1
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Deckers C, Rehm TH. In situ Diazonium Salt Formation and Photochemical Aryl-Aryl Coupling in Continuous Flow Monitored by Inline NMR Spectroscopy. Chemistry 2024; 30:e202303692. [PMID: 38462439 DOI: 10.1002/chem.202303692] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/07/2023] [Revised: 03/09/2024] [Accepted: 03/10/2024] [Indexed: 03/12/2024]
Abstract
A novel class of diazonium salts is introduced for the photochemical aryl-aryl coupling to produce (substituted) biphenyls. As common diazonium tetrafluoroborate salts fail, soluble and safe aryl diazonium trifluoroacetates are applied. In this mild synthesis route no catalysts are required to generate an aryl-radical by irradiation with UV-A light (365 nm). This reactive species undergoes direct C-H arylation at an arene, forming the product in reasonable reaction times. With the implementation of a continuous flow setup in a capillary photoreactor 13 different biphenyl derivatives are successfully synthesized. By integrating an inline 19F-NMR benchtop spectrometer, samples are reliably quantified as the fluorine-substituents act as a probe. Here, real-time NMR spectroscopy is a perfect tool to monitor the continuously operated system, which produces fine chemicals of industrial relevance even in a multigram scale.
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Affiliation(s)
- Christoph Deckers
- Division Chemistry, Sustainable Chemical Syntheses Group, Fraunhofer Institute for Microengineering and Microsystems IMM, Carl-Zeiss-Strasse 18-20, 55129, Mainz, Germany
- Johannes Gutenberg University Mainz, Department of Chemistry, Duesbergweg 10-14, 55128, Mainz, Germany
| | - Thomas H Rehm
- Division Chemistry, Sustainable Chemical Syntheses Group, Fraunhofer Institute for Microengineering and Microsystems IMM, Carl-Zeiss-Strasse 18-20, 55129, Mainz, Germany
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2
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Kurdadze T, Lamadie F, Nehme KA, Teychené S, Biscans B, Rodriguez-Ruiz I. On-Chip Photonic Detection Techniques for Non-Invasive In Situ Characterizations at the Microfluidic Scale. SENSORS (BASEL, SWITZERLAND) 2024; 24:1529. [PMID: 38475065 DOI: 10.3390/s24051529] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2024] [Revised: 02/21/2024] [Accepted: 02/22/2024] [Indexed: 03/14/2024]
Abstract
Microfluidics has emerged as a robust technology for diverse applications, ranging from bio-medical diagnostics to chemical analysis. Among the different characterization techniques that can be used to analyze samples at the microfluidic scale, the coupling of photonic detection techniques and on-chip configurations is particularly advantageous due to its non-invasive nature, which permits sensitive, real-time, high throughput, and rapid analyses, taking advantage of the microfluidic special environments and reduced sample volumes. Putting a special emphasis on integrated detection schemes, this review article explores the most relevant advances in the on-chip implementation of UV-vis, near-infrared, terahertz, and X-ray-based techniques for different characterizations, ranging from punctual spectroscopic or scattering-based measurements to different types of mapping/imaging. The principles of the techniques and their interest are discussed through their application to different systems.
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Affiliation(s)
- Tamar Kurdadze
- CEA, DES, ISEC, DMRC, Univ Montpellier, 30207 Bagnols-sur-Ceze, Marcoule, France
| | - Fabrice Lamadie
- CEA, DES, ISEC, DMRC, Univ Montpellier, 30207 Bagnols-sur-Ceze, Marcoule, France
| | - Karen A Nehme
- Laboratoire de Génie Chimique, CNRS, UMR 5503, 4 Allée Emile Monso, 31432 Toulouse, France
| | - Sébastien Teychené
- Laboratoire de Génie Chimique, CNRS, UMR 5503, 4 Allée Emile Monso, 31432 Toulouse, France
| | - Béatrice Biscans
- Laboratoire de Génie Chimique, CNRS, UMR 5503, 4 Allée Emile Monso, 31432 Toulouse, France
| | - Isaac Rodriguez-Ruiz
- Laboratoire de Génie Chimique, CNRS, UMR 5503, 4 Allée Emile Monso, 31432 Toulouse, France
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3
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Jia N, Torres de Oliveira L, Bégin-Drolet A, Greener J. A spectIR-fluidic reactor for monitoring fast chemical reaction kinetics with on-chip attenuated total reflection Fourier transform infrared spectroscopy. ANALYTICAL METHODS : ADVANCING METHODS AND APPLICATIONS 2023; 15:5129-5138. [PMID: 37609867 DOI: 10.1039/d3ay00842h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 08/24/2023]
Abstract
Microfluidics has emerged as a powerful technology with diverse applications in microbiology, medicine, chemistry, and physics. While its potential for controlling and studying chemical reactions is well recognized, the extraction and analysis of useful chemical information generated within microfluidic devices remain challenging. This is mainly due to the limited tools available for in situ measurements of chemical reactions. In this study, we present a proof-of-concept spectIR-fluidic reactor design that combines microfluidics with Fourier transform infrared (FTIR) spectroscopy for in situ kinetic studies of fast reactions. By integrating a multi-ridge silicon attenuated total reflection (ATR) wafer into the microfluidic device, we enable multi-point measurements for precise reaction time monitoring. As such, this work establishes a validated foundation for studying fast chemical reactions using on-chip ATR-FTIR spectroscopy in a microfluidic reactor environment, which enables simultaneous monitoring of reagents, intermediates, and products using a phosphate proton transfer reaction. The spectIR-fluidic reactor platform offers customizable designs, allowing for the investigation of reactions with various time scales, and has the potential to significantly advance studies exploring reaction mechanisms and optimization.
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Affiliation(s)
- Nan Jia
- Département de Chimie, Faculté des Sciences et de Génie, Université Laval, Québec, G1V 0A6, Canada.
| | - Leon Torres de Oliveira
- Département de Chimie, Faculté des Sciences et de Génie, Université Laval, Québec, G1V 0A6, Canada.
| | - André Bégin-Drolet
- Département de Génie Mécanique, Faculté des Sciences et de Génie, Université Laval, Québec, G1V 0A6, Canada
| | - Jesse Greener
- Département de Chimie, Faculté des Sciences et de Génie, Université Laval, Québec, G1V 0A6, Canada.
- CHU de Québec, Centre de Recherche du CHU de Québec, Université Laval, Québec, G1L 3L5, Canada
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4
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Jia N, Daignault-Bouchard A, Deng T, Mayerhöfer TG, Bégin-Drolet A, Greener J. SpectIR-fluidics: completely customizable microfluidic cartridges for high sensitivity on-chip infrared spectroscopy with point-of-application studies on bacterial biofilms. LAB ON A CHIP 2023; 23:3561-3570. [PMID: 37403603 DOI: 10.1039/d3lc00388d] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/06/2023]
Abstract
We present a generalizable fabrication method for a new class of analytical devices that merges virtually any microfluidic design with high-sensitivity on-chip attenuated total reflection (ATR) sampling using any standard Fourier transform infrared (FTIR) spectrometer. Termed "spectIR-fluidics", a major design feature is the integration of a multi-groove silicon ATR crystal into a microfluidic device, compared with previous approaches in which the ATR surface served as a structural support for the entire device. This was accomplished by the design, fabrication, and aligned bonding of a highly engineered ATR sensing layer, which con```tains a seamlessly embedded ATR crystal on the channel side and an optical access port that matched the spectrometer light path characteristics at the device exterior. The refocused role of the ATR crystal as a dedicated analytical element, combined with optimized light coupling to the spectrometer, results in limits of detection as low as 540 nM for a D-glucose solution, arbitrarily complex channel features that are fully enclosed, and up to 18 world-to-chip connections. Three purpose-built spectIR-fluidic cartridges are used in a series of validation experiments followed by several point-of-application studies on biofilms from the gut microbiota of plastic-consuming insects using a small portable spectrometer.
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Affiliation(s)
- Nan Jia
- Département de chimie, Faculté des sciences et de génie, Université Laval, Québec, QC G1V 0A6, Canada.
| | - Arthur Daignault-Bouchard
- Département de génie mécanique, Faculté des sciences et de génie, Université Laval, Québec, QC G1V 0A6, Canada.
| | - Tianyang Deng
- Département de chimie, Faculté des sciences et de génie, Université Laval, Québec, QC G1V 0A6, Canada.
| | - Thomas G Mayerhöfer
- Leibniz Institute of Photonic Technology (IPHT), Albert-Einstein-Str. 9, Jena, 07745, Germany
- Institute of Physical Chemistry and Abbe Center of Photonics, Friedrich Schiller University, Helmholtzweg 4, Jena, 07743, Germany
| | - André Bégin-Drolet
- Département de génie mécanique, Faculté des sciences et de génie, Université Laval, Québec, QC G1V 0A6, Canada.
| | - Jesse Greener
- Département de chimie, Faculté des sciences et de génie, Université Laval, Québec, QC G1V 0A6, Canada.
- CHU de Québec, Centre de recherche du CHU de Québec, Université Laval, Québec, QC G1L 3L5, Canada
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5
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Borisjuk L, Horn P, Chapman K, Jakob PM, Gündel A, Rolletschek H. Seeing plants as never before. THE NEW PHYTOLOGIST 2023; 238:1775-1794. [PMID: 36895109 DOI: 10.1111/nph.18871] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2022] [Accepted: 02/06/2023] [Indexed: 05/04/2023]
Abstract
Imaging has long supported our ability to understand the inner life of plants, their development, and response to a dynamic environment. While optical microscopy remains the core tool for imaging, a suite of novel technologies is now beginning to make a significant contribution to visualize plant metabolism. The purpose of this review was to provide the scientific community with an overview of current imaging methods, which rely variously on either nuclear magnetic resonance (NMR), mass spectrometry (MS) or infrared (IR) spectroscopy, and to present some examples of their application in order to illustrate their utility. In addition to providing a description of the basic principles underlying these technologies, the review discusses their various advantages and limitations, reveals the current state of the art, and suggests their potential application to experimental practice. Finally, a view is presented as to how the technologies will likely develop, how these developments may encourage the formulation of novel experimental strategies, and how the enormous potential of these technologies can contribute to progress in plant science.
