Design and recognition of cucurbituril-secured platinum-bound oligopeptides

Structure elucidation and discrimination of peptides epimers induced by chiral residue by ion mobility mass spectrometry

BACKGROUND

The chirality of amino acid residues in peptide or protein affects the biological activity and function. Improving the elucidation and discrimination of peptide epimers induced by chiral residues in different positions is of great significance in the physiological and pathological study of the dominant L-chiral protein biosphere. The characterization of peptide epimers have been and remain a challenging task because chiral residues do not cause any change in the physical and chemical properties, such as sequence, isoelectric point, or mass-charge ratio.

RESULT

In this work, we provide ion mobility mass spectrometry (IM-MS) analysis of peptide epimers induced by chiral residue and further develop a general and efficient strategy for constructing non-covalent complexes with cucurbituril (CB) to achieve epimers discrimination, especially with limited resolving power of most current instruments. Specifically, IM-MS analysis probes the conformational landscape profile from the model methionine enkephalin (ME) epimers, oligomers, metal adjuncts to multi-nary complexes, improving the identification by amplify structural differences and enrich conformational features, in which [ME+CB[8]+Li+H]2+ enables simultaneous acquisition of the unique conformational feature of all ME epimers. The structural stability changes from epimers to complexes were characterized by energy resolved MS2, and further DFT calculations demonstrated the effect of non-covalent interaction on conformational differences, providing insights for molecular recognition.

SIGNIFICANCE

The method has been successfully applied to the identification of peptide epimers in neuropeptides with single chiral residue and amyloid truncated peptides with multiple chiral residues. This work provides possibility for rapid discovery and efficient identification of peptide isomers and method support for the establishment of comprehensive biomolecular collision cross section (CCS) database.

One-Pot 'Click' Synthesis of Ring-in-Rings Complexes with Customizable π-Stacked Dyads

We report an efficient one-pot aqueous synthesis of ring-in-rings complexes featuring customizable π-stacked dyads. Conventional methods for such complexes often suffer from poor solubility and low yields due to irreversible kinetically controlled reactions. To overcome these limitations, we developed a strategy combining noncovalent preassembly with efficient dynamic covalent bonding to secure a ring-in-rings complex as the exclusive thermodynamic product. Through complexation with cucurbit[8]uril (CB[8]), a folded conformation was induced in an aldehyde-functionalized bis(phenylpyridinium) derivative, predisposing the reactive aldehyde groups to promote acylhydrazone condensation with aromatic dihydrazides. The method achieves high conversion and purity, enabling direct single-crystal growth without the need for purification. We successfully synthesized π-stacked dyads across diverse aromatic moieties, including five distinct single-crystal structures demonstrating dimeric cofacial stacking. Kinetic analysis reveals that CB[8] complexation increases the ceiling temperature of the condensation reaction, rendering the process both thermodynamically and kinetically favorable. The modular nature of this strategy allows for precise tuning of photophysical properties by simply altering the linker lengths and the central aromatic cores, providing a facile platform for exploring structure-function relationships in ring-in-rings complexes and beyond.

Cucurbit[n]uril-Derived Electrocatalysts for Oxygen Evolution, Oxygen Reduction, and Hydrogen Evolution Reactions

Various sustainable energy conversion techniques like water electrolyzers, fuel cells, and metal-air battery devices are promising to alleviate the issues in fossil fuel consumption. However, their broad employment has been mainly inhibited by the lack of advanced electrocatalysts to accelerate the sluggish kinetics of the three involved half-reactions including oxygen evolution reaction (OER), oxygen reduction reaction (ORR), and hydrogen evolution reaction (HER). Recent advances have witnessed the cucurbit[n]uril (CB[n])-directed strategy as a prominent tool to develop high performance electrocatalysts with either OER, ORR, or HER activities. In this review, the recent progress on CB[n]-derived electrocatalysts ranging from molecular complexes to heterogeneous nanostructures and single-atoms for the three half-reactions are reviewed, and future opportunities are discussed. A concise introduction to the fundamentals of CB[n]s regarding their synthesis, structure, and chemistry is given first. Subsequently, the systematic summary of CB[n]-derived electrocatalysts and their performance for the OER/ORR/HER are discussed in detail, with a specific emphasis on correlating their structure and activities by combining diverse physiochemical characterizations, electrochemical experiments, and theory simulations. Finally, a brief conclusion and perspective for future opportunities regarding CB[n]-derived electrocatalysts for many other electrocatalytic applications are proposed.

