1
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Spencer RB, Yusov A, Dillon AM, Tiwari A, Arteaga O, Sburlati S, Whittaker SJ, Wu W, Chen S, Shtukenberg AG, Ward MD, Kahr B, Lee SS. Guest removal from ring-banded guanidinium organosulfonate hydrogen-bonded frameworks. NANOSCALE 2025. [PMID: 40395151 DOI: 10.1039/d5nr00467e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2025]
Abstract
Crystalline fibers of the hydrogen-bonded bis(guanidinium)naphthalene-1,5-disulfonate framework containing ethanol guest molecules, (G)2(1,5-NDS)⊃EtOH, twist as they grow when deposited from solution under conditions that favor low nucleation densities and high branching rates. Spherulites comprising helicoidal fibers with a pitch of 3.4 ± 0.5 μm display rhythmic concentric variations in interference colors between crossed polarizers. Tightly packed fibers and platelets systematically change orientations between flat-on and edge-on crystallites with respect to the substrate surface. Mueller matrix imaging reveals periodic oscillations in the absolute magnitude of the linear retardance and an associated bisignate circular retardance. Single-crystal X-ray diffraction data demonstrates that the twisted (G)2(1,5-NDS)⊃EtOH crystals adopt a bilayer packing motif with ethanol as guest molecules (space group P1̄). When the banded spherulite films were subsequently heated at 130 °C, the solvated phase was converted to a guest-free crystalline phase (space group P21/c). This transition resulted in loss of linear retardance.
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Affiliation(s)
- Rochelle B Spencer
- New York University, Molecular Design Institute, Department of Chemistry, New York, NY 10003, USA.
| | - Anna Yusov
- New York University, Molecular Design Institute, Department of Chemistry, New York, NY 10003, USA.
| | - Alexandra M Dillon
- New York University, Molecular Design Institute, Department of Chemistry, New York, NY 10003, USA.
| | - Akash Tiwari
- New York University, Molecular Design Institute, Department of Chemistry, New York, NY 10003, USA.
| | - Oriol Arteaga
- University of Barcelona, Department of Applied Physics, 08028 Barcelona, Spain
| | - Sophia Sburlati
- New York University, Molecular Design Institute, Department of Chemistry, New York, NY 10003, USA.
| | - St John Whittaker
- New York University, Molecular Design Institute, Department of Chemistry, New York, NY 10003, USA.
| | - Wantong Wu
- New York University, Molecular Design Institute, Department of Chemistry, New York, NY 10003, USA.
| | - Sixian Chen
- New York University, Molecular Design Institute, Department of Chemistry, New York, NY 10003, USA.
| | - Alexander G Shtukenberg
- New York University, Molecular Design Institute, Department of Chemistry, New York, NY 10003, USA.
| | - Michael D Ward
- New York University, Molecular Design Institute, Department of Chemistry, New York, NY 10003, USA.
| | - Bart Kahr
- New York University, Molecular Design Institute, Department of Chemistry, New York, NY 10003, USA.
| | - Stephanie S Lee
- New York University, Molecular Design Institute, Department of Chemistry, New York, NY 10003, USA.
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2
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Koupepidou K, Eaby AC, Sensharma D, Javan Nikkhah S, He T, Lusi M, Vandichel M, Barbour LJ, Mukherjee S, Zaworotko MJ. A Needle in a Haystack: Transient Porosity in a Closed Pore Square Lattice Coordination Network. Angew Chem Int Ed Engl 2025; 64:e202423521. [PMID: 39834321 DOI: 10.1002/anie.202423521] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2024] [Revised: 01/20/2025] [Accepted: 01/20/2025] [Indexed: 01/22/2025]
Abstract
Guest transport through discrete voids (closed pores) in crystalline solids is poorly understood. Herein, we report the gas sorption properties of a nonporous coordination network, {[Co(bib)2Cl2] ⋅ 2MeOH}n (sql-bib-Co-Cl-α), featuring square lattice (sql) topology and the bent linker 1,3-bis(1H-imidazol-1-yl)benzene (bib). The as-synthesized sql-bib-Co-Cl-α has 11.3 % (313 Å3) of its unit cell volume in closed pores occupied by methanol (MeOH). Upon desolvation and air exposure, sql-bib-Co-Cl-α underwent a single-crystal to single-crystal (SC-SC) phase transformation to sql-bib-Co-Cl-β', wherein MeOH was replaced by water. Activation (vacuum or N2 flow) resulted in dehydration and retention of the closed pores, affording sql-bib-Co-Cl-β with 7.7 % (194 Å3) guest-accessible space. sql-bib-Co-Cl-β was found to preferentially adsorb C2H2 (at 265 K) over CO2 (at 195 K) through gate-opening mechanisms, at gate-opening pressures of 59.8 and 27.7 kPa, respectively, while other C2 gases were excluded. PXRD was used to monitor transformations between the three phases of sql-bib-Co-Cl, while in situ DSC, in situ SCXRD under CO2 pressure, and computational studies provided insight into the guest transport mechanism, which we attribute to the angular, flexible nature of the bib ligand. Further, the preferential adsorption of C2H2 over CO2 and other C2 gases suggests that transiently porous sorbents might have utility in separations.
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Affiliation(s)
- Kyriaki Koupepidou
- Bernal Institute, Department of Chemical Sciences, University of Limerick, Limerick, V94 T9PX, Ireland
| | - Alan C Eaby
- Bernal Institute, Department of Chemical Sciences, University of Limerick, Limerick, V94 T9PX, Ireland
| | - Debobroto Sensharma
- Bernal Institute, Department of Chemical Sciences, University of Limerick, Limerick, V94 T9PX, Ireland
| | - Sousa Javan Nikkhah
- Bernal Institute, Department of Chemical Sciences, University of Limerick, Limerick, V94 T9PX, Ireland
| | - Tao He
- Bernal Institute, Department of Chemical Sciences, University of Limerick, Limerick, V94 T9PX, Ireland
| | - Matteo Lusi
- Bernal Institute, Department of Chemical Sciences, University of Limerick, Limerick, V94 T9PX, Ireland
| | - Matthias Vandichel
- Bernal Institute, Department of Chemical Sciences, University of Limerick, Limerick, V94 T9PX, Ireland
| | - Leonard J Barbour
- Department of Chemistry and Polymer Science, Stellenbosch University, Private Bag X1, Matieland, 7602, South Africa
| | - Soumya Mukherjee
- Bernal Institute, Department of Chemical Sciences, University of Limerick, Limerick, V94 T9PX, Ireland
| | - Michael J Zaworotko
- Bernal Institute, Department of Chemical Sciences, University of Limerick, Limerick, V94 T9PX, Ireland
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3
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Sikligar K, Patil RS, Zhang C, Kelley S, Ishtaweera P, Wagle DV, Barnes CL, Baker GA, Atwood JL. Nanotoroids or Coordination Networks: Molecular Constructs at the Mercy of Anions. Inorg Chem 2025; 64:4884-4891. [PMID: 40020083 DOI: 10.1021/acs.inorgchem.4c04755] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/18/2025]
Abstract
Pyrogallol[4]arene (PgC) macrocycles, owing to their preorganized structures, are known to form dimeric (M8L2), hexameric (M24L6), and dodecameric (M24L12) nanocapsules, as well as coordination networks. However, the role of anions in the formation of varied geometries and stoichiometries of PgCs is understudied. In this study, we explore the assembly of pyrogallol[4]arene with strontium iodide, forming metal-organic nanotoroids (M10L8), and with strontium nitrate, which forms coordination networks. Preliminary fluorescence spectroscopy experiments with dyes such as coumarin 153 and Nile red confirm that these nanotoroidal channels can effectively host dye molecules, making them suitable for diverse applications, including drug delivery. Furthermore, the nanotoroids and surface defects of the crystals can serve as a template to grow gold nanosheets.
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Affiliation(s)
- Kanishka Sikligar
- Department of Chemistry, University of Missouri-Columbia, 601 S College Ave., Columbia, Missouri 65211, United States
| | - Rahul S Patil
- Department of Chemistry, University of Missouri-Columbia, 601 S College Ave., Columbia, Missouri 65211, United States
| | - Chen Zhang
- Department of Chemistry, University of Missouri-Columbia, 601 S College Ave., Columbia, Missouri 65211, United States
| | - Steven Kelley
- Department of Chemistry, University of Missouri-Columbia, 601 S College Ave., Columbia, Missouri 65211, United States
| | - Piyuni Ishtaweera
- Department of Chemistry, University of Missouri-Columbia, 601 S College Ave., Columbia, Missouri 65211, United States
| | - Durgesh V Wagle
- Department of Chemistry and Physics, Florida Gulf Coast University, 10501 FGCU Blvd. S., Fort Myers, Florida 33965, United States
| | - Charles L Barnes
- Department of Chemistry, University of Missouri-Columbia, 601 S College Ave., Columbia, Missouri 65211, United States
| | - Gary A Baker
- Department of Chemistry, University of Missouri-Columbia, 601 S College Ave., Columbia, Missouri 65211, United States
| | - Jerry L Atwood
- Department of Chemistry, University of Missouri-Columbia, 601 S College Ave., Columbia, Missouri 65211, United States
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4
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Stamos NA, Kerrigan S, Stiven A, Nichol GS, Bezzu CG, Burt L, Moggach SA, Turner GF, McKeown NB. Porous Molecular Crystals Derived from Cofacial Porphyrin/Phthalocyanine Heterodimers. Angew Chem Int Ed Engl 2025; 64:e202418443. [PMID: 39530334 DOI: 10.1002/anie.202418443] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2024] [Revised: 10/29/2024] [Accepted: 11/12/2024] [Indexed: 11/16/2024]
Abstract
Porphyrin-based porous materials are of growing interest as heterogeneous catalysts especially for reactions that are of importance to sustainability. Here we demonstrate that porous molecular crystals can be prepared by the simple co-crystallisation of tetraphenylporphyrin (TPP) with octa(2',6'-di-iso-propylphenoxy)phthalocyanine or some of its metal complexes [(dipPhO)8PcM; M=H2, Al-OH, Ti=O, Mn-Cl, Fe-Cl, Co, Ni, Cu, Zn, Ga-Cl, Ag, In-Cl or Au-Cl]. This process is facilitated by the efficient formation of the supramolecular heterodimer between TPP and (dipPhO)8PcM, which is driven by the complementary shape and symmetry of the two macrocycles. The (dipPhO)8PcM component directs the crystal structure of the heterodimers to form Phthalocyanine Nanoporous Crystals (PNCs) of similar structure to those formed by (dipPhO)8PcM alone. The incorporation of TPP appears to partially stabilise the PNCs towards the removal of included solvent and for cocrystals containing (dipPhO)8PcCo stability can be enhanced further by the insitu addition of 4,4-bipyridyl to act as a "molecular wall tie". These stabilised PNC/TPP cocrystals have a Brunauer-Emmett-Teller surface area (SABET) of 454 m2 g-1 and a micropore volume (Vmp) of 0.22 mL g-1. The reactivity of both macrocycles within the PNC/TPP co-crystals is demonstrated by insitu metal insertion.
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Affiliation(s)
- Nikolaos-Angelos Stamos
- EaStChem, School of Chemistry, University of Edinburgh, David Brewster Road, Edinburgh, EH9 3FJ, UK
| | - Shannah Kerrigan
- EaStChem, School of Chemistry, University of Edinburgh, David Brewster Road, Edinburgh, EH9 3FJ, UK
| | - Alexander Stiven
- EaStChem, School of Chemistry, University of Edinburgh, David Brewster Road, Edinburgh, EH9 3FJ, UK
| | - Gary S Nichol
- EaStChem, School of Chemistry, University of Edinburgh, David Brewster Road, Edinburgh, EH9 3FJ, UK
| | - C Grazia Bezzu
- EaStChem, School of Chemistry, University of Edinburgh, David Brewster Road, Edinburgh, EH9 3FJ, UK
| | - Luke Burt
- EaStChem, School of Chemistry, University of Edinburgh, David Brewster Road, Edinburgh, EH9 3FJ, UK
| | - Stephen A Moggach
- School of Molecular Sciences, The University of Western Australia, Perth, 6009, Western Australia, Australia
| | - Gemma F Turner
- School of Molecular Sciences, The University of Western Australia, Perth, 6009, Western Australia, Australia
| | - Neil B McKeown
- EaStChem, School of Chemistry, University of Edinburgh, David Brewster Road, Edinburgh, EH9 3FJ, UK
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5
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Meng X, Zou S, Li J, Chen C, Zhang J, Wu M. A Noncovalent π-Stacked Dual-Pore Molecular Crystal for Ethanol/Water and Benzene/Methanol Azeotrope Separation. Angew Chem Int Ed Engl 2025; 64:e202415346. [PMID: 39543080 DOI: 10.1002/anie.202415346] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2024] [Revised: 10/14/2024] [Accepted: 11/12/2024] [Indexed: 11/17/2024]
Abstract
Separation of ethanol/water or benzene/methanol azeotrope mixtures presents significant challenges, not only due to the limitations of conventional distillation techniques but also because of the constraints in developing and utilizing of new generation adsorbents. Porous organic molecular frameworks constructed via noncovalent π-interactions are emerging as novel adsorbents with vast potential in gas adsorption and molecular separation. Herein, we report a permanent two-dimensional porous structure, namely TDTBA-1, which consists of two different kinds of pores through π-stacking of a single organic molecule with highly Td symmetry. Activated TDTBA-1 exhibits excellent hydrophobicity, thermal stability, recoverability and high selectivity for ethanol over water, and benzene over methanol. Therefore, activated TDTBA-1 can be used as an efficient stationary phase for the separation of ethanol/water and benzene/methanol azeotropes by high-resolution gas chromatography.