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Affiliation(s)
- Ljudmilla Borisjuk
- Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466, Seeland-Gatersleben, Germany
| | - Patrick Horn
- Department of Biological Sciences, BioDiscovery Institute, University of North Texas, Denton, TX, 76203, USA
| | - Kent Chapman
- Department of Biological Sciences, BioDiscovery Institute, University of North Texas, Denton, TX, 76203, USA
| | - Peter M Jakob
- Institute of Experimental Physics 5, University of Würzburg, Am Hubland, 97074, Würzburg, Germany
| | - Andre Gündel
- Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466, Seeland-Gatersleben, Germany
| | - Hardy Rolletschek
- Leibniz-Institute of Plant Genetics and Crop Plant Research (IPK), Corrensstrasse 3, 06466, Seeland-Gatersleben, Germany
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6
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Flaman GT, Boyle ND, Vermelle C, Morhart TA, Ramaswami B, Read S, Rosendahl SM, Wells G, Newman LP, Atkinson N, Achenbach S, Burgess IJ. Chemical Imaging of Mass Transport Near the No-Slip Interface of a Microfluidic Device using Attenuated Total Reflection-Fourier Transform Infrared Spectroscopy. Anal Chem 2023; 95:4940-4949. [PMID: 36880970 DOI: 10.1021/acs.analchem.2c04880] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/08/2023]
Abstract
Mass transport in geometrically confined environments is fundamental to microfluidic applications. Measuring the distribution of chemical species on flow requires the use of spatially resolved analytical tools compatible with microfluidic materials and designs. Here, the implementation of an attenuated total reflection-Fourier transform infrared spectroscopy (ATR-FTIR) imaging (macro-ATR) approach for chemical mapping of species in microfluidic devices is described. The imaging method is configurable between a large field of view, single-frame imaging, and the use of image stitching to build composite chemical maps. Macro-ATR is used to quantify transverse diffusion in the laminar streams of coflowing fluids in dedicated microfluidic test devices. It is demonstrated that the ATR evanescent wave, which primarily probes the fluid within ∼500 nm of the channel surface, provides accurate quantification of the spatial distribution of species in the entire microfluidic device cross section. This is the case when flow and channel conditions promote vertical concentration contours in the channel as verified by three-dimensional numeric simulations of mass transport. Furthermore, the validity of treating the mass transport problem in a simplified and faster approach using reduced dimensionality numeric simulations is described. Simplified one-dimensional simulations, for the specific parameters used herein, overestimate diffusion coefficients by a factor of approximately 2, whereas full three-dimensional simulations accurately agree with experimental results.
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Affiliation(s)
- Grace T Flaman
- Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9 Canada
| | - Nicole D Boyle
- Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9 Canada
| | - Cyprien Vermelle
- Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5A9 Canada
| | - Tyler A Morhart
- Canadian Light Source Inc., Saskatoon, Saskatchewan S7N 2V3 Canada
| | - Bdhanya Ramaswami
- Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9 Canada
| | - Stuart Read
- Canadian Light Source Inc., Saskatoon, Saskatchewan S7N 2V3 Canada
| | | | - Garth Wells
- Canadian Light Source Inc., Saskatoon, Saskatchewan S7N 2V3 Canada
| | - Liam P Newman
- Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5A9 Canada
| | - Noah Atkinson
- Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5A9 Canada
| | - Sven Achenbach
- Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5A9 Canada
| | - Ian J Burgess
- Department of Chemistry, University of Saskatchewan, Saskatoon, Saskatchewan S7N 5C9 Canada
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7
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Itani RC, Cohen MM, Tokmakoff A. Infrared compatible rapid mixer to probe millisecond chemical kinetics. THE REVIEW OF SCIENTIFIC INSTRUMENTS 2023; 94:034102. [PMID: 37012780 DOI: 10.1063/5.0121817] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2022] [Accepted: 02/06/2023] [Indexed: 06/19/2023]
Abstract
Fast microfluidic mixers are a valuable tool for studying solution-phase chemical reaction kinetics and molecular processes with spectroscopy. However, microfluidic mixers that are compatible with infrared vibrational spectroscopy have seen only limited development due to the poor infrared transparency of the current microfabrication material. We describe the design, fabrication, and characterization of CaF2-based continuous flow turbulent mixers, which are capable of measuring kinetics in the millisecond time window with infrared spectroscopy, when integrated into an infrared microscope. Kinetics measurements demonstrate the ability to resolve relaxation processes with 1 millisecond time resolution, and straightforward improvements are described that should result in sub-100 µs time-resolution.
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Affiliation(s)
- Ram C Itani
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
| | - Max Moncada Cohen
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
| | - Andrei Tokmakoff
- Department of Chemistry, James Franck Institute, and Institute for Biophysical Dynamics, The University of Chicago, Chicago, Illinois 60637, USA
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8
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9
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Sportelli MC, Kranz C, Mizaikoff B, Cioffi N. Recent advances on the spectroscopic characterization of microbial biofilms: A critical review. Anal Chim Acta 2022; 1195:339433. [DOI: 10.1016/j.aca.2022.339433] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2021] [Revised: 12/30/2021] [Accepted: 01/02/2022] [Indexed: 02/07/2023]
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10
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Konoplev G, Agafonova D, Bakhchova L, Mukhin N, Kurachkina M, Schmidt MP, Verlov N, Sidorov A, Oseev A, Stepanova O, Kozyrev A, Dmitriev A, Hirsch S. Label-Free Physical Techniques and Methodologies for Proteins Detection in Microfluidic Biosensor Structures. Biomedicines 2022; 10:207. [PMID: 35203416 PMCID: PMC8868674 DOI: 10.3390/biomedicines10020207] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2021] [Revised: 01/01/2022] [Accepted: 01/11/2022] [Indexed: 12/25/2022] Open
Abstract
Proteins in biological fluids (blood, urine, cerebrospinal fluid) are important biomarkers of various pathological conditions. Protein biomarkers detection and quantification have been proven to be an indispensable diagnostic tool in clinical practice. There is a growing tendency towards using portable diagnostic biosensor devices for point-of-care (POC) analysis based on microfluidic technology as an alternative to conventional laboratory protein assays. In contrast to universally accepted analytical methods involving protein labeling, label-free approaches often allow the development of biosensors with minimal requirements for sample preparation by omitting expensive labelling reagents. The aim of the present work is to review the variety of physical label-free techniques of protein detection and characterization which are suitable for application in micro-fluidic structures and analyze the technological and material aspects of label-free biosensors that implement these methods. The most widely used optical and impedance spectroscopy techniques: absorption, fluorescence, surface plasmon resonance, Raman scattering, and interferometry, as well as new trends in photonics are reviewed. The challenges of materials selection, surfaces tailoring in microfluidic structures, and enhancement of the sensitivity and miniaturization of biosensor systems are discussed. The review provides an overview for current advances and future trends in microfluidics integrated technologies for label-free protein biomarkers detection and discusses existing challenges and a way towards novel solutions.
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Affiliation(s)
- Georgii Konoplev
- Faculty of Electronics, Saint Petersburg Electrotechnical University “LETI”, 197376 Saint Petersburg, Russia; (D.A.); (A.S.); (O.S.); (A.K.)
| | - Darina Agafonova
- Faculty of Electronics, Saint Petersburg Electrotechnical University “LETI”, 197376 Saint Petersburg, Russia; (D.A.); (A.S.); (O.S.); (A.K.)
| | - Liubov Bakhchova
- Institute for Automation Technology, Otto-von-Guericke-University Magdeburg, 39106 Magdeburg, Germany;
| | - Nikolay Mukhin
- Faculty of Electronics, Saint Petersburg Electrotechnical University “LETI”, 197376 Saint Petersburg, Russia; (D.A.); (A.S.); (O.S.); (A.K.)
- Department of Engineering, University of Applied Sciences Brandenburg, 14770 Brandenburg an der Havel, Germany; (M.K.); (S.H.)
| | - Marharyta Kurachkina
- Department of Engineering, University of Applied Sciences Brandenburg, 14770 Brandenburg an der Havel, Germany; (M.K.); (S.H.)
| | - Marc-Peter Schmidt
- Faculty of Electrical Engineering, University of Applied Sciences Dresden, 01069 Dresden, Germany;
| | - Nikolay Verlov
- Molecular and Radiation Biophysics Division, Petersburg Nuclear Physics Institute Named by B.P. Konstantinov, National Research Centre Kurchatov Institute, 188300 Gatchina, Russia;
| | - Alexander Sidorov
- Faculty of Electronics, Saint Petersburg Electrotechnical University “LETI”, 197376 Saint Petersburg, Russia; (D.A.); (A.S.); (O.S.); (A.K.)
- Fuculty of Photonics, ITMO University, 197101 Saint Petersburg, Russia
| | - Aleksandr Oseev
- FEMTO-ST Institute, CNRS UMR-6174, University Bourgogne Franche-Comté, 25000 Besançon, France;
| | - Oksana Stepanova
- Faculty of Electronics, Saint Petersburg Electrotechnical University “LETI”, 197376 Saint Petersburg, Russia; (D.A.); (A.S.); (O.S.); (A.K.)
| | - Andrey Kozyrev
- Faculty of Electronics, Saint Petersburg Electrotechnical University “LETI”, 197376 Saint Petersburg, Russia; (D.A.); (A.S.); (O.S.); (A.K.)
| | - Alexander Dmitriev
- Department of Ecological Physiology, Federal State Budgetary Scientific Institution “Institute of Experimental Medicine” (FSBSI “IEM”), 197376 Saint Petersburg, Russia;
| | - Soeren Hirsch
- Department of Engineering, University of Applied Sciences Brandenburg, 14770 Brandenburg an der Havel, Germany; (M.K.); (S.H.)
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11
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Infrared thermospectroscopic imaging of heat and mass transfers in laminar microfluidic reactive flows. CHEMICAL ENGINEERING JOURNAL ADVANCES 2021. [DOI: 10.1016/j.ceja.2021.100166] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022] Open
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12
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Joly M, Deng T, Morhart TA, Wells G, Achenbach S, Bégin-Drolet A, Greener J. Scanning Aperture Approach for Spatially Selective ATR-FTIR Spectroscopy: Application to Microfluidics. Anal Chem 2021; 93:14076-14087. [PMID: 34636233 DOI: 10.1021/acs.analchem.1c01614] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/24/2022]
Abstract
We present a novel spectroscopy accessory that can easily convert any Fourier transform infrared (FTIR) spectrometer into a fully automated mapping and assaying system. The accessory uses a multiridge attenuated total reflection (ATR) wafer as the sensing element coupled with a moving aperture that is used to select the regions of interest on the wafer. In this demonstration, the accessory is combined with a series of parallel micropatterned channels, which are positioned co-linear with the light-coupling ridges on the opposite side of the ATR wafer. The ATR spectroscopy microfluidic assay accessory (ASMAA) was used in continuous mapping mode to scan perpendicular to the ATR ridges, revealing complex but repeatable oscillations in the spectral intensities. To understand this behavior, the light path through the optical components was simulated with consideration of the aperture position, ridge-to-channel alignment, and excitation beam profile. With this approach, the simulation reproduced the experimental mapping results and provided evidence that the measurement position and area changed with the aperture position. To demonstrate the assay mode, we obtained spectra along the centerline of individual microchannels and determined noise baselines and limits of detection.
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Affiliation(s)
- Maxime Joly
- Département de génie mécanique, Faculté des sciences et de génie, Université Laval, Québec, QC G1V 0A6, Canada
| | - Tianyang Deng
- Département de chimie, Faculté des sciences et de génie, Université Laval, Québec, QC G1V 0A6, Canada
| | - Tyler A Morhart
- Department of Chemistry, University of Saskatchewan, Saskatoon, SK S7N 5C9, Canada.,Canadian Light Source, Saskatoon, SK S7N 2V3, Canada
| | - Garth Wells
- Canadian Light Source, Saskatoon, SK S7N 2V3, Canada
| | - Sven Achenbach
- Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, SK S7N 5A9, Canada
| | - André Bégin-Drolet
- Département de génie mécanique, Faculté des sciences et de génie, Université Laval, Québec, QC G1V 0A6, Canada
| | - Jesse Greener
- Département de chimie, Faculté des sciences et de génie, Université Laval, Québec, QC G1V 0A6, Canada.,CHU de Québec, centre de recherche, Université Laval, 10 rue de l'Espinay, Québec, QC G1L 3L5, Canada
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13
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Chevalier S. Semianalytical modeling of the mass transfer in microfluidic electrochemical chips. Phys Rev E 2021; 104:035110. [PMID: 34654148 DOI: 10.1103/physreve.104.035110] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2021] [Accepted: 09/10/2021] [Indexed: 11/07/2022]
Abstract
This paper reports a mass transfer model of a reactant flowing in a large aspect ratio microfluidic chip made of a channel with electrodes on the side walls. A semianalytical solution to the two-dimensional Fickian diffusion of a reactant in a microchannel, including the electrochemical reaction at the electrode interface and the velocity profile obtained from the Navier-Stokes equations in a fully developed laminar regime, is found. The solution is written in the Laplace domain in terms of transfer functions. The proposed solution is an extension of the Lévêque approximation describing the reactant diffusion from the electrode to the middle of the microfluidic channel. The main applications of this work are the use of the obtained transfer functions for the measurement of the Faradic current density or the chemical concentration at the electrode interface. The study can also be extended to the heat transfer in microfluidic electrochemical chips (temperature or heat flux measurements at the electrode interface).
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Affiliation(s)
- Stéphane Chevalier
- Arts et Metiers Institute of Technology, I2M UMR CNRS 5295, University of Bordeaux, CNRS Esplanade des Arts et Métiers, 33405 Talence Cédex, France
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14
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Phal Y, Yeh K, Bhargava R. Design Considerations for Discrete Frequency Infrared Microscopy Systems. APPLIED SPECTROSCOPY 2021; 75:1067-1092. [PMID: 33876990 PMCID: PMC9993325 DOI: 10.1177/00037028211013372] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
Discrete frequency infrared chemical imaging is transforming the practice of microspectroscopy by enabling a diversity of instrumentation and new measurement capabilities. While a variety of hardware implementations have been realized, design considerations that are unique to infrared (IR) microscopes have not yet been compiled in literature. Here, we describe the evolution of IR microscopes, provide rationales for design choices, and catalog some major considerations for each of the optical components in an imaging system. We analyze design choices that use these components to optimize performance, under their particular constraints, while providing illustrative examples. We then summarize a framework to assess the factors that determine an instrument's performance mathematically. Finally, we provide a validation approach by enumerating performance metrics that can be used to evaluate the capabilities of imaging systems or suitability for specific intended applications. Together, the presented concepts and examples should aid in understanding available instrument configurations, while guiding innovations in design of the next generation of IR chemical imaging spectrometers.
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Affiliation(s)
- Yamuna Phal
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, USA
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, USA
| | - Kevin Yeh
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, USA
| | - Rohit Bhargava
- Department of Electrical and Computer Engineering, University of Illinois at Urbana-Champaign, Urbana, USA
- Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, Urbana, USA
- Departments of Bioengineering, Mechanical Science and Engineering, Chemical and Biomolecular Engineering, and Chemistry, University of Illinois at Urbana-Champaign, Urbana, USA
- Cancer Center at Illinois, University of Illinois at Urbana-Champaign, Urbana, USA
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15
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Microfluidics for Multiphase Mixing and Liposomal Encapsulation of Nanobioconjugates: Passive vs. Acoustic Systems. FLUIDS 2021. [DOI: 10.3390/fluids6090309] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
One of the main routes to ensure that biomolecules or bioactive agents remain active as they are incorporated into products with applications in different industries is by their encapsulation. Liposomes are attractive platforms for encapsulation due to their ease of synthesis and manipulation and the potential to fuse with cell membranes when they are intended for drug delivery applications. We propose encapsulating our recently developed cell-penetrating nanobioconjugates based on magnetite interfaced with translocating proteins and peptides with the purpose of potentiating their cell internalization capabilities even further. To prepare the encapsulates (also known as magnetoliposomes (MLPs)), we introduced a low-cost microfluidic device equipped with a serpentine microchannel to favor the interaction between the liposomes and the nanobioconjugates. The encapsulation performance of the device, operated either passively or in the presence of ultrasound, was evaluated both in silico and experimentally. The in silico analysis was implemented through multiphysics simulations with the software COMSOL Multiphysics 5.5® (COMSOL Inc., Stockholm, Sweden) via both a Eulerian model and a transport of diluted species model. The encapsulation efficiency was determined experimentally, aided by spectrofluorimetry. Encapsulation efficiencies obtained experimentally and in silico approached 80% for the highest flow rate ratios (FRRs). Compared with the passive mixer, the in silico results of the device under acoustic waves led to higher discrepancies with respect to those obtained experimentally. This was attributed to the complexity of the process in such a situation. The obtained MLPs demonstrated successful encapsulation of the nanobioconjugates by both methods with a 36% reduction in size for the ones obtained in the presence of ultrasound. These findings suggest that the proposed serpentine micromixers are well suited to produce MLPs very efficiently and with homogeneous key physichochemical properties.
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16
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Nagasaka M, Kosugi N. Soft X-ray Absorption Spectroscopy for Observing Element-specific Intermolecular Interaction in Solution Chemistry. CHEM LETT 2021. [DOI: 10.1246/cl.200938] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/27/2022]
Affiliation(s)
- Masanari Nagasaka
- Institute for Molecular Science, Myodaiji, Okazaki, Aichi 444-8585, Japan
- SOKENDAI (The Graduate University for Advanced Studies), Myodaiji, Okazaki, Aichi 444-8585, Japan
| | - Nobuhiro Kosugi
- Institute for Molecular Science, Myodaiji, Okazaki, Aichi 444-8585, Japan
- SOKENDAI (The Graduate University for Advanced Studies), Myodaiji, Okazaki, Aichi 444-8585, Japan
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17
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Hartnell D, Hollings A, Ranieri AM, Lamichhane HB, Becker T, Sylvain NJ, Hou H, Pushie MJ, Watkin E, Bambery KR, Tobin MJ, Kelly ME, Massi M, Vongsvivut J, Hackett MJ. Mapping sub-cellular protein aggregates and lipid inclusions using synchrotron ATR-FTIR microspectroscopy. Analyst 2021; 146:3516-3525. [PMID: 33881057 DOI: 10.1039/d1an00136a] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Visualising direct biochemical markers of cell physiology and disease pathology at the sub-cellular level is an ongoing challenge in the biological sciences. A suite of microscopies exists to either visualise sub-cellular architecture or to indirectly view biochemical markers (e.g. histochemistry), but further technique developments and innovations are required to increase the range of biochemical parameters that can be imaged directly, in situ, within cells and tissue. Here, we report our continued advancements in the application of synchrotron radiation attenuated total reflectance Fourier transform infrared (SR-ATR-FTIR) microspectroscopy to study sub-cellular biochemistry. Our recent applications demonstrate the much needed capability to map or image directly sub-cellular protein aggregates within degenerating neurons as well as lipid inclusions within bacterial cells. We also characterise the effect of spectral acquisition parameters on speed of data collection and the associated trade-offs between a realistic experimental time frame and spectral/image quality. Specifically, the study highlights that the choice of 8 cm-1 spectral resolutions provide a suitable trade-off between spectral quality and collection time, enabling identification of important spectroscopic markers, while increasing image acquisition by ∼30% (relative to 4 cm-1 spectral resolution). Further, this study explores coupling a focal plane array detector with SR-ATR-FTIR, revealing a modest time improvement in image acquisition time (factor of 2.8). Such information continues to lay the foundation for these spectroscopic methods to be readily available for, and adopted by, the biological science community to facilitate new interdisciplinary endeavours to unravel complex biochemical questions and expand emerging areas of study.