Supramolecular nanotherapeutics based on cucurbiturils

Polymeric biomaterials have important applications in aiding clinical disease treatment, including drug delivery, bioimaging, and tissue engineering. Currently, conventional tumor chemotherapy faces obstacles such as poor solubility/stability, inability to target, and uncontrolled drug release in clinical trials, for which the emergence of supramolecular material therapeutics combining non-covalent interactions with conventional therapies is a very promising candidate. Due to their molecular recognition abilities with a range of biomolecules, cucurbit[n]uril (CB[n]), a type of macrocyclic receptors with robust backbones, hydrophobic cavities, and carbonyl-binding channels, have garnered a lot of attention. Therefore, this paper reviews recent advances in CB[n] material-based supramolecular therapeutics for clinical treatments, including targeted delivery applications and related imaging and sensing systems. This study also covers the distinctive benefits of CB materials for biological applications, as well as the trends and prospects of this interdisciplinary subject, based on numerous state-of-the-art research findings.

Supramolecular self-sorting predicted by a simple harmonic oscillator model

Macrocycles that encapsulate two guests can self-sort those into homo- and heterodimers. We report here a family of self-sorting homobimetallic Pt(II) terpyridyl acetylide dimers secured together with a pair of Cucurbit[8]uril macrocycles (CB[8]). The rigid bridging unit between both Pt centers introduces varying "hinge" angles, resulting in disparities in Pt-Pt distances in the heterodimers, and leads to recognition motif mismatch. We found that the self-sorting process can be quantified using a simple model, in which each complex behaves as a simple harmonic oscillator, whose heteroassembly tends to minimize geometry distorsions through C(aryl)-CC-Pt axis deformation.

Molecular recognition of peptides and proteins by cucurbit[n]urils: systems and applications

The development of methodology for attaching ligand binding sites to proteins of interest has accelerated biomedical science. Such protein tags have widespread applications as well as properties that significantly limit their utility. This review describes the mechanisms and applications of supramolecular systems comprising the synthetic receptors cucurbit[7]uril (Q7) or cucurbit[8]uril (Q8) and their polypeptide ligands. Molecular recognition of peptides and proteins occurs at sites of 1-3 amino acids with high selectivity and affinity via several distinct mechanisms, which are supported by extensive thermodynamic and structural studies in aqueous media. The commercial availability, low cost, high stability, and biocompatibility of these synthetic receptors has led to the development of myriad applications. This comprehensive review compiles the molecular recognition studies and the resulting applications with the goals of providing a valuable resource to the community and inspiring the next generation of innovation.

Cucurbit[8]uril-Mediated Supramolecular Heterodimerisation and Photoinduced [2+2] Heterocycloaddition to Generate Unexpected [2]Rotaxanes

In contrast to the self-assembly of homosupramolecules, the self-assembly of heterosupramolecules is more challenging and significant in various fields. Herein, we design and investigate a cucurbit[8]uril-mediated heterodimerisation based on an arene-fluoroarene strategy. Furthermore, the heteroternary complex is found to be able to undergo a photoinduced [2+2] heterocycloaddition, resulting in the formation of an unexpected [2]rotaxane. This work demonstrates a novel supramolecular heterodimerisation system that not only contributes to the development of photoisomerisation systems, but also enriches synthetic methods for mechanically interlocked molecules.

Host-guest binding between cucurbit[8]uril and amphiphilic peptides achieved tunable supramolecular aggregates for cancer diagnosis

The manipulation of biocompatible supramolecular nanostructures at subcellular and cellular levels has become one of the increasingly significant topics but remains a formidable challenge in chemical and biological science. In this work, a controllable supramolecular aggregate based on host-guest competitive binding is elaborately constructed using cucurbit[8]uril, methionine-containing amphiphilic peptide, and perylene diimide, displaying in situ oxidation-driven macrocycle-confined fluorescence enhancement for cell imaging and morphological reconstruction for cancer cell death. The experimental results demonstrate that cucurbit[8]uril possesses a high binding affinity with the methionine peptide, while this value sharply decreases after the methionine residue is oxidized to sulfoxide or sulfone. Therefore, perylene diimide can be competitively included by cucurbit[8]uril in the co-assemblies, eventually resulting in a 10-fold fluorescence enhancement and the conversion of topological morphology from nano-sized particles to micron-sized sheets. Moreover, the obtained ternary assemblies can be oxidized by endogenous reactive oxygen species in cancer cells, thus not only providing enhanced fluorescence for cell imaging, but also leading to endoplasmic reticulum dysfunction and significant cell death. Therefore, the controllable and oxidation-responsive morphological transformation based on the host-guest competitive binding in biological media can be viewed as a feasible means for efficient disease theragnosis.

