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Santibáñez-López CE, Ojanguren-Affilastro AA, Graham MR, Sharma PP. Congruence between ultraconserved element-based matrices and phylotranscriptomic datasets in the scorpion Tree of Life. Cladistics 2023; 39:533-547. [PMID: 37401727 DOI: 10.1111/cla.12551] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 06/06/2023] [Indexed: 07/05/2023] Open
Abstract
Scorpions are ancient and historically renowned for their potent venom. Traditionally, the systematics of this group of arthropods was supported by morphological characters, until recent phylogenomic analyses (using RNAseq data) revealed most of the higher-level taxa to be non-monophyletic. While these phylogenomic hypotheses are stable for almost all lineages, some nodes have been hard to resolve due to minimal taxonomic sampling (e.g. family Chactidae). In the same line, it has been shown that some nodes in the Arachnid Tree of Life show disagreement between hypotheses generated using transcritptomes and other genomic sources such as the ultraconserved elements (UCEs). Here, we compared the phylogenetic signal of transcriptomes vs. UCEs by retrieving UCEs from new and previously published scorpion transcriptomes and genomes, and reconstructed phylogenies using both datasets independently. We reexamined the monophyly and phylogenetic placement of Chactidae, sampling an additional chactid species using both datasets. Our results showed that both sets of genome-scale datasets recovered highly similar topologies, with Chactidae rendered paraphyletic owing to the placement of Nullibrotheas allenii. As a first step toward redressing the systematics of Chactidae, we establish the family Anuroctonidae (new family) to accommodate the genus Anuroctonus.
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Affiliation(s)
| | | | - Matthew R Graham
- Department of Biology, Eastern Connecticut State University, Willimantic, CT, 06226, USA
| | - Prashant P Sharma
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, 53706, USA
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Prendini L, Ehrenthal VL, Loria SF. Systematics of the Relictual Asian Scorpion Family Pseudochactidae Gromov, 1998, with a Review of Cavernicolous, Troglobitic, and Troglomorphic Scorpions. BULLETIN OF THE AMERICAN MUSEUM OF NATURAL HISTORY 2021. [DOI: 10.1206/0003-0090.453.1.1] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
Affiliation(s)
- Lorenzo Prendini
- Scorpion Systematics Research Group, Division of Invertebrate Zoology, American Museum of Natural History
| | - Valentin L. Ehrenthal
- Section of Arachmology & Myriapodology, Center for Taxonomy and Morphology, Zoological Museum, Leibnitz Institute for the Analysis of Biodiversity Change; Department of Biology, University of Hamburg, Germany
| | - Stephanie F. Loria
- Scorpion Systematics Research Group, Division of Invertebrate Zoology; Richard Gilder Graduate School, American Museum of Natural History
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Abstract
Sistema Huautla is the deepest cave system in the Americas at 1560 m and the fifth longest in Mexico at 89,000 m, and it is a mostly vertical network of interconnected passages. The surface landscape is rugged, ranging from 3500 to 2500 masl, intersected by streams and deep gorges. There are numerous dolinas, from hundreds to tens of meters in width and depth. The weather is basically temperate subhumid with summer rains. The average yearly rainfall is approximately 2500 mm, with a monthly average of 35 mm for the driest times of the year and up to 500 mm for the wettest month. All these conditions play an important role for achieving the highest terrestrial troglobite diversity in Mexico, containing a total of 35 species, of which 27 are possible troglobites (16 described), including numerous arachnids, millipedes, springtails, silverfish, and a single described species of beetles. With those numbers, Sistema Huautla is one of the richest cave systems in the world.
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Gainett G, Ballesteros JA, Kanzler CR, