Characterization of neutral metal hydride-hydroxide hydrogen-bonded clusters HMOH(H2O)2 (M = Al and Ga)

Metal hydride-hydroxide hydrogen-bonded clusters HMOH(H2O)n are key intermediates in the reactions of metals with water. However, characterizing the structure of such neutral clusters is a challenging experimental goal due to the difficulty of size selection. Here, neutral HMOH(H2O)2 (M = Al and Ga) clusters were prepared by using a laser-vaporization source and characterized by size-specific infrared-vacuum ultraviolet spectroscopy combined with quantum chemical calculations and ab initio molecular dynamics simulations. The HMOH(H2O)2 (M = Al and Ga) clusters were found to have intriguing hydrogen-bonded network structures. The results indicate that the formation of HMOH(H2O)2 (M = Al and Ga) is both thermodynamically exothermic and kinetically facile in the gas phase. The present system serves as a model for capturing key intermediates in metal-water reactions and also opens up new avenues for systematic studies of a large variety of reactions between neutral metal atoms/clusters and small molecules.

Development of Nontargeted Workflow of Occupational Exposure by Infrared Ion Spectroscopy and Silicone Wristbands' Passive Sampling

A new approach using orthogonal analytical techniques is developed for chemical identification. High resolution mass spectrometry and infrared ion spectroscopy are applied through a 5-level confidence paradigm to demonstrate the effectiveness of nontargeted workflow for the identification of hazardous organophosphates. Triphenyl phosphate is used as a surrogate organophosphate for occupational exposure, and silicone wristbands are used to represent personal samplers. Spectral data of a target compound is combined with spectral data of the sodium adduct and quantum chemical calculations to achieve a confirmed identification. Here, we demonstrate a nontargeted workflow that identifies organophosphate exposure and provides a mechanism for selecting validated methods for quantitative analyses.

The solvation of SOH group in hydrated HSO4−(H2O)n clusters

The S=O stretching and SOH bending peaks in the vibrational spectra of HSO4−(H2O) n, with n up to 6, are analyzed by both harmonic analysis and ab initio molecular dynamics simulation. The SOH bending mode is found to be much more sensitive to the extent of hydration and to the fluctuation of hydrogen bonds than the S=O stretching mode. The SOH donor hydrogen bond is gradually stabilized by n = 4, and further shortened up to n = 6, which is the key factor to understand the trend of evolution observed in the infrared multiple photon dissociation spectra.

Molecular vibrational spectral simulation connects theoretical cluster structure identification and vibrational spectral evidence

Structure identification of molecular clusters has long been a fundamental and challenging issue for cluster science. The traditional theoretical optimization on the potential energy surface heavily depends on the levels of theory and sometimes diverse identifications were reported. A solution to these disputations is to reinspect the theoretical results with the experimental data such as vibrational predissociation spectra with high sensitivity to the molecular cluster structures. Herein, the combination of global low-lying structure search and vibrational predissociation spectral simulation is proposed as an accurate and reliable approach for cluster structure identification, by which the assignments can be validated using experimental measurements. The qualitative agreement between simulated and measured vibrational spectra lends solid experimental evidence to the assignment of the cluster structures. Taking NH₄⁺(H₂O)_n (n = 2-4) as an example, we have unambiguously identified their structures and directly demonstrated the coexistence of two NH₄⁺(H₂O)₄ isomers (with 3 and 4 water molecules directly linked to NH₄⁺, respectively), which were debatable in previous studies. The developed methods would pave the way to the structure determination of the molecular clusters.

Evolution of the linker in microhydrated hydrogen dinitrate anions: From H+ to H5 O2. J Comput Chem 2021;42:1514-1525. [PMID: 33990989 DOI: 10.1002/jcc.26560] [Citation(s) in RCA: 0] [Impact Index Per Article: 0]

Hydrogen dinitrate anion, HNO₃ (NO₃ ^- ), is a proton-bound dimer with a very strong hydrogen bond. By employing ab initio molecular dynamics (AIMD) method, we studied the effects of the proton transfer and the rotation of the nitrates on the vibrational profiles of HNO₃ (NO₃ ^- )(H₂ O)_n (n = 0-2). The AIMD results indicate that the structure of the n = 0 cluster is very flexible, even though its hydrogen bond is quite strong. Significant rotations around the hydrogen bond and frequent transfers of proton from HNO₃ to NO₃ ^- are observed in AIMD simulations. Dynamic changes are therefore an important factor in understanding the broadening of vibrational features. For n = 1, the extent of structural fluctuation increases further, as H₂ O could move around the anion while the HNO₃ (NO₃ ^- ) core also goes through structural changes. Its vibrational spectrum can be understood as a mixture of many isomers visited during AIMD simulations. By n = 2, the structure is stabilized around one isomer, with the linker between the two nitrates being H₅ O₂ ⁺ , rather than H⁺ . Due to strong hydrogen bonds between nitrates and water molecules, this H₅ O₂ ⁺ takes the extraordinary structure with the H⁺ localized on one H₂ O, rather than being shared. While this novel structure is stable during AIMD simulations, the dynamic fluctuations in hydrogen bond distances still produce significant broadening in its vibrational profile.