Cyclometalated luminescent platinum(II) complexes of dissymmetrical 2,2':4',2''-terpyridine and its self-assembled dimer presenting Pt-Ag dative bonds

A series of cyclometalated (N^C^N) Pt(II)-platinum complexes featuring a terpyridine ligand with a non-coordinating nitrogen atom and a Pt-C bond was synthesized. In the presence of Ag+, the bis(isonitrile)Pt(II) complex formed a remarkable self-assembled helicoidal dimer stabilized by coordination of Ag(I) and metallophilic Pt-Ag interactions. Its assembly was observed in the solid state and maintained in solution. All complexes show strong luminescence and multiple emitting states, which could be rationalized based on solid state X-ray structures and coordinating environment.

Unveiling the synergy: a combined experimental and theoretical study of β-cyclodextrin with melatonin

Melatonin (MT) is a vital hormone controlling biorhythms, and optimizing its release in the human body is crucial. To address MT's unfavorable pharmacokinetics, we explored the inclusion complexes of MT with β-cyclodextrin (β-CD). Nano spray drying was applied to efficiently synthesize these complexes in three molar ratios (MT : β-CD = 1 : 1, 2 : 1, and 1 : 2), reducing reagent use and expediting inclusion. The complex powders were characterized through thermal analyses (TGA and DSC), Fourier transform infrared spectroscopy (FTIR), and in vitro MT release measurements via high-performance liquid chromatography (HPLC). In parallel, computational studies were conducted, examining the stability of MT : β-CD complexes by means of unbiased semi-empirical conformational searches refined by DFT, which produced a distribution of MT : β-CD binding enthalpies. Computational findings highlighted that these complexes are stabilized by specific hydrogen bonds and non-specific dispersive forces, with stronger binding in the 1 : 1 complex, which was corroborated by in vitro release data. Furthermore, the alignment between simulated and experimental FTIR spectra demonstrated the quality of both the structural model and computational methodology, which was crucial to enhance our comprehension of optimizing MT's release for therapeutic applications.

Internal Dynamics and Modular Peripheral Binding in Stimuli-Responsive 3 : 2 Host:Guest Complexes

Now that the chemistry of 1 : 1 host:guest complexes is well-established, it is surprising to note that higher stoichiometry (oligomeric) complexes, especially those with excess host, remain largely unexplored. Yet, proteins tend to oligomerize, affording new functions for cell machinery. Here, we show that cucurbit[n]uril (CB[n]) macrocycles combined with symmetric, linear di-viologens form unusual 3 : 2 host:guest complexes exhibiting remarkable dynamic properties, host self-sorting, and external ring-translocation. These results highlight the structural tunability of cucurbit[8]uril (CB[8]) based 3 : 2 host:guest complexes in water and their responsiveness toward several stimuli (chemicals, pH, redox).

A library of vinyl phosphonate anions dimerize with cyanostars, form supramolecular polymers and undergo statistical sorting

Supramolecular dimers are elementary units allowing the build-up of multi-molecule architectures. New among these are cyanostar-stabilized dimers of phosphate and phosphonate anions. While the anion dimerization at the heart of these assemblies is reliable, the covalent synthesis leading to this class of designer anions serves as a bottleneck in the pathway to supramolecular assemblies. Herein, we demonstrate the reliable synthesis of 14 diverse anionic monomers by Heck coupling between vinyl phosphonic acid and aryl bromide compounds. When this synthesis is combined with reliable anion dimerization, we show formation of supramolecular dimers and polymers by co-assembly with cyanostar macrocycles. The removal of the covalent bottleneck opened up a seamless synthetic route to iterate through three monomers affording the solubility needed to characterize the mechanism of supramolecular polymerization. We also test the idea that the small size of these vinyl phosphonates provide identical dimer stabilities across the library by showing how mixtures of anions undergo statistical (social) self-sorting. We exploit this property by preparing soluble copolymers from the mixing of different monomers. This multi-anion assembly shows the utility of a library for programming properties.

Preparation and In Vitro Validation of a Cucurbit[7]uril-Peptide Conjugate Targeting the LDL Receptor

Here we report the coupling of a cyclic peptide (VH4127) targeting the low density lipoprotein (LDL) receptor (LDLR) noncompetitively to cucurbit[7]uril (CB[7]) to develop a new kind of drug delivery system (DDS), namely, CB[7]-VH4127, with maintained binding affinity to the LDLR. To evaluate the uptake potential of this bismacrocyclic compound, another conjugate was prepared comprising a high-affinity group for CB[7] (adamantyl(Ada)-amine) coupled to the fluorescent tracker Alexa680 (A680). The resulting A680-Ada·CB[7]-VH4127 supramolecular complex demonstrated conserved LDLR-binding potential and improved LDLR-mediated endocytosis and intracellular accumulation potential in LDLR-expressing cells. The combination of two technologies, namely, monofunctionalized CB[7] and the VH4127 LDLR-targeting peptide, opens new avenues in terms of targeting and intracellular delivery to LDLR-expressing tissues or tumors. The versatile transport capacity of CB[7], known to bind a large spectrum of bioactive or functional compounds, makes this new DDS suitable for a wide range of therapeutic or imaging applications.

