/26/2023] [Indexed: 10/31/2023] Open
Abstract
BACKGROUND Internet-derived data and the autoregressive integrated moving average (ARIMA) and ARIMA with explanatory variable (ARIMAX) models are extensively used for infectious disease surveillance. However, the effectiveness of the Baidu search index (BSI) in predicting the incidence of scarlet fever remains uncertain. OBJECTIVE Our objective was to investigate whether a low-cost BSI monitoring system could potentially function as a valuable complement to traditional scarlet fever surveillance in China. METHODS ARIMA and ARIMAX models were developed to predict the incidence of scarlet fever in China using data from the National Health Commission of the People's Republic of China between January 2011 and August 2022. The procedures included establishing a keyword database, keyword selection and filtering through Spearman rank correlation and cross-correlation analyses, construction of the scarlet fever comprehensive search index (CSI), modeling with the training sets, predicting with the testing sets, and comparing the prediction performances. RESULTS The average monthly incidence of scarlet fever was 4462.17 (SD 3011.75) cases, and annual incidence exhibited an upward trend until 2019. The keyword database contained 52 keywords, but only 6 highly relevant ones were selected for modeling. A high Spearman rank correlation was observed between the scarlet fever reported cases and the scarlet fever CSI (rs=0.881). We developed the ARIMA(4,0,0)(0,1,2)(12) model, and the ARIMA(4,0,0)(0,1,2)(12) + CSI (Lag=0) and ARIMAX(1,0,2)(2,0,0)(12) models were combined with the BSI. The 3 models had a good fit and passed the residuals Ljung-Box test. The ARIMA(4,0,0)(0,1,2)(12), ARIMA(4,0,0)(0,1,2)(12) + CSI (Lag=0), and ARIMAX(1,0,2)(2,0,0)(12) models demonstrated favorable predictive capabilities, with mean absolute errors of 1692.16 (95% CI 584.88-2799.44), 1067.89 (95% CI 402.02-1733.76), and 639.75 (95% CI 188.12-1091.38), respectively; root mean squared errors of 2036.92 (95% CI 929.64-3144.20), 1224.92 (95% CI 559.04-1890.79), and 830.80 (95% CI 379.17-1282.43), respectively; and mean absolute percentage errors of 4.33% (95% CI 0.54%-8.13%), 3.36% (95% CI -0.24% to 6.96%), and 2.16% (95% CI -0.69% to 5.00%), respectively. The ARIMAX models outperformed the ARIMA models and had better prediction performances with smaller values. CONCLUSIONS This study demonstrated that the BSI can be used for the early warning and prediction of scarlet fever, serving as a valuable supplement to traditional surveillance systems.
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Affiliation(s)
- Tingyan Luo
- School of Public Health, Guangxi Medical University, Nanning, China
- Guangxi Key Laboratory of AIDS Prevention and Treatment, Guangxi Medical University, Nanning, China
| | - Jie Zhou
- School of Public Health, Guangxi Medical University, Nanning, China
- Guangxi Key Laboratory of AIDS Prevention and Treatment, Guangxi Medical University, Nanning, China
| | - Jing Yang
- School of Public Health, Guangxi Medical University, Nanning, China
- Guangxi Key Laboratory of AIDS Prevention and Treatment, Guangxi Medical University, Nanning, China
| | - Yulan Xie
- School of Public Health, Guangxi Medical University, Nanning, China
- Guangxi Key Laboratory of AIDS Prevention and Treatment, Guangxi Medical University, Nanning, China
| | - Yiru Wei
- School of Public Health, Guangxi Medical University, Nanning, China
- Guangxi Key Laboratory of AIDS Prevention and Treatment, Guangxi Medical University, Nanning, China
| | - Huanzhuo Mai
- School of Public Health, Guangxi Medical University, Nanning, China
- Guangxi Key Laboratory of AIDS Prevention and Treatment, Guangxi Medical University, Nanning, China
| | - Dongjia Lu
- School of Public Health, Guangxi Medical University, Nanning, China
- Guangxi Key Laboratory of AIDS Prevention and Treatment, Guangxi Medical University, Nanning, China
| | - Yuecong Yang
- School of Public Health, Guangxi Medical University, Nanning, China
- Guangxi Key Laboratory of AIDS Prevention and Treatment, Guangxi Medical University, Nanning, China
| | - Ping Cui
- Life Science Institute, Guangxi Medical University, Nanning, China
| | - Li Ye
- School of Public Health, Guangxi Medical University, Nanning, China
- Guangxi Key Laboratory of AIDS Prevention and Treatment, Guangxi Medical University, Nanning, China
| | - Hao Liang
- Guangxi Key Laboratory of AIDS Prevention and Treatment, Guangxi Medical University, Nanning, China
- Life Science Institute, Guangxi Medical University, Nanning, China
| | - Jiegang Huang
- School of Public Health, Guangxi Medical University, Nanning, China
- Guangxi Key Laboratory of AIDS Prevention and Treatment, Guangxi Medical University, Nanning, China
- Guangxi Colleges and Universities Key Laboratory of Prevention and Control of Highly Prevalent Disease, Guangxi Medical University, Nanning, China
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Wang Z, He J, Jin B, Zhang L, Han C, Wang M, Wang H, An S, Zhao M, Zhen Q, Tiejun S, Zhang X. Using Baidu Index Data to Improve Chickenpox Surveillance in Yunnan, China: Infodemiology Study. J Med Internet Res 2023; 25:e44186. [PMID: 37191983 DOI: 10.2196/44186] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/10/2022] [Revised: 03/21/2023] [Accepted: 05/04/2023] [Indexed: 05/17/2023] Open
Abstract
BACKGROUND Chickenpox is an old but easily neglected infectious disease. Although chickenpox is preventable by vaccines, vaccine breakthroughs often occur, and the chickenpox epidemic is on the rise. Chickenpox is not included in the list of regulated communicable diseases that must be reported and controlled by public and health departments; therefore, it is crucial to rapidly identify and report varicella outbreaks during the early stages. The Baidu index (BDI) can supplement the traditional surveillance system for infectious diseases, such as brucellosis and dengue, in China. The number of reported chickenpox cases and internet search data also showed a similar trend. BDI can be a useful tool to display the outbreak of infectious diseases. OBJECTIVE This study aimed to develop an efficient disease surveillance method that uses BDI to assist in traditional surveillance. METHODS Chickenpox incidence data (weekly from January 2017 to June 2021) reported by the Yunnan Province Center for Disease Control and Prevention were obtained to evaluate the relationship between the incidence of chickenpox and BDI. We applied a support vector machine regression (SVR) model and a multiple regression prediction model with BDI to predict the incidence of chickenpox. In addition, we used the SVR model to predict the number of chickenpox cases from June 2021 to the first week of April 2022. RESULTS The analysis showed that there was a close correlation between the weekly number of newly diagnosed cases and the BDI. In the search terms we collected, the highest Spearman correlation coefficient was 0.747. Most BDI search terms, such as "chickenpox," "chickenpox treatment," "treatment of chickenpox," "chickenpox symptoms," and "chickenpox virus," trend consistently. Some BDI search terms, such as "chickenpox pictures," "symptoms of chickenpox," "chickenpox vaccine," and "is chickenpox vaccine necessary," appeared earlier than the trend of "chickenpox virus." The 2 models were compared, the SVR model performed better in all the applied measurements: fitting effect, R2=0.9108, root mean square error (RMSE)=96.2995, and mean absolute error (MAE)=73.3988; and prediction effect, R2=0.548, RMSE=189.1807, and MAE=147.5412. In addition, we applied the SVR model to predict the number of reported cases weekly in Yunnan from June 2021 to April 2022 using the same period of the BDI. The results showed that the fluctuation of the time series from July 2021 to April 2022 was similar to that of the last year and a half with no change in the level of prevention and control. CONCLUSIONS These findings indicated that the BDI in Yunnan Province can predict the incidence of chickenpox in the same period. Thus, the BDI is a useful tool for monitoring the chickenpox epidemic and for complementing traditional monitoring systems.
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Affiliation(s)
- Zhaohan Wang
- Department of Epidemiology and Biostatistics, School of Public Health, Jilin University, Changchun, China
| | - Jun He
- Yunnan Center for Disease Control and Prevention, Yunnan, China
| | - Bolin Jin
- Department of Epidemiology and Biostatistics, School of Public Health, Jilin University, Changchun, China
| | - Lizhi Zhang
- Department of Epidemiology and Biostatistics, School of Public Health, Jilin University, Changchun, China
| | - Chenyu Han
- Department of Epidemiology and Biostatistics, School of Public Health, Jilin University, Changchun, China
| | - Meiqi Wang
- Department of Epidemiology and Biostatistics, School of Public Health, Jilin University, Changchun, China
| | - Hao Wang
- Department of Epidemiology and Biostatistics, School of Public Health, Jilin University, Changchun, China
| | - Shuqi An
- Department of Epidemiology and Biostatistics, School of Public Health, Jilin University, Changchun, China
| | - Meifang Zhao
- Department of Epidemiology and Biostatistics, School of Public Health, Jilin University, Changchun, China
| | - Qing Zhen
- Department of Epidemiology and Biostatistics, School of Public Health, Jilin University, Changchun, China
| | - Shui Tiejun
- Yunnan Center for Disease Control and Prevention, Yunnan, China
| | - Xinyao Zhang
- Department of Social Medicine and Health Management, School of Public Health, Jilin University, Changchun, China
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Lu Y, Wang Y, Liao Y, Wang J, Shan M, Jiang H. Public Concern about Haze and Ozone in the Era of Their Coordinated Control in China. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2023; 20:911. [PMID: 36673669 PMCID: PMC9859249 DOI: 10.3390/ijerph20020911] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Revised: 12/29/2022] [Accepted: 12/31/2022] [Indexed: 06/17/2023]
Abstract
In China, due to the implementation of the Action Plan for Prevention and Control of Air Pollution (APPCAP), the concentrations of PM2.5 (fine particulate matter) and severe haze in most cities have decreased significantly. However, at present, haze pollution in China has not been completely mitigated, and the problem of O3 (ozone) has become prominent. Therefore, the prevention and control of haze and O3 pollution have become important and noticeable issues in the field of atmospheric management. We used the Baidu search indices of "haze" and "ozone" to reflect public concerns about air quality and uncover different correlations between level of concern and level of pollution, and then we identified regions in China that require public attention. The results showed that (1) over the last decade, the search index of haze had a rapid trend of variation in line with changes in haze pollution, but that of O3 had a relatively slowly increasing trend; (2) the lag days between the peaks of public concern and the peaks of air pollution became increasingly shorter according to daily data analysis; and (3) 96 polluted cities did not receive sufficient public attention. Although periods of heavily haze-polluted weather, which affects visibility, have generated much public concern, periods of slight pollution have not received enough public attention. Public health protection and environmental participation regarding these periods of slight pollution in China deserve appropriate levels of attention.