Vibrational Signature of Dynamic Coupling of a Strong Hydrogen Bond

Elucidating the dynamic couplings of hydrogen bonds remains an important and challenging goal for spectroscopic studies of bulk systems, because their vibrational signatures are masked by the collective effects of the fluctuation of many hydrogen bonds. Here we utilize size-selected infrared spectroscopy based on a tunable vacuum ultraviolet free electron laser to unmask the vibrational signatures for the dynamic couplings in neutral trimethylamine-water and trimethylamine-methanol complexes, as microscopic models with only one single hydrogen bond holding two molecules. Surprisingly broad progression of OH stretching peaks with distinct intensity modulation over ∼700 cm^-1 is observed for trimethylamine-water, while the dramatic reduction of this progression in the trimethylamine-methanol spectrum offers direct experimental evidence for the dynamic couplings. State-of-the-art quantum mechanical calculations reveal that such dynamic couplings are originated from strong Fermi resonance between the stretches of hydrogen-bonded OH and several motions of the solvent water/methanol, such as translation, rocking, and bending, which are significant in various solvated complexes commonly found in atmospheric and biological systems.

Vibrational spectroscopy of the hexahydrated sulfate dianion revisited: role of isomers and anharmonicities

We report on the gas phase vibrational spectroscopy of the hexahydrated sulfate dianion, SO42-(H2O)6, and its fully deuterated isotopologue, SO42-(D2O)6, using infrared photodissociation (IRPD) spectroscopy of the D2-tagged dianions in combination with density-functional-theory calculations on minimum-energy structures as well as finite temperature ab initio molecular dynamics (AIMD) simulations. The IRPD spectra were recorded at an ion trap temperature of 12 K and in the spectral range from 650 to 3800 cm-1, covering the intramolecular modes of the solvent (OH/OD stretches and H2O/D2O bends) at higher energies, those of the solute (sulfate stretches) at intermediate energies and the intermolecular solute librational modes at the lowest energies. Isomer-specific double resonance in combination with messenger-tag dependent IRPD spectra show that only a single isomer is contributing significantly and that this isomer is not the highly symmetric Td but rather the lower symmetry C3 isomer. Temperature-dependent IR multiple photon dissociation spectra of bare SO42-(H2O)6 suggest that the C3 isomer remains the most stable one up to 200 K. The AIMD simulations reveal that the IRPD spectra can only be fully understood when anharmonic effects as well as entropy-driven hydrogen bond network fluctuations are considered.

Size-Dependent Formation of an Ion Pair in HSO4-(H2O) n: A Molecular Model for Probing the Microsolvation of Acid Dissociation

With a p K_a of 2.0, HSO₄^- is not a strong acid as its dissociation percentage is only ∼10% in a solution of 1 M. However, our ab initio molecular dynamics and density functional theory calculations show that acid dissociation in the hydrate clusters, HSO₄^-(H₂O) _n, is quite facile at moderate sizes. It starts at around n = 12 and is completed by n = 16 when the energetics becomes very favorable. The dissociation explains the significant broadening at n = 16 in the S═O stretching region of the previously reported infrared photodissociation spectra for HSO₄^-(H₂O) _n as the solvation shell is tightened around the sulfate dianion and the proton. More importantly, HSO₄^-(H₂O) _n should provide an ideal model to probe the molecular details involved in an acid dissociation process.

Infrared photodissociation spectroscopy of ion-radical networks in cationic dimethylamine complexes

Infrared photodissociation spectroscopy was employed to establish the general trends in the stepwise growth motif of cationic dimethylamine (DMA)n+ (n = 4-13) complexes. Electronic structure calculations were performed to identify the structure of the low-lying isomers and to assign the observed spectral features. The results showed the preference of the formation of the proton-transferred (CH3)2NH2+ ion core. The (CH3)2NH2+-[(CH3)2N] ion-radical pair contact and the ion-radical separated pair could coexist at n = 4. The [(CH3)2N] radical is separated from the (CH3)2NH2+ ion core by one DMA molecule at n = 4-6 and by two or more DMA molecules in the larger clusters. This suggests that the (CH3)2NH2+-[(CH3)2N] ion-radical contact pair is not stable in the subsequent radiation-induced processes of DMA, and the [(CH3)2N] radical is released from the charged site in the cationic DMA networks.