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Affiliation(s)
- Xiang Meng
- State Key Lab of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, 350002
| | - Shuixiang Zou
- State Key Lab of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, 350002
| | - Jiawei Li
- State Key Lab of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, 350002
| | - Cheng Chen
- State Key Lab of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, 350002
- Fujian Science & Technology Innovation Laboratory for Optoelectronic Information of China, Fuzhou, 350108
| | - Jie Zhang
- MOE Key Laboratory of Cluster Science, Beijing Key Laboratory of Photoelectronic/Electrophotonic Conversion Materials, School of Chemistry and Chemical Engineering, Beijing Institute of Technology, Beijing, 102488, P. R. China
| | - Mingyan Wu
- State Key Lab of Structural Chemistry, Fujian Institute of Research on the Structure of Matter, Chinese Academy of Sciences, Fuzhou, 350002
- Fujian Science & Technology Innovation Laboratory for Optoelectronic Information of China, Fuzhou, 350108
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6
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Carrera M, Such-Basáñez I, Marco-Lozar JP, Bueno-López A, Vilaplana-Ortego E, da Silva I, Bautista D, Fernández-Alarcón A, Calbo J, Ortí E, Curiel D. Rational Design of 7-Azaindole-Based Robust Microporous Hydrogen-Bonded Organic Framework for Gas Sorption. Angew Chem Int Ed Engl 2025; 64:e202412981. [PMID: 39141766 DOI: 10.1002/anie.202412981] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/10/2024] [Revised: 08/08/2024] [Accepted: 08/14/2024] [Indexed: 08/16/2024]
Abstract
7-Azaindole has been integrated as building block with complementary N-H⋅⋅⋅N hydrogen bonding sites for the synthesis of a tetrahedral molecular tecton, namely tetra(α-carbolin-6-yl)methane, TACM. The self-assembly of this molecule results in a 3D hydrogen-bonded organic framework (HOF). This supramolecular structure constitutes a crystalline microporous material with an extraordinary thermal and chemical robustness. Single crystal X-ray diffraction reveals how the five-fold catenation of diamonoid systems, stabilized by hydrogen bonds and π-π interactions, form an interpenetrated network with monodimensional channels. The structural features of the crystalline material are also observed by transmission electron microscopy (TEM). Additionally, the microporosity of the activated TACM-HOF is characterized by gas sorption (N2, CO2, CH4 and H2) experiments performed at different pressures. A selective adsorption is observed for CO2 uptake and TACM-HOF also presents a good adsorption capacity for H2 among supramolecular organic frameworks.
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Affiliation(s)
- Manuel Carrera
- Department of Organic Chemistry-Faculty of Chemistry, University of Murcia, 30100-, Murcia, Spain
| | - Ion Such-Basáñez
- Technical Research Services (SSTTI), University of Alicante Parque Científico, 03690, Sant Vicent del Raspeig, Alicante, Spain
| | - Juan Pablo Marco-Lozar
- Gas to Materials Technologies S. L., c/ El Martillo, 7, 03690, Sant Vicent del Raspeig, Alicante, Spain
| | - Agustín Bueno-López
- Department of Inorganic Chemistry-Faculty of Science, University of Alicante, 03690, Sant Vicent del Raspeig, Alicante, Spain
| | - Eduardo Vilaplana-Ortego
- Department of Inorganic Chemistry-Faculty of Science, University of Alicante, 03690, Sant Vicent del Raspeig, Alicante, Spain
| | - Iván da Silva
- ISIS Neutron and Muon Source, STFC Rutherford Appleton Laboratory, Chilton, Oxfordshire, OX110QX, United Kingdom
| | - Delia Bautista
- Scientific Instrumentation Services, University of Murcia, 30100-, Murcia, Spain
| | - Alberto Fernández-Alarcón
- Institute of Molecular Science, University of Valencia, Catedrático José Beltrán 2, 46980, Paterna, Spain
| | - Joaquín Calbo
- Institute of Molecular Science, University of Valencia, Catedrático José Beltrán 2, 46980, Paterna, Spain
| | - Enrique Ortí
- Institute of Molecular Science, University of Valencia, Catedrático José Beltrán 2, 46980, Paterna, Spain
| | - David Curiel
- Department of Organic Chemistry-Faculty of Chemistry, University of Murcia, 30100-, Murcia, Spain
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7
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Bi H, Shi Y, Wang T, Deng S, Tang BZ, Wei P. Tandem Solid-Solution Phase Post-Synthetic Modification of Porous Molecular Crystals for In-Situ Generation of Fluorophores. Angew Chem Int Ed Engl 2024; 63:e202409211. [PMID: 39122649 DOI: 10.1002/anie.202409211] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/15/2024] [Revised: 07/22/2024] [Accepted: 08/09/2024] [Indexed: 08/12/2024]
Abstract
Conventional synthetic methods of organic luminescent molecules often involve labor-intensive solution-phase organic synthesis, which violate the principles of atom-economic transformation. Post-synthetic modification (PSM) offers a promising alternative, allowing direct transformation from one fluorophore to another. Although PSM is commonly implemented in extended frameworks, its application in porous molecular crystals remains challenging. Herein, we focus on utilizing porous molecular crystals, specifically tetraphenylethylene-cored frameworks, as versatile platforms for tandem PSM reactions to customize organic fluorophores. The tailored skeleton design ensures both the formation of porous structures and the occurrence of tandem solid-solution phase reactions while maintaining the solid state of reactants and products in each step. The inherent non-covalent bonding nature of the frameworks facilitates processing and characterization, offering unparalleled advantages for porous networks. The accompanying solid-state fluorescence transition from green to blue and then to green (or yellow) enables real-time monitoring of tandem reactions and provides intuitive mechanistic insights. This phenomenon is exploited for the facile construction of a dynamic information encryption system using fluorescent quick response codes.
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Affiliation(s)
- Han Bi
- Anhui Graphene Engineering Laboratory, Key Laboratory of Structure and Functional Regulation of Hybrid Materials of Ministry of Education, Institutes of Physical Science and Information Technology, Anhui University, Hefei, 230601, China
| | - Yadong Shi
- Anhui Graphene Engineering Laboratory, Key Laboratory of Structure and Functional Regulation of Hybrid Materials of Ministry of Education, Institutes of Physical Science and Information Technology, Anhui University, Hefei, 230601, China
| | - Tao Wang
- Anhui Graphene Engineering Laboratory, Key Laboratory of Structure and Functional Regulation of Hybrid Materials of Ministry of Education, Institutes of Physical Science and Information Technology, Anhui University, Hefei, 230601, China
| | - Shengyong Deng
- Anhui Graphene Engineering Laboratory, Key Laboratory of Structure and Functional Regulation of Hybrid Materials of Ministry of Education, Institutes of Physical Science and Information Technology, Anhui University, Hefei, 230601, China
| | - Ben Zhong Tang
- School of Science and Engineering, Shenzhen Institute of Aggregate Science and Technology, The Chinese University of Hong Kong, Shenzhen, 518116, China
| | - Peifa Wei
- Anhui Graphene Engineering Laboratory, Key Laboratory of Structure and Functional Regulation of Hybrid Materials of Ministry of Education, Institutes of Physical Science and Information Technology, Anhui University, Hefei, 230601, China
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8
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Sarkar M, Kushwaha V, Boomishankar R. Ligand-Directed Synthesis of a Self-Organized Chloro-Bridged Cubic Pd(II) Cage Showing Selective Encapsulation of Phenols. Angew Chem Int Ed Engl 2024; 63:e202406358. [PMID: 39073222 DOI: 10.1002/anie.202406358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/03/2024] [Revised: 07/26/2024] [Accepted: 07/29/2024] [Indexed: 07/30/2024]
Abstract
The synthesis and guest recognition properties of a neutral Pd24-cubic cage, [{Pd3(NiPr)3PO}8(μ2-Cl)24] 1 are reported. The formation of the cubical assembly takes place by an exclusive one-pot ligand-assisted pathway directed by an oximido linker. The initial coordination of the oximido ligand pre-organizes the [Pd3(NiPr)3PO]3+ polyhedral building units into a tetrameric intermediate, which then transforms into an oximido-tethered tetrahedral assembly and to the cubical cage 1 in the presence of chloride ions. In the absence of the directing oximido linker, no cage formation was observed, and the Pd6-precursor was found to undergo self-condensation, giving rise to a new pentameric polyhedral cluster, [Pd5{(NiPr)3PO}2(OAc)2(OH)2] 2. The central cavity of the cube has been probed for guest encapsulation studies, which shows a high binding with phenolic guest molecules with association constants of the order of 104-105 M-1. The favorable formation of host-guest complexes was attributed to the strong hydrogen bonding interactions between the host and guest functional groups.
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Affiliation(s)
- Meghamala Sarkar
- Department of Chemistry, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune-, 411008, India
| | - Vikash Kushwaha
- Department of Chemistry, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune-, 411008, India
| | - Ramamoorthy Boomishankar
- Department of Chemistry, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune-, 411008, India
- Centre of Energy Science, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune-, 411008, India
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9
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Ono Y, Hirao T, Kawata N, Haino T. Latent porosity of planar tris(phenylisoxazolyl)benzene. Nat Commun 2024; 15:8314. [PMID: 39333129 PMCID: PMC11436937 DOI: 10.1038/s41467-024-52526-9] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2023] [Accepted: 09/11/2024] [Indexed: 09/29/2024] Open
Abstract
Interest in developing separation systems for chemical entities based on crystalline molecules has provided momentum for the fabrication of synthetic porous materials showing selectivity in molecular encapsulation, such as metal-organic frameworks, covalent organic frameworks, hydrogen-bonded organic frameworks, zeolites, and macrocyclic molecular crystals. Among these, macrocyclic molecular crystals have generated renewed interest for use in separation systems. Selective encapsulation relies on the sizes, shapes, and dimensions of the pores present in the macrocyclic cavities; thus, nonmacrocyclic molecular crystals with high selectivity for molecular encapsulation via porosity-without-pore behaviors have not been studied. Here, we report that planar tris(phenylisoxazolyl)benzene forms porous molecular crystals possessing latent pores exhibiting porosity-without-pore behavior. After exposing the crystals to complementary guest molecules, the latent pores encapsulate cis- and trans-decalin while maintaining the structural rigidity responsible for the high selectivity. The encapsulation via porosity without pores is a kinetic process with remarkable selectivity for cis-decalin over trans-decalin with a cis-/trans-ratio of 96:4, which is confirmed by single-crystal X-ray diffraction and powder X-ray diffraction analyses. Hirshfeld surface analysis and fingerprint plots show that the latent intermolecular pores are rigidified by intermolecular dipole‒dipole and π-π stacking interactions, which determines the remarkable selectivity of molecular recognition.
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Affiliation(s)
- Yudai Ono
- Department of Chemistry, Graduate School of Advanced Science and Engineering, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima, Hiroshima, 739-8526, Japan
- International Institute for Sustainability with Knotted Chiral Meta Matter (WPI-SKCM²), Hiroshima University, 2-313 Kagamiyama, Higashi-Hiroshima, Hiroshima, 739-0046, Japan
| | - Takehiro Hirao
- Department of Chemistry, Graduate School of Advanced Science and Engineering, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima, Hiroshima, 739-8526, Japan
| | - Naomi Kawata
- Natural Science Center for Basic Research and Development (N-BARD), Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima, Hiroshima, 739-8526, Japan
| | - Takeharu Haino
- Department of Chemistry, Graduate School of Advanced Science and Engineering, Hiroshima University, 1-3-1 Kagamiyama, Higashi-Hiroshima, Hiroshima, 739-8526, Japan.
- International Institute for Sustainability with Knotted Chiral Meta Matter (WPI-SKCM²), Hiroshima University, 2-313 Kagamiyama, Higashi-Hiroshima, Hiroshima, 739-0046, Japan.
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10
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Xu Z, Yang W, Liu H, Jiang S, Sue ACH. Guest-Induced Conformational Transformations in Tiara[5]arene Crystals: A Pathway for Molecular Sieving. JACS AU 2024; 4:3475-3483. [PMID: 39328758 PMCID: PMC11423331 DOI: 10.1021/jacsau.4c00310] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/05/2024] [Revised: 06/24/2024] [Accepted: 06/25/2024] [Indexed: 09/28/2024]
Abstract
In pursuit of environmental sustainability and energy efficiency, assorted macrocyclic compounds have recently emerged as crystalline adsorbents for the efficient molecular sieving of various chemical commodities. Herein, we delve into the conformational characteristics and solid-state packing modes of tiara[5]arenes (T[5]), a rim-differentiated pillar[5]arene derivative. By meticulously exploring the conformational space, we have successfully identified a multitude of distinct T[5] conformers within a relatively narrow energy range of 22 kJ/mol. This finding underscores the inherent conformational flexibility of this macrocyclic scaffold, enabling T[5] to adapt diverse packing arrangements in the solid state. While solvent-free T[5] crystals do not exhibit permanent porosity, they undergo solvomorphic interconversions when exposed to various guest compounds. Our study demonstrates that T[5]-based crystalline materials exhibit a notable preference for selectively capturing aromatic and olefinic solvents, such as benzene, toluene, chlorobenzene, and cyclohexene, over their aliphatic hydrocarbon counterparts from equivalent volume liquid mixtures, achieving up to 10:1 selectivity between benzene and cyclohexane.