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Affiliation(s)
- David Hartnell
- School of Molecular and Life Sciences, Curtin University, Bentley, 6845, Western Australia. and Curtin Health Innovation Research Institute, Curtin University, Bentley, 6102, Western Australia
| | - Ashley Hollings
- School of Molecular and Life Sciences, Curtin University, Bentley, 6845, Western Australia. and Curtin Health Innovation Research Institute, Curtin University, Bentley, 6102, Western Australia
| | - Anna Maria Ranieri
- School of Molecular and Life Sciences, Curtin University, Bentley, 6845, Western Australia.
| | - Hum Bahadur Lamichhane
- School of Molecular and Life Sciences, Curtin University, Bentley, 6845, Western Australia.
| | - Thomas Becker
- School of Molecular and Life Sciences, Curtin University, Bentley, 6845, Western Australia.
| | - Nicole J Sylvain
- Division of Neurosurgery, Department of Surgery, College of Medicine, University of Saskatchewan, Saskatoon, Canada S7N 5E5
| | - Huishu Hou
- Division of Neurosurgery, Department of Surgery, College of Medicine, University of Saskatchewan, Saskatoon, Canada S7N 5E5
| | - M Jake Pushie
- Division of Neurosurgery, Department of Surgery, College of Medicine, University of Saskatchewan, Saskatoon, Canada S7N 5E5
| | - Elizabeth Watkin
- Curtin Medical School, Curtin University, Bentley, Western Australia 6845
| | - Keith R Bambery
- ANSTO - Australian Synchrotron, 800 Blackburn Road, Clayton, Victoria, 3168, Australia
| | - Mark J Tobin
- ANSTO - Australian Synchrotron, 800 Blackburn Road, Clayton, Victoria, 3168, Australia
| | - Michael E Kelly
- Division of Neurosurgery, Department of Surgery, College of Medicine, University of Saskatchewan, Saskatoon, Canada S7N 5E5
| | - Massimiliano Massi
- School of Molecular and Life Sciences, Curtin University, Bentley, 6845, Western Australia.
| | - Jitraporn Vongsvivut
- ANSTO - Australian Synchrotron, 800 Blackburn Road, Clayton, Victoria, 3168, Australia
| | - Mark J Hackett
- School of Molecular and Life Sciences, Curtin University, Bentley, 6845, Western Australia. and Curtin Health Innovation Research Institute, Curtin University, Bentley, 6102, Western Australia
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Wang H, Wang L, Janzen E, Edgar JH, Xu XG. Total Internal Reflection Peak Force Infrared Microscopy. Anal Chem 2020; 93:731-736. [DOI: 10.1021/acs.analchem.0c01176] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
- Haomin Wang
- Department of Chemistry, Lehigh University, Bethlehem, Pennsylvania 18015, United States
| | - Le Wang
- Department of Chemistry, Lehigh University, Bethlehem, Pennsylvania 18015, United States
| | - Eli Janzen
- Tim Taylor Department of Chemical Engineering, Kansas State University, Durland Hall, Manhattan, Kansas 66506, United States
| | - James H. Edgar
- Tim Taylor Department of Chemical Engineering, Kansas State University, Durland Hall, Manhattan, Kansas 66506, United States
| | - Xiaoji G. Xu
- Department of Chemistry, Lehigh University, Bethlehem, Pennsylvania 18015, United States
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19
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Le THH, Matsushita T, Ohta R, Shimoda Y, Matsui H, Kitamori T. Fabrication of Infrared-Compatible Nanofluidic Devices for Plasmon-Enhanced Infrared Absorption Spectroscopy. MICROMACHINES 2020; 11:mi11121062. [PMID: 33266007 PMCID: PMC7760999 DOI: 10.3390/mi11121062] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Revised: 11/24/2020] [Accepted: 11/27/2020] [Indexed: 12/29/2022]
Abstract
Nanofluidic devices have offered us fascinating analytical platforms for chemical and bioanalysis by exploiting unique properties of liquids and molecules confined in nanospaces. The increasing interests in nanofluidic analytical devices have triggered the development of new robust and sensitive detection techniques, especially label-free ones. IR absorption spectroscopy is one of the most powerful biochemical analysis methods for identification and quantitative measurement of chemical species in the label-free and non-invasive fashion. However, the low sensitivity and the difficulties in fabrication of IR-compatible nanofluidic devices are major obstacles that restrict the applications of IR spectroscopy in nanofluidics. Here, we realized the bonding of CaF2 and SiO2 at room temperature and demonstrated an IR-compatible nanofluidic device that allowed the IR spectroscopy in a wide range of mid-IR regime. We also performed the integration of metal-insulator-metal perfect absorber metamaterials into nanofluidic devices for plasmon-enhanced infrared absorption spectroscopy with ultrahigh sensitivity. This study also shows a proof-of-concept of the multi-band absorber by combining different types of nanostructures. The results indicate the potential of implementing metamaterials in tracking several characteristic molecular vibrational modes simultaneously, making it possible to identify molecular species in mixture or complex biological entities.
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Affiliation(s)
- Thu Hac Huong Le
- Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8654, Japan;
- Correspondence:
| | - Takumi Matsushita
- Department of Applied Chemistry, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8654, Japan;
| | - Ryoichi Ohta
- Collaborative Research Organization for Micro and Nano Multifunctional Devices (NMfD), The University of Tokyo, Tokyo 113-8654, Japan; (R.O.); (T.K.)
| | - Yuta Shimoda
- Department of Bioengineering/Electrical Engineering and Information systems, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8654, Japan; (Y.S.); (H.M.)
- Department of Bioengineering, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8654, Japan
| | - Hiroaki Matsui
- Department of Bioengineering/Electrical Engineering and Information systems, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8654, Japan; (Y.S.); (H.M.)
- Department of Bioengineering, Graduate School of Engineering, The University of Tokyo, Tokyo 113-8654, Japan
| | - Takehiko Kitamori
- Collaborative Research Organization for Micro and Nano Multifunctional Devices (NMfD), The University of Tokyo, Tokyo 113-8654, Japan; (R.O.); (T.K.)
- Institute of Nanoengineering and Microsystems iNEMS, Department of Power Mechanical Engineering, National Tsing Hua University, Hsinchu 300044, Taiwan
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20
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Kratz C, Furchner A, Sun G, Rappich J, Hinrichs K. Sensing and structure analysis by in situIR spectroscopy: from mL flow cells to microfluidic applications. JOURNAL OF PHYSICS. CONDENSED MATTER : AN INSTITUTE OF PHYSICS JOURNAL 2020; 32:393002. [PMID: 32235045 DOI: 10.1088/1361-648x/ab8523] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Accepted: 03/31/2020] [Indexed: 06/11/2023]
Abstract
In situmid-infrared (MIR) spectroscopy in liquids is an emerging field for the analysis of functional surfaces and chemical reactions. Different basic geometries exist forin situMIR spectroscopy in milliliter (mL) and microfluidic flow cells, such as attenuated total reflection (ATR), simple reflection, transmission and fiber waveguides. After a general introduction of linear opticalin situMIR techniques, the methodology of ATR, ellipsometric and microfluidic applications in single-reflection geometries is presented. Selected examples focusing on thin layers relevant to optical, electronical, polymer, biomedical, sensing and silicon technology are discussed. The development of an optofluidic platform translates IR spectroscopy to the world of micro- and nanofluidics. With the implementation of SEIRA (surface enhanced infrared absorption) interfaces, the sensitivity of optofluidic analyses of biomolecules can be improved significantly. A large variety of enhancement surfaces ranging from tailored nanostructures to metal-island film substrates are promising for this purpose. Meanwhile, time-resolved studies, such as sub-monolayer formation of organic molecules in nL volumes, become available in microscopic or laser-based set-ups. With the adaption of modern brilliant IR sources, such as tunable and broadband IR lasers as well as frequency comb sources, possible applications of far-field IR spectroscopy inin situsensing with high lateral (sub-mm) and time (sub-s) resolution are considerably extended.
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Affiliation(s)
| | | | - Guoguang Sun
- ISAS-e.V., Schwarzschildstr. 8, 12489 Berlin, Germany
| | - Jörg Rappich
- Helmholtz-Zentrum Berlin für Materialien und Energie GmbH, Kekuléstr. 5, 12489 Berlin, Germany
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21
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Bomers M, Charlot B, Barho F, Chanuel A, Mezy A, Cerutti L, Gonzalez-Posada F, Taliercio T. Microfluidic surface-enhanced infrared spectroscopy with semiconductor plasmonics for the fingerprint region. REACT CHEM ENG 2020. [DOI: 10.1039/c9re00350a] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
III–V semiconductor plasmonics enables to perform microfluidic surface-enhanced mid-IR spectroscopy and to access the so-called molecular fingerprint region from 6.7 μm to 20 μm (1500–500 cm−1).