Solvation effects on the N–O and O–H stretching modes in hydrated NO3−(H2O)n clusters

Ab initio molecular dynamics simulations reveal the solvation effects on the N–O and O–H stretching modes of NO₃⁻(H₂O)_n.

Solvation effects on the vibrational modes in hydrated bicarbonate clusters

Harmonic analysis and ab initio molecular dynamics simulations reveal the solvation effects on the vibrational modes of HCO₃⁻(H₂O)_n.

Structures and energetics of hydrated deprotonated cis-pinonic acid anion clusters and their atmospheric relevance

Pinonic acid, a C₁₀-monocarboxylic acid with a hydrophilic –CO₂H group and a hydrophobic hydrocarbon backbone, is a key intermediate oxidation product of α-pinene – an important monoterpene compound in biogenic emission processes that influences the atmosphere.

Probing the microhydration of metal carbonyls: a photoelectron velocity-map imaging spectroscopic and theoretical study of Ni(CO)3(H2O)n. Phys Chem Chem Phys 2016;18:26719-26724. [PMID: 27711570 DOI: 10.1039/c6cp05035b]

A series of microhydrated nickel carbonyls, Ni(CO)₃(H₂O)_n^- (n = 0-4), are prepared via a laser vaporization supersonic cluster source in the gas phase and identified by mass-selected photoelectron velocity-map imaging spectroscopy and quantum chemical calculations. Vertical detachment energies for the n = 1-4 anions are measured from the photoelectron spectra to be 1.429 ± 0.103, 1.698 ± 0.090, 1.887 ± 0.080, and 2.023 ± 0.074 eV, respectively. The C-O stretching vibrational frequencies in the corresponding neutral clusters are determined to be 1968, 1950, 1945, and 1940 cm^-1 for n = 1-4, respectively, which are characteristic of terminal CO. It is determined that the hydrogen atom of the first water molecule is bound to the nickel center. Addition of a second water molecule prefers solvation at the carbonyl terminal. Spectroscopy combined with theory suggests that the solvation of nickel tricarbonyl is dominated by a water-ring network. The present findings would have important implications for the fundamental understanding of the multifaceted mechanisms of the multibody interaction of water and carbon monoxide with transition metals.

IR spectrum of the protonated neurotransmitter 2-phenylethylamine: dispersion and anharmonicity of the NH3(+)-π interaction

The structure and dynamics of the highly flexible side chain of (protonated) phenylethylamino neurotransmitters are essential for their function. The geometric, vibrational, and energetic properties of the protonated neutrotransmitter 2-phenylethylamine (H(+)PEA) are characterized in the N-H stretch range by infrared photodissociation (IRPD) spectroscopy of cold ions using rare gas tagging (Rg = Ne and Ar) and anharmonic calculations at the B3LYP-D3/(aug-)cc-pVTZ level including dispersion corrections. A single folded gauche conformer (G) protonated at the basic amino group and stabilized by an intramolecular NH(+)-π interaction is observed. The dispersion-corrected density functional theory calculations reveal the important effects of dispersion on the cation-π interaction and the large vibrational anharmonicity of the NH3(+) group involved in the NH(+)-π hydrogen bond. They allow for assigning overtone and combination bands and explain anomalous intensities observed in previous IR multiple-photon dissociation spectra. Comparison with neutral PEA reveals the large effects of protonation on the geometric and electronic structure.

Examining the structural evolution of bicarbonate–water clusters: insights from photoelectron spectroscopy, basin-hopping structural search, and comparison with available IR spectral studies

Combining NIPES, theoretical calculations and available IR spectra allows us to identify the minimum energy structures that best fit the experiments.

Probing the microsolvation of a quaternary ion complex: gas phase vibrational spectroscopy of (NaSO4−)2(H2O)n=0–6, 8

We report infrared multiple photon dissociation spectra of cryogenically-cooled (NaSO₄⁻)₂(H₂O)_n dianions (n = 0–6, 8) in the fingerprint spectral region, which provide evidence for a remarkable stability of the quaternary ion complex upon microhydration.

Probing the early stages of solvation of cis-pinate dianions by water, acetonitrile, and methanol: a photoelectron spectroscopy and theoretical study

Photoelectron spectroscopy and theoretical studies indicate the coexistence of symmetric and asymmetric solvated clusters for cis-pinate dianions.