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Affiliation(s)
- Yaling Lu
- School of Environmental Science and Engineering, Tianjin University, Tianjin 300072, China
- The Center of Enterprise Green Governance, Chinese Academy for Environmental Planning, Beijing 100012, China
| | - Yuan Wang
- School of Environmental Science and Engineering, Tianjin University, Tianjin 300072, China
| | - Yujie Liao
- Hebei Key Laboratory of Power Plant Flue Gas Multi-Pollutants Control, Department of Environmental Science and Engineering, North China Electric Power University, Baoding 071003, China
| | - Jiantong Wang
- The Center of Enterprise Green Governance, Chinese Academy for Environmental Planning, Beijing 100012, China
| | - Mei Shan
- School of Environmental Science and Engineering, Tianjin University, Tianjin 300072, China
| | - Hongqiang Jiang
- The Center of Enterprise Green Governance, Chinese Academy for Environmental Planning, Beijing 100012, China
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Chang Q, Shu Y, Hu W, Li X, Qing P. Impact of the COVID-19 Pandemic on Meal Gathering in China. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2022; 19:16698. [PMID: 36554579 PMCID: PMC9779450 DOI: 10.3390/ijerph192416698] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/20/2022] [Revised: 12/01/2022] [Accepted: 12/08/2022] [Indexed: 06/17/2023]
Abstract
During the COVID-19 pandemic, the Chinese government adopted a series of preventative measures to control the spread of the virus. This paper studies the impact of the COVID-19 pandemic and its associated prevention methods on meal sharing in China. Meal gathering during multiple periods before and after the outbreak of COVID-19 is captured through two waves of online survey across China between March and June 2020, collecting a total of 1847 observations. We employ the difference-in-difference (DID) method to identify the causal effects of COVID-19 severity on meal sharing. The results show that relative to the same period in 2019, the frequency of meal gathering decreased sharply after the initial outbreak of the coronavirus in 2020 in both epicenters and non-epicenters. Furthermore, the impact of COVID-19 differed across different types of meal sharing. Our findings have implications for consumers, food service operators, as well as policymakers to understand the social and community impact of the pandemic and to adjust their coping strategies.
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Affiliation(s)
- Qing Chang
- College of Economics and Management, Huazhong Agricultural University, Wuhan 430070, China
- Research Center of Food Economics, Nutrition and Health, Huazhong Agricultural University, Wuhan 430070, China
| | - Yiheng Shu
- School of Business, Jiangnan University, Wuxi 214122, China
| | - Wuyang Hu
- Department of Agricultural, Environmental, and Development Economics, The Ohio State University, Columbus, OH 43210, USA
| | - Xiaolei Li
- College of Economics and Management, Huazhong Agricultural University, Wuhan 430070, China
- Research Center of Food Economics, Nutrition and Health, Huazhong Agricultural University, Wuhan 430070, China
| | - Ping Qing
- College of Economics and Management, Huazhong Agricultural University, Wuhan 430070, China
- Research Center of Food Economics, Nutrition and Health, Huazhong Agricultural University, Wuhan 430070, China
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Wang Z, Zhang W, Lu N, Lv R, Wang J, Zhu C, Ai L, Mao Y, Tan W, Qi Y. A potential tool for predicting epidemic trends and outbreaks of scrub typhus based on Internet search big data analysis in Yunnan Province, China. Front Public Health 2022; 10:1004462. [PMID: 36530696 PMCID: PMC9751444 DOI: 10.3389/fpubh.2022.1004462] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/01/2022] [Accepted: 11/11/2022] [Indexed: 12/04/2022] Open
Abstract
Introduction Scrub typhus, caused by Orientia tsutsugamushi, is a neglected tropical disease. The southern part of China is considered an important epidemic and conserved area of scrub typhus. Although a surveillance system has been established, the surveillance of scrub typhus is typically delayed or incomplete and cannot predict trends in morbidity. Internet search data intuitively expose the public's attention to certain diseases when used in the public health area, thus reflecting the prevalence of the diseases. Methods In this study, based on the Internet search big data and historical scrub typhus incidence data in Yunnan Province of China, the autoregressive integrated moving average (ARIMA) model and ARIMA with external variables (ARIMAX) model were constructed and compared to predict the scrub typhus incidence. Results The results showed that the ARIMAX model produced a better outcome than the ARIMA model evaluated by various indexes and comparisons with the actual data. Conclusions The study demonstrates that Internet search big data can enhance the traditional surveillance system in monitoring and predicting the prevalence of scrub typhus and provides a potential tool for monitoring epidemic trends of scrub typhus and early warning of its outbreaks.
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Affiliation(s)
- Zixu Wang
- Huadong Research Institute for Medicine and Biotechniques, Nanjing, China,Bengbu Medical College, Bengbu, China
| | - Wenyi Zhang
- Chinese PLA Center for Disease Control and Prevention, Beijing, China
| | - Nianhong Lu
- Huadong Research Institute for Medicine and Biotechniques, Nanjing, China,Nanjing Bioengineering (Gene) Technology Center for Medicines, Nanjing, China
| | - Ruichen Lv
- Huadong Research Institute for Medicine and Biotechniques, Nanjing, China,Nanjing Bioengineering (Gene) Technology Center for Medicines, Nanjing, China
| | - Junhu Wang
- Huadong Research Institute for Medicine and Biotechniques, Nanjing, China,Nanjing Bioengineering (Gene) Technology Center for Medicines, Nanjing, China
| | - Changqiang Zhu
- Huadong Research Institute for Medicine and Biotechniques, Nanjing, China,Nanjing Bioengineering (Gene) Technology Center for Medicines, Nanjing, China
| | - Lele Ai
- Huadong Research Institute for Medicine and Biotechniques, Nanjing, China,Nanjing Bioengineering (Gene) Technology Center for Medicines, Nanjing, China
| | - Yingqing Mao
- Huadong Research Institute for Medicine and Biotechniques, Nanjing, China,Nanjing Bioengineering (Gene) Technology Center for Medicines, Nanjing, China
| | - Weilong Tan
- Huadong Research Institute for Medicine and Biotechniques, Nanjing, China,Nanjing Bioengineering (Gene) Technology Center for Medicines, Nanjing, China,*Correspondence: Weilong Tan
| | - Yong Qi
- Huadong Research Institute for Medicine and Biotechniques, Nanjing, China,Nanjing Bioengineering (Gene) Technology Center for Medicines, Nanjing, China,Yong Qi
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Zheng L, Cai J, Wang F, Ruan C, Xu M, Miao M. How Health-Related Misinformation Spreads Across the Internet: Evidence for the "Typhoon Eye" Effect. CYBERPSYCHOLOGY, BEHAVIOR AND SOCIAL NETWORKING 2022; 25:641-648. [PMID: 36099179 DOI: 10.1089/cyber.2022.0047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/15/2023]
Abstract
Online health-related misinformation has become a major problem in society and in-depth research is needed to understand its propagation patterns and underlying mechanisms. This study proposes a psychological typhoon eye effect to understand how health-related misinformation spreads during the pandemic using two national studies. In Study 1, we collected online search data from the United States and China to explore the relationship between the physical distance from the epicenter and the spread of health-related misinformation. Two common pieces of health-related misinformation were examined: "Microwaves kill coronavirus" in the United States and "Taking a hot bath can prevent against COVID-19" in China. Our results indicated a "typhoon eye effect" in the spread of two actual pieces of health-related misinformation using online data from the United States and China. In Study 2, we fabricated a piece of health-related misinformation, "Wash Clothes with Salt Water to Block Infection," and measured the spread behavior and perceived credibility of the misinformation. Again, we observed a typhoon eye effect on the spread behavior as well as the perceived credibility of health-related misinformation among people with limited education. In addition, based on the stimulus-organism-response theory, perceived credibility could serve as a mediator in the relationship between physical distance from the epicenter and the spread of health-related misinformation. Our results highlight the importance of psychological approaches to understanding the propagation patterns of health-related misinformation. The present findings provide a new perspective for development of prevention and control strategies to reduce the spread of health-related misinformation during pandemics.
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Affiliation(s)
- Lei Zheng
- School of Economics and Management, Fuzhou University, Fuzhou, China
| | - Jincheng Cai
- School of Economics and Management, Fuzhou University, Fuzhou, China
| | - Fang Wang
- College of Pharmaceutical Sciences, Zhejiang University of Technology, Hangzhou, China
| | - Chenhan Ruan
- School of Management, Fujian Agricultural and Forestry University, Fuzhou, China
| | - Mingxing Xu
- School of Management, Fujian University of Technology, Fuzhou, China
| | - Miao Miao
- Department of Medical Psychology, School of Health Humanities, Peking University, Beijing, China
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Data-driven methods for dengue prediction and surveillance using real-world and Big Data: A systematic review. PLoS Negl Trop Dis 2022; 16:e0010056. [PMID: 34995281 PMCID: PMC8740963 DOI: 10.1371/journal.pntd.0010056] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2021] [Accepted: 12/06/2021] [Indexed: 12/23/2022] Open
Abstract
Background Traditionally, dengue surveillance is based on case reporting to a central health agency. However, the delay between a case and its notification can limit the system responsiveness. Machine learning methods have been developed to reduce the reporting delays and to predict outbreaks, based on non-traditional and non-clinical data sources. The aim of this systematic review was to identify studies that used real-world data, Big Data and/or machine learning methods to monitor and predict dengue-related outcomes. Methodology/Principal findings We performed a search in PubMed, Scopus, Web of Science and grey literature between January 1, 2000 and August 31, 2020. The review (ID: CRD42020172472) focused on data-driven studies. Reviews, randomized control trials and descriptive studies were not included. Among the 119 studies included, 67% were published between 2016 and 2020, and 39% used at least one novel data stream. The aim of the included studies was to predict a dengue-related outcome (55%), assess the validity of data sources for dengue surveillance (23%), or both (22%). Most studies (60%) used a machine learning approach. Studies on dengue prediction compared different prediction models, or identified significant predictors among several covariates in a model. The most significant predictors were rainfall (43%), temperature (41%), and humidity (25%). The two models with the highest performances were Neural Networks and Decision Trees (52%), followed by Support Vector Machine (17%). We cannot rule out a selection bias in our study because of our two main limitations: we did not include preprints and could not obtain the opinion of other international experts. Conclusions/Significance Combining real-world data and Big Data with machine learning methods is a promising approach to improve dengue prediction and monitoring. Future studies should focus on how to better integrate all available data sources and methods to improve the response and dengue management by stakeholders. Dengue is one of the most important arbovirus infections in the world and its public health, societal and economic burden is increasing. Although the majority of dengue cases are asymptomatic or mild, severe disease forms can lead to death. For this reason, early diagnosis and monitoring of dengue are crucial to decrease mortality. However, most endemic regions still rely on traditional monitoring methods, despite the growing availability of novel data sources and data-driven methods based on real-world data, Big Data, and machine learning algorithms. In this systematic review, we identified and analyzed studies that used these novel approaches for dengue monitoring and/or prediction. We found that novel data streams, such as Internet search engines and social media platforms, and machine learning methods can be successfully used to improve dengue management, but are still vastly ignored in real life. These approaches should be combined with traditional methods to help stakeholders better prepare for each outbreak and improve early responsiveness.
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Forecasting Teleconsultation Demand Using an Ensemble CNN Attention-Based BILSTM Model with Additional Variables. Healthcare (Basel) 2021; 9:healthcare9080992. [PMID: 34442130 PMCID: PMC8391747 DOI: 10.3390/healthcare9080992] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/24/2021] [Revised: 07/21/2021] [Accepted: 08/02/2021] [Indexed: 11/16/2022] Open
Abstract
To enhance the forecasting accuracy of daily teleconsultation demand, this study proposes an ensemble hybrid deep learning model. The proposed ensemble CNN attention-based BILSTM model (ECA-BILSTM) combines shallow convolutional neural networks (CNNs), attention mechanisms, and bidirectional long short-term memory (BILSTM). Moreover, additional variables are selected according to the characteristics of teleconsultation demand and added to the inputs of forecasting models. To verify the superiority of ECA-BILSTM and the effectiveness of additional variables, two actual teleconsultation datasets collected in the National Telemedicine Center of China (NTCC) are used as the experimental data. Results showed that ECA-BILSTMs can significantly outperform corresponding benchmark models. And two key additional variables were identified for teleconsultation demand prediction improvement. Overall, the proposed ECA-BILSTM model with effective additional variables is a feasible promising approach in teleconsultation demand forecasting.