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Affiliation(s)
- Zezhao Xu
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
| | - Weiwei Yang
- Institute for Molecular Design and Synthesis, Tianjin University, Tianjin 300072, China
| | - Huiyu Liu
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
| | - Shan Jiang
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China
| | - Andrew C-H Sue
- College of Chemistry and Chemical Engineering, Xiamen University, Xiamen 361005, China
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11
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Moldovan AA, Maloney AGP. Surface Analysis-From Crystal Structures to Particle Properties. CRYSTAL GROWTH & DESIGN 2024; 24:4160-4169. [PMID: 38766640 PMCID: PMC11099916 DOI: 10.1021/acs.cgd.4c00259] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/22/2024] [Revised: 04/17/2024] [Accepted: 04/18/2024] [Indexed: 05/22/2024]
Abstract
Understanding the surface properties of particles is crucial for optimizing the performance of formulated products in various industries. However, acquiring this understanding often requires expensive trial-and-error studies. Here, we present advanced surface analysis tools that enable the visualization and quantification of chemical and topological information derived from crystallographic data. By employing functional group analysis, roughness calculations, and statistical interaction data, we facilitate direct comparisons of surfaces. We further demonstrate the practicality of our approach by correlating the sticking propensity of distinct ibuprofen morphologies with surface and particle descriptors calculated from a single crystal structure. Our findings support and expand upon previous work, demonstrating that the presence of a carboxylic acid group on the {011} facet leads to significant differences in particle properties and explains the higher electrostatic potential observed in the block-like morphology. While our surface analysis tools are not intended to replace the importance of chemical intuition and expertise, they provide valuable insights for formulators and particle engineers, facilitating informed, data-driven decisions to mitigate formulation risks. This research represents a significant step toward a comprehensive understanding of particle surfaces and their impact on products.
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Affiliation(s)
| | - Andrew G. P. Maloney
- The Cambridge Crystallographic Data
Centre, 12 Union Road, Cambridge CB2 1EZ, U.K.
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12
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Guidetti M, Hilfiker R, Kuentz M, Bauer-Brandl A, Blatter F. Water-mediated phase transformations of posaconazole: An intricate jungle of crystal forms. Eur J Pharm Sci 2024; 195:106722. [PMID: 38336250 DOI: 10.1016/j.ejps.2024.106722] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/16/2023] [Revised: 01/20/2024] [Accepted: 02/06/2024] [Indexed: 02/12/2024]
Abstract
Posaconazole is a broad-spectrum antifungal agent exhibiting rich polymorphism. Up to now, a total of fourteen different crystal forms have been reported, sometimes with an ambiguous nomenclature, but less is known about their properties and stability relationships. Investigating the solid-state of a drug compound is essential to identify the most stable form under working conditions and to prevent the risk of undesired solid-phase transformations under processing and storage. In this paper, we study posaconazole polymorphism by providing a description of its polymorphs, hydrates, and solvates. Powder X-ray diffraction (PXRD), dynamic vapor sorption (DVS), spectroscopic and thermal techniques were employed to characterize the different forms. In addition, the solid-phase transformations of posaconazole in aqueous suspensions were studied by means of Raman microscopy. Surprisingly, we found that Form S, the crystal form contained in the marketed oral suspension, is not the most stable form in water. Form S readily converts to a more stable hydrate, i.e. Form A, after storage in water for two weeks. In the commercial oral formulation the conversion between the two forms is prevented by the presence of polysorbate 80. Such insights into the stabilizing excipient effects beyond particle dispersion are critical to formulators.
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Affiliation(s)
- Matteo Guidetti
- Solvias AG, Solid-State Development Department, Römerpark 2, Kaiseraugst CH- 4303, Switzerland; Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, Odense 5230, Denmark
| | - Rolf Hilfiker
- Solvias AG, Solid-State Development Department, Römerpark 2, Kaiseraugst CH- 4303, Switzerland
| | - Martin Kuentz
- University of Applied Sciences and Arts Northwestern Switzerland, Institute of Pharma Technology, Muttenz CH- 4132, Switzerland
| | - Annette Bauer-Brandl
- Department of Physics, Chemistry and Pharmacy, University of Southern Denmark, Campusvej 55, Odense 5230, Denmark
| | - Fritz Blatter
- Solvias AG, Solid-State Development Department, Römerpark 2, Kaiseraugst CH- 4303, Switzerland.
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13
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Bajpayee N, Pophali S, Vijayakanth T, Nandi S, Desai AV, Kumar V, Jain R, Bera S, Shimon LJW, Misra R. Metal-driven folding and assembly of a minimal β-sheet into a 3D-porous honeycomb framework. Chem Commun (Camb) 2024; 60:2621-2624. [PMID: 38299634 DOI: 10.1039/d3cc05185d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/02/2024]
Abstract
In contrast to short helical peptides, constrained peptides, and foldamers, the design and fabrication of crystalline 3D frameworks from the β-sheet peptides are rare because of their high self-aggregation propensity to form 1D architectures. Herein, we demonstrate the formation of a 3D porous honeycomb framework through the silver coordination of a minimal β-sheet forming a peptide having terminal metal coordinated 4- and 3-pyridyl ligands.
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Affiliation(s)
- Nikhil Bajpayee
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), S.A.S. Nagar (Mohali), Mohali, 160062, India.
| | - Salil Pophali
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), S.A.S. Nagar (Mohali), Mohali, 160062, India.
| | - Thangavel Vijayakanth
- The Shmunis School of Biomedicine and Cancer Research, George S. Wise Faculty of Life Sciences, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Shyamapada Nandi
- Chemistry Division, School of Advanced Sciences, Vellore Institute of Technology, Chennai, 600127, India
| | - Aamod V Desai
- School of Chemistry, University of St Andrews, North Haugh, St Andrews KY16 9ST, UK
| | - Vinod Kumar
- Department of Pharmacology and Toxicology, National Institute of Pharmaceutical Education and Research, Sector 67, S. A. S. Nagar, Punjab 160 062, India
| | - Rahul Jain
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), S.A.S. Nagar (Mohali), Mohali, 160062, India.
| | - Santu Bera
- Department of Chemistry, Ashoka University, Sonipat, Haryana 131029, India
| | - Linda J W Shimon
- Department of Chemical Research Support, The Weizmann Institute of Science, Rehovot, 7610001, Israel.
| | - Rajkumar Misra
- Department of Medicinal Chemistry, National Institute of Pharmaceutical Education and Research (NIPER), S.A.S. Nagar (Mohali), Mohali, 160062, India.
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14
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Xu Z, Ye Y, Liu Y, Liu H, Jiang S. Design and assembly of porous organic cages. Chem Commun (Camb) 2024; 60:2261-2282. [PMID: 38318641 DOI: 10.1039/d3cc05091b] [Citation(s) in RCA: 9] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2024]
Abstract
Porous organic cages (POCs) represent a notable category of porous materials, showing remarkable material properties due to their inherent porosity. Unlike extended frameworks which are constructed by strong covalent or coordination bonds, POCs are composed of discrete molecular units held together by weak intermolecular forces. Their structure and chemical traits can be systematically tailored, making them suitable for a range of applications including gas storage and separation, molecular separation and recognition, catalysis, and proton and ion conduction. This review provides a comprehensive overview of POCs, covering their synthesis methods, structure and properties, computational approaches, and applications, serving as a primer for those who are new to the domain. A special emphasis is placed on the growing role of computational methods, highlighting how advanced data-driven techniques and automation are increasingly aiding the rapid exploration and understanding of POCs. We conclude by addressing the prevailing challenges and future prospects in the field.
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Affiliation(s)
- Zezhao Xu
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.
| | - Yangzhi Ye
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.
| | - Yilan Liu
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.
| | - Huiyu Liu
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.
| | - Shan Jiang
- School of Physical Science and Technology, ShanghaiTech University, Shanghai 201210, China.
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15
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Eckstein BJ, Martin HR, Moghadasnia MP, Halder A, Melville MJ, Buzinski TN, Balaich GJ, McGuirk CM. Influence of donor point modifications on the assembly of chalcogen-bonded organic frameworks. Chem Commun (Camb) 2024; 60:758-761. [PMID: 38126447 DOI: 10.1039/d3cc05162e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2023]
Abstract
Incremental, single-atom substitutions of Se-based chalcogen bond (Ch-bond) donors with stronger donating Te centers were implemented in two new triptycene tris(1,2,5-chalcogenadiazole) tectons. The appreciably more favorable Ch-bonding ability of the Te-based donors promotes assembly of low-density networks and more stable Ch-bonded organic frameworks (ChOFs).
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Affiliation(s)
- Brian J Eckstein
- Department of Chemistry, Colorado School of Mines, Golden, Colorado, 80401, USA.
| | - Hannah R Martin
- Department of Chemistry, Colorado School of Mines, Golden, Colorado, 80401, USA.
| | | | - Arijit Halder
- Department of Chemistry, Colorado School of Mines, Golden, Colorado, 80401, USA.
| | - Michael J Melville
- Department of Chemistry, Colorado School of Mines, Golden, Colorado, 80401, USA.
| | - Tara N Buzinski
- Department of Chemistry, Colorado School of Mines, Golden, Colorado, 80401, USA.
| | - Gary J Balaich
- Department of Chemistry & Chemistry Research Center, Laboratories for Advanced Materials, United States Airforce Academy, Colorado Springs, Colorado, 80840, USA
| | - C Michael McGuirk
- Department of Chemistry, Colorado School of Mines, Golden, Colorado, 80401, USA.
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16
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Rahmani M, Matos CMO, Wang SQ, Bezrukov AA, Eaby AC, Sensharma D, Hjiej-Andaloussi Y, Vandichel M, Zaworotko MJ. Highly Selective p-Xylene Separation from Mixtures of C8 Aromatics by a Nonporous Molecular Apohost. J Am Chem Soc 2023; 145:27316-27324. [PMID: 38055597 PMCID: PMC10739993 DOI: 10.1021/jacs.3c07198] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Revised: 11/18/2023] [Accepted: 11/20/2023] [Indexed: 12/08/2023]
Abstract
High and increasing production of separation of C8 aromatic isomers demands the development of purification methods that are efficient, scalable, and inexpensive, especially for p-xylene, PX, the largest volume C8 commodity. Herein, we report that 4-(1H-1,2,4-triazol-1-yl)-phenyl-1H-benzo[de]isoquinoline-1,3(2H)-dione (TPBD), a molecular compound that can be prepared and scaled up via solid-state synthesis, exhibits exceptional PX selectivity over each of the other C8 isomers, o-xylene (OX), m-xylene (MX), and ethylbenzene (EB). The apohost or α form of TPBD was found to exhibit conformational polymorphism in the solid state enabled by rotation of its triazole and benzene rings. TPBD-αI and TPBD-αII are nonporous polymorphs that transformed to the same PX inclusion compound, TPBD-PX, upon contact with liquid PX. TPBD enabled highly selective capture of PX, as established by competitive slurry experiments involving various molar ratios in binary, ternary, and quaternary mixtures of C8 aromatics. Binary selectivity values for PX as determined by 1H NMR spectroscopy and gas chromatography ranged from 22.4 to 108.4, setting new benchmarks for both PX/MX (70.3) and PX/EB (59.9) selectivity as well as close to benchmark selectivity for PX/OX (108.4). To our knowledge, TPBD is the first material of any class to exhibit such high across-the-board PX selectivity from quaternary mixtures of C8 aromatics under ambient conditions. Crystallographic and computational studies provide structural insight into the PX binding site in TPBD-PX, whereas thermal stability and capture kinetics were determined by variable-temperature powder X-ray diffraction and slurry tests, respectively. That TPBD offers benchmark PX selectivity and facile recyclability makes it a prototypal molecular compound for PX purification or capture under ambient conditions.
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Affiliation(s)
- Maryam Rahmani
- Bernal
Institute, Department of Chemical Sciences, University of Limerick, Limerick V94 T9PX, Republic
of Ireland
| | - Catiúcia
R. M. O. Matos
- Bernal
Institute, Department of Chemical Sciences, University of Limerick, Limerick V94 T9PX, Republic
of Ireland
| | - Shi-Qiang Wang
- Institute
of Materials Research and Engineering (IMRE), Agency for Science,
Technology and Research (A*STAR), 2 Fusionopolis Way, 138634 Singapore
| | - Andrey A. Bezrukov
- Bernal
Institute, Department of Chemical Sciences, University of Limerick, Limerick V94 T9PX, Republic
of Ireland
| | - Alan C. Eaby
- Bernal
Institute, Department of Chemical Sciences, University of Limerick, Limerick V94 T9PX, Republic
of Ireland
| | - Debobroto Sensharma
- Bernal
Institute, Department of Chemical Sciences, University of Limerick, Limerick V94 T9PX, Republic
of Ireland
| | - Yassin Hjiej-Andaloussi
- Bernal
Institute, Department of Chemical Sciences, University of Limerick, Limerick V94 T9PX, Republic
of Ireland
| | - Matthias Vandichel
- Bernal
Institute, Department of Chemical Sciences, University of Limerick, Limerick V94 T9PX, Republic
of Ireland
| | - Michael J. Zaworotko
- Bernal
Institute, Department of Chemical Sciences, University of Limerick, Limerick V94 T9PX, Republic
of Ireland
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17
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Pedrini A, Marchetti D, Pinalli R, Massera C. Stimuli-Responsive, Dynamic Supramolecular Organic Frameworks. Chempluschem 2023; 88:e202300383. [PMID: 37675865 DOI: 10.1002/cplu.202300383] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/24/2023] [Revised: 09/04/2023] [Accepted: 09/04/2023] [Indexed: 09/08/2023]
Abstract
Supramolecular organic frameworks (SOFs) are a class of three-dimensional, potentially porous materials obtained by the self-assembly of organic building blocks held together by weak interactions such as hydrogen bonds, halogen bonds, π⋅⋅⋅π stacking and dispersion forces. SOFs are being extensively studied for their potential applications in gas storage and separation, catalysis, guest encapsulation and sensing. The supramolecular forces that guide their self-assembly endow them with an attractive combination of crystallinity and flexibility, providing intelligent dynamic materials that can respond to external stimuli in a reversible way. The present review article will focus on SOFs showing dynamic behaviour when exposed to different stimuli, highlighting fundamental aspects such as the combination of tectons and supramolecular interactions involved in the framework formation, structure-property relationship and their potential applications.