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Affiliation(s)
- Mario Bomers
- IES
- Université de Montpellier
- CNRS
- Montpellier
- France
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22
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Nagasaka M, Yuzawa H, Takada N, Aoyama M, Rühl E, Kosugi N. Laminar flow in microfluidics investigated by spatially-resolved soft X-ray absorption and infrared spectroscopy. J Chem Phys 2019; 151:114201. [PMID: 31542036 DOI: 10.1063/1.5115191] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022] Open
Abstract
The application of soft X-ray absorption spectroscopy (XAS) to liquid cells based on microfluidics for chemical state analysis of light elements is much more difficult than hard X-ray absorption since soft X-rays cannot deeply penetrate a microfluidic cell. In this study, we have newly developed a microfluidic cell for spatially resolved XAS, where a 100 nm thick Si3N4 membrane is used for the measurement window to transmit soft X-rays for keeping the microfluidic flow at a width and depth of 50 µm. The π* peak of pyridine near the N K-edge XAS shows characteristic energy shifts near the liquid-liquid interface in a laminar flow of pyridine and water. The distributions of the molar fractions of pyridine and water near the liquid-liquid interface have been determined from the energy shifts of the π* peak probed at different geometric positions, where pyridine is mixed in the water part of the laminar flow and vice versa. The spatial distribution of both species has also been studied by infrared microscopy, using the same microfluidic setup. The present work clearly shows that these spectroscopic techniques are easily applicable to chemical and biological reactions prepared by microfluidics.
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Affiliation(s)
| | - Hayato Yuzawa
- Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan
| | - Noriko Takada
- Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan
| | - Masaki Aoyama
- Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan
| | - Eckart Rühl
- Physikalische Chemie, Freie Universität Berlin, Arnimallee 22, D-14195 Berlin, Germany
| | - Nobuhiro Kosugi
- Institute for Molecular Science, Myodaiji, Okazaki 444-8585, Japan
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23
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Jang H, Pawate AS, Bhargava R, Kenis PJA. Polymeric microfluidic continuous flow mixer combined with hyperspectral FT-IR imaging for studying rapid biomolecular events. LAB ON A CHIP 2019; 19:2598-2609. [PMID: 31259340 DOI: 10.1039/c9lc00182d] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/09/2023]
Abstract
Early reaction intermediates in protein folding, such as those resulting in β-amyloid formation due to transient misfolding, emerge within a few hundred microseconds. Here, we report a method to obtain sub-millisecond temporal resolution and molecular structural information of protein (mis-)folding events by using a microfluidic continuous-flow mixer (MCFM) in combination with Fourier transform infrared (FT-IR) imaging. The MCFMs are made out of cyclic olefin copolymer (COC) films, because this approach allows for rapid prototyping of different mixer designs. Furthermore, COC offers high IR transparency between 1500 and 2500 cm-1, thus maximizing the signal to noise ratio of the IR data obtained from a sample of interest. By combining narrow and wide channel widths in MCFM design, the platform provides fast mixing (460 μs) to induce protein (mis-)folding, and it maximizes the residence time in the observing area, so a wide range of reaction timescales can be captured in a single image. We validated the platform for its ability to induce and observe sub-millisecond processes by studying two systems: (i) the mixing of H2O and D2O and (ii) the mixing induced deprotonation of carboxylic acid. First, we observed excellent agreement between simulated and experimental data of the on-chip mixing of H2O and D2O, which verifies the distance-reaction time relationships based on simulation. Second, deprotonation of carboxylic acid by on-chip mixing with sodium hydroxide solution validates the ability of the platform to induce rapid pH jump that is needed for some biomolecular reactions. Finally, we studied the methanol-induced partial-unfolding of ubiquitin to show that our platform can be used to study biomolecular events 'on-pathway' using FT-IR imaging. We successfully extracted kinetic and structural details of the conformational changes along the channel. Our results are in agreement with prior studies that required more elaborate stopped flow approaches to acquire data for different time points. In summary, the reported method uses an easy-to-fabricate microfluidic mixer platform integrated with hyperspectral FT-IR imaging for rapid acquisition of structural details and kinetic parameters of biomolecular reactions. This approach does not need stopped flow or molecular imaging probes, as required respectively for alternative FT-IR spectroscopy and fluorescence approaches.
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Affiliation(s)
- Hyukjin Jang
- Department of Bioengineering, University of Illinois at Urbana-Champaign, 1406 W Green St, Urbana, IL, USA. and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, 405 N Mathews Ave, Urbana, IL, USA
| | - Ashtamurthy S Pawate
- Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, 600 S Mathews Ave, Urbana, IL, USA
| | - Rohit Bhargava
- Department of Bioengineering, University of Illinois at Urbana-Champaign, 1406 W Green St, Urbana, IL, USA. and Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, 600 S Mathews Ave, Urbana, IL, USA and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, 405 N Mathews Ave, Urbana, IL, USA
| | - Paul J A Kenis
- Department of Bioengineering, University of Illinois at Urbana-Champaign, 1406 W Green St, Urbana, IL, USA. and Department of Chemical and Biomolecular Engineering, University of Illinois at Urbana-Champaign, 600 S Mathews Ave, Urbana, IL, USA and Beckman Institute for Advanced Science and Technology, University of Illinois at Urbana-Champaign, 405 N Mathews Ave, Urbana, IL, USA
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Pousti M, Zarabadi MP, Abbaszadeh Amirdehi M, Paquet-Mercier F, Greener J. Microfluidic bioanalytical flow cells for biofilm studies: a review. Analyst 2019; 144:68-86. [PMID: 30394455 DOI: 10.1039/c8an01526k] [Citation(s) in RCA: 49] [Impact Index Per Article: 9.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
Bacterial biofilms are among the oldest and most prevalent multicellular life forms on Earth and are increasingly relevant in research areas related to industrial fouling, medicine and biotechnology. The main hurdles to obtaining definitive experimental results include time-varying biofilm properties, structural and chemical heterogeneity, and especially their strong sensitivity to environmental cues. Therefore, in addition to judicious choice of measurement tools, a well-designed biofilm study requires strict control over experimental conditions, more so than most chemical studies. Due to excellent control over a host of physiochemical parameters, microfluidic flow cells have become indispensable in microbiological studies. Not surprisingly, the number of lab-on-chip studies focusing on biofilms and other microbiological systems with expanded analytical capabilities has expanded rapidly in the past decade. In this paper, we comprehensively review the current state of microfluidic bioanalytical research applied to bacterial biofilms and offer a perspective on new approaches that are expected to drive continued advances in this field.
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Affiliation(s)
- Mohammad Pousti
- Département de chimie, Faculté des sciences et de génie, Université Laval, Québec City, Québec G1 V 0A6, Canada
| | - Mir Pouyan Zarabadi
- Département de chimie, Faculté des sciences et de génie, Université Laval, Québec City, Québec G1 V 0A6, Canada
| | - Mehran Abbaszadeh Amirdehi
- Département de chimie, Faculté des sciences et de génie, Université Laval, Québec City, Québec G1 V 0A6, Canada
| | - François Paquet-Mercier
- Département de chimie, Faculté des sciences et de génie, Université Laval, Québec City, Québec G1 V 0A6, Canada
| | - Jesse Greener
- Département de chimie, Faculté des sciences et de génie, Université Laval, Québec City, Québec G1 V 0A6, Canada and CHU de Quebec Research Centre, Laval University, 10 rue de l'Espinay, Quebec City, (QC) G1L 3L5, Canada
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25
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Morhart TA, Read S, Wells G, Jacobs M, Rosendahl SM, Achenbach S, Burgess IJ. Attenuated Total Reflection Fourier Transform Infrared (ATR FT-IR) Spectromicroscopy Using Synchrotron Radiation and Micromachined Silicon Wafers for Microfluidic Applications. APPLIED SPECTROSCOPY 2018; 72:1781-1789. [PMID: 29893584 DOI: 10.1177/0003702818785640] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/08/2023]
Abstract
A custom-designed optical configuration compatible with the use of micromachined multigroove internal reflection elements (μ-groove IREs) for attenuated total reflectance Fourier transform infrared (ATR FT-IR) spectroscopy and imaging applications in microfluidic devices is described. The μ-groove IREs consist of several face-angled grooves etched into a single, monolithic silicon chip. The optical configuration permits individual grooves to be addressed by focusing synchrotron sourced IR light through a 150 µm pinhole aperture, restricting the beam spot size to a dimension smaller than that of the groove walls. The effective beam spot diameter at the ATR sampling plane is determined through deconvolution of the measured detector response and found to be 70 µm. The μ-groove IREs are highly compatible with standard photolithographic techniques as demonstrated by printing a 400 µm wide channel in an SU-8 film spin-coated on the IRE surface. Attenuated total reflection FT-IR mapping as a function of sample position across the channel illustrates the potential application of this approach for rapid prototyping of microfluidic devices.