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Fisman R, Lin H, Sun C, Wang Y, Zhao D. What motivates non-democratic leadership: Evidence from COVID-19 reopenings in China. JOURNAL OF PUBLIC ECONOMICS 2021; 196:104389. [PMID: 36536637 PMCID: PMC9753912 DOI: 10.1016/j.jpubeco.2021.104389] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Revised: 02/17/2021] [Accepted: 02/17/2021] [Indexed: 05/29/2023]
Abstract
We examine Chinese cities' COVID-19 reopening plans as a window into governments' economic and social priorities. We measure reopenings based on official government news announcements, and show that these are predicted by citizen discontent, as captured by Baidu searches for terms such as "unemployment" and "protest" in the prior week. The effects are particularly strong early in the epidemic, indicating a priority on initiating economic recovery as early as possible. These results indicate that even a non-democratic government may respond to citizen concerns, possibly to minimize dissent.
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Affiliation(s)
- Raymond Fisman
- Economics Department, Boston University, Room 304A, Boston, MA 02215, United States
| | - Hui Lin
- Finance Department, School of Business, Nanjing University, Anzhong Building, 210093 Nanjing, Jiangsu Province, China
| | - Cong Sun
- School of Urban and Regional Science, Shanghai University of Finance and Economics, Shanghai 200433, China
| | - Yongxiang Wang
- School of Management and Economics, The Chinese University of Hong Kong, Shenzhen 518172, China
- Shanghai Advanced Institute of Finance, Shanghai Jiaotong University, Shanghai 200030, China
| | - Daxuan Zhao
- Department of Finance, School of Business, Renmin University of China, Beijing 100872, China
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12
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Liu X, Liu K, Yue Y, Wu H, Yang S, Guo Y, Ren D, Zhao N, Yang J, Liu Q. Determination of Factors Affecting Dengue Occurrence in Representative Areas of China: A Principal Component Regression Analysis. Front Public Health 2021; 8:603872. [PMID: 33537277 PMCID: PMC7848178 DOI: 10.3389/fpubh.2020.603872] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/08/2020] [Accepted: 12/10/2020] [Indexed: 11/13/2022] Open
Abstract
Background: Determination of the key factors affecting dengue occurrence is of significant importance for the successful response to its outbreak. Yunnan and Guangdong Provinces in China are hotspots of dengue outbreak during recent years. However, few studies focused on the drive of multi-dimensional factors on dengue occurrence failing to consider the possible multicollinearity of the studied factors, which may bias the results. Methods: In this study, multiple linear regression analysis was utilized to explore the effect of multicollinearity among dengue occurrences and related natural and social factors. A principal component regression (PCR) analysis was utilized to determine the key dengue-driven factors in Guangzhou city of Guangdong Province and Xishuangbanna prefecture of Yunnan Province, respectively. Results: The effect of multicollinearity existed in both Guangzhou city and Xishuangbanna prefecture, respectively. PCR model revealed that the top three contributing factors to dengue occurrence in Guangzhou were Breteau Index (BI) (positive correlation), the number of imported dengue cases lagged by 1 month (positive correlation), and monthly average of maximum temperature lagged by 1 month (negative correlation). In contrast, the top three factors contributing to dengue occurrence in Xishuangbanna included monthly average of minimum temperature lagged by 1 month (positive correlation), monthly average of maximum temperature (positive correlation), monthly average of relative humidity (positive correlation), respectively. Conclusion: Meteorological factors presented stronger impacts on dengue occurrence in Xishuangbanna, Yunnan, while BI and the number of imported cases lagged by 1 month played important roles on dengue transmission in Guangzhou, Guangdong. Our findings could help to facilitate the formulation of tailored dengue response mechanism in representative areas of China in the future.
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Affiliation(s)
- Xiaobo Liu
- State Key Laboratory of Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, WHO Collaborating Centre for Vector Surveillance and Management, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Keke Liu
- Provincial Hospital Affiliated to Shandong First Medical University, Jinan, China
| | - Yujuan Yue
- State Key Laboratory of Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, WHO Collaborating Centre for Vector Surveillance and Management, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Haixia Wu
- State Key Laboratory of Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, WHO Collaborating Centre for Vector Surveillance and Management, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Shu Yang
- The Collaboration Unit for Field Epidemiology of State Key Laboratory of Infectious Disease Prevention and Control, Nanchang Center for Disease Control and Prevention, Nanchang, China
| | - Yuhong Guo
- State Key Laboratory of Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, WHO Collaborating Centre for Vector Surveillance and Management, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Dongsheng Ren
- State Key Laboratory of Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, WHO Collaborating Centre for Vector Surveillance and Management, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Ning Zhao
- State Key Laboratory of Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, WHO Collaborating Centre for Vector Surveillance and Management, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Jun Yang
- Institute for Environmental and Climate Research, Jinan University, Guangzhou, China
| | - Qiyong Liu
- State Key Laboratory of Infectious Disease Prevention and Control, Collaborative Innovation Center for Diagnosis and Treatment of Infectious Diseases, WHO Collaborating Centre for Vector Surveillance and Management, National Institute for Communicable Disease Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
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13
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Dong W, Tao J, Xia X, Ye L, Xu H, Jiang P, Liu Y. Public Emotions and Rumors Spread During the COVID-19 Epidemic in China: Web-Based Correlation Study. J Med Internet Res 2020; 22:e21933. [PMID: 33112757 PMCID: PMC7690969 DOI: 10.2196/21933] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2020] [Revised: 08/12/2020] [Accepted: 10/26/2020] [Indexed: 11/13/2022] Open
Abstract
BACKGROUND Various online rumors have led to inappropriate behaviors among the public in response to the COVID-19 epidemic in China. These rumors adversely affect people's physical and mental health. Therefore, a better understanding of the relationship between public emotions and rumors during the epidemic may help generate useful strategies for guiding public emotions and dispelling rumors. OBJECTIVE This study aimed to explore whether public emotions are related to the dissemination of online rumors in the context of COVID-19. METHODS We used the web-crawling tool Scrapy to gather data published by People's Daily on Sina Weibo, a popular social media platform in China, after January 8, 2020. Netizens' comments under each Weibo post were collected. Nearly 1 million comments thus collected were divided into 5 categories: happiness, sadness, anger, fear, and neutral, based on the underlying emotional information identified and extracted from the comments by using a manual identification process. Data on rumors spread online were collected through Tencent's Jiaozhen platform. Time-lagged cross-correlation analyses were performed to examine the relationship between public emotions and rumors. RESULTS Our results indicated that the angrier the public felt, the more rumors there would likely be (r=0.48, P<.001). Similar results were observed for the relationship between fear and rumors (r=0.51, P<.001) and between sadness and rumors (r=0.47, P<.001). Furthermore, we found a positive correlation between happiness and rumors, with happiness lagging the emergence of rumors by 1 day (r=0.56, P<.001). In addition, our data showed a significant positive correlation between fear and fearful rumors (r=0.34, P=.02). CONCLUSIONS Our findings confirm that public emotions are related to the rumors spread online in the context of COVID-19 in China. Moreover, these findings provide several suggestions, such as the use of web-based monitoring methods, for relevant authorities and policy makers to guide public emotions and behavior during this public health emergency.
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Affiliation(s)
- Wei Dong
- School of Education, Tianjin University, Tianjin, China
| | - Jinhu Tao
- School of Education, Tianjin University, Tianjin, China
| | - Xiaolin Xia
- School of Education, Tianjin University, Tianjin, China
| | - Lin Ye
- School of Media and Communication, Shanghai Jiaotong University, Shanghai, China
| | - Hanli Xu
- College of Life Sciences and Bioengineering, School of Science, Beijing Jiaotong University, Beijing, China
| | - Peiye Jiang
- Office of International Cooperation and Exchanges, Nanjing University, Nanjing, China
| | - Yangyang Liu
- School of Education, Tianjin University, Tianjin, China
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14
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Chen H, Paris C, Reeson A. The impact of social ties and SARS memory on the public awareness of 2019 novel coronavirus (SARS-CoV-2) outbreak. Sci Rep 2020; 10:18241. [PMID: 33106506 PMCID: PMC7589561 DOI: 10.1038/s41598-020-75318-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/15/2020] [Accepted: 09/28/2020] [Indexed: 11/14/2022] Open
Abstract
This study examines publicly available online search data in China to investigate the spread of public awareness of the 2019 novel coronavirus (SARS-CoV-2) outbreak. We found that cities that had previously suffered from SARS (in 2003–04) and have greater migration ties to Wuhan had earlier, stronger and more durable public awareness of the outbreak. Our data indicate that 48 such cities developed awareness up to 19 days earlier than 255 comparable cities, giving them an opportunity to better prepare. This study suggests that it is important to consider memory of prior catastrophic events as they will influence the public response to emerging threats.
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Affiliation(s)
- Haohui Chen
- Data61, Commonwealth Scientific and Industrial Research Organization, Canberra, Australia. .,Monash University, Melbourne, Australia.
| | - Cecile Paris
- Data61, Commonwealth Scientific and Industrial Research Organization, Canberra, Australia
| | - Andrew Reeson
- Data61, Commonwealth Scientific and Industrial Research Organization, Canberra, Australia
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15
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Li K, Liang Y, Li J, Liu M, Feng Y, Shao Y. Internet search data could Be used as novel indicator for assessing COVID-19 epidemic. Infect Dis Model 2020; 5:848-854. [PMID: 33134612 PMCID: PMC7585146 DOI: 10.1016/j.idm.2020.10.001] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2020] [Revised: 09/06/2020] [Accepted: 10/01/2020] [Indexed: 01/08/2023] Open
Abstract
The pandemic of the coronavirus disease (COVID-19) poses a huge challenge all countries, since no one is well prepared for it. To be better prepared for future pandemics, we evaluated association between the internet search data with reported COVID-19 cases to verify whether it could become an early indicator for emerging epidemic. After the keyword filtering and Index composition, we found that there were close correlations between Composite Index and suspected cases for COVID-19 (r = 0.921, P < 0.05). The Search Index was applied for the Autoregressive Integrated Moving Average with Exogenous Variables (ARIMAX) model to quantify the relationship. Compared with the model based on surveillance data only, the ARIMAX model had smaller Akaike Information Criterion (AIC = 403.51) and the most accurate predictive values. Overall, the Internet search data could serve as a convenient indicator for predicting the epidemic and to monitor its trends.