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Affiliation(s)
- Alessandro Pedrini
- Department of Chemistry, Life Sciences and Environmental Sustainability and INSTM UdR Parma, University of Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Danilo Marchetti
- Department of Chemistry, Life Sciences and Environmental Sustainability and INSTM UdR Parma, University of Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
- Center for Materials Interfaces, Electron Crystallography, Istituto Italiano di Tecnologia, Viale Rinaldo Piaggio 34, 56025, Pontedera, Italy
| | - Roberta Pinalli
- Department of Chemistry, Life Sciences and Environmental Sustainability and INSTM UdR Parma, University of Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
| | - Chiara Massera
- Department of Chemistry, Life Sciences and Environmental Sustainability and INSTM UdR Parma, University of Parma, Parco Area delle Scienze 17/A, 43124, Parma, Italy
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18
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Kim J, Hong J, Park MJ, Lee HS. Tailoring Enantiomeric Chiral Channels in Metal-Peptide Networks: A Novel Foldamer-Based Approach for Host-Guest Interactions. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2023; 35:e2305753. [PMID: 37722669 DOI: 10.1002/adma.202305753] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/15/2023] [Revised: 08/13/2023] [Indexed: 09/20/2023]
Abstract
Designing chiral channels in organic frameworks presents an ongoing challenge due to the intricate control of size, shape, and functionality required. A novel approach is presented, which crafts enantiomeric chiral channels in metal-peptide networks (MPNs) by integrating short foldamer ligands with CuI clusters. The MPN structure serves as a 3D blueprint for host-guest chemistry, fostering modular substitution to refine chiral channel properties at the atomic scale. Incorporating hydrogen bond networks augments guest molecule interactions with the channel surface. This approach expedites enantiomer discrimination in racemic mixtures and incites adaptable guest molecules to take on specific axially chiral conformations. Distinct from traditional metal-organic frameworks (MOFs) and conventional reticular architectures, this foldamer-based methodology provides a predictable and customizable host-guest interaction system within a 3D topology. This innovation sets the stage for multifunctional materials that merge host-guest interaction systems with metal-complex properties, opening up potential applications in catalysis, sensing, and drug delivery.
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Affiliation(s)
- Jaewook Kim
- Department of Chemistry and Center for Multiscale Chiral Architectures (CMCA), KAIST, Daejeon, 34141, Republic of Korea
| | - Jungwoo Hong
- Department of Chemistry and Center for Multiscale Chiral Architectures (CMCA), KAIST, Daejeon, 34141, Republic of Korea
| | - Mi Jeong Park
- Department of Chemistry and Center for Multiscale Chiral Architectures (CMCA), KAIST, Daejeon, 34141, Republic of Korea
| | - Hee-Seung Lee
- Department of Chemistry and Center for Multiscale Chiral Architectures (CMCA), KAIST, Daejeon, 34141, Republic of Korea
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19
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Jose C, Sarkar M, Rajasekar P, Tewari T, Boomishankar R. Squarate-Tethered Enantiomeric Imido-Pd(II) Cages for Recognition and Separation of Chiral Organic Molecules. Inorg Chem 2023; 62:19375-19381. [PMID: 37939248 DOI: 10.1021/acs.inorgchem.3c03105] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2023]
Abstract
Chiral coordination cages have emerged as an efficient platform for enantioselective processes via host-guest interactions. Here, we report an enantiomeric pair of tetrahedral cages of formula [(Pd3[PO(N(*CH(CH3)Ph)3])4(C4O4)6] supported by chiral tris(imido)phosphate trianions and squarate (C4O4)2- linkers. These cages exhibit unusual coordination isomerism for Pd(II)-linker bonds compared with the other Pd(II) cages of this family. Further, they were employed for the recognition and separation of small chiral molecules containing various functionalities. High enantioselectivities of 67 and 41 were found in the case of R-4-hydroxydihydrofuran-2(3H)-one and S-epichlorohydrin, recognized by the R-isomer of the cage. Chiral separation studies showed remarkable enantiomeric excess values of 93 and 85% for S-epichlorohydrin and R-4-benzyl-2-oxazolidinone, respectively, from their racemic mixtures. These studies showcase the potential of coordination cages for enantioselective applications.
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Affiliation(s)
- Cavya Jose
- Department of Chemistry, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune 411008, India
| | - Meghamala Sarkar
- Department of Chemistry, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune 411008, India
| | - Prabhakaran Rajasekar
- Department of Chemistry, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune 411008, India
| | - Tanuja Tewari
- Polymer Science and Engineering Division, CSIR-National Chemical Laboratory and Academy of Scientific and Innovative Research (AcSIR), Dr. Homi Bhabha Road, Pune 411008, India
| | - Ramamoorthy Boomishankar
- Department of Chemistry, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune 411008, India
- Centre of Energy Science, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune 411008, India
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20
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Gunaga SS, Bryce DL. Modulation of Rotational Dynamics in Halogen-Bonded Cocrystalline Solids. J Am Chem Soc 2023; 145:19005-19017. [PMID: 37586107 DOI: 10.1021/jacs.3c06343] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/18/2023]
Abstract
Dynamic processes are responsible for the functionality of a range of materials, biomolecules, and catalysts. We report a detailed systematic study of the modulation of methyl rotational dynamics via the direct and the indirect influence of noncovalent halogen bonds. For this purpose, a novel series of cocrystalline architectures featuring halogen bonds (XB) to tetramethylpyrazine (TMP) is designed and prepared using gas-phase, solution, and solid-state mechanochemical methods. Single-crystal X-ray diffraction reveals the capacity of molecular bromine as well as weak chloro-XB donors to act as robust directional structure-directing elements. Methyl rotational barriers (Ea) measured using variable-temperature deuterium solid-state NMR range from 3.75 ± 0.04 kJ mol-1 in 1,3,5-trichloro-2,4,6-trifluorobenzene·TMP to 7.08 ± 0.15 kJ mol-1 in 1,4-dichlorotetrafluorobenzene·TMP. Ea data for a larger series of TMP cocrystals featuring chloro-, bromo-, and iodo-XB donors are shown to be governed by a combination of steric and electronic factors. The average number of carbon-carbon close contacts to the methyl group is found to be a key steric metric capable of rationalizing the observed trends within each of the Cl, Br, and I series. Differences between each series are accounted for by considering the strength of the σ-hole on the XB donor. One possible route to modulating dynamics is therefore via designer cocrystals of variable stoichiometry, maintaining the core chemical features of interest between a given donor and acceptor while simultaneously modifying the number of carbon close contacts affecting dynamics. These principles may provide design opportunities to modulate more complex geared or cascade dynamics involving larger functional groups.
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Affiliation(s)
- Shubha S Gunaga
- Department of Chemistry and Biomolecular Sciences, Centre for Catalysis Research and Innovation, and Nexus for Quantum Technologies, University of Ottawa, 10 Marie Curie Private, Ottawa, Ontario K1N 6N5 Canada
| | - David L Bryce
- Department of Chemistry and Biomolecular Sciences, Centre for Catalysis Research and Innovation, and Nexus for Quantum Technologies, University of Ottawa, 10 Marie Curie Private, Ottawa, Ontario K1N 6N5 Canada
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21
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Nikolayenko VI, Castell DC, Sensharma D, Shivanna M, Loots L, Otake KI, Kitagawa S, Barbour LJ, Zaworotko MJ. Metal cation substitution can tune CO 2, H 2O and CH 4 switching pressure in transiently porous coordination networks. JOURNAL OF MATERIALS CHEMISTRY. A 2023; 11:16019-16026. [PMID: 38013758 PMCID: PMC10394667 DOI: 10.1039/d3ta03300g] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 06/04/2023] [Accepted: 07/17/2023] [Indexed: 11/29/2023]
Abstract
Compared to rigid physisorbents, switching coordination networks that reversibly transform between closed (non-porous) and open (porous) phases offer promise for gas/vapour storage and separation owing to their improved working capacity and desirable thermal management properties. We recently introduced a coordination network, X-dmp-1-Co, which exhibits switching enabled by transient porosity. The resulting "open" phases are generated at threshold pressures even though they are conventionally non-porous. Herein, we report that X-dmp-1-Co is the parent member of a family of transiently porous coordination networks [X-dmp-1-M] (M = Co, Zn and Cd) and that each exhibits transient porosity but switching events occur at different threshold pressures for CO2 (0.8, 2.1 and 15 mbar, for Co, Zn and Cd, respectively, at 195 K), H2O (10, 70 and 75% RH, for Co, Zn and Cd, respectively, at 300 K) and CH4 (<2, 10 and 25 bar, for Co, Zn and Cd, respectively, at 298 K). Insight into the phase changes is provided through in situ SCXRD and in situ PXRD. We attribute the tuning of gate-opening pressure to differences and changes in the metal coordination spheres and how they impact dpt ligand rotation. X-dmp-1-Zn and X-dmp-1-Cd join a small number of coordination networks (<10) that exhibit reversible switching for CH4 between 5 and 35 bar, a key requirement for adsorbed natural gas storage.
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Affiliation(s)
- Varvara I Nikolayenko
- Department of Chemical Sciences, Bernal Institute, University of Limerick Limerick V94T9PX Republic of Ireland
| | - Dominic C Castell
- Department of Chemical Sciences, Bernal Institute, University of Limerick Limerick V94T9PX Republic of Ireland
| | - Debobroto Sensharma
- Department of Chemical Sciences, Bernal Institute, University of Limerick Limerick V94T9PX Republic of Ireland
| | - Mohana Shivanna
- Institute for Integrated Cell-Material Sciences (iCeMS), Institute for Advanced Study, Kyoto University (KUIAS) Yoshida Ushinomiyacho, Sakyoku Kyoto 606-8501 Japan
| | - Leigh Loots
- Department of Chemistry and Polymer Science, University of Stellenbosch Matieland 7600 South Africa
| | - Ken-Ichi Otake
- Institute for Integrated Cell-Material Sciences (iCeMS), Institute for Advanced Study, Kyoto University (KUIAS) Yoshida Ushinomiyacho, Sakyoku Kyoto 606-8501 Japan
| | - Susumu Kitagawa
- Institute for Integrated Cell-Material Sciences (iCeMS), Institute for Advanced Study, Kyoto University (KUIAS) Yoshida Ushinomiyacho, Sakyoku Kyoto 606-8501 Japan
| | - Leonard J Barbour
- Department of Chemistry and Polymer Science, University of Stellenbosch Matieland 7600 South Africa
| | - Michael J Zaworotko
- Department of Chemical Sciences, Bernal Institute, University of Limerick Limerick V94T9PX Republic of Ireland
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22
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Hu X, Han M, Wang L, Shao L, Peeyush Y, Du J, Kelley SP, Dalgarno SJ, Atwood DA, Feng S, Atwood JL. A copper-seamed coordination nanocapsule as a semiconductor photocatalyst for molecular oxygen activation. Chem Sci 2023; 14:4532-4537. [PMID: 37152257 PMCID: PMC10155914 DOI: 10.1039/d3sc00318c] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/18/2023] [Accepted: 03/07/2023] [Indexed: 05/09/2023] Open
Abstract
Here we report that a Cu2+-seamed coordination nanocapsule can serve as an efficient semiconductor photocatalyst for molecular oxygen activation. This capsule was constructed through a redox reaction facilitated self-assembly of cuprous bromide and C-pentyl-pyrogallol[4]arene. Photophysical and electrochemical studies revealed its strong visible-light absorption and photocurrent polarity switching effect. This novel molecular solid material is capable of activating molecular oxygen into reactive oxygen species under simulated sunlight irradiation. The oxygen activation process has been exploited for catalyzing aerobic oxidation reactions. The present work provides new insights into designing nonporous discrete metal-organic supramolecular assemblies for solar-driven molecular oxygen activation.