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Affiliation(s)
- Tyler A Morhart
- Department of Chemistry, University of Saskatchewan, Saskatoon, SK, Canada
| | - Stuart Read
- Canadian Light Source, Saskatoon, SK, Canada
| | - Garth Wells
- Canadian Light Source, Saskatoon, SK, Canada
| | | | | | - Sven Achenbach
- Department of Electrical and Computer Engineering, University of Saskatchewan, Saskatoon, SK, Canada
| | - Ian J Burgess
- Department of Chemistry, University of Saskatchewan, Saskatoon, SK, Canada
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26
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Pousti M, Joly M, Roberge P, Amirdehi MA, Bégin-Drolet A, Greener J. Linear Scanning ATR-FTIR for Chemical Mapping and High-Throughput Studies of Pseudomonas sp. Biofilms in Microfluidic Channels. Anal Chem 2018; 90:14475-14483. [DOI: 10.1021/acs.analchem.8b04279] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
Affiliation(s)
- Mohammad Pousti
- Département de chimie, Faculté des sciences et de génie, Université Laval, Québec, QC G1V 0A6, Canada
| | - Maxime Joly
- Département de génie mécanique, Faculté des sciences et de génie, Université Laval, Québec, QC G1V 0A6, Canada
| | - Patrice Roberge
- Département de génie mécanique, Faculté des sciences et de génie, Université Laval, Québec, QC G1V 0A6, Canada
| | | | - Andre Bégin-Drolet
- Département de génie mécanique, Faculté des sciences et de génie, Université Laval, Québec, QC G1V 0A6, Canada
| | - Jesse Greener
- Département de chimie, Faculté des sciences et de génie, Université Laval, Québec, QC G1V 0A6, Canada
- CHU de Quebec Research Centre, Laval University, 10 rue de l’Espinay, Québec, QC G1L 3L5, Canada
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27
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Solsona M, Nieuwelink A, Meirer F, Abelmann L, Odijk M, Olthuis W, Weckhuysen BM, van den Berg A. Magnetophoretic Sorting of Single Catalyst Particles. Angew Chem Int Ed Engl 2018. [DOI: 10.1002/ange.201804942] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Affiliation(s)
- Miguel Solsona
- BIOS lab on a chip groupMESA+ Institute for NanotechnologyUniversity of Twente Drienerlolaan 5 Enschede The Netherlands
| | - Anne‐Eva Nieuwelink
- Inorganic Chemistry and CatalysisDebye Institute for Nanomaterials ScienceUtrecht University Universiteitsweg 99 3584 CG Utrecht The Netherlands
| | - Florian Meirer
- Inorganic Chemistry and CatalysisDebye Institute for Nanomaterials ScienceUtrecht University Universiteitsweg 99 3584 CG Utrecht The Netherlands
| | - Leon Abelmann
- BIOS lab on a chip groupMESA+ Institute for NanotechnologyUniversity of Twente Drienerlolaan 5 Enschede The Netherlands
- KIST Europe Campus E7 Saarbrücken Germany
| | - Mathieu Odijk
- BIOS lab on a chip groupMESA+ Institute for NanotechnologyUniversity of Twente Drienerlolaan 5 Enschede The Netherlands
| | - Wouter Olthuis
- BIOS lab on a chip groupMESA+ Institute for NanotechnologyUniversity of Twente Drienerlolaan 5 Enschede The Netherlands
| | - Bert M. Weckhuysen
- Inorganic Chemistry and CatalysisDebye Institute for Nanomaterials ScienceUtrecht University Universiteitsweg 99 3584 CG Utrecht The Netherlands
| | - Albert van den Berg
- BIOS lab on a chip groupMESA+ Institute for NanotechnologyUniversity of Twente Drienerlolaan 5 Enschede The Netherlands
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28
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IR-Compatible PDMS microfluidic devices for monitoring of enzyme kinetics. Anal Chim Acta 2018; 1021:95-102. [DOI: 10.1016/j.aca.2018.03.006] [Citation(s) in RCA: 20] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2017] [Revised: 01/17/2018] [Accepted: 03/05/2018] [Indexed: 11/22/2022]
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29
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Solsona M, Nieuwelink AE, Meirer F, Abelmann L, Odijk M, Olthuis W, Weckhuysen BM, van den Berg A. Magnetophoretic Sorting of Single Catalyst Particles. Angew Chem Int Ed Engl 2018; 57:10589-10594. [PMID: 29962102 DOI: 10.1002/anie.201804942] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/27/2018] [Indexed: 01/28/2023]
Abstract
A better understanding of the deactivation processes taking place within solid catalysts is vital to design better ones. However, since inter-particle heterogeneities are more a rule than an exception, particle sorting is crucial to analyse single catalyst particles in detail. Microfluidics offers new possibilities to sort catalysts at the single particle level. Herein, we report a first-of-its-kind 3D printed magnetophoretic chip able to sort catalyst particles by their magnetic moment. Fluid catalytic cracking (FCC) particles were separated based on their Fe content. Magnetophoretic sorting shows that large Fe aggregates exist within 20 % of the FCC particles with the highest Fe content. The availability of Brønsted acid sites decreases with increasing Fe content. This work paves the way towards a high-throughput catalyst diagnostics platform to determine why specific catalyst particles perform better than others.
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Affiliation(s)
- Miguel Solsona
- BIOS lab on a chip group, MESA+ Institute for Nanotechnology, University of Twente, Drienerlolaan 5, Enschede, The Netherlands
| | - Anne-Eva Nieuwelink
- Inorganic Chemistry and Catalysis, Debye Institute for Nanomaterials Science, Utrecht University, Universiteitsweg 99, 3584, CG, Utrecht, The Netherlands
| | - Florian Meirer
- Inorganic Chemistry and Catalysis, Debye Institute for Nanomaterials Science, Utrecht University, Universiteitsweg 99, 3584, CG, Utrecht, The Netherlands
| | - Leon Abelmann
- BIOS lab on a chip group, MESA+ Institute for Nanotechnology, University of Twente, Drienerlolaan 5, Enschede, The Netherlands.,KIST Europe, Campus E7, Saarbrücken, Germany
| | - Mathieu Odijk
- BIOS lab on a chip group, MESA+ Institute for Nanotechnology, University of Twente, Drienerlolaan 5, Enschede, The Netherlands
| | - Wouter Olthuis
- BIOS lab on a chip group, MESA+ Institute for Nanotechnology, University of Twente, Drienerlolaan 5, Enschede, The Netherlands
| | - Bert M Weckhuysen
- Inorganic Chemistry and Catalysis, Debye Institute for Nanomaterials Science, Utrecht University, Universiteitsweg 99, 3584, CG, Utrecht, The Netherlands
| | - Albert van den Berg
- BIOS lab on a chip group, MESA+ Institute for Nanotechnology, University of Twente, Drienerlolaan 5, Enschede, The Netherlands
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30
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Suea-Ngam A, Srisa-Art M, Furutani Y. PDMS-Based Microfluidic Device for Infrared-Transmission Spectro-Electrochemistry. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2018. [DOI: 10.1246/bcsj.20170430] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Affiliation(s)
- Akkapol Suea-Ngam
- Institute for Chemical and Bioengineering, Department of Chemistry and Applied Biosciences, ETH Zürich, 1 Vladimir-Prelog-Weg, Zürich CH-8093, Switzerland
- Electrochemistry and Optical Spectroscopy Research Unit (EOSRU), Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand
| | - Monpichar Srisa-Art
- Electrochemistry and Optical Spectroscopy Research Unit (EOSRU), Department of Chemistry, Faculty of Science, Chulalongkorn University, Bangkok 10330, Thailand
| | - Yuji Furutani
- Department of Life and Coordination-complex Molecular Science, Biomolecular Sensing, Institute for Molecular Science, Okazaki, Aichi 444-8585, Japan
- Department of Structural Molecular Science, SOKENDAI (The Graduate Universities for Advanced Studies), Okazaki, Aichi 444-8585, Japan
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31
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Kratz C, Furchner A, Oates TWH, Janasek D, Hinrichs K. Nanoliter Sensing for Infrared Bioanalytics. ACS Sens 2018; 3:299-303. [PMID: 29405057 DOI: 10.1021/acssensors.7b00902] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Nondestructive label-free bioanalytics of microliter to nanoliter sample volumes with low analyte concentrations requires novel analytic approaches. For this purpose, we present an optofluidic platform that combines surface-enhanced in situ infrared spectroscopy with microfluidics for sensing of surface-immobilized ultrathin biomolecular films in liquid analytes. Submonolayer sensitivity down to surface densities of few ng/cm2 is demonstrated for the adsorption of the thiolate tripeptide glutathione and for the recognition of streptavidin on a biotinylated enhancement substrate. Nonfunctionalized and functionalized metal island films on planar oxidized silicon substrates are used for signal enhancement with quantifiable enhancement properties. A single-reflection geometry at an incidence angle below the attenuated-total-reflection (ATR) regime is used with ordinary planar, IR-transparent windows. The geometry circumvents the strong IR absorption of common polymer materials and of aqueous environments in the IR fingerprint region. This practice enables straightforward quantitative analyses of, e.g., adsorption kinetics as well as chemical and structural properties in dependence of external stimuli.
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Affiliation(s)
- Christoph Kratz
- Leibniz-Institut für Analytische Wissenschaften − ISAS − e.V., Schwarzschildstr. 8, 12489 Berlin, Germany
| | - Andreas Furchner
- Leibniz-Institut für Analytische Wissenschaften − ISAS − e.V., Schwarzschildstr. 8, 12489 Berlin, Germany
| | - Thomas W. H. Oates
- Leibniz-Institut für Analytische Wissenschaften − ISAS − e.V., Schwarzschildstr. 8, 12489 Berlin, Germany
| | - Dirk Janasek
- Leibniz-Institut für Analytische Wissenschaften − ISAS − e.V., Otto-Hahn-Str. 6b, 44227 Dortmund, Germany
| | - Karsten Hinrichs
- Leibniz-Institut für Analytische Wissenschaften − ISAS − e.V., Schwarzschildstr. 8, 12489 Berlin, Germany
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32
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Sim JY, Ahn CG, Jeong EJ, Kim BK. In vivo Microscopic Photoacoustic Spectroscopy for Non-Invasive Glucose Monitoring Invulnerable to Skin Secretion Products. Sci Rep 2018; 8:1059. [PMID: 29348411 PMCID: PMC5773698 DOI: 10.1038/s41598-018-19340-y] [Citation(s) in RCA: 66] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2017] [Accepted: 12/27/2017] [Indexed: 01/12/2023] Open
Abstract
Photoacoustic spectroscopy has been shown to be a promising tool for non-invasive blood glucose monitoring. However, the repeatability of such a method is susceptible to changes in skin condition, which is dependent on hand washing and drying due to the high absorption of infrared excitation light to the skin secretion products or water. In this paper, we present a method to meet the challenges of mid-infrared photoacoustic spectroscopy for non-invasive glucose monitoring. By obtaining the microscopic spatial information of skin during the spectroscopy measurement, the skin region where the infrared spectra is insensitive to skin condition can be locally selected, which enables reliable prediction of the blood glucose level from the photoacoustic spectroscopy signals. Our raster-scan imaging showed that the skin condition for in vivo spectroscopic glucose monitoring had significant inhomogeneities and large variability in the probing area where the signal was acquired. However, the selective localization of the probing led to a reduction in the effects of variability due to the skin secretion product. Looking forward, this technology has broader applications not only in continuous glucose monitoring for diabetic patient care, but in forensic science, the diagnosis of malfunctioning sweat pores, and the discrimination of tumors extracted via biopsy.