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Affiliation(s)
- Kang Li
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, China
- State Key Laboratory for Infectious Disease Prevention and Control, National Center for AIDS/STD Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Yanling Liang
- State Key Laboratory for Infectious Disease Prevention and Control, National Center for AIDS/STD Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
- School of Public Health, Guangxi Medical University, Nanning, Guangxi, China
| | - Jianjun Li
- Guangxi Center for Disease Prevention and Control, Nanning, Guangxi, China
| | - Meiliang Liu
- School of Public Health, Guangxi Medical University, Nanning, Guangxi, China
| | - Yi Feng
- State Key Laboratory for Infectious Disease Prevention and Control, National Center for AIDS/STD Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Yiming Shao
- Key Laboratory of Molecular Microbiology and Technology, Ministry of Education, College of Life Sciences, Nankai University, Tianjin, China
- State Key Laboratory for Infectious Disease Prevention and Control, National Center for AIDS/STD Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
- Guangxi Center for Disease Prevention and Control, Nanning, Guangxi, China
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16
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Adnan M, Gao X, Bai X, Newbern E, Sherwood J, Jones N, Baker M, Wood T, Gao W. Potential Early Identification of a Large Campylobacter Outbreak Using Alternative Surveillance Data Sources: Autoregressive Modelling and Spatiotemporal Clustering. JMIR Public Health Surveill 2020; 6:e18281. [PMID: 32940617 PMCID: PMC7530686 DOI: 10.2196/18281] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/16/2020] [Revised: 05/10/2020] [Accepted: 06/13/2020] [Indexed: 11/13/2022] Open
Abstract
BACKGROUND Over one-third of the population of Havelock North, New Zealand, approximately 5500 people, were estimated to have been affected by campylobacteriosis in a large waterborne outbreak. Cases reported through the notifiable disease surveillance system (notified case reports) are inevitably delayed by several days, resulting in slowed outbreak recognition and delayed control measures. Early outbreak detection and magnitude prediction are critical to outbreak control. It is therefore important to consider alternative surveillance data sources and evaluate their potential for recognizing outbreaks at the earliest possible time. OBJECTIVE The first objective of this study is to compare and validate the selection of alternative data sources (general practice consultations, consumer helpline, Google Trends, Twitter microblogs, and school absenteeism) for their temporal predictive strength for Campylobacter cases during the Havelock North outbreak. The second objective is to examine spatiotemporal clustering of data from alternative sources to assess the size and geographic extent of the outbreak and to support efforts to attribute its source. METHODS We combined measures derived from alternative data sources during the 2016 Havelock North campylobacteriosis outbreak with notified case report counts to predict suspected daily Campylobacter case counts up to 5 days before cases reported in the disease surveillance system. Spatiotemporal clustering of the data was analyzed using Local Moran's I statistics to investigate the extent of the outbreak in both space and time within the affected area. RESULTS Models that combined consumer helpline data with autoregressive notified case counts had the best out-of-sample predictive accuracy for 1 and 2 days ahead of notified case reports. Models using Google Trends and Twitter typically performed the best 3 and 4 days before case notifications. Spatiotemporal clusters showed spikes in school absenteeism and consumer helpline inquiries that preceded the notified cases in the city primarily affected by the outbreak. CONCLUSIONS Alternative data sources can provide earlier indications of a large gastroenteritis outbreak compared with conventional case notifications. Spatiotemporal analysis can assist in refining the geographical focus of an outbreak and can potentially support public health source attribution efforts. Further work is required to assess the location of such surveillance data sources and methods in routine public health practice.
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Affiliation(s)
- Mehnaz Adnan
- Institute of Environmental Science and Research, Porirua, New Zealand
| | - Xiaoying Gao
- Victoria University of Wellington, Wellington, New Zealand
| | - Xiaohan Bai
- Victoria University of Wellington, Wellington, New Zealand
| | - Elizabeth Newbern
- Institute of Environmental Science and Research, Porirua, New Zealand
| | - Jill Sherwood
- Institute of Environmental Science and Research, Porirua, New Zealand
| | - Nicholas Jones
- Hawke's Bay District Health Board, Hawke's Bay, New Zealand
| | | | - Tim Wood
- Institute of Environmental Science and Research, Porirua, New Zealand
| | - Wei Gao
- Victoria University of Wellington, Wellington, New Zealand
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17
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Chew AMK, Ong R, Lei HH, Rajendram M, K V G, Verma SK, Fung DSS, Leong JJY, Gunasekeran DV. Digital Health Solutions for Mental Health Disorders During COVID-19. Front Psychiatry 2020; 11:582007. [PMID: 33033487 PMCID: PMC7509592 DOI: 10.3389/fpsyt.2020.582007] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/10/2020] [Accepted: 08/14/2020] [Indexed: 12/17/2022] Open
Affiliation(s)
- Alton Ming Kai Chew
- National University of Singapore (NUS), Singapore, Singapore
- UCL Medical School, University College London (UCL), London, United Kingdom
| | - Ryan Ong
- National University of Singapore (NUS), Singapore, Singapore
- School of Medicine and Medicine Science, University College Dublin (UCD), Dublin, Ireland
| | - Hsien-Hsien Lei
- NUS Saw Swee Hock School of Public Health (NUS-SSHSPH), Singapore, Singapore
| | | | - Grisan K V
- Institute of Mental Health (IMH), Singapore, Singapore
| | - Swapna K. Verma
- Institute of Mental Health (IMH), Singapore, Singapore
- Duke-NUS Medical School, Singapore, Singapore
| | - Daniel Shuen Sheng Fung
- National University of Singapore (NUS), Singapore, Singapore
- Institute of Mental Health (IMH), Singapore, Singapore
- Duke-NUS Medical School, Singapore, Singapore
| | | | - Dinesh Visva Gunasekeran
- National University of Singapore (NUS), Singapore, Singapore
- Raffles Medical Group, Singapore, Singapore
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18
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Gónzalez-Bandala DA, Cuevas-Tello JC, Noyola DE, Comas-García A, García-Sepúlveda CA. Computational Forecasting Methodology for Acute Respiratory Infectious Disease Dynamics. INTERNATIONAL JOURNAL OF ENVIRONMENTAL RESEARCH AND PUBLIC HEALTH 2020; 17:ijerph17124540. [PMID: 32599746 PMCID: PMC7344846 DOI: 10.3390/ijerph17124540] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/01/2020] [Revised: 06/06/2020] [Accepted: 06/07/2020] [Indexed: 11/16/2022]
Abstract
The study of infectious disease behavior has been a scientific concern for many years as early identification of outbreaks provides great advantages including timely implementation of public health measures to limit the spread of an epidemic. We propose a methodology that merges the predictions of (i) a computational model with machine learning, (ii) a projection model, and (iii) a proposed smoothed endemic channel calculation. The predictions are made on weekly acute respiratory infection (ARI) data obtained from epidemiological reports in Mexico, along with the usage of key terms in the Google search engine. The results obtained with this methodology were compared with state-of-the-art techniques resulting in reduced root mean squared percentage error (RMPSE) and maximum absolute percent error (MAPE) metrics, achieving a MAPE of 21.7%. This methodology could be extended to detect and raise alerts on possible outbreaks on ARI as well as for other seasonal infectious diseases.
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Affiliation(s)
| | | | - Daniel E. Noyola
- Microbiology Department, Medicine Faculty, UASLP, San Luis Potosí 78290, Mexico; (D.E.N.); (A.C.-G.)
| | - Andreu Comas-García
- Microbiology Department, Medicine Faculty, UASLP, San Luis Potosí 78290, Mexico; (D.E.N.); (A.C.-G.)
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19
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Abstract
OBJECTIVES To assess the association of public interest in coronavirus infections with the actual number of infected cases for selected countries across the globe. METHODS We performed a Google TrendsTM search for "Coronavirus" and compared Relative Search Volumes (RSV) indices to the number of reported COVID-19 cases by the European Center for Disease Control (ECDC) using time-lag correlation analysis. RESULTS Worldwide public interest in Coronavirus reached its first peak end of January when numbers of newly infected patients started to increase exponentially in China. The worldwide Google TrendsTM index reached its peak on the 12th of March 2020 at a time when numbers of infected patients started to increase in Europe and COVID-19 was declared a pandemic. At this time the general interest in China but also the Republic of Korea has already been significantly decreased as compared to end of January. Correlations between RSV indices and number of new COVID-19 cases were observed across all investigated countries with highest correlations observed with a time lag of -11.5 days, i.e. highest interest in coronavirus observed 11.5 days before the peak of newly infected cases. This pattern was very consistent across European countries but also holds true for the US. In Brazil and Australia, highest correlations were observed with a time lag of -7 days. In Egypt the highest correlation is given with a time lag of 0, potentially indicating that in this country, numbers of newly infected patients will increase exponentially within the course of April. CONCLUSIONS Public interest indicated by RSV indices can help to monitor the progression of an outbreak such as the current COVID-19 pandemic. Public interest is on average highest 11.5 days before the peak of newly infected cases.
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20
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Akter R, Hu W, Gatton M, Bambrick H, Naish S, Tong S. Different responses of dengue to weather variability across climate zones in Queensland, Australia. ENVIRONMENTAL RESEARCH 2020; 184:109222. [PMID: 32114157 DOI: 10.1016/j.envres.2020.109222] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/14/2019] [Revised: 01/12/2020] [Accepted: 02/03/2020] [Indexed: 06/10/2023]
Abstract
BACKGROUND Dengue is a significant public health concern in northern Queensland, Australia. This study compared the epidemic features of dengue transmission among different climate zones and explored the threshold of weather variability for climate zones in relation to dengue in Queensland, Australia. METHODS Daily data on dengue cases and weather variables including minimum temperature, maximum temperature and rainfall for the period of January 1, 2010 to December 31, 2015 were obtained from Queensland Health and Australian Bureau of Meteorology, respectively. Climate zones shape file for Australia was also obtained from Australian Bureau of Meteorology. Kruskal-Wallis test was performed to check whether the distribution of dengue significantly differed between climate zones. Time series regression tree model was used to estimate the threshold effects of the monthly weather variables on dengue in different climate zones. RESULTS During the study period, the highest dengue incidence rate was found in the tropical climate zone (15.09/10,000) with the second highest in the grassland climate zone (3.49/10,000). Dengue responded differently to weather variability in different climate zones. In every climate zone, temperature was the primary predictor of dengue. However, the threshold values, type of temperature (e.g. maximum, minimum, or mean), and lag time for dengue varied between climate zones. Monthly mean temperature above 27°C at a lag of two months and monthly minimum temperature above 22°C at a lag of one month was found to be the most favourable weather condition for dengue in the tropical and subtropical climate zone, respectively. However, in the grassland climate zone, maximum temperature above 38°C at a lag of five months was found to be the ideal condition for dengue. Monthly rainfall with threshold value of 1.7 mm was found to be a significant contributor to dengue only in the tropical climate zone. CONCLUSIONS The temperature threshold for dengue was lower in both tropical and subtropical climate zones than in the grassland climate zone. The different temperature threshold between climate zones suggests that an early warning system would need to be developed based on local socio-ecological conditions of the climate zone to manage dengue control and intervention programs effectively.
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Affiliation(s)
- Rokeya Akter
- School of Public Health and Social Work, Institute of Health & Biomedical Innovation, Queensland University of Technology, Brisbane, Queensland, 4059, Australia.
| | - Wenbiao Hu
- School of Public Health and Social Work, Institute of Health & Biomedical Innovation, Queensland University of Technology, Brisbane, Queensland, 4059, Australia
| | - Michelle Gatton
- School of Public Health and Social Work, Institute of Health & Biomedical Innovation, Queensland University of Technology, Brisbane, Queensland, 4059, Australia
| | - Hilary Bambrick
- School of Public Health and Social Work, Institute of Health & Biomedical Innovation, Queensland University of Technology, Brisbane, Queensland, 4059, Australia
| | - Suchithra Naish
- School of Public Health and Social Work, Institute of Health & Biomedical Innovation, Queensland University of Technology, Brisbane, Queensland, 4059, Australia
| | - Shilu Tong
- School of Public Health and Social Work, Institute of Health & Biomedical Innovation, Queensland University of Technology, Brisbane, Queensland, 4059, Australia; Shanghai Children's Medical Centre, Shanghai Jiao Tong University, Shanghai, China; School of Public Health, Anhui Medical University, Hefei, China
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21
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Effenberger M, Kronbichler A, Shin JI, Mayer G, Tilg H, Perco P. Association of the COVID-19 pandemic with Internet Search Volumes: A Google Trends TM Analysis. Int J Infect Dis 2020; 95:192-197. [PMID: 32305520 PMCID: PMC7162745 DOI: 10.1016/j.ijid.2020.04.033] [Citation(s) in RCA: 139] [Impact Index Per Article: 27.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2020] [Revised: 04/09/2020] [Accepted: 04/10/2020] [Indexed: 02/06/2023] Open
Abstract
OBJECTIVES To assess the association of public interest in coronavirus infections with the actual number of infected cases for selected countries across the globe. METHODS We performed a Google TrendsTM search for "Coronavirus" and compared Relative Search Volumes (RSV) indices to the number of reported COVID-19 cases by the European Center for Disease Control (ECDC) using time-lag correlation analysis. RESULTS Worldwide public interest in Coronavirus reached its first peak end of January when numbers of newly infected patients started to increase exponentially in China. The worldwide Google TrendsTM index reached its peak on the 12th of March 2020 at a time when numbers of infected patients started to increase in Europe and COVID-19 was declared a pandemic. At this time the general interest in China but also the Republic of Korea has already been significantly decreased as compared to end of January. Correlations between RSV indices and number of new COVID-19 cases were observed across all investigated countries with highest correlations observed with a time lag of -11.5 days, i.e. highest interest in coronavirus observed 11.5 days before the peak of newly infected cases. This pattern was very consistent across European countries but also holds true for the US. In Brazil and Australia, highest correlations were observed with a time lag of -7 days. In Egypt the highest correlation is given with a time lag of 0, potentially indicating that in this country, numbers of newly infected patients will increase exponentially within the course of April. CONCLUSIONS Public interest indicated by RSV indices can help to monitor the progression of an outbreak such as the current COVID-19 pandemic. Public interest is on average highest 11.5 days before the peak of newly infected cases.