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Affiliation(s)
- Xiangquan Hu
- Department of Chemistry, University of Missouri-Columbia 601 S College Ave Columbia MO 65211 USA
| | - Meirong Han
- Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Molecular Science, Shanxi University Taiyuan 030006 P. R. China
| | - Leicheng Wang
- Institute for Advanced Interdisciplinary Research, University of Jinan Jinan 250022 P. R. China
| | - Li Shao
- Department of Chemistry, University of Missouri-Columbia 601 S College Ave Columbia MO 65211 USA
| | - Yadav Peeyush
- Department of Chemistry, University of Missouri-Columbia 601 S College Ave Columbia MO 65211 USA
| | - Jialei Du
- Institute for Advanced Interdisciplinary Research, University of Jinan Jinan 250022 P. R. China
| | - Steven P Kelley
- Department of Chemistry, University of Missouri-Columbia 601 S College Ave Columbia MO 65211 USA
| | - Scott J Dalgarno
- Institute of Chemical Sciences, Heriot-Watt University Riccarton Edinburgh EH14 4AS UK
| | - David A Atwood
- Department of Chemistry, University of Kentucky Lexington KY 40506 USA
| | - Sisi Feng
- Key Laboratory of Chemical Biology and Molecular Engineering of Ministry of Education, Institute of Molecular Science, Shanxi University Taiyuan 030006 P. R. China
| | - Jerry L Atwood
- Department of Chemistry, University of Missouri-Columbia 601 S College Ave Columbia MO 65211 USA
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23
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Martí-Rujas J, Elli S, Famulari A. Kinetic trapping of 2,4,6-tris(4-pyridyl)benzene and ZnI 2 into M 12L 8 poly-[n]-catenanes using solution and solid-state processes. Sci Rep 2023; 13:5605. [PMID: 37019947 PMCID: PMC10076325 DOI: 10.1038/s41598-023-32661-x] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/31/2022] [Accepted: 03/30/2023] [Indexed: 04/07/2023] Open
Abstract
Here, we show that in a supramolecular system with more than 20 building blocks forming large icosahedral M12L8 metal-organic cages (MOCs), using the instant synthesis method, it is possible to kinetically trap and control the formation of interlocking M12L8 nanocages, giving rare M12L8 TPB-ZnI2 poly-[n]-catenane. The catenanes are obtained in a one-pot reaction, selectively as amorphous (a1) or crystalline states, as demonstrated by powder X-ray diffraction (powder XRD), thermogravimetric (TG) analysis and 1H NMR. The 300 K M12L8 poly-[n]-catenane single crystal X-ray diffraction (SC-XRD) structure including nitrobenzene (1) indicates strong guest binding with the large M12L8 cage (i.e., internal volume ca. 2600 Å3), allowing its structural resolution. Conversely, slow self-assembly (5 days) leads to a mixture of the M12L8 poly-[n]-catenane and a new TPB-ZnI2 (2) coordination polymer (i.e., thermodynamic product), as revealed by SC-XRD. The neat grinding solid-state synthesis also yields amorphous M12L8 poly-[n]-catenane (a1'), but not coordination polymers, selectively in 15 min. The dynamic behavior of the M12L8 poly-[n]-catenanes demonstrated by the amorphous-to-crystalline transformation upon the uptake of ortho-, meta- and para-xylenes shows the potential of M12L8 poly-[n]-catenanes as functional materials in molecular separation. Finally, combining SC-XRD of 1 and DFT calculations specific for the solid-state, the role of the guests in the stability of the 1D chains of M12L8 nanocages is reported. Energy interactions such as interaction energies (E), lattice energies (E*), host-guest energies (Ehost-guest) and guest-guest energies (Eguest-guest) were analysed considering the X-ray structure with and without the nitrobenzene guest. Not only the synthetic control achieved in the synthesis of the M12L8 MOCs but also their dynamic behavior either in the crystalline or amorphous phase are sufficient to raise scientific interest in areas ranging from fundamental to applied sides of chemistry and material sciences.
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Affiliation(s)
- Javier Martí-Rujas
- Dipartimento di Chimica Materiali e Ingegneria Chimica, ''Giulio Natta'', Politecnico di Milano, Via L. Mancinelli 7, 20131, Milan, Italy.
- Center for Nano Science and Technology@Polimi, Istituto Italiano di Tecnologia, Via Pascoli 70/3, 20133, Milan, Italy.
| | - Stefano Elli
- Dipartimento di Chimica Materiali e Ingegneria Chimica, ''Giulio Natta'', Politecnico di Milano, Via L. Mancinelli 7, 20131, Milan, Italy
| | - Antonino Famulari
- Dipartimento di Chimica Materiali e Ingegneria Chimica, ''Giulio Natta'', Politecnico di Milano, Via L. Mancinelli 7, 20131, Milan, Italy
- INSTM, Consorzio Interuniversitario Nazionale per la Scienza e Tecnologia dei Materiali, Florence, Italy
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24
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Andrews J, Yufit DS, McCabe JF, Fox MA, Steed JW. Vapor Sorption and Halogen-Bond-Induced Solid-Form Rearrangement of a Porous Pharmaceutical. CRYSTAL GROWTH & DESIGN 2023; 23:2628-2633. [PMID: 37038401 PMCID: PMC10080649 DOI: 10.1021/acs.cgd.2c01464] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/09/2022] [Revised: 02/08/2023] [Indexed: 06/19/2023]
Abstract
A porous, nonsolvated polymorph of the voltage-gated sodium channel blocker mexiletine hydrochloride absorbs iodine vapor to give a pharmaceutical cocrystal incorporating an I2Cl- anion that forms a halogen-π interaction with the mexiletine cations. The most thermodynamically stable form of the compound does not absorb iodine. This example shows that vapor sorption is a potentially useful and underused tool for bringing about changes in pharmaceutical solid form as part of a solid form screening protocol.
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Affiliation(s)
- Jessica
L. Andrews
- Department
of Chemistry, Durham University, South Road, Durham DH1 3LE, U.K.
| | - Dmitry S. Yufit
- Department
of Chemistry, Durham University, South Road, Durham DH1 3LE, U.K.
| | - James F. McCabe
- Pharmaceutical
Sciences, R&D, AstraZeneca, Charter Way, Silk Road Business
Park, Macclesfield SK10
2NA, U.K.
| | - Mark A. Fox
- Department
of Chemistry, Durham University, South Road, Durham DH1 3LE, U.K.
| | - Jonathan W. Steed
- Department
of Chemistry, Durham University, South Road, Durham DH1 3LE, U.K.
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25
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Nikolayenko VI, Castell DC, Sensharma D, Shivanna M, Loots L, Forrest KA, Solanilla-Salinas CJ, Otake KI, Kitagawa S, Barbour LJ, Space B, Zaworotko MJ. Reversible transformations between the non-porous phases of a flexible coordination network enabled by transient porosity. Nat Chem 2023; 15:542-549. [PMID: 36781909 PMCID: PMC10070188 DOI: 10.1038/s41557-022-01128-3] [Citation(s) in RCA: 32] [Impact Index Per Article: 16.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2021] [Accepted: 12/15/2022] [Indexed: 02/15/2023]
Abstract
Flexible metal-organic materials that exhibit stimulus-responsive switching between closed (non-porous) and open (porous) structures induced by gas molecules are of potential utility in gas storage and separation. Such behaviour is currently limited to a few dozen physisorbents that typically switch through a breathing mechanism requiring structural contortions. Here we show a clathrate (non-porous) coordination network that undergoes gas-induced switching between multiple non-porous phases through transient porosity, which involves the diffusion of guests between discrete voids through intra-network distortions. This material is synthesized as a clathrate phase with solvent-filled cavities; evacuation affords a single-crystal to single-crystal transformation to a phase with smaller cavities. At 298 K, carbon dioxide, acetylene, ethylene and ethane induce reversible switching between guest-free and gas-loaded clathrate phases. For carbon dioxide and acetylene at cryogenic temperatures, phases showing progressively higher loadings were observed and characterized using in situ X-ray diffraction, and the mechanism of diffusion was computationally elucidated.
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Affiliation(s)
- Varvara I Nikolayenko
- Department of Chemical Sciences, University of Limerick, Limerick, Republic of Ireland
- Bernal Institute, University of Limerick, Limerick, Republic of Ireland
| | - Dominic C Castell
- Department of Chemical Sciences, University of Limerick, Limerick, Republic of Ireland
- Bernal Institute, University of Limerick, Limerick, Republic of Ireland
| | - Debobroto Sensharma
- Department of Chemical Sciences, University of Limerick, Limerick, Republic of Ireland
- Bernal Institute, University of Limerick, Limerick, Republic of Ireland
| | - Mohana Shivanna
- Institute for Integrated Cell-Material Sciences (iCeMS), Kyoto University Institute for Advanced Study (KUIAS), Kyoto University, Kyoto, Japan
| | - Leigh Loots
- Department of Chemistry and Polymer Science, Stellenbosch University, Stellenbosch, South Africa
| | | | | | - Ken-Ichi Otake
- Institute for Integrated Cell-Material Sciences (iCeMS), Kyoto University Institute for Advanced Study (KUIAS), Kyoto University, Kyoto, Japan
| | - Susumu Kitagawa
- Institute for Integrated Cell-Material Sciences (iCeMS), Kyoto University Institute for Advanced Study (KUIAS), Kyoto University, Kyoto, Japan
| | - Leonard J Barbour
- Department of Chemistry and Polymer Science, Stellenbosch University, Stellenbosch, South Africa
| | - Brian Space
- Department of Chemistry, University of South Florida, Tampa, FL, USA
- Department of Chemistry, North Carolina State University, Raleigh, NC, USA
| | - Michael J Zaworotko
- Department of Chemical Sciences, University of Limerick, Limerick, Republic of Ireland.
- Bernal Institute, University of Limerick, Limerick, Republic of Ireland.
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26
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Eaby AC, Myburgh DC, Kosimov A, Kwit M, Esterhuysen C, Janiak AM, Barbour LJ. Dehydration of a crystal hydrate at subglacial temperatures. Nature 2023; 616:288-292. [PMID: 37045922 PMCID: PMC10097597 DOI: 10.1038/s41586-023-05749-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/04/2022] [Accepted: 01/23/2023] [Indexed: 04/14/2023]
Abstract
Water is one of the most important substances on our planet1. It is ubiquitous in its solid, liquid and vaporous states and all known biological systems depend on its unique chemical and physical properties. Moreover, many materials exist as water adducts, chief among which are crystal hydrates (a specific class of inclusion compound), which usually retain water indefinitely at subambient temperatures2. We describe a porous organic crystal that readily and reversibly adsorbs water into 1-nm-wide channels at more than 55% relative humidity. The water uptake/release is chromogenic, thus providing a convenient visual indication of the hydration state of the crystal over a wide temperature range. The complementary techniques of X-ray diffraction, optical microscopy, differential scanning calorimetry and molecular simulations were used to establish that the nanoconfined water is in a state of flux above -70 °C, thus allowing low-temperature dehydration to occur. We were able to determine the kinetics of dehydration over a wide temperature range, including well below 0 °C which, owing to the presence of atmospheric moisture, is usually challenging to accomplish. This discovery unlocks opportunities for designing materials that capture/release water over a range of temperatures that extend well below the freezing point of bulk water.
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Affiliation(s)
- Alan C Eaby
- Department of Chemistry and Polymer Science, Stellenbosch University, Stellenbosch, South Africa
| | - Dirkie C Myburgh
- Department of Chemistry and Polymer Science, Stellenbosch University, Stellenbosch, South Africa
| | - Akmal Kosimov
- Faculty of Chemistry, Adam Mickiewicz University, Poznań, Poland
| | - Marcin Kwit
- Faculty of Chemistry, Adam Mickiewicz University, Poznań, Poland
| | - Catharine Esterhuysen
- Department of Chemistry and Polymer Science, Stellenbosch University, Stellenbosch, South Africa.
| | | | - Leonard J Barbour
- Department of Chemistry and Polymer Science, Stellenbosch University, Stellenbosch, South Africa.
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27
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Sarkar M, Boomishankar R. Mapping the Assembly of Neutral Tetrahedral Cages Tethered by Oximido Linkers and Their Guest Encapsulation Studies. Inorg Chem 2023; 62:1855-1863. [PMID: 35623320 DOI: 10.1021/acs.inorgchem.2c01178] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]
Abstract
A primary criterion for the design of polyhedral metal-organic cages is the requirement of geometrically matched pairs of metal ions and ligand moieties. However, understanding the pathway it takes to reach the final polyhedral structure can provide more insights into the self-assembly process and improved design strategies. In this regard, we report two neutral tetrahedral cages with the formulas {[Pd3(NiPr)3PO]4(L1)6} (1-TD) and {[Pd3(NiPr)3PO]4(L2)6} (2-TD) starting from the acetate-bridged cluster {[Pd3(NiPr)3PO]2(OAc)2(OH)}2·2(CH3)2SO (HEXA-Pd) and the respective oxamide precursors (L1H2: [C2(NH2)2O2]) and (L2H2: (C2(NHMe)2O2]). When subtle variations in the reaction conditions were made, two new tetrameric Pd12 assemblies, {[Pd3(NiPr)3PO]4(L1)2(OAc)4(OMe)4} (1-TM) and {[Pd3(NiPr)3PO]4(L2)2(OAc)4(OMe)4} (2-TM), were obtained from the same precursors. Detailed investigations using NMR, mass spectrometry, X-ray crystallography, and computational studies indicate that the macrocyclic complexes 1-TM and 2-TM are the reaction intermediates involved in the formation of the tetrahedral cages 1-TD and 2-TD, respectively. Moreover, the tetrahedral cages 1-TD and 2-TD exhibited intrinsic cavities of volume ∼85 Å3. Guest encapsulation studies revealed that the cage 1-TD can encapsulate a wide range of guest molecules such as CH2Cl2, CHCl3, CCl4, C6H6, and C6H5F. Interestingly, 1-TD was shown to exhibit a preferential binding of C6H5F and C6H6 over other halogenated guest molecules, as determined from NMR titrations and computational studies.