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Affiliation(s)
- Joo Yong Sim
- Bio-Medical IT Convergence Research Department, Electronics and Telecommunications Research Institute, Daejeon, 34129, Korea
| | - Chang-Geun Ahn
- Bio-Medical IT Convergence Research Department, Electronics and Telecommunications Research Institute, Daejeon, 34129, Korea
| | - Eun-Ju Jeong
- Bio-Medical IT Convergence Research Department, Electronics and Telecommunications Research Institute, Daejeon, 34129, Korea
| | - Bong Kyu Kim
- Bio-Medical IT Convergence Research Department, Electronics and Telecommunications Research Institute, Daejeon, 34129, Korea.
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33
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Glotz G, Kappe CO. Design and construction of an open source-based photometer and its applications in flow chemistry. REACT CHEM ENG 2018. [DOI: 10.1039/c8re00070k] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022]
Abstract
An inexpensive and easy to build photometer using a movable measuring cell for flow chemistry applications was designed with temporal resolution down to 1 ms.
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Affiliation(s)
- Gabriel Glotz
- Center for Continuous Flow Synthesis and Processing (CC FLOW)
- Research Center Pharmaceutical Engineering GmbH (RCPE)
- Graz
- Austria
- Institute of Chemistry
| | - C. Oliver Kappe
- Center for Continuous Flow Synthesis and Processing (CC FLOW)
- Research Center Pharmaceutical Engineering GmbH (RCPE)
- Graz
- Austria
- Institute of Chemistry
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34
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Swithenbank M, Burnett AD, Russell C, Li LH, Davies AG, Linfield EH, Cunningham JE, Wood CD. On-Chip Terahertz-Frequency Measurements of Liquids. Anal Chem 2017; 89:7981-7987. [DOI: 10.1021/acs.analchem.7b01235] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
Affiliation(s)
- Matthew Swithenbank
- School
of Electronic and Electrical Engineering, and ‡School of Chemistry, University of Leeds, Leeds LS2 9JT, U.K
| | - Andrew D. Burnett
- School
of Electronic and Electrical Engineering, and ‡School of Chemistry, University of Leeds, Leeds LS2 9JT, U.K
| | - Christopher Russell
- School
of Electronic and Electrical Engineering, and ‡School of Chemistry, University of Leeds, Leeds LS2 9JT, U.K
| | - Lianhe H. Li
- School
of Electronic and Electrical Engineering, and ‡School of Chemistry, University of Leeds, Leeds LS2 9JT, U.K
| | - Alexander Giles Davies
- School
of Electronic and Electrical Engineering, and ‡School of Chemistry, University of Leeds, Leeds LS2 9JT, U.K
| | - Edmund H. Linfield
- School
of Electronic and Electrical Engineering, and ‡School of Chemistry, University of Leeds, Leeds LS2 9JT, U.K
| | - John E. Cunningham
- School
of Electronic and Electrical Engineering, and ‡School of Chemistry, University of Leeds, Leeds LS2 9JT, U.K
| | - Christopher D. Wood
- School
of Electronic and Electrical Engineering, and ‡School of Chemistry, University of Leeds, Leeds LS2 9JT, U.K
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35
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Groves LM, Schotten C, Beames J, Platts JA, Coles SJ, Horton PN, Browne DL, Pope SJA. From Ligand to Phosphor: Rapid, Machine-Assisted Synthesis of Substituted Iridium(III) Pyrazolate Complexes with Tuneable Luminescence. Chemistry 2017; 23:9407-9418. [DOI: 10.1002/chem.201701551] [Citation(s) in RCA: 21] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/07/2017] [Indexed: 12/12/2022]
Affiliation(s)
- Lara M. Groves
- School of Chemistry, Main Building, Park Place; Cardiff University; Cardiff CF10 3AT UK
| | - Christiane Schotten
- School of Chemistry, Main Building, Park Place; Cardiff University; Cardiff CF10 3AT UK
| | - Joseph Beames
- School of Chemistry, Main Building, Park Place; Cardiff University; Cardiff CF10 3AT UK
| | - James A. Platts
- School of Chemistry, Main Building, Park Place; Cardiff University; Cardiff CF10 3AT UK
| | - Simon J. Coles
- UK National Crystallographic Service, Chemistry; University of Southampton, Highfield; Southampton SO17 1BJ UK
| | - Peter N. Horton
- UK National Crystallographic Service, Chemistry; University of Southampton, Highfield; Southampton SO17 1BJ UK
| | - Duncan L. Browne
- School of Chemistry, Main Building, Park Place; Cardiff University; Cardiff CF10 3AT UK
| | - Simon J. A. Pope
- School of Chemistry, Main Building, Park Place; Cardiff University; Cardiff CF10 3AT UK
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36
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Sriram KK, Nayak S, Pengel S, Chou CF, Erbe A. 10 nm deep, sub-nanoliter fluidic nanochannels on germanium for attenuated total reflection infrared (ATR-IR) spectroscopy. Analyst 2017; 142:273-278. [DOI: 10.1039/c6an01699e] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
Nanoslits with a depth of ∼10 nm were manufactured on a germanium internal reflection element for attenuated internal reflection infrared spectroscopy.
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Affiliation(s)
| | - Simantini Nayak
- Max-Planck-Institut für Eisenforschung GmbH
- 40237 Düsseldorf
- Germany
| | - Stefanie Pengel
- Max-Planck-Institut für Eisenforschung GmbH
- 40237 Düsseldorf
- Germany
| | - Chia-Fu Chou
- Institute of Physics
- Academia Sinica
- Taiwan
- Research Centre for Applied Sciences
- Academia Sinica
| | - Andreas Erbe
- Max-Planck-Institut für Eisenforschung GmbH
- 40237 Düsseldorf
- Germany
- Department of Materials Science and Engineering
- NTNU
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37
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Loutherback K, Birarda G, Chen L, Holman HYN. Microfluidic approaches to synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectral microscopy of living biosystems. Protein Pept Lett 2016; 23:273-82. [PMID: 26732243 PMCID: PMC4997923 DOI: 10.2174/0929866523666160106154035] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/01/2015] [Revised: 10/30/2015] [Accepted: 01/05/2016] [Indexed: 02/07/2023]
Abstract
A long-standing desire in biological and biomedical sciences is to be able to probe cellular chemistry as biological processes are happening inside living cells. Synchrotron radiation-based Fourier transform infrared (SR-FTIR) spectral microscopy is a label-free and nondestructive analytical technique that can provide spatiotemporal distributions and relative abundances of biomolecules of a specimen by their characteristic vibrational modes. Despite great progress in recent years, SR-FTIR imaging of living biological systems remains challenging because of the demanding requirements on environmental control and strong infrared absorption of water. To meet this challenge, microfluidic devices have emerged as a method to control the water thickness while providing a hospitable environment to measure cellular processes and responses over many hours or days. This paper will provide an overview of microfluidic device development for SR-FTIR imaging of living biological systems, provide contrast between the various techniques including closed and open-channel designs, and discuss future directions of development within this area. Even as the fundamental science and technological demonstrations develop, other ongoing issues must be addressed; for example, choosing applications whose experimental requirements closely match device capabilities, and developing strategies to efficiently complete the cycle of development. These will require imagination, ingenuity and collaboration.
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Affiliation(s)
| | | | | | - Hoi-Ying N Holman
- Berkeley Synchrotron Infrared Structural Biology Program, Lawrence Berkeley National Laboratory, Berkeley, CA, USA.
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38
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39
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Zhang L, Lohrasbi M, Tumuluri U, Chuang SSC. Asymmetric Hydrogenation of α-Amino Ester Probed by FTIR Spectroscopy. Org Process Res Dev 2016. [DOI: 10.1021/acs.oprd.6b00222] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Long Zhang
- Department
of Polymer Science, The University of Akron, Akron, Ohio 44325-3909, United States
| | - Mehdi Lohrasbi
- Department
of Chemical and Biomolecular Engineering, The University of Akron, Akron, Ohio 44325-3906, United States
| | - Uma Tumuluri
- Department
of Chemical and Biomolecular Engineering, The University of Akron, Akron, Ohio 44325-3906, United States
| | - Steven S. C. Chuang
- Department
of Polymer Science, The University of Akron, Akron, Ohio 44325-3909, United States
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40
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41
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Sans V, Cronin L. Towards dial-a-molecule by integrating continuous flow, analytics and self-optimisation. Chem Soc Rev 2016; 45:2032-43. [PMID: 26815081 PMCID: PMC6057606 DOI: 10.1039/c5cs00793c] [Citation(s) in RCA: 125] [Impact Index Per Article: 15.6] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]
Abstract
The employment of continuous-flow platforms for synthetic chemistry is becoming increasingly popular in research and industrial environments. Integrating analytics in-line enables obtaining a large amount of information in real-time about the reaction progress, catalytic activity and stability, etc. Furthermore, it is possible to influence the reaction progress and selectivity via manual or automated feedback optimisation, thus constituting a dial-a-molecule approach employing digital synthesis. This contribution gives an overview of the most significant contributions in the field to date.
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Affiliation(s)
- Victor Sans
- Department of Chemical and Environmental Engineering, University of Nottingham, NG7 2RD, UK.