Diffuse Vibrational Signature of a Single Proton Embedded in the Oxalate Scaffold, HO2CCO2(-)

To understand how the D2d oxalate scaffold (C2O4)(2-) distorts upon capture of a proton, we report the vibrational spectra of the cryogenically cooled HO2CCO2(-) anion and its deuterated isotopologue DO2CCO2(-). The transitions associated with the skeletal vibrations and OH bending modes are sharp and are well described by inclusion of cubic terms in the normal mode expansion of the potential surface through an extended Fermi resonance analysis. The ground state structure features a five-membered ring with an asymmetric intramolecular proton bond. The spectral signatures of the hydrogen stretches, on the contrary, are surprisingly diffuse, and this behavior is not anticipated by the extended Fermi scheme. We trace the diffuse bands to very strong couplings between the high-frequency OH-stretch and the low-frequency COH bends as well as heavy particle skeletal deformations. A simple vibrationally adiabatic model recovers this breadth of oscillator strength as a 0 K analogue of the motional broadening commonly used to explain the diffuse spectra of H-bonded systems at elevated temperatures, but where these displacements arise from the configurations present at the vibrational zero-point level.

Vibrational Properties of the Phosphate Group Investigated by Molecular Dynamics and Density Functional Theory

The phosphate group (PO2(-)) is an important building block occurring in many components of living matter including nucleic acids. It provides distinct features in vibrational spectra and is useful as a local probe of NA conformation and interactions with the environment. For this purpose, it is desirable to explore in detail various factors influencing spectral shapes of characteristic phosphate vibrations. In the present study, effects of the solvent and conformational averaging are analyzed for simple model molecules, dimethylphosphate, ethylmethylphosphate, and ethylmethylthiophosphate. Infrared absorption (IR) and Raman spectra were measured and calculated using a combination of molecular dynamics (MD) and density functional theory (DFT). To fully understand the link between the structure and the spectra, the solvent has to be explicitly included in the computational modeling. The results indicate that vibrational properties of the phosphate moiety are very sensitive to its conformation and interactions with the aqueous environment indeed. Polarizable continuum solvent models without explicit water molecules provided significantly worse agreement with the experiment. The combined MD/DFT approach captures well spectral characteristics for the model systems and constitutes the most reliable basis for exploration of phosphate vibrational properties in biomolecular structural studies.

Effects of electronic structure on the hydration of PbNO3(+) and SrNO3(+) ion pairs

Hydration of PbNO3(+) and SrNO3(+) with up to 30 water molecules was investigated with infrared photodissociation (IRPD) spectroscopy and with theory. These ions are the same size, yet the IRPD spectra of these ion pairs for n = 2-8 are significantly different. Bands in the bonded O-H region (∼3000-3550 cm(-1)) indicate that the onset of a second hydration shell begins at n = 5 for PbNO3(+) and n = 6 for SrNO3(+). Spectra for [PbNO3](+)(H2O)2-5 and [SrNO3](+)(H2O)3-6 indicate that the structures of clusters with Pb(ii) are hemidirected with a void in the coordinate sphere. A natural bond orbital analysis of [PbNO3](+)(H2O)5 indicates that the anisotropic solvation of the ion is due to a region of asymmetric electron density on Pb(ii) that can be explained by charge transfer from the nitrate and water ligands into unoccupied p-orbitals on Pb(ii). There are differences in the IRPD spectra of PbNO3(+) and SrNO3(+) with up to 25 water molecules attached. IR intensity in the bonded O-H region is blue-shifted by ∼50 cm(-1) in nanodrops containing SrNO3(+) compared to those containing PbNO3(+), indicative of a greater perturbation of the water H-bond network by strontium. The free O-H stretches of surface water molecules in nanodrops containing 10, 15, 20, and 25 water molecules are red-shifted by ∼3-8 cm(-1) for PbNO3(+) compared to those for SrNO3(+), consistent with more charge transfer between water molecules and Pb(ii). These results demonstrate that the different electronic structure of these ions significantly influences how they are solvated.

Disentangling the Contribution of Multiple Isomers to the Infrared Spectrum of the Protonated Water Heptamer

We use infrared/infrared double-resonance population labeling (IR(2)MS(2)) spectroscopy in the spectral region of the free and hydrogen-bonded OH stretching fundamentals (2880-3850 cm(-1)) to identify the number and to isolate the vibrational signatures of individual isomers contributing to the gas-phase IR spectra of the cryogenically cooled protonated water clusters H(+)(H2O)n·H2/D2 with n = 7-10. For n = 7, four isomers are identified and assigned. Surprisingly, the IR(2)MS(2) spectra of the protonated water octa-, nona-, and decamer show no evidence for multiple isomers. The present spectra support the prediction that the quasi-2D to 3D structural transition occurs in between n = 8 and 9 in the cold cluster regime. However, the same models have difficulty explaining the remarkable size dependence of the isomer population reported here.

Microhydrated dihydrogen phosphate clusters probed by gas phase vibrational spectroscopy and first principles calculations

We report infrared multiple photon dissociation spectra of cryogenically-cooled H₂PO₄⁻(H₂O)_n anions (n = 2–12) in the spectral range of the stretching and bending modes of the solute anion (600–1800 cm⁻¹).