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Affiliation(s)
- Meghamala Sarkar
- Department of Chemistry, Indian Institute of Science Education and Research (IISER), Pune, Dr. Homi Bhabha Road, Pune 411008, India
| | - Ramamoorthy Boomishankar
- Department of Chemistry, Indian Institute of Science Education and Research (IISER), Pune, Dr. Homi Bhabha Road, Pune 411008, India.,Centre for Energy Science, Indian Institute of Science Education and Research (IISER), Pune, Dr. Homi Bhabha Road, Pune 411008, India
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28
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Ma CY, Moldovan AA, Maloney AGP, Roberts KJ. Exploring the CSD Drug Subset: An Analysis of Lattice Energies and Constituent Intermolecular Interactions for the Crystal Structures of Pharmaceuticals. J Pharm Sci 2023; 112:435-445. [PMID: 36462705 DOI: 10.1016/j.xphs.2022.11.027] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2022] [Revised: 11/25/2022] [Accepted: 11/25/2022] [Indexed: 12/02/2022]
Abstract
Intermolecular (synthonic) modelling is used for a statistical analysis of crystal lattice energies, together with their contributing intermolecular interactions for the crystallographic structures selected from the CCDC's Drug Subset (https://doi.org/10.1016/j.xphs.2018.12.011). Analysis of this selected subset reveal similarities in packing compared to other organic crystals in the CSD with linear relationships between molecular weight and unit cell volume, void space, and packing coefficient. Crystal lattice energy calculations converge within a 30 Å intermolecular radius characterised by a mean lattice energy of ca. -36 kcal mol-1 with ca. 85% and 15% due to dispersive and electrostatic interactions, respectively. The distribution of the strongest synthons within the individual structures reveals an average strength of -5.79 kcal mol-1. The diversity of chemical space within the drug molecules is in agreement with the analysis of atom types across the selected subset with phenyl groups being found to contribute the highest mean energy of -11.28 kcal mol-1, highlighting the importance of aromatic interactions within pharmaceutical compounds. Despite an initial focus on Z' = 1 structures, this automated approach enables rapid and consistent quantitative analysis of lattice energy, synthon strength and functional group contributions, providing solid-form informatics for pharmaceutical R&D and a helpful basis for further investigations.
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Affiliation(s)
- Cai Y Ma
- Centre for the Digital Design of Drug Products, School of Chemical and Process Engineering, University of Leeds, Leeds, LS2 9JT, UK.
| | - Alexandru A Moldovan
- The Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge, CB2 1EZ, UK
| | - Andrew G P Maloney
- The Cambridge Crystallographic Data Centre, 12 Union Road, Cambridge, CB2 1EZ, UK
| | - Kevin J Roberts
- Centre for the Digital Design of Drug Products, School of Chemical and Process Engineering, University of Leeds, Leeds, LS2 9JT, UK
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29
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Wang W, Wang L, Du F, Wang GD, Hou L, Zhu Z, Liu B, Wang YY. Dative B←N bonds based crystalline organic framework with permanent porosity for acetylene storage and separation. Chem Sci 2023; 14:533-539. [PMID: 36741528 PMCID: PMC9847669 DOI: 10.1039/d2sc06016g] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/01/2022] [Accepted: 12/02/2022] [Indexed: 12/12/2022] Open
Abstract
The utilization of dative B←N bonds for the creation of crystalline organic framework (BNOF) has increasingly received intensive interest; however, the shortage of permanent porosity is an obstacle that must be overcome to guarantee their application as porous materials. Here, we report the first microporous crystalline framework, BNOF-1, that is assembled through sole monomers, which can be scalably synthesized by the cheap 4-pyridine boronic acid. The 2D networks of BNOF-1 were stacked in parallel to generate a highly porous supramolecular open framework, which possessed not only the highest BET surface area of 1345 m2 g-1 amongst all of the BNOFs but also features a record-high uptake of C2H2 and CO2 in covalent organic framework (COF) materials to date. Dynamic breakthrough experiments demonstrated that BNOF-1 material can efficiently separate C2H2/CO2 mixtures. In addition, the network can be regenerated in organic solvents with no loss in performance, making its solution processable. We believe that BNOF-1 would greatly diversify the reticular chemistry and open new avenues for the application of BNOFs.
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Affiliation(s)
- Weize Wang
- College of Chemistry & Pharmacy, Northwest A&F UniversityYangling 712100P. R. China
| | - Linxia Wang
- College of Chemistry & Pharmacy, Northwest A&F UniversityYangling 712100P. R. China
| | - Fei Du
- College of Chemistry & Pharmacy, Northwest A&F UniversityYangling 712100P. R. China
| | - Gang-Ding Wang
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, Xi'an Key Laboratory of Functional Supramolecular Structure and Materials, College of Chemistry & Materials Science, Northwest UniversityXi'an 710127P. R. China
| | - Lei Hou
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, Xi'an Key Laboratory of Functional Supramolecular Structure and Materials, College of Chemistry & Materials Science, Northwest UniversityXi'an 710127P. R. China
| | - Zhonghua Zhu
- School of Chemical Engineering, The University of QueenslandBrisbane4072Australia
| | - Bo Liu
- College of Chemistry & Pharmacy, Northwest A&F UniversityYangling 712100P. R. China
| | - Yao-Yu Wang
- Key Laboratory of Synthetic and Natural Functional Molecule of the Ministry of Education, Xi'an Key Laboratory of Functional Supramolecular Structure and Materials, College of Chemistry & Materials Science, Northwest UniversityXi'an 710127P. R. China
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30
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Marchetti D, Portone F, Mezzadri F, Dalcanale E, Gemmi M, Pedrini A, Massera C. Selective and Reversible Solvent Uptake in Tetra-4-(4-pyridyl)phenylmethane-based Supramolecular Organic Frameworks. Chemistry 2022; 28:e202202977. [PMID: 36161363 PMCID: PMC10092063 DOI: 10.1002/chem.202202977] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2022] [Indexed: 12/29/2022]
Abstract
The dynamic behavior of supramolecular organic frameworks (SOFs) based on the rigid tetra-4-(4-pyridyl)phenylmethane (TPPM) organic tecton has been elucidated through 3D electron diffraction, X-ray powder diffraction and differential scanning calorimetry (DSC) analysis. The SOF undergoes a reversible single-crystal-to-single-crystal transformation when exposed to vapours of selected organic solvents, moving from a closed structure with isolated small voids to an expanded structure with solvated channels along the b axis. The observed selectivity is dictated by the fitting of the guest in the expanded SOF, following the degree of packing coefficient. The effect of solvent uptake on TPPM solid-state fluorescence was investigated, evidencing a significant variation in the emission profile only in the presence of chloroform.
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Affiliation(s)
- Danilo Marchetti
- Department of Chemistry, Life Sciences and Environmental Sustainability INSTM UdR ParmaUniversity of ParmaParco Area delle Scienze 17/A43124ParmaItaly
- Center for Materials Interfaces Electron CrystallographyIstituto Italiano di TecnologiaViale Rinaldo Piaggio 3456025PontederaItaly
| | - Francesca Portone
- Department of Chemistry, Life Sciences and Environmental Sustainability INSTM UdR ParmaUniversity of ParmaParco Area delle Scienze 17/A43124ParmaItaly
| | - Francesco Mezzadri
- Department of Chemistry, Life Sciences and Environmental Sustainability INSTM UdR ParmaUniversity of ParmaParco Area delle Scienze 17/A43124ParmaItaly
| | - Enrico Dalcanale
- Department of Chemistry, Life Sciences and Environmental Sustainability INSTM UdR ParmaUniversity of ParmaParco Area delle Scienze 17/A43124ParmaItaly
| | - Mauro Gemmi
- Center for Materials Interfaces Electron CrystallographyIstituto Italiano di TecnologiaViale Rinaldo Piaggio 3456025PontederaItaly
| | - Alessandro Pedrini
- Department of Chemistry, Life Sciences and Environmental Sustainability INSTM UdR ParmaUniversity of ParmaParco Area delle Scienze 17/A43124ParmaItaly
| | - Chiara Massera
- Department of Chemistry, Life Sciences and Environmental Sustainability INSTM UdR ParmaUniversity of ParmaParco Area delle Scienze 17/A43124ParmaItaly
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31
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A data-driven and topological mapping approach for the a priori prediction of stable molecular crystalline hydrates. Proc Natl Acad Sci U S A 2022; 119:e2204414119. [PMID: 36252020 DOI: 10.1073/pnas.2204414119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022] Open
Abstract
Predictions of the structures of stoichiometric, fractional, or nonstoichiometric hydrates of organic molecular crystals are immensely challenging due to the extensive search space of different water contents, host molecular placements throughout the crystal, and internal molecular conformations. However, the dry frameworks of these hydrates, especially for nonstoichiometric or isostructural dehydrates, can often be predicted from a standard anhydrous crystal structure prediction (CSP) protocol. Inspired by developments in the field of drug binding, we introduce an efficient data-driven and topologically aware approach for predicting organic molecular crystal hydrate structures through a mapping of water positions within the crystal structure. The method does not require a priori specification of water content and can, therefore, predict stoichiometric, fractional, and nonstoichiometric hydrate structures. This approach, which we term a mapping approach for crystal hydrates (MACH), establishes a set of rules for systematic determination of favorable positions for water insertion within predicted or experimental crystal structures based on considerations of the chemical features of local environments and void regions. The proposed approach is tested on hydrates of three pharmaceutically relevant compounds that exhibit diverse crystal packing motifs and void environments characteristic of hydrate structures. Overall, we show that our mapping approach introduces an advance in the efficient performance of hydrate CSP through generation of stable hydrate stoichiometries at low cost and should be considered an integral component for CSP workflows.
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32
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Chen WJ, Lee CY, Huang YH, Chen JD. Cd(II) and Co(II) coordination polymers constructed from N,N'-Bis(3-pyridylmethyl)oxalamide and 1,4-Naphthalenedicarboxylic acid. Polyhedron 2022. [DOI: 10.1016/j.poly.2022.115991] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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33
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Mollart C, Holcroft S, Peach MJG, Rowling A, Trewin A. Artificial synthesis of covalent triazine frameworks for local structure and property determination. Phys Chem Chem Phys 2022; 24:20025-20029. [PMID: 35975691 DOI: 10.1039/d2cp02430f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Here we show an 'artificial synthesis' method for covalent triazine framework (CTF) materials, enabling localised structural features to be incorporated that result directly from the acid-catalysed synthetic protocol that would otherwise not be captured. This advancement will enable prediction and design of new CTF materials with targeted properties.
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Affiliation(s)
- Catherine Mollart
- Department of Chemistry, Lancaster University, Lancaster, UK LA1 4YB, UK.
| | - Sarah Holcroft
- Department of Chemistry, Lancaster University, Lancaster, UK LA1 4YB, UK.
| | - Michael J G Peach
- Department of Chemistry, Lancaster University, Lancaster, UK LA1 4YB, UK.
| | - Adam Rowling
- Department of Chemistry, Lancaster University, Lancaster, UK LA1 4YB, UK.
| | - Abbie Trewin
- Department of Chemistry, Lancaster University, Lancaster, UK LA1 4YB, UK.
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34
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Multiple yet switchable hydrogen-bonded organic frameworks with white-light emission. Nat Commun 2022; 13:1882. [PMID: 35388019 PMCID: PMC8987099 DOI: 10.1038/s41467-022-29565-1] [Citation(s) in RCA: 44] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2021] [Accepted: 03/17/2022] [Indexed: 12/22/2022] Open
Abstract
The development of new strategies to construct on-demand porous lattice frameworks from simple motifs is desirable. However, mitigating complexity while combing multiplicity and reversibility in the porous architectures is a challenging task. Herein, based on the synergy of dynamic intermolecular interactions and flexible molecular conformation of a simple cyano-modified tetraphenylethylene tecton, eleven kinetic-stable hydrogen-bonded organic frameworks (HOFs) with various shapes and two thermo-stable non-porous structures with rare perpendicular conformation are obtained. Multimode reversible structural transformations along with visible fluorescence output between porous and non-porous or between different porous forms is realized under different external stimuli. Furthermore, the collaborative of flexible framework and soft long-chain guests facilitate the relaxation from intrinsic blue emission to yellow emission in the excited state, which represents a strategy for generating white-light emission. The dynamic intermolecular interactions, facilitated by flexible molecular conformation and soft guests, diversifies the strategies of construction of versatile smart molecular frameworks. Switchable hydrogen-bonded frameworks have potential applications in the development of smart materials. Herein, the authors report eleven hydrogen-bonded organic frameworks and two non-porous structures that can undergo reversible structural and fluorescence switching; white-light emission is enabled.
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35
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Hexnut[12]arene and its derivatives: Synthesis, host-guest properties, and application as nonporous adaptive crystals. Sci China Chem 2022. [DOI: 10.1007/s11426-021-1186-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/19/2022]
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36
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Zacharias SC, Ramon G, Bourne SA. Solvatochromism and the effect of solvent on properties in a two-dimensional coordination polymer of cobalt-trimesate. CrystEngComm 2022. [DOI: 10.1039/d2ce00039c] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
A 2D coordination polymer can exchange guest species from liquid sorption, with accompanying visible colour changes.
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Affiliation(s)
- Savannah C. Zacharias
- Centre for Supramolecular Chemistry Research, Department of Chemistry, University of Cape Town, Rondebosch, Cape Town, 7701, South Africa
| | - Gaëlle Ramon
- Centre for Supramolecular Chemistry Research, Department of Chemistry, University of Cape Town, Rondebosch, Cape Town, 7701, South Africa
| | - Susan A. Bourne
- Centre for Supramolecular Chemistry Research, Department of Chemistry, University of Cape Town, Rondebosch, Cape Town, 7701, South Africa
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37
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Malinska M. Insights into molecular recognition from the crystal structures of p-tert-butyl-calix[6]arene complexed with different solvents. IUCRJ 2022; 9:55-64. [PMID: 35059210 PMCID: PMC8733874 DOI: 10.1107/s2052252521010678] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Accepted: 10/14/2021] [Indexed: 06/14/2023]
Abstract
Calixarenes are host molecules that can form complexes with one or more guest molecules, and molecular recognition in calixarenes can be affected by many factors. With a view to establishing molecular recognition rules, the host p-tert-butyl-calix[6]arene (TBC6) was crystallized with different guest molecules (cyclo-hexane, anisole, heptane, toluene, benzene, methyl acetate, ethyl acetate, di-chloro-methane, tetra-hydro-furan and pyridine) and the obtained structures were characterized by X-ray diffraction. With most solvents, 1:1 and/or 1:3 host-guest complexes were formed, although other stoichiometries were also observed with small guest molecules, and crystallization from ethyl acetate produced the unsolvated form. The calculated fill percentage of the TBC6 cavity was ∼55% for apolar guests and significantly lower for polar solvents, indicating that polar molecules can bind to apolar cavities with significantly lower packing coefficients. The most stable crystals were formed by 1:1 host-guest inclusion complexes. The ratio between the apolar surface area and the volume was used to predict the formation of inclusion versus exclusion complexes, with inclusion complexes observed at ratios <40. These findings allow the binding of potential guest molecules to be predicted and a suitable crystal packing for the designed properties to be obtained.
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Affiliation(s)
- Maura Malinska
- Faculty of Chemistry, University of Warsaw, Pasteura 1, Warsaw, Poland
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Hernandez A, Chakraborty I, Ortega G, Dares CJ. Crystal structure of a trigonal polymorph of aqua-dioxidobis(pentane-2,4-dionato-κ 2 O, O')uranium(VI). Acta Crystallogr E Crystallogr Commun 2022; 78:40-43. [PMID: 35079421 PMCID: PMC8739209 DOI: 10.1107/s2056989021011063] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/24/2021] [Accepted: 10/21/2021] [Indexed: 11/12/2022]
Abstract
The title compound, [UO2(acac)2(H2O)] consists of a uran-yl(VI) unit ([O=U=O]2+) coordinated to two monoanionic acetyl-acetonate (acac, C5H7O2) ligands and one water mol-ecule. The asymmetric unit includes a one-half of a uranium atom, one oxido ion, one-half of a water mol-ecule and one acac ligand. The coordination about the uranium atom is distorted penta-gonal-bipyramidal. The acac ligands and Ow atom comprise the equatorial plane, while the uranyl O atoms occupy the axial positions. Inter-molecular hydrogen bonding between complexes results in the formation of two-dimensional hexa-gonal void channels along the c-axis direction with a diameter of 6.7 Å. The monoclinic (P21/c space group) polymorph was reported by Alcock & Flanders [(1987). Acta Cryst. C43, 1480-1483].
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Affiliation(s)
- Alejandro Hernandez
- Department of Chemistry and Biochemistry, Florida International University, 11200 SW 8th St., Miami, FL 33199, USA
| | - Indranil Chakraborty
- Department of Chemistry and Biochemistry, Florida International University, 11200 SW 8th St., Miami, FL 33199, USA
| | - Gabriela Ortega
- Department of Chemistry and Biochemistry, Florida International University, 11200 SW 8th St., Miami, FL 33199, USA
| | - Christopher J. Dares
- Department of Chemistry and Biochemistry, Florida International University, 11200 SW 8th St., Miami, FL 33199, USA
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Bazyakina NL, Moskalev MV, Cherkasov AV, Makarov VM, Fedushkin IL. Coordination polymers derived from alkali metal complexes of redox-active ligands. CrystEngComm 2022. [DOI: 10.1039/d1ce01698a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Treatment solutions of (dpp-bian)M (dpp-bian = 1,2-bis[(2,6-diisopropylphenyl)imino]acenaphthene; M = Li, Na, K) with 4,4′-bipyridine (4,4′-bipy) affords coordination polymers [(dpp-bian)M(4,4′-bipy)m]n, (M = Li or K, m = 1; M = Na, m = 2).
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Affiliation(s)
- Natalia L. Bazyakina
- G.A. Razuvaev Institute of Organometallic Chemistry of Russian Academy of Sciences, Tropinina str. 49, 603950 Nizhny Novgorod, Russian Federation
| | - Mikhail V. Moskalev
- G.A. Razuvaev Institute of Organometallic Chemistry of Russian Academy of Sciences, Tropinina str. 49, 603950 Nizhny Novgorod, Russian Federation
| | - Anton V. Cherkasov
- G.A. Razuvaev Institute of Organometallic Chemistry of Russian Academy of Sciences, Tropinina str. 49, 603950 Nizhny Novgorod, Russian Federation
| | - Valentin M. Makarov
- G.A. Razuvaev Institute of Organometallic Chemistry of Russian Academy of Sciences, Tropinina str. 49, 603950 Nizhny Novgorod, Russian Federation
| | - Igor L. Fedushkin
- G.A. Razuvaev Institute of Organometallic Chemistry of Russian Academy of Sciences, Tropinina str. 49, 603950 Nizhny Novgorod, Russian Federation
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40
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Sarkar M, Rajasekar P, Jose C, Boomishankar R. Polyanionic Imido-P(V) Ligands: From Transition Metal Complexes to Coordination Driven Self-Assemblies. CHEM REC 2021; 22:e202100281. [PMID: 34962082 DOI: 10.1002/tcr.202100281] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/27/2021] [Revised: 12/03/2021] [Indexed: 11/11/2022]
Abstract
The chemistry of the imido-anions of the main group elements has been studied for more than three decades. The imido (NR)- group is isoelectronic to the oxo (=O) group and can coordinate with metal ions through its lone pairs of electrons. The polyimido-P(V) anions are well explored as they resemble the phosphorus oxo moieties such as H3 PO4 , H2 PO4 - , HPO4 2- and PO4 3- species. These imido anions are typically generated using strong main group organometallic reagents such as n BuLi, Et2 Zn, Me3 Al and n Bu2 Mg, etc. As a result, their coordination chemistry has been restricted to reactions in anhydrous aprotic solvents for a few main group metal ions. This account presents our findings on using certain soft transition metal such Ag(I) and Pd (II) for isolating these imido-P(V) anions as their corresponding self-assembled clusters and cages. Using the various salts of Ag(I) ions in reaction with 2-pyridyl (2 Py) functionalized phosphonium salts and phosphoric triamides, we obtained the mono- and dianionic form of these imido ligands {[P(N2 Py)2 (NH2 Py)2 ]- , [P(N2 Py)2 (NH2 Py)]- , [PO(N2 Py)(NH2 Py)2 ]2- } and derived interesting examples of tri, penta, hepta and octanuclear Ag(I) clusters. Interestingly, by using the salts of Pd (II) ions, the elusive imido-phosphate trianions of the type [(RN)3 PO]3- (R=t Bu, c Hex, i Pr) were generated in a facile one pot reaction as their corresponding tri- and hexanuclear clusters of the type {Pd3 [(NR)3 PO](OAc)3 }n (n=1 or 2). These trianions acts as a cis-coordinated hexadentate ligand for a trinuclear Pd (II) cluster and serve as the polyhedral building units for constructing hitherto unknown family of neutral cages in tetrahedral {Pd3 [(Ni Pr)3 PO]4 (L)6 } and cubic {Pd3 [(Ni Pr)3 PO]8 (L)12 } structures in the presence of suitable linker ligands (L2- ). These cages show interesting host-guest chemistry and post-assembly reactions. Remarkably, by employing chiral tris(imido)phosphate trianions, enantiopure chiral cages of the type [(Pd3 X*)4 (L)6 ], ([X*]3- =RRR- or SSS-[PO(N(*CH(CH3 )Ph)3 ]3- ), were synthesized and used for the chiral-recognition and enantio-separation of small racemic guest molecules. Some of these chiral cages were also shown to exhibit polyradical framework structures. In future, these and other similar types of cages are envisioned as potential molecular vessels for performing the reactions in their confined environment. The enantiomeric cages can be probed for asymmetric catalysis and the separation of a range of small chiral molecules.
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Affiliation(s)
- Meghamala Sarkar
- Department of Chemistry, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune, 411008, India
| | - Prabhakaran Rajasekar
- Department of Chemistry, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune, 411008, India
| | - Cavya Jose
- Department of Chemistry, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune, 411008, India
| | - Ramamoorthy Boomishankar
- Department of Chemistry, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune, 411008, India.,Centre for Energy Science, Indian Institute of Science Education and Research, Pune, Dr. Homi Bhabha Road, Pune, 411008, India
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41
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Eckstein BJ, Brown LC, Noll BC, Moghadasnia MP, Balaich GJ, McGuirk CM. A Porous Chalcogen-Bonded Organic Framework. J Am Chem Soc 2021; 143:20207-20215. [PMID: 34818002 DOI: 10.1021/jacs.1c08642] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
The manner of bonding between constituent atoms or molecules invariably influences the properties of materials. Perhaps no material family is more emblematic of this than porous frameworks, wherein the namesake modes of connectivity give rise to discrete subclasses with unique collections of properties. However, established framework classes often display offsetting advantages and disadvantages for a given application. Thus, there exists no universally applicable material, and the discovery of alternative modes of framework connectivity is highly desirable. Here we show that chalcogen bonding, a subclass of σ-hole bonding, is a viable mode of connectivity in low-density porous frameworks. Crystallization studies with the triptycene tris(1,2,5-selenadiazole) molecular tecton reveal how chalcogen bonding can template high-energy lattice structures and how solvent conditions can be rationalized to obtain molecularly programmed porous chalcogen-bonded organic frameworks (ChOFs). These results provide the first evidence that σ-hole bonding can be used to advance the diversity of porous framework materials.
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Affiliation(s)
- Brian J Eckstein
- Department of Chemistry, Colorado School of Mines, Golden, Colorado 80401, United States
| | - Loren C Brown
- Department of Chemistry and Chemistry Research Center, Laboratories for Advanced Materials, United States Air Force Academy, Colorado Springs, Colorado 80840, United States
| | - Bruce C Noll
- Bruker AXS Inc., 5465 East Cheryl Parkway, Madison, Wisconsin 53711, United States
| | - Michael P Moghadasnia
- Department of Chemistry, Colorado School of Mines, Golden, Colorado 80401, United States
| | - Gary J Balaich
- Department of Chemistry and Chemistry Research Center, Laboratories for Advanced Materials, United States Air Force Academy, Colorado Springs, Colorado 80840, United States
| | - C Michael McGuirk
- Department of Chemistry, Colorado School of Mines, Golden, Colorado 80401, United States
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42
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Ring OT, Hayter BR, Ronson TO, Agnew LR, Ashworth IW, Cherryman J, Gall MAY, Hamilton PR, Inglesby PA, Jones MF, Lamacraft AL, Leahy AJ, McKinney D, Miller-Potucka L, Powell L, Putra OD, Robbins AJ, Tomasi S, Wordsworth RA. Process Development, Manufacture, and Understanding of the Atropisomerism and Polymorphism of Verinurad. Org Process Res Dev 2021. [DOI: 10.1021/acs.oprd.1c00284] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Oliver T. Ring
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Barry R. Hayter
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Thomas O. Ronson
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Lauren R. Agnew
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Ian W. Ashworth
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Janette Cherryman
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Malcolm A. Y. Gall
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Peter R. Hamilton
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Phillip A. Inglesby
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Martin F. Jones
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Alex L. Lamacraft
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Adam J. Leahy
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - David McKinney
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Lucie Miller-Potucka
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Lyn Powell
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Okky D. Putra
- Early Product Development and Manufacturing, Pharmaceutical Sciences, BioPharmaceuticals R&D, AstraZeneca, Gothenburg 431 50, Sweden
| | - Andrew J. Robbins
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Simone Tomasi
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
| | - Rosemary A. Wordsworth
- Chemical Development, Pharmaceutical Technology & Development, Operations, AstraZeneca, Macclesfield SK10 2NA, United Kingdom
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43
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Hua B, Ding Y, Alimi LO, Moosa B, Zhang G, Baslyman WS, Sessler J, Khashab NM. Tuning the porosity of triangular supramolecular adsorbents for superior haloalkane isomer separations. Chem Sci 2021; 12:12286-12291. [PMID: 34603658 PMCID: PMC8480323 DOI: 10.1039/d1sc03509f] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2021] [Accepted: 08/14/2021] [Indexed: 12/19/2022] Open
Abstract
Distillation-free separations of haloalkane isomers represents a persistent challenge for the chemical industry. Several classic molecular sorbents show high selectivity in the context of such separations; however, most suffer from limited tunability or poor stability. Herein, we report the results of a comparative study involving three trianglamine and trianglimine macrocycles as supramolecular adsorbents for the selective separation of halobutane isomers. Methylene-bridged trianglamine, TA, was found to capture preferentially 1-chlorobutane (1-CBU) from a mixture of 1-CBU and 2-chlorobutane (2-CBU) with a purity of 98.1%. It also separates 1-bromobutane (1-BBU) from a mixture of 1-BBU and 2-bromobutane (2-BBU) with a purity of 96.4%. The observed selectivity is ascribed to the thermodynamic stability of the TA-based host–guest complexes. Based on single crystal X-ray diffraction analyses, a [3]pseudorotaxane structure (2TA⊃1-CBU) is formed between TA and 1-CBU that is characterized by an increased level of noncovalent interactions compared to the corresponding [2]pseudorotaxane structure seen for TA⊃2-CBU. We believe that molecular sorbents that rely on specific molecular recognition events, such as the triangular pores detailed here, will prove useful as next generation sorbents in energy-efficient separations. The methylene-bridged trianglamine (TA) can selectively capture 1-chlorobutane from a mixture of 1-chlorobutane and 2-chlorobutane due to the greater thermodynamic stability of the TA-based host–guest complex formed with 1-chlorobutane.![]()
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Affiliation(s)
- Bin Hua
- Smart Hybrid Materials Laboratory (SHMs), Advanced Membranes and Porous Materials Center, King Abdullah University of Science and Technology (KAUST) Thuwal 23955-6900 Saudi Arabia
| | - Yanjun Ding
- Smart Hybrid Materials Laboratory (SHMs), Advanced Membranes and Porous Materials Center, King Abdullah University of Science and Technology (KAUST) Thuwal 23955-6900 Saudi Arabia
| | - Lukman O Alimi
- Smart Hybrid Materials Laboratory (SHMs), Advanced Membranes and Porous Materials Center, King Abdullah University of Science and Technology (KAUST) Thuwal 23955-6900 Saudi Arabia
| | - Basem Moosa
- Smart Hybrid Materials Laboratory (SHMs), Advanced Membranes and Porous Materials Center, King Abdullah University of Science and Technology (KAUST) Thuwal 23955-6900 Saudi Arabia
| | - Gengwu Zhang
- Smart Hybrid Materials Laboratory (SHMs), Advanced Membranes and Porous Materials Center, King Abdullah University of Science and Technology (KAUST) Thuwal 23955-6900 Saudi Arabia
| | - Walaa S Baslyman
- Smart Hybrid Materials Laboratory (SHMs), Advanced Membranes and Porous Materials Center, King Abdullah University of Science and Technology (KAUST) Thuwal 23955-6900 Saudi Arabia
| | - Jonathan Sessler
- Department of Chemistry, The University of Texas at Austin Austin TX 78712-1224 USA
| | - Niveen M Khashab
- Smart Hybrid Materials Laboratory (SHMs), Advanced Membranes and Porous Materials Center, King Abdullah University of Science and Technology (KAUST) Thuwal 23955-6900 Saudi Arabia
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44
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van Wyk LM, Loots L, Barbour LJ. Tuning extreme anisotropic thermal expansion in 1D coordination polymers through metal selection and solid solutions. Chem Commun (Camb) 2021; 57:7693-7696. [PMID: 34259257 DOI: 10.1039/d1cc01717a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The thermal expansion behaviour of a series of 1D coordination polymers has been investigated. Variation of the metal centre allows tuning of the thermal expansion behaviour from colossal positive volumetric to extreme anomalous thermal expansion. Preparation of solid solutions increased the magnitude of the anomalous thermal expansion further, producing two species displaying supercolossal anisotropic thermal expansion (ZnCoCPHTαY2 = -712 MK-1, αY3 = 1632 MK-1 and ZnCdCPHTαY2 = -711 MK-1, αY3 = 1216 MK-1).