Cucurbit[10]uril-mediated Supramolecular Assembly for Optically Tunable Dimers and Near White-light Emissive Materials

Cucurbit[10]uril (Q[10]), the cucurbit[ n ]uril with the greatest cavity, exhibits several new features in the development of the host-guest complex. Thus, based on Q[10] and π-conjugated molecule, oligo(p-phenylenevinylene) derivative (OPVCOOH), the host-guest complexes with three different interaction ratios of 1:2, 2:2, and 3:2 assemblies (Q[10]: guest) were fabricated. Depending on the host/guest ratio, the emission color of these complexes ranged from blue to yellow-green. The extra Fe 2+ coordinated with a bare carboxyl group of the Q[10]-OPVCOOH (3:2) assembly, obstructing its rotaxane structure and forming Q[10]-OPVCOOH-Fe 2+ assembly, which may be used as a coating for near-white LED bulbs.

Activation of positive cooperativity by size-mismatch assembly via inclination of guests in a single-site receptor

A halogenated bowl-shaped guest, corannulene, was encapsulated in a cylindrical host, [4]cyclochrysenylene, to form a bowl-in-tube complex, which mimicked supramolecular complexes between bowl guests and carbon nanotubes. As was the case with carbon nanotubes, the cylindrical space of [4]cyclochrysenylene trapped multiple corannulene molecules in an array, and 1:2 complexes were commonly obtained with the corannulene guests with various halogen substituents (F, Cl, Br and I). Careful statistical analyses of isothermal titration calorimetry titration data succeeded in revealing the stoichiometry, and the molecular structures of the 1:2 complexes were further clarified by X-ray crystallographic analyses. Two fluorinated corannulene guests were stacked perpendicular to the cylinder axis, while two chlorinated guests were stacked with inclined orientations. The structural difference resulted in a large difference in the cooperativity of the two-stage association in solution: fluorinated corannulene guests showed negative cooperativity for the 1:2 complexation, and the other, larger halogenated corannulene guests showed positive cooperativity.

Ultramacrocyclization in water via external templation

Condensing a dihydrazide and each of a series of cationic bisaldehyde compounds bearing polymethylene chains in weakly acidic water produces either a macrocycle in a [1 + 1] manner or its dimer namely a [2]catenane, or their mixture. The product distribution is determined by the length of the bisaldehydes. Addition of cucurbit[8]uril (CB[8]) drives the catenane/macrocycle equilibria to the side of macrocycles, by forming ring-in-ring complexes with the latter. When the polymethylene unit of the bisaldehyde is replaced with a more rigid p-xylene linker, its self-assembly with the dihydrazide leads to quantitative formation of a [2]catenane. Upon addition of CB[8], the [2]catenane is transformed into an ultra-large macrocycle condensed in a [2 + 2] manner, which is encircled by two CB[8] rings. The framework of this macrocycle contains one hundred and two atoms, whose synthesis would be a formidable task without the external template CB[8]. Removal of CB[8] with a competitive guest leads to recovery of the [2]catenane.

Tunable White-Light Emissions of Azapyrene Derivatives with Cucurbit[n]uril Hosts in Aqueous Solution

Cucurbit[n]uril (CB[n])-mediated assembly of π-conjugated azapyrene derivatives with rigid aromatic rings as bridging units into optically tunable complexes is reported. Due to the hindrance of rotation of diazapyrene moieties and the enhancement of intramolecular charge transfer of chromophore guests within the cavity of the CB[8] host, color tuning including white-light emission was easily achieved by introducing CB[8] into the guest aqueous solution, therefore suggesting a feasible strategy for the creation of tunable white-light emission materials through CB[n]-based host-guest interactions.

Enhanced photoreduction of water catalyzed by a cucurbit[8]uril-secured platinum dimer

A cucurbit[8]uril (CB[8])-secured platinum terpyridyl chloride dimer was used as a photosensitizer and hydrogen-evolving catalyst for the photoreduction of water. Volumes of produced hydrogen were up to 25 and 6 times larger than those obtained with the corresponding free and cucurbit[7]uril-bound platinum monomer, respectively, at equal Pt concentration. The thermodynamics of the proton-coupled electron transfer from the Pt(ii)–Pt(ii) dimer to the corresponding Pt(ii)–Pt(iii)–H hydride key intermediate, as quantified by density functional theory, suggest that CB[8] secures the Pt(ii)–Pt(ii) dimer in a particularly reactive conformation that promotes hydrogen formation.

The cucurbit[8]uril macrocycle can secure a platinum terpyridyl complex into a particularly reactive dimer that catalyzes the photoreduction of water.