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Affiliation(s)
- Maria Effenberger
- Department of Internal Medicine I (Gastroenterology, Hepatology, Endocrinology and Metabolism), Medical University Innsbruck, Anichstrasse 35, 6020 Innsbruck, Austria
| | - Andreas Kronbichler
- Department of Internal Medicine IV (Nephrology and Hypertension), Medical University Innsbruck, Anichstrasse 35, 6020 Innsbruck, Austria
| | - Jae Il Shin
- Department of Pediatrics, Yonsei University College of Medicine, Seoul, Republic of Korea; Department of Pediatric Nephrology, Severance Children's Hospital, Seoul, Republic of Korea; Institute of Kidney Disease Research, Yonsei University College of Medicine, Seoul, Republic of Korea
| | - Gert Mayer
- Department of Internal Medicine IV (Nephrology and Hypertension), Medical University Innsbruck, Anichstrasse 35, 6020 Innsbruck, Austria
| | - Herbert Tilg
- Department of Internal Medicine I (Gastroenterology, Hepatology, Endocrinology and Metabolism), Medical University Innsbruck, Anichstrasse 35, 6020 Innsbruck, Austria
| | - Paul Perco
- Department of Internal Medicine IV (Nephrology and Hypertension), Medical University Innsbruck, Anichstrasse 35, 6020 Innsbruck, Austria.
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22
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Correlation Studies between Land Cover Change and Baidu Index: A Case Study of Hubei Province. ISPRS INTERNATIONAL JOURNAL OF GEO-INFORMATION 2020. [DOI: 10.3390/ijgi9040232] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/17/2022]
Abstract
Current land cover research focuses primarily on spatial changes in land cover and the driving forces behind these changes. Among such forces is the influence of policy, which has proven difficult to measure, and no quantitative research has been conducted. On the basis of previous studies, we took Hubei Province as the research area, using remote sensing (RS) images to extract land cover change data using a single land use dynamic degree and a comprehensive land use dynamic degree to study land cover changes from 2000 to 2015. Then, after introducing the Baidu Index (BDI), we explored its relationship with land cover change and built a tool to quantitatively measure the impact of changes in land cover. The research shows that the key search terms in the BDI are ‘cultivated land occupation tax’ and ‘construction land planning permit’, which are closely related to changes in cultivated land and construction land, respectively. Cultivated land and construction land in all regions of Hubei Province are affected by policy measures with the effects of policy decreasing the greater the distance from Wuhan, while Wuhan is the least affected region.
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23
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Search trends and prediction of human brucellosis using Baidu index data from 2011 to 2018 in China. Sci Rep 2020; 10:5896. [PMID: 32246053 PMCID: PMC7125199 DOI: 10.1038/s41598-020-62517-7] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2019] [Accepted: 03/16/2020] [Indexed: 11/13/2022] Open
Abstract
Reporting on brucellosis, a relatively rare infectious disease caused by Brucella, is often delayed or incomplete in traditional disease surveillance systems in China. Internet search engine data related to brucellosis can provide an economical and efficient complement to a conventional surveillance system because people tend to seek brucellosis-related health information from Baidu, the largest search engine in China. In this study, brucellosis incidence data reported by the CDC of China and Baidu index data were gathered to evaluate the relationship between them. We applied an autoregressive integrated moving average (ARIMA) model and an ARIMA model with Baidu search index data as the external variable (ARIMAX) to predict the incidence of brucellosis. The two models based on brucellosis incidence data were then compared, and the ARIMAX model performed better in all the measurements we applied. Our results illustrate that Baidu index data can enhance the traditional surveillance system to monitor and predict brucellosis epidemics in China.
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24
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Huang R, Luo G, Duan Q, Zhang L, Zhang Q, Tang W, Smith MK, Li J, Zou H. Using Baidu search index to monitor and predict newly diagnosed cases of HIV/AIDS, syphilis and gonorrhea in China: estimates from a vector autoregressive (VAR) model. BMJ Open 2020; 10:e036098. [PMID: 32209633 PMCID: PMC7202716 DOI: 10.1136/bmjopen-2019-036098] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
Abstract
OBJECTIVES Internet search engine data have been widely used to monitor and predict infectious diseases. Existing studies have found correlations between search data and HIV/AIDS epidemics. We aimed to extend the literature through exploring the feasibility of using search data to monitor and predict the number of newly diagnosed cases of HIV/AIDS, syphilis and gonorrhoea in China. METHODS This paper used vector autoregressive model to combine the number of newly diagnosed cases with Baidu search index to predict monthly newly diagnosed cases of HIV/AIDS, syphilis and gonorrhoea in China. The procedures included: (1) keywords selection and filtering; (2) construction of composite search index; (3) modelling with training data from January 2011 to October 2016 and calculating the prediction performance with validation data from November 2016 to October 2017. RESULTS The analysis showed that there was a close correlation between the monthly number of newly diagnosed cases and the composite search index (the Spearman's rank correlation coefficients were 0.777 for HIV/AIDS, 0.590 for syphilis and 0.633 for gonorrhoea, p<0.05 for all). The R2 were all more than 85% and the mean absolute percentage errors were less than 11%, showing the good fitting effect and prediction performance of vector autoregressive model in this field. CONCLUSIONS Our study indicated the potential feasibility of using Baidu search data to monitor and predict the number of newly diagnosed cases of HIV/AIDS, syphilis and gonorrhoea in China.
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Affiliation(s)
- Ruonan Huang
- School of Public Health, Sun Yat-Sen University, Guangzhou, China
| | - Ganfeng Luo
- School of Public Health (Shenzhen), Sun Yat-sen University, Shenzhen, China
| | - Qibin Duan
- The Kirby Institute, University of New South Wales, Sydney, New South Wales, Australia
- School of Mathematical Sciences, Queensland University of Technology, Brisbane, Queensland, Australia
| | - Lei Zhang
- China-Australia Joint Research Center for Infectious Diseass, School of Public Health, Xi'an Jiaotong University, Xi'an, China
- Melbourne Sexual Health Centre, Alfred Health, Melbourne, Victoria, Australia
- Central Clinical School, Faculty of Medicine Nursing and Health Sciences, Monash University, Melbourne, Victoria, Australia
- Department of Epidemiology and Biostatistics, College of Public Health, Zhengzhou University, Zhengzhou, China
| | - Qingpeng Zhang
- School of Data Science, City University of Hong Kong, Kowloon, Hong Kong
| | - Weiming Tang
- University of North Carolina Project China, Guangzhou, China
- Southern Medical University Dermatology Hospital, Guangzhou, China
| | - M Kumi Smith
- Division of Epidemiology and Community Health, School of Public Health, University of Minnesota Twin Cities, Minneapolis, Minnesota, USA
| | - Jinghua Li
- School of Public Health, Sun Yat-Sen University, Guangzhou, China
- Sun Yat-sen Global Health Institute, Sun Yat-Sen University, Guangzhou, China
| | - Huachun Zou
- School of Public Health (Shenzhen), Sun Yat-sen University, Shenzhen, China
- The Kirby Institute, University of New South Wales, Sydney, New South Wales, Australia
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25
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Xu ZW, Li ZJ, Hu WB. Global dynamic spatiotemporal pattern of seasonal influenza since 2009 influenza pandemic. Infect Dis Poverty 2020; 9:2. [PMID: 31900215 PMCID: PMC6942408 DOI: 10.1186/s40249-019-0618-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2019] [Accepted: 12/18/2019] [Indexed: 11/20/2022] Open
Abstract
Background Understanding the global spatiotemporal pattern of seasonal influenza is essential for influenza control and prevention. Available data on the updated global spatiotemporal pattern of seasonal influenza are scarce. This study aimed to assess the spatiotemporal pattern of seasonal influenza after the 2009 influenza pandemic. Methods Weekly influenza surveillance data in 86 countries from 2010 to 2017 were obtained from FluNet. First, the proportion of influenza A in total influenza viruses (PA) was calculated. Second, weekly numbers of influenza positive virus (A and B) were divided by the total number of samples processed to get weekly positive rates of influenza A (RWA) and influenza B (RWB). Third, the average positive rates of influenza A (RA) and influenza B (RB) for each country were calculated by averaging RWA, and RWB of 52 weeks. A Kruskal-Wallis test was conducted to examine if the year-to-year change in PA in all countries were significant, and a universal kriging method with linear semivariogram model was used to extrapolate RA and RB in all countries. Results PA ranged from 0.43 in Zambia to 0.98 in Belarus, and PA in countries with higher income was greater than those countries with lower income. The spatial patterns of high RB were the highest in sub-Saharan Africa, Asia-Pacific region and South America. RWA peaked in early weeks in temperate countries, and the peak of RWB occurred a bit later. There were some temperate countries with non-distinct influenza seasonality (e.g., Mauritius and Maldives) and some tropical/subtropical countries with distinct influenza seasonality (e.g., Chile and South Africa). Conclusions Influenza seasonality is not predictable in some temperate countries, and it is distinct in Chile, Argentina and South Africa, implying that the optimal timing for influenza vaccination needs to be chosen with caution in these unpredictable countries.
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Affiliation(s)
- Zhi-Wei Xu
- School of Public Health and Social Work & Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia.,Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia.,School of Public Health, Faculty of Medicine, University of Queensland, Brisbane, Australia
| | - Zhong-Jie Li
- Division of Infectious Disease, Key Laboratory of Surveillance and Early-warning on Infectious Disease, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Wen-Biao Hu
- School of Public Health and Social Work & Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia. .,Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia.
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26
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Zhang Y, Bambrick H, Mengersen K, Tong S, Feng L, Zhang L, Liu G, Xu A, Hu W. Using big data to predict pertussis infections in Jinan city, China: a time series analysis. INTERNATIONAL JOURNAL OF BIOMETEOROLOGY 2020; 64:95-104. [PMID: 31478106 DOI: 10.1007/s00484-019-01796-w] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/14/2019] [Revised: 07/06/2019] [Accepted: 08/27/2019] [Indexed: 05/14/2023]
Abstract
This study aims to use big data (climate data, internet query data and school calendar patterns (SCP)) to improve pertussis surveillance and prediction, and develop an early warning model for pertussis epidemics. We collected weekly pertussis notifications, SCP, climate and internet search query data (Baidu index (BI)) in Jinan, China between 2013 and 2017. Time series decomposition and temporal risk assessment were used for examining the epidemic features in pertussis infections. A seasonal autoregressive integrated moving average (SARIMA) model and regression tree model were developed to predict pertussis occurrence using identified predictors. Our study demonstrates clear seasonal patterns in pertussis epidemics, and pertussis activity was most significantly associated with BI at 2-week lag (rBI = 0.73, p < 0.05), temperature at 1-week lag (rtemp = 0.19, p < 0.05) and rainfall at 2-week lag (rrainfall = 0.27, p < 0.05). No obvious relationship between pertussis peaks and school attendance was found in the study. Pertussis cases were more likely to be temporally concentrated throughout the epidemics during the study period. SARIMA models with 2-week-lagged BI and 1-week-lagged temperature had better predictive performance (βsearch query = 0.06, p = 0.02; βtemp = 0.16, p = 0.03) with large correlation coefficients (r = 0.67, p < 0.01) and low root mean squared error (RMSE) value (r = 3.59). The regression tree model identified threshold values of potential predictors (search query, climate and SCP) for pertussis epidemics. Our results showed that internet query in conjunction with social and climatic data can predict pertussis epidemics, which is a foundation of using such data to develop early warning systems.