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Affiliation(s)
- Lisa M van Wyk
- Department of Chemistry and Polymer Science, University of Stellenbosch, Matieland 7602, South Africa.
| | - Leigh Loots
- Department of Chemistry and Polymer Science, University of Stellenbosch, Matieland 7602, South Africa.
| | - Leonard J Barbour
- Department of Chemistry and Polymer Science, University of Stellenbosch, Matieland 7602, South Africa.
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45
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Ivanova S, Köster E, Holstein JJ, Keller N, Clever GH, Bein T, Beuerle F. Isoreticular Crystallization of Highly Porous Cubic Covalent Organic Cage Compounds*. Angew Chem Int Ed Engl 2021; 60:17455-17463. [PMID: 33905140 PMCID: PMC8362030 DOI: 10.1002/anie.202102982] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2021] [Revised: 04/23/2021] [Indexed: 12/13/2022]
Abstract
Modular frameworks featuring well-defined pore structures in microscale domains establish tailor-made porous materials. For open molecular solids however, maintaining long-range order after desolvation is inherently challenging, since packing is usually governed by only a few supramolecular interactions. Here we report on two series of nanocubes obtained by co-condensation of two different hexahydroxy tribenzotriquinacenes (TBTQs) and benzene-1,4-diboronic acids (BDBAs) with varying linear alkyl chains in 2,5-position. n-Butyl groups at the apical position of the TBTQ vertices yielded soluble model compounds, which were analyzed by mass spectrometry and NMR spectroscopy. In contrast, methyl-substituted cages spontaneously crystallized as isostructural and highly porous solids with BET surface areas and pore volumes of up to 3426 m2 g-1 and 1.84 cm3 g-1 . Single crystal X-ray diffraction and sorption measurements revealed an intricate cubic arrangement of alternating micro- and mesopores in the range of 0.97-2.2 nm that are fine-tuned by the alkyl substituents at the BDBA linker.
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Affiliation(s)
- Svetlana Ivanova
- Julius-Maximilians-Universität WürzburgInstitut für Organische ChemieAm Hubland97074WürzburgGermany
- Julius-Maximilians-Universität WürzburgCenter for Nanosystems Chemistry (CNC)Theodor-Boveri-Weg97074WürzburgGermany
| | - Eva Köster
- Julius-Maximilians-Universität WürzburgInstitut für Organische ChemieAm Hubland97074WürzburgGermany
- Julius-Maximilians-Universität WürzburgCenter for Nanosystems Chemistry (CNC)Theodor-Boveri-Weg97074WürzburgGermany
| | - Julian J. Holstein
- Technische Universität DortmundFakultät für Chemie und Chemische BiologieOtto-Hahn-Strasse 644227DortmundGermany
| | - Niklas Keller
- Ludwig-Maximilians-Universität MünchenDepartment of Chemistry & Center for NanoScience (CeNS)Butenandtstrasse 5–1381377MünchenGermany
| | - Guido H. Clever
- Technische Universität DortmundFakultät für Chemie und Chemische BiologieOtto-Hahn-Strasse 644227DortmundGermany
| | - Thomas Bein
- Ludwig-Maximilians-Universität MünchenDepartment of Chemistry & Center for NanoScience (CeNS)Butenandtstrasse 5–1381377MünchenGermany
| | - Florian Beuerle
- Julius-Maximilians-Universität WürzburgInstitut für Organische ChemieAm Hubland97074WürzburgGermany
- Julius-Maximilians-Universität WürzburgCenter for Nanosystems Chemistry (CNC)Theodor-Boveri-Weg97074WürzburgGermany
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46
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Ivanova S, Köster E, Holstein JJ, Keller N, Clever GH, Bein T, Beuerle F. Isoretikuläre Kristallisation von hochporösen kubischen kovalentorganischen Käfigverbindungen**. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202102982] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Affiliation(s)
- Svetlana Ivanova
- Julius-Maximilians-Universität Würzburg Institut für Organische Chemie Am Hubland 97074 Würzburg Deutschland
- Julius-Maximilians-Universität Würzburg Center for Nanosystems Chemistry (CNC) Theodor-Boveri-Weg 97074 Würzburg Deutschland
| | - Eva Köster
- Julius-Maximilians-Universität Würzburg Institut für Organische Chemie Am Hubland 97074 Würzburg Deutschland
- Julius-Maximilians-Universität Würzburg Center for Nanosystems Chemistry (CNC) Theodor-Boveri-Weg 97074 Würzburg Deutschland
| | - Julian J. Holstein
- Technische Universität Dortmund Fakultät für Chemie und Chemische Biologie Otto-Hahn-Straße 6 44227 Dortmund Deutschland
| | - Niklas Keller
- Ludwig-Maximilians-Universität München Department of Chemistry & Center for NanoScience (CeNS) Butenandtstraße 5–13 81377 München Deutschland
| | - Guido H. Clever
- Technische Universität Dortmund Fakultät für Chemie und Chemische Biologie Otto-Hahn-Straße 6 44227 Dortmund Deutschland
| | - Thomas Bein
- Ludwig-Maximilians-Universität München Department of Chemistry & Center for NanoScience (CeNS) Butenandtstraße 5–13 81377 München Deutschland
| | - Florian Beuerle
- Julius-Maximilians-Universität Würzburg Institut für Organische Chemie Am Hubland 97074 Würzburg Deutschland
- Julius-Maximilians-Universität Würzburg Center for Nanosystems Chemistry (CNC) Theodor-Boveri-Weg 97074 Würzburg Deutschland
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47
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Gupta R, Paithankar H, Chugh J, Boomishankar R. Construction of Entropically Favored Supramolecular Metal-Ligand Trimeric Assemblies Supported by Flexible Pyridylaminophosphorus(V) Scaffolds. Inorg Chem 2021; 60:10468-10477. [PMID: 34232616 DOI: 10.1021/acs.inorgchem.1c01086] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The self-assembly reactions of tetratopic metal acceptors with the flexible bidentate ligands are known to yield self-assembled molecular squares of the type [M4L8], triangles of composition [M3L6], or a mixture of these two. In this work, we demonstrate the preferential formation of a trimeric cage assembly of the formula [Pd3(L1)6·(BF4)6] (1a) over the tetrameric cage [Pd4(L1)8·(BF4)8] (1b) by employing a flexible dipodal phosphoramide ligand, [PhPO(NH(3-Py))2] (L1; 3-Py = 3-aminopyridine), in a reaction with [Pd(CH3CN)4·(BF4)2]. The entropically favored trimeric self-assembly of 1a is the predominant species in the solution [dimethyl sulfoxide (DMSO)-d6] at room temperature. In fact, at higher temperatures, 1a was found to be the only product, as observed from the disappearance of the peak due to 1b in the 31P NMR spectrum. However, in a 1:1 mixture of acetonitrile (MeCN)-d3 and DMSO-d6, the tetrameric species 1b is the preferred species, as revealed by the 31P NMR and electrospray ionization mass spectral analyses. The structure of the molecular trimer 1a has been established in the solid state by using single-crystal X-ray diffraction analysis. Interestingly, treatment of an another flexible ligand, [MePO(NH(3-Py))2] (L2), with the same Pd(II) acceptor resulted in exclusive formation of the trimeric cage [Pd3(L2)6·(BF4)6] (2).
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48
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Rajasekar P, Swain A, Rajaraman G, Boomishankar R. Enantiopure Polyradical Tetrahedral Pd 12 L 6 Cages. Chemistry 2021; 27:10012-10015. [PMID: 33978271 DOI: 10.1002/chem.202101239] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2021] [Indexed: 11/08/2022]
Abstract
The synthesis of cages with a polyradical framework remains a challenging task. Herein is reported an enantiomeric pair of quinoid-bridged polyradical tetrahedral palladium(II) cages that are stabilized by an unusual dianionic diradical form (dhbq..2- ). These cages have been characterized by electron paramagnetic resonance and UV-visible spectroscopy, squid magnetometry and mass spectrometry. Single-crystal-derived X-ray investigations of the iso-structural cages built on fluoranilate linkers confirm the tetrahedral structure of the obtained radical cages. Theoretical calculations showed that the diradical state of the dhbq anions is more stable than the usual monoradical state. A weak ferromagnetic exchange between adjacent radical centers was observed in DFT studies.
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Affiliation(s)
- Prabhakaran Rajasekar
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Pune, 411008, India
| | - Abinash Swain
- Department of Chemistry, Indian Institute of Technology, Bombay, Mumbai, 400076, India
| | - Gopalan Rajaraman
- Department of Chemistry, Indian Institute of Technology, Bombay, Mumbai, 400076, India
| | - Ramamoorthy Boomishankar
- Department of Chemistry, Indian Institute of Science Education and Research Pune, Pune, 411008, India.,Centre for Energy Science, Indian Institute of Science Education and Research Pune, Dr. Homi Bhabha Road, Pune, 411008, India
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49
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van Heerden DP, Smith VJ, Aggarwal H, Barbour LJ. High Pressure In Situ Single-Crystal X-Ray Diffraction Reveals Turnstile Linker Rotation Upon Room-Temperature Stepped Uptake of Alkanes. Angew Chem Int Ed Engl 2021; 60:13430-13435. [PMID: 33780117 DOI: 10.1002/anie.202102327] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/15/2021] [Indexed: 11/11/2022]
Abstract
The rare availability of suitable single-crystal X-ray diffraction (SCXRD) structural data allows for the direct interpretation of the response of a framework to gas sorption and may lead to the development of improved functional porous materials. We report an in situ SCXRD structural investigation of a flexible MOF subjected to methane, ethane, propane, and butane gas pressures. Supporting theoretical investigations indicate weak host-guest interactions for the crystallographically modelled gaseous guests and, in addition, reveal that a turnstile mechanism facilitates the transport of alkanes through the seemingly nonporous system. Inflections present in the adsorption isotherms are furthermore rationalized as due to gate-opening, but without the expected creation of new accessible space.
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Affiliation(s)
- Dewald P van Heerden
- Department of Chemistry and Polymer Science, Stellenbosch University, Matieland, 7602, South Africa
| | - Vincent J Smith
- Department of Chemistry, Rhodes University, Makhanda, 6140, South Africa
| | - Himanshu Aggarwal
- Department of Chemistry, Birla Institute of Technology and Science, Hyderabad, 500078, India
| | - Leonard J Barbour
- Department of Chemistry and Polymer Science, Stellenbosch University, Matieland, 7602, South Africa
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50
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Heerden DP, Smith VJ, Aggarwal H, Barbour LJ. High Pressure In Situ Single‐Crystal X‐Ray Diffraction Reveals Turnstile Linker Rotation Upon Room‐Temperature Stepped Uptake of Alkanes. Angew Chem Int Ed Engl 2021. [DOI: 10.1002/ange.202102327] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
Affiliation(s)
- Dewald P. Heerden
- Department of Chemistry and Polymer Science Stellenbosch University Matieland 7602 South Africa
| | - Vincent J. Smith
- Department of Chemistry Rhodes University Makhanda 6140 South Africa
| | - Himanshu Aggarwal
- Department of Chemistry Birla Institute of Technology and Science Hyderabad 500078 India
| | - Leonard J. Barbour
- Department of Chemistry and Polymer Science Stellenbosch University Matieland 7602 South Africa
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