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42
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Ewing AV, Clarke GS, Kazarian SG. Attenuated total reflection-Fourier transform infrared spectroscopic imaging of pharmaceuticals in microfluidic devices. BIOMICROFLUIDICS 2016; 10:024125. [PMID: 27158293 PMCID: PMC4841796 DOI: 10.1063/1.4946867] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/05/2016] [Accepted: 04/04/2016] [Indexed: 05/14/2023]
Abstract
The poor aqueous solubility of many active pharmaceutical ingredients presents challenges for effective drug delivery. In this study, the combination of attenuated total reflection (ATR)-FTIR spectroscopic imaging with specifically designed polydimethylsiloxane microfluidic devices to study drug release from pharmaceutical formulations has been developed. First, the high-throughput analysis of the dissolution of micro-formulations studied under flowing conditions has been introduced using a model formulation of ibuprofen and polyethylene glycol. The behaviour and release of the drug was monitored in situ under different pH conditions. In contrast to the neutral solution, where both the drug and excipient dissolved at a similar rate, structural change from the molecularly dispersed to a crystalline form of ibuprofen was characterised in the obtained spectroscopic images and the corresponding ATR-FTIR spectra for the experiments carried out in the acidic medium. Further investigations into the behaviour of the drug after its release from formulations (i.e., dissolved drug) were also undertaken. Different solutions of sodium ibuprofen dissolved in a neutral medium were studied upon contact with acidic conditions. The phase transition from a dissolved species of sodium ibuprofen to the formation of solid crystalline ibuprofen was revealed in the microfluidic channels. This innovative approach could offer a promising platform for high-throughput analysis of a range of micro-formulations, which are of current interest due to the advent of 3D printed pharmaceutical and microparticulate delivery systems. Furthermore, the ability to study dissolved drug in solution under flowing conditions can be useful for the studies of the diffusion of drugs into tissues or live cells.
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Affiliation(s)
- Andrew V Ewing
- Department of Chemical Engineering, Imperial College London , London SW7 2AZ, United Kingdom
| | - Graham S Clarke
- Bristol-Myers Squibb , Reeds Lane, Moreton, Wirral, Merseyside CH46 1QW, United Kingdom
| | - Sergei G Kazarian
- Department of Chemical Engineering, Imperial College London , London SW7 2AZ, United Kingdom
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43
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Srisa-Art M, Furutani Y. Simple and Rapid Fabrication of PDMS Microfluidic Devices Compatible with FTIR Microspectroscopy. BULLETIN OF THE CHEMICAL SOCIETY OF JAPAN 2016. [DOI: 10.1246/bcsj.20150357] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Monpichar Srisa-Art
- Chromatography and Separation Research Unit (ChSRU), Department of Chemistry, Faculty of Science, Chulalongkorn University
- Electrochemistry and Optical Spectroscopy Research Unit (EOSRU), Department of Chemistry, Faculty of Science, Chulalongkorn University
| | - Yuji Furutani
- Department of Life and Coordination-Complex Molecular Science, Institute for Molecular Science
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44
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Perro A, Lebourdon G, Henry S, Lecomte S, Servant L, Marre S. Combining microfluidics and FT-IR spectroscopy: towards spatially resolved information on chemical processes. REACT CHEM ENG 2016. [DOI: 10.1039/c6re00127k] [Citation(s) in RCA: 62] [Impact Index Per Article: 7.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]
Abstract
This review outlines the combination of infrared spectroscopy and continuous microfluidic processes.
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Affiliation(s)
- Adeline Perro
- Institut des Sciences Moléculaires
- Université de Bordeaux—CNRS
- 33405 Talence
- France
| | - Gwenaelle Lebourdon
- Institut des Sciences Moléculaires
- Université de Bordeaux—CNRS
- 33405 Talence
- France
| | - Sarah Henry
- Chimie et Biologie des Membranes et des Nanoobjets
- Université de Bordeaux —CNRS
- 33607 Pessac
- France
| | - Sophie Lecomte
- Chimie et Biologie des Membranes et des Nanoobjets
- Université de Bordeaux —CNRS
- 33607 Pessac
- France
| | - Laurent Servant
- Institut des Sciences Moléculaires
- Université de Bordeaux—CNRS
- 33405 Talence
- France
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45
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Lehmkuhl B, Noblitt SD, Krummel AT, Henry CS. Fabrication of IR-transparent microfluidic devices by anisotropic etching of channels in CaF2. LAB ON A CHIP 2015; 15:4364-4368. [PMID: 26450455 DOI: 10.1039/c5lc00759c] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/05/2023]
Abstract
A simple fabrication method for generating infrared (IR) transparent microfluidic devices using etched CaF2 is demonstrated. To etch microfluidic channels, a poly(dimethylsiloxane) (PDMS) microfluidic device was reversibly sealed on a CaF2 plate and acid was pumped through the channel network to perform anisotropic etching of the underlying CaF2 surface. To complete the CaF2 microfluidic device, another CaF2 plate was sealed over the etched channel using a 700 nm thick layer of PDMS adhesive. The impact of different acids and their concentrations on etching was studied, with HNO3 giving the best results in terms of channel roughness and etch rates. Etch rate was determined at etching times ranging from 4-48 hours and showed a linear correlation with etching time. The IR transparency of the CaF2 device was established using a Fourier Transform IR microscope and showed that the device could be used in the mid-IR region. Finally, utility of the device was demonstrated by following the reaction of N-methylacetamide and D2O, which results in an amide peak shift to 1625 cm(-1) from 1650 cm(-1), using an FTIR microscope.
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Affiliation(s)
- Brynson Lehmkuhl
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523-1872, USA.
| | - Scott D Noblitt
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523-1872, USA.
| | - Amber T Krummel
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523-1872, USA.
| | - Charles S Henry
- Department of Chemistry, Colorado State University, Fort Collins, Colorado 80523-1872, USA.
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46
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Wang Z, Voicu D, Tang L, Li W, Kumacheva E. Microfluidic studies of polymer adsorption in flow. LAB ON A CHIP 2015; 15:2110-2116. [PMID: 25828631 DOI: 10.1039/c5lc00241a] [Citation(s) in RCA: 9] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/04/2023]
Abstract
Adsorption of polymers from solutions moving past solid or liquid surfaces controls a broad range of phenomena in science, technology, and medicine. In the present work, a microfluidic methodology was developed to study polymer adsorption in flow under well-defined conditions by integrating an attenuated total reflection-Fourier transform infrared (ATR-FTIR) spectrometer with a microfluidic device. Polymer adsorption in flow using exemplary polyelectrolytes such as polystyrene sulfonate and polyacrylic acid was studied under varying flow rates, polymer concentrations, pH values, and ionic strengths of the solution. Furthermore, the microfluidic platform was utilized to study layer-by-layer adsorption of alternating anionic and cationic polyelectrolytes such as polyacrylic acid and polyallylamine hydrochloride. The proposed methodology paves the way for studies of in-flow adsorption of biologically relevant molecules, which would mimic processes occurring in the cardiovascular microcirculation system.
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Affiliation(s)
- Zhaoyi Wang
- Department of Chemistry, University of Toronto, 80 Saint George street, Toronto, Ontario, Canada M5S 3H6.
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47
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Fagaschewski J, Sellin D, Wiedenhöfer C, Bohne S, Trieu HK, Hilterhaus L. Spatially resolved in situ determination of reaction progress using microfluidic systems and FT-IR spectroscopy as a tool for biocatalytic process development. Bioprocess Biosyst Eng 2015; 38:1399-405. [DOI: 10.1007/s00449-015-1381-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/15/2014] [Accepted: 02/20/2015] [Indexed: 11/29/2022]
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48
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Cartier CA, Drews AM, Bishop KJM. Microfluidic mixing of nonpolar liquids by contact charge electrophoresis. LAB ON A CHIP 2014; 14:4230-4236. [PMID: 25190290 DOI: 10.1039/c4lc00811a] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
We present a simple and effective ratcheted microfluidic mixer that uses contact charge electrophoresis (CCEP) of a micron-scale particle to rapidly mix nonpolar liquids. CCEP combines contact charging and electrostatic actuation to drive the continuous oscillatory motion of a conductive particle between two electrodes subject to a constant (DC) voltage. We show how this oscillatory motion can be harnessed to mix laminar flows by using dielectric "ramps" to direct the particle along non-reciprocal, orbital trajectories, which repeatedly stretch and fold the flowing streams. Complete mixing requires that the speed of the particle is much larger than the fluid velocity such that the particle completes many orbits as the fluid flows through the mixing region. The extent of mixing also depends strongly on the size of the particle and the shape of its trajectory; effective mixers relied on larger particles (comparable to the size of the channel) moving along non-reciprocal orbits. While the present study uses mineral oil as a convenient nonpolar liquid, we also screened fifteen common solvents to determine the applicability of CCEP for mixing other organic liquids. Owing to its simple design and low power requirements (~100 nW), the orbital mixer presented here demonstrates the utility and versatility of ratcheted electrostatic actuation in powering active microfluidic operations.
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Affiliation(s)
- Charles A Cartier
- Department of Chemical Engineering, The Pennsylvania State University, University Park, PA 16802, USA.
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49
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Luther SK, Will S, Braeuer A. Phase-specific Raman spectroscopy for fast segmented microfluidic flows. LAB ON A CHIP 2014; 14:2910-2913. [PMID: 24920388 DOI: 10.1039/c4lc00428k] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
An intensifier based Raman measuring strategy is introduced which allows for a phase-specific signal detection of one single phase in segmented flows at droplet generation frequencies of potentially up to several kHz.
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Affiliation(s)
- S K Luther
- Lehrstuhl für Technische Thermodynamik (LTT) and Erlangen Graduate School in Advanced Optical Technologies (SAOT), Friedrich-Alexander Universität Erlangen-Nürnberg (FAU), Erlangen, Germany.
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Unger M, Ozaki Y, Pfeifer F, Siesler HW. 2DCOS and PCMW2D analyses of FT-IR/ATR and FT-NIR spectra monitoring the deuterium/hydrogen exchange in liquid D2O. J Mol Struct 2014. [DOI: 10.1016/j.molstruc.2014.02.018] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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