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Affiliation(s)
- Yuzhou Zhang
- School of Public Health and Social Work; Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Queensland, Australia
| | - Hilary Bambrick
- School of Public Health and Social Work; Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Queensland, Australia
| | - Kerrie Mengersen
- School of Mathematical Sciences, Queensland University of Technology, Brisbane, Queensland, Australia
| | - Shilu Tong
- School of Public Health and Social Work; Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Queensland, Australia
- School of Public Health and Institute of Environment and Human Health, Anhui Medical University, Hefei, Anhui, China
- Shanghai Children's Medical Centre, Shanghai Jiao-Tong University, Shanghai, China
| | - Lei Feng
- Shandong Provincial Centre of Disease Control and Prevention, Jinan, China
| | - Li Zhang
- Shandong Provincial Centre of Disease Control and Prevention, Jinan, China
| | - Guifang Liu
- Shandong Provincial Centre of Disease Control and Prevention, Jinan, China
| | - Aiqiang Xu
- Shandong Provincial Centre of Disease Control and Prevention, Jinan, China
| | - Wenbiao Hu
- School of Public Health and Social Work; Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Queensland, Australia.
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27
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Association of sociodemographic factors and internet query data with pertussis infections in Shandong, China. Epidemiol Infect 2019; 147:e302. [PMID: 31727192 PMCID: PMC6873159 DOI: 10.1017/s0950268819001924] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022] Open
Abstract
This study explored how internet queries vary in facilitating monitoring of pertussis, and the effects of sociodemographic characteristics on such variation by city in Shandong province, China. We collected weekly pertussis notifications, Baidu Index (BI) data and yearly sociodemographic data at the city level between 1 January 2009 and 31 December 2017. Spearman's correlation was performed for temporal risk indices, generalised linear models and regression tree models were developed to identify the hierarchical effects and the threshold between sociodemographic factors and internet query data with pertussis surveillance. The BI was correlated with pertussis notifications, with a strongly spatial variation among cities in temporal risk indices (composite temporal risk metric (CTRM) range: 0.59–1.24). The percentage of urban population (relative risk (RR): 1.05, 95% confidence interval (CI) 1.03–1.07), the proportion of highly educated population (RR: 1.27, 95% CI 1.16–1.39) and the internet access rate (RR: 1.04, 95% CI 1.02–1.05) were correlated with CTRM. Higher RRs in the three identified sociodemographic factors were associated with higher stratified CTRM. The percentage of highly educated population was the most important determinant in the BI with pertussis surveillance. The findings may lead to spatially-specific criteria to inform development of an early warning system of pertussis infections using internet query data.
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28
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Chen Y, Zhang Y, Xu Z, Wang X, Lu J, Hu W. Avian Influenza A (H7N9) and related Internet search query data in China. Sci Rep 2019; 9:10434. [PMID: 31320681 PMCID: PMC6639335 DOI: 10.1038/s41598-019-46898-y] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2018] [Accepted: 07/05/2019] [Indexed: 02/07/2023] Open
Abstract
The use of Internet-based systems for infectious disease surveillance has been increasingly explored in recent years. However, few studies have used Internet search query or social media data to monitor spatial and temporal trends of avian influenza in China. This study investigated the potential of using search query and social media data in detecting and monitoring avian influenza A (H7N9) cases in humans in China. We collected weekly data on laboratory-confirmed H7N9 cases in humans, as well as H7N9-related Baidu Search Index (BSI) and Weibo Posting Index (WPI) data in China from 2013 to 2017, to explore the spatial and temporal trends of H7N9 cases and H7N9-related Internet search queries. Our findings showed a positive relationship of H7N9 cases with BSI and WPI search queries spatially and temporally. The outbreak threshold time and peak time of H7N9-related BSI and WPI searches preceded H7N9 cases in most years. Seasonal autoregressive integrated moving average (SARIMA) models with BSI (β = 0.008, p < 0.001) and WPI (β = 0.002, p = 0.036) were used to predict the number of H7N9 cases. Regression tree model analysis showed that the average H7N9 cases increased by over 2.4-fold (26.8/11) when BSI for H7N9 was > = 11524. Both BSI and WPI data could be used as indicators to develop an early warning system for H7N9 outbreaks in the future.
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Affiliation(s)
- Ying Chen
- School of Public Health, Sun Yat-sen University, Guangzhou, China
- School of Public Health and Social Work, Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia
| | - Yuzhou Zhang
- School of Public Health and Social Work, Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia
| | - Zhiwei Xu
- School of Public Health and Social Work, Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia
| | - Xuanzhuo Wang
- School of Public Health, Sun Yat-sen University, Guangzhou, China
| | - Jiahai Lu
- School of Public Health, Sun Yat-sen University, Guangzhou, China.
| | - Wenbiao Hu
- School of Public Health and Social Work, Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Australia.
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29
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Zhang Y, Yakob L, Bonsall MB, Hu W. Predicting seasonal influenza epidemics using cross-hemisphere influenza surveillance data and local internet query data. Sci Rep 2019; 9:3262. [PMID: 30824756 PMCID: PMC6397245 DOI: 10.1038/s41598-019-39871-2] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/26/2018] [Accepted: 02/04/2019] [Indexed: 11/16/2022] Open
Abstract
Can early warning systems be developed to predict influenza epidemics? Using Australian influenza surveillance and local internet search query data, this study investigated whether seasonal influenza epidemics in China, the US and the UK can be predicted using empirical time series analysis. Weekly national number of respiratory cases positive for influenza virus infection that were reported to the FluNet surveillance system in Australia, China, the US and the UK were obtained from World Health Organization FluNet surveillance between week 1, 2010, and week 9, 2018. We collected combined search query data for the US and the UK from Google Trends, and for China from Baidu Index. A multivariate seasonal autoregressive integrated moving average model was developed to track influenza epidemics using Australian influenza and local search data. Parameter estimates for this model were generally consistent with the observed values. The inclusion of search metrics improved the performance of the model with high correlation coefficients (China = 0.96, the US = 0.97, the UK = 0.96, p < 0.01) and low Maximum Absolute Percent Error (MAPE) values (China = 16.76, the US = 96.97, the UK = 125.42). This study demonstrates the feasibility of combining (Australia) influenza and local search query data to predict influenza epidemics a different (northern hemisphere) scales.
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Affiliation(s)
- Yuzhou Zhang
- School of Public Health and Social Work; Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Queensland, Australia
| | - Laith Yakob
- Faculty of Infectious and Tropical Diseases, London School of Hygiene & Tropical Medicine, London, UK
| | - Michael B Bonsall
- Mathematical Ecology Research Group, Department of Zoology, University of Oxford, Oxford, UK
| | - Wenbiao Hu
- School of Public Health and Social Work; Institute of Health and Biomedical Innovation, Queensland University of Technology, Brisbane, Queensland, Australia.
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30
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Chen S, Liu X, Wu Y, Xu G, Zhang X, Mei S, Zhang Z, O'Meara M, O'Gara MC, Tan X, Li L. The application of meteorological data and search index data in improving the prediction of HFMD: A study of two cities in Guangdong Province, China. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 652:1013-1021. [PMID: 30380469 DOI: 10.1016/j.scitotenv.2018.10.304] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2018] [Revised: 10/22/2018] [Accepted: 10/22/2018] [Indexed: 02/05/2023]
Abstract
Hand, foot and mouth disease (HFMD) is a public health issue in China, and its incidence in Guangdong Province is higher than the national average. Previous studies have found climatic factors have an influential role in the transmission of HFMD. Internet search technology has been shown to predict some infectious disease epidemics and is a potential resource in tracking epidemics in countries where the use of Internet search index data is prevalent. This study aims to improve the prediction of HFMD in two Chinese cities, Shantou and Shenzhen in Guangdong Province, applying both meteorological data and Baidu search indices to create a HFMD forecasting model. To this end, the relationship between meteorological factors and HFMD was found to be linear in both cities, while the relationship between search engine data and HFMD was not consistent. The results of our study suggest that using both Internet search and meteorological data can improve the prediction of HFMD incidence. Using comparative analysis of both cities, we posit that improved quality search indices enhance prediction of HFMD.
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Affiliation(s)
- Shaoxing Chen
- Injury Prevention Research Center, Shantou University Medical College, Shantou, Guangdong 515041, China; Department of Community monitoring, The First Affiliated Hospital of Shantou University Medical College, Shantou, Guangdong, China
| | - Xiaojian Liu
- Shenzhen Center for Disease Control and Prevention, Shenzhen, China.
| | - Yongsheng Wu
- Shenzhen Center for Disease Control and Prevention, Shenzhen, China.
| | - Guangxing Xu
- Shantou Center for Disease Control and Prevention, Shantou, China
| | - Xubin Zhang
- Shantou Center for Disease Control and Prevention, Shantou, China
| | - Shujiang Mei
- Shenzhen Center for Disease Control and Prevention, Shenzhen, China.
| | - Zhen Zhang
- Shenzhen Center for Disease Control and Prevention, Shenzhen, China.
| | - Michael O'Meara
- Department of Information Technology, Shantou University Medical College, Shantou, Guangdong 515041, China.
| | - Mary Clare O'Gara
- Department of Nursing, Shantou University Medical College, Shantou, Guangdong 515041, China.
| | - Xuerui Tan
- Department of Cardiology, The First Affiliated Hospital of Shantou University Medical College, Shantou, Guangdong, China
| | - Liping Li
- Injury Prevention Research Center, Shantou University Medical College, Shantou, Guangdong 515041, China.
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31
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Li K, Liu M, Feng Y, Ning C, Ou W, Sun J, Wei W, Liang H, Shao Y. Using Baidu Search Engine to Monitor AIDS Epidemics Inform for Targeted intervention of HIV/AIDS in China. Sci Rep 2019; 9:320. [PMID: 30674890 PMCID: PMC6344537 DOI: 10.1038/s41598-018-35685-w] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/06/2018] [Accepted: 11/09/2018] [Indexed: 11/30/2022] Open
Abstract
China’s reported cases of Human Immunodeficiency Virus (HIV) and AIDS increased from over 50000 in 2011 to more than 130000 in 2017, while AIDS related search indices on Baidu from 2.1 million to 3.7 million in the same time periods. In China, people seek AIDS related knowledge from Baidu which one of the world’s largest search engine. We study the relationship of national HIV surveillance data with the Baidu index (BDI) and use it to monitor AIDS epidemic and inform targeted intervention. After screening keywords and making index composition, we used seasonal autoregressive integrated moving average (ARIMA) modeling. The most correlated search engine query data was obtained by using ARIMA with external variables (ARIMAX) model for epidemic prediction. A significant correlation between monthly HIV/AIDS report cases and Baidu Composite Index (r = 0.845, P < 0.001) was observed using time series plot. Compared with the ARIMA model based on AIDS surveillance data, the ARIMAX model with Baidu Composite Index had the minimal an Akaike information criterion (AIC, 839.42) and the most exact prediction (MAPE of 6.11%). We showed that there are close correlations of the same trends between BDI and HIV/AIDS reports cases for both increasing and decreasing AIDS epidemic. Therefore, the Baidu search query data may be a good useful indicator for reliably monitoring and predicting HIV/AIDS epidemic in China.
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Affiliation(s)
- Kang Li
- Guangxi Key Laboratory of AIDS Prevention and Treatment & Guangxi Universities Key Laboratory of Prevention and Control of Highly Prevalent Disease, School of Public Health, Guangxi Medical University, Nanning, Guangxi, China.,State Key Laboratory for Infectious Disease Prevention and Control, National Center for AIDS/STD Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Meiliang Liu
- Guangxi Key Laboratory of AIDS Prevention and Treatment & Guangxi Universities Key Laboratory of Prevention and Control of Highly Prevalent Disease, School of Public Health, Guangxi Medical University, Nanning, Guangxi, China
| | - Yi Feng
- State Key Laboratory for Infectious Disease Prevention and Control, National Center for AIDS/STD Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Chuanyi Ning
- Guangxi Key Laboratory of AIDS Prevention and Treatment & Guangxi Universities Key Laboratory of Prevention and Control of Highly Prevalent Disease, School of Public Health, Guangxi Medical University, Nanning, Guangxi, China
| | - Weidong Ou
- Guangxi Key Laboratory of AIDS Prevention and Treatment & Guangxi Universities Key Laboratory of Prevention and Control of Highly Prevalent Disease, School of Public Health, Guangxi Medical University, Nanning, Guangxi, China.,State Key Laboratory for Infectious Disease Prevention and Control, National Center for AIDS/STD Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Jia Sun
- State Key Laboratory for Infectious Disease Prevention and Control, National Center for AIDS/STD Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China
| | - Wudi Wei
- Guangxi Key Laboratory of AIDS Prevention and Treatment & Guangxi Universities Key Laboratory of Prevention and Control of Highly Prevalent Disease, School of Public Health, Guangxi Medical University, Nanning, Guangxi, China
| | - Hao Liang
- Guangxi Key Laboratory of AIDS Prevention and Treatment & Guangxi Universities Key Laboratory of Prevention and Control of Highly Prevalent Disease, School of Public Health, Guangxi Medical University, Nanning, Guangxi, China.
| | - Yiming Shao
- Guangxi Key Laboratory of AIDS Prevention and Treatment & Guangxi Universities Key Laboratory of Prevention and Control of Highly Prevalent Disease, School of Public Health, Guangxi Medical University, Nanning, Guangxi, China. .,State Key Laboratory for Infectious Disease Prevention and Control, National Center for AIDS/STD Control and Prevention, Chinese Center for Disease Control and Prevention, Beijing, China.
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32
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Guo P, Zhang Q, Chen Y, Xiao J, He J, Zhang Y, Wang L, Liu T, Ma W. An ensemble forecast model of dengue in Guangzhou, China using climate and social media surveillance data. THE SCIENCE OF THE TOTAL ENVIRONMENT 2019; 647:752-762. [PMID: 30092532 DOI: 10.1016/j.scitotenv.2018.08.044] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/15/2018] [Revised: 07/08/2018] [Accepted: 08/03/2018] [Indexed: 02/05/2023]
Abstract
BACKGROUND China experienced an unprecedented outbreak of dengue in 2014, and the number of dengue cases reached the highest level over the past 25 years. There is a significant delay in the release of official case count data, and our ability to timely track the timing and magnitude of local outbreaks of dengue remains limited. MATERIAL AND METHODS We developed an ensemble penalized regression algorithm (EPRA) for initializing near-real time forecasts of the dengue epidemic trajectory by integrating different penalties (LASSO, Ridge, Elastic Net, SCAD and MCP) with the techniques of iteratively sampling and model averaging. Multiple streams of near-real time data including dengue-related Baidu searches, Sina Weibo posts, and climatic conditions with historical dengue incidence were used. We compared the predictive power of the EPRA with the alternates, penalized regression models using single penalties, to retrospectively forecast weekly dengue incidence and detect outbreak occurrence defined using different cutoffs, during the periods of 2011-2016 in Guangzhou, south China. RESULTS The EPRA showed the best or at least comparable performance for 1-, 2-week ahead out-of-sample and leave-one-out cross validation forecasts. The findings indicate that skillful near-real time forecasts of dengue and confidence in those predictions can be made. For detecting dengue outbreaks, the EPRA predicted periods of high incidence of dengue more accurately than the alternates. CONCLUSION This study developed a statistically rigorous approach for near-real time forecast of dengue in China. The EPRA provides skillful forecasts and can be used as timely and complementary ways to assess dengue dynamics, which will help to design interventions to mitigate dengue transmission.
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Affiliation(s)
- Pi Guo
- Department of Preventive Medicine, Shantou University Medical College, No. 22 Xinling Road, Shantou 515041, China
| | - Qin Zhang
- Good Clinical Practice Office, Cancer Hospital of Shantou University Medical College, Shantou 515041, China
| | - Yuliang Chen
- Department of Preventive Medicine, Shantou University Medical College, No. 22 Xinling Road, Shantou 515041, China
| | - Jianpeng Xiao
- Guangdong Provincial Institute of Public Health, Guangdong Provincial Center for Disease Control and Prevention, Guangzhou 511430, China
| | - Jianfeng He
- Guangdong Provincial Center for Disease Control and Prevention, Guangzhou 511430, China
| | - Yonghui Zhang
- Guangdong Provincial Center for Disease Control and Prevention, Guangzhou 511430, China
| | - Li Wang
- Shenzhen Institutes of Advanced Technology, Chinese Academy of Sciences, 1068 Xueyuan Avenue, Shenzhen University Town, Shenzhen 518055, China
| | - Tao Liu
- Guangdong Provincial Institute of Public Health, Guangdong Provincial Center for Disease Control and Prevention, Guangzhou 511430, China
| | - Wenjun Ma
- Guangdong Provincial Institute of Public Health, Guangdong Provincial Center for Disease Control and Prevention, Guangzhou 511430, China.
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33
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Benedum CM, Seidahmed OME, Eltahir EAB, Markuzon N. Statistical modeling of the effect of rainfall flushing on dengue transmission in Singapore. PLoS Negl Trop Dis 2018; 12:e0006935. [PMID: 30521523 PMCID: PMC6283346 DOI: 10.1371/journal.pntd.0006935] [Citation(s) in RCA: 63] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/11/2018] [Accepted: 10/19/2018] [Indexed: 12/13/2022] Open
Abstract
BACKGROUND Rainfall patterns are one of the main drivers of dengue transmission as mosquitoes require standing water to reproduce. However, excess rainfall can be disruptive to the Aedes reproductive cycle by "flushing out" aquatic stages from breeding sites. We developed models to predict the occurrence of such "flushing" events from rainfall data and to evaluate the effect of flushing on dengue outbreak risk in Singapore between 2000 and 2016. METHODS We used machine learning and regression models to predict days with "flushing" in the dataset based on entomological and corresponding rainfall observations collected in Singapore. We used a distributed lag nonlinear logistic regression model to estimate the association between the number of flushing events per week and the risk of a dengue outbreak. RESULTS Days with flushing were identified through the developed logistic regression model based on entomological data (test set accuracy = 92%). Predictions were based upon the aggregate number of thresholds indicating unusually rainy conditions over multiple weeks. We observed a statistically significant reduction in dengue outbreak risk one to six weeks after flushing events occurred. For weeks with five or more flushing events, compared with weeks with no flushing events, the risk of a dengue outbreak in the subsequent weeks was reduced by 16% to 70%. CONCLUSIONS We have developed a high accuracy predictive model associating temporal rainfall patterns with flushing conditions. Using predicted flushing events, we have demonstrated a statistically significant reduction in dengue outbreak risk following flushing, with the time lag well aligned with time of mosquito development from larvae and infection transmission. Vector control programs should consider the effects of hydrological conditions in endemic areas on dengue transmission.
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Affiliation(s)
- Corey M. Benedum
- Draper, Cambridge, Massachusetts, United States of America
- Department of Epidemiology, Boston University School of Public Health, Boston, Massachusetts, United States of America
| | - Osama M. E. Seidahmed
- Ralph M Parsons Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
| | - Elfatih A. B. Eltahir
- Ralph M Parsons Laboratory, Massachusetts Institute of Technology, Cambridge, Massachusetts, United States of America
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Ho HT, Carvajal TM, Bautista JR, Capistrano JDR, Viacrusis KM, Hernandez LFT, Watanabe K. Using Google Trends to Examine the Spatio-Temporal Incidence and Behavioral Patterns of Dengue Disease: A Case Study in Metropolitan Manila, Philippines. Trop Med Infect Dis 2018; 3:E118. [PMID: 30423898 PMCID: PMC6306840 DOI: 10.3390/tropicalmed3040118] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/22/2018] [Revised: 10/31/2018] [Accepted: 11/05/2018] [Indexed: 11/16/2022] Open
Abstract
Dengue is a major public health concern and an economic burden in the Philippines. Despite the country's improved dengue surveillance, it still suffers from various setbacks and needs to be complemented with alternative approaches. Previous studies have demonstrated the potential of Internet-based surveillance such as Google Dengue Trends (GDT) in supplementing current epidemiological methods for predicting future dengue outbreaks and patterns. With this, our study has two objectives: (1) assess the temporal relationship of weekly GDT and dengue incidence in Metropolitan Manila from 2009⁻2014; and (2) examine the health-seeking behavior based on dengue-related search queries of the population. The study collated the population statistics and reported dengue cases in Metropolitan Manila from respective government agencies to calculate the dengue incidence (DI) on a weekly basis for the entire region and annually per city. Data processing of GDT and dengue incidence was performed by conducting an 'adjustment' and scaling procedures, respectively, and further analyzed for correlation and cross-correlation analyses using Pearson's correlation. The relative search volume of the term 'dengue' and top dengue-related search queries in Metropolitan Manila were obtained and organized from the Google Trends platform. Afterwards, a thematic analysis was employed, and word clouds were generated to examine the health behavior of the population. Results showed that weekly temporal GDT pattern are closely similar to the weekly DI pattern in Metropolitan Manila. Further analysis showed that GDT has a moderate and positive association with DI when adjusted or scaled, respectively. Cross-correlation analysis revealed a delayed effect where GDT leads DI by 1⁻2 weeks. Thematic analysis of dengue-related search queries indicated 5 categories namely; (a) dengue, (b) sign and symptoms of dengue, (c) treatment and prevention, (d) mosquito, and (e) other diseases. The majority of the search queries were classified in 'signs and symptoms' which indicate the health-seeking behavior of the population towards the disease. Therefore, GDT can be utilized to complement traditional disease surveillance methods combined with other factors that could potentially identify dengue hotspots and help in public health decisions.
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Affiliation(s)
- Howell T Ho
- Office of the Vice President of Academic Affairs, Trinity University of Asia, Quezon City 1112, Philippines.
| | - Thaddeus M Carvajal
- Department of Civil and Environmental Engineering-Faculty of Engineering, Ehime University, Matsuyama 790-8577, Japan.
- Biological Control Research Unit, Center for Natural Science and Environmental Research-College of Science, De La Salle University, Taft Ave Manila 1004, Philippines.
- Biology Department-College of Science, De La Salle University, Manila 1004, Philippines.
| | - John Robert Bautista
- Wee Kim Wee School of Communication and Information, Nanyang Technological University, 637718, Singapore.
| | - Jayson Dale R Capistrano
- Biological Control Research Unit, Center for Natural Science and Environmental Research-College of Science, De La Salle University, Taft Ave Manila 1004, Philippines.
- Biology Department-College of Science, De La Salle University, Manila 1004, Philippines.
| | - Katherine M Viacrusis
- Department of Civil and Environmental Engineering-Faculty of Engineering, Ehime University, Matsuyama 790-8577, Japan.
| | - Lara Fides T Hernandez
- Office of the Vice President of Academic Affairs, Trinity University of Asia, Quezon City 1112, Philippines.
- Department of Civil and Environmental Engineering-Faculty of Engineering, Ehime University, Matsuyama 790-8577, Japan.
- Antimicrobial Resistance Surveillance Laboratory, Research Institute for Tropical Medicine, Muntinlupa City 1781, Philippines.
| | - Kozo Watanabe
- Department of Civil and Environmental Engineering-Faculty of Engineering, Ehime University, Matsuyama 790-8577, Japan.
- Biological Control Research Unit, Center for Natural Science and Environmental Research-College of Science, De La Salle University, Taft Ave Manila 1004, Philippines.
- Biology Department-College of Science, De La Salle University, Manila 1004, Philippines.
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He G, Chen Y, Chen B, Wang H, Shen L, Liu L, Suolang D, Zhang B, Ju G, Zhang L, Du S, Jiang X, Pan Y, Min Z. Using the Baidu Search Index to Predict the Incidence of HIV/AIDS in China. Sci Rep 2018; 8:9038. [PMID: 29899360 PMCID: PMC5998029 DOI: 10.1038/s41598-018-27413-1] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/09/2017] [Accepted: 06/04/2018] [Indexed: 11/23/2022] Open
Abstract
Based on a panel of 30 provinces and a timeframe from January 2009 to December 2013, we estimate the association between monthly human immunodeficiency virus/acquired immune deficiency syndrome (HIV/AIDS) incidence and the relevant Internet search query volumes in Baidu, the most widely used search engine among the Chinese. The pooled mean group (PMG) model show that the Baidu search index (BSI) positively predicts the increase in HIV/AIDS incidence, with a 1% increase in BSI associated with a 2.1% increase in HIV/AIDS incidence on average. This study proposes a promising method to estimate and forecast the incidence of HIV/AIDS, a type of infectious disease that is culturally sensitive and highly unevenly distributed in China; the method can be taken as a complement to a traditional HIV/AIDS surveillance system.
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Affiliation(s)
- Guangye He
- School of Social and Behavioral Sciences, Nanjing University, Nanjing, 210023, China.
| | - Yunsong Chen
- School of Social and Behavioral Sciences, Nanjing University, Nanjing, 210023, China. .,The Johns Hopkins University-Nanjing University Center for Chinese and American Studies, Nanjing, 210093, China.
| | - Buwei Chen
- The First Affiliated Hospital with Nanjing Medical University, Nanjing, 210029, China.
| | - Hao Wang
- Department of Medicine, Tongji Hospital, Tongji University, Shanghai, 200065, China
| | - Li Shen
- Department of Cardiothoracic Surgery, Shanghai Children's Hospital, Shanghai Jiao Tong University, Shanghai, 200062, China
| | - Liu Liu
- School of Social and Behavioral Sciences, Nanjing University, Nanjing, 210023, China
| | - Deji Suolang
- School of Social and Behavioral Sciences, Nanjing University, Nanjing, 210023, China
| | - Boyang Zhang
- School of Social and Behavioral Sciences, Nanjing University, Nanjing, 210023, China
| | - Guodong Ju
- School of Social and Behavioral Sciences, Nanjing University, Nanjing, 210023, China
| | - Liangliang Zhang
- School of Social and Behavioral Sciences, Nanjing University, Nanjing, 210023, China
| | - Sijia Du
- School of Social and Behavioral Sciences, Nanjing University, Nanjing, 210023, China
| | - Xiangxue Jiang
- School of Social and Behavioral Sciences, Nanjing University, Nanjing, 210023, China
| | - Yu Pan
- School of Social and Behavioral Sciences, Nanjing University, Nanjing, 210023, China
| | - Zuntao Min
- School of Social and Behavioral Sciences, Nanjing University, Nanjing, 210023, China
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Kaveh-Yazdy F, Zareh-Bidoki AM. Search engines, news wires and digital epidemiology: Presumptions and facts. Int J Med Inform 2018; 115:53-63. [PMID: 29779720 DOI: 10.1016/j.ijmedinf.2018.03.017] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2017] [Revised: 03/30/2018] [Accepted: 03/31/2018] [Indexed: 02/06/2023]
Abstract
BACKGROUND Digital epidemiology tries to identify diseases dynamics and spread behaviors using digital traces collected via search engines logs and social media posts. However, the impacts of news on information-seeking behaviors have been remained unknown. METHODS Data employed in this research provided from two sources, (1) Parsijoo search engine query logs of 48 months, and (2) a set of documents of 28 months of Parsijoo's news service. Two classes of topics, i.e. macro-topics and micro-topics were selected to be tracked in query logs and news. Keywords of the macro-topics were automatically generated using web provided resources and exceeded 10k. Keyword set of micro-topics were limited to a numerable list including terms related to diseases and health-related activities. The tests are established in the form of three studies. Study A includes temporal analyses of 7 macro-topics in query logs. Study B considers analyzing seasonality of searching patterns of 9 micro-topics, and Study C assesses the impact of news media coverage on users' health-related information-seeking behaviors. RESULTS Study A showed that the hourly distribution of various macro-topics followed the changes in social activity level. Conversely, the interestingness of macro-topics did not follow the regulation of topic distributions. Among macro-topics, "Pharmacotherapy" has highest interestingness level and wider time-window of popularity. In Study B, seasonality of a limited number of diseases and health-related activities were analyzed. Trends of infectious diseases, such as flu, mumps and chicken pox were seasonal. Due to seasonality of most of diseases covered in national vaccination plans, the trend belonging to "Immunization and Vaccination" was seasonal, as well. Cancer awareness events caused peaks in search trends of "Cancer" and "Screening" micro-topics in specific days of each year that mimic repeated patterns which may mistakenly be identified as seasonality. In study C, we assessed the co-integration and correlation between news and query trends. Our results demonstrated that micro-topics sparsely covered in news media had lowest level of impressiveness and, subsequently, the lowest impact on users' intents. CONCLUSION Our results can reveal public reaction to social events, diseases and prevention procedures. Furthermore, we found that news trends are co-integrated with search queries and are able to reveal health-related events; however, they cannot be used interchangeably. It is recommended that the user-generated contents and news documents are analyzed mutually and interactively.
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Huang DC, Wang JF. Monitoring hand, foot and mouth disease by combining search engine query data and meteorological factors. THE SCIENCE OF THE TOTAL ENVIRONMENT 2018; 612:1293-1299. [PMID: 28898935 DOI: 10.1016/j.scitotenv.2017.09.017] [Citation(s) in RCA: 15] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/26/2017] [Revised: 09/03/2017] [Accepted: 09/03/2017] [Indexed: 05/12/2023]
Abstract
Hand, foot and mouth disease (HFMD) has been recognized as a significant public health threat and poses a tremendous challenge to disease control departments. To date, the relationship between meteorological factors and HFMD has been documented, and public interest of disease has been proven to be trackable from the Internet. However, no study has explored the combination of these two factors in the monitoring of HFMD. Therefore, the main aim of this study was to develop an effective monitoring model of HFMD in Guangzhou, China by utilizing historical HFMD cases, Internet-based search engine query data and meteorological factors. To this end, a case study was conducted in Guangzhou, using a network-based generalized additive model (GAM) including all factors related to HFMD. Three other models were also constructed using some of the variables for comparison. The results suggested that the model showed the best estimating ability when considering all of the related factors.
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Affiliation(s)
- Da-Cang Huang
- State Key Laboratory of Resources and Environmental Information System, Institute of Geographic Science and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; Key Laboratory of Surveillance and Early Warning on Infectious Disease, Chinese Center for Disease Control and Prevention, Beijing 102206, China; University of Chinese Academy of Sciences, Beijing 100049, China
| | - Jin-Feng Wang
- State Key Laboratory of Resources and Environmental Information System, Institute of Geographic Science and Natural Resources Research, Chinese Academy of Sciences, Beijing 100101, China; University of Chinese Academy of Sciences, Beijing 100049, China; Jiangsu Center for Collaborative Innovation in Geographical Information Resource Development and Application, Nanjing 210023, China.
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Du Z, Xu L, Zhang W, Zhang D, Yu S, Hao Y. Predicting the hand, foot, and mouth disease incidence using search engine query data and climate variables: an ecological study in Guangdong, China. BMJ Open 2017; 7:e016263. [PMID: 28988169 PMCID: PMC5640051 DOI: 10.1136/bmjopen-2017-016263] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
OBJECTIVES Hand, foot, and mouth disease (HFMD) has caused a substantial burden in China, especially in Guangdong Province. Based on the enhanced surveillance system, we aimed to explore whether the addition of temperate and search engine query data improves the risk prediction of HFMD. DESIGN Ecological study. SETTING AND PARTICIPANTS Information on the confirmed cases of HFMD, climate parameters and search engine query logs was collected. A total of 1.36 million HFMD cases were identified from the surveillance system during 2011-2014. Analyses were conducted at aggregate level and no confidential information was involved. OUTCOME MEASURES A seasonal autoregressive integrated moving average (ARIMA) model with external variables (ARIMAX) was used to predict the HFMD incidence from 2011 to 2014, taking into account temperature and search engine query data (Baidu Index, BDI). Statistics of goodness-of-fit and precision of prediction were used to compare models (1) based on surveillance data only, and with the addition of (2) temperature, (3) BDI, and (4) both temperature and BDI. RESULTS A high correlation between HFMD incidence and BDI (r=0.794, p<0.001) or temperature (r=0.657, p<0.001) was observed using both time series plot and correlation matrix. A linear effect of BDI (without lag) and non-linear effect of temperature (1 week lag) on HFMD incidence were found in a distributed lag non-linear model. Compared with the model based on surveillance data only, the ARIMAX model including BDI reached the best goodness-of-fit with an Akaike information criterion (AIC) value of -345.332, whereas the model including both BDI and temperature had the most accurate prediction in terms of the mean absolute percentage error (MAPE) of 101.745%. CONCLUSIONS An ARIMAX model incorporating search engine query data significantly improved the prediction of HFMD. Further studies are warranted to examine whether including search engine query data also improves the prediction of other infectious diseases in other settings.
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Affiliation(s)
- Zhicheng Du
- Department of Medical Statistics and Epidemiology & Health Information Research Center & Guangdong Key Laboratory of Medicine, School of Public Health, Sun Yat-sen University, Guangzhou, China
- Key Laboratory of Tropical Diseases and Control of the Ministry of Education, Guangzhou, China
| | - Lin Xu
- Department of Medical Statistics and Epidemiology & Health Information Research Center & Guangdong Key Laboratory of Medicine, School of Public Health, Sun Yat-sen University, Guangzhou, China
- Key Laboratory of Tropical Diseases and Control of the Ministry of Education, Guangzhou, China
- School of Public Health, University of Hong Kong, Hong Kong, China
| | - Wangjian Zhang
- Department of Medical Statistics and Epidemiology & Health Information Research Center & Guangdong Key Laboratory of Medicine, School of Public Health, Sun Yat-sen University, Guangzhou, China
- Key Laboratory of Tropical Diseases and Control of the Ministry of Education, Guangzhou, China
| | - Dingmei Zhang
- Department of Medical Statistics and Epidemiology & Health Information Research Center & Guangdong Key Laboratory of Medicine, School of Public Health, Sun Yat-sen University, Guangzhou, China
- Key Laboratory of Tropical Diseases and Control of the Ministry of Education, Guangzhou, China
| | - Shicheng Yu
- Chinese Center for Disease Control and Prevention, Beijing, China
| | - Yuantao Hao
- Department of Medical Statistics and Epidemiology & Health Information Research Center & Guangdong Key Laboratory of Medicine, School of Public Health, Sun Yat-sen University, Guangzhou, China
- Key Laboratory of Tropical Diseases and Control of the Ministry of Education, Guangzhou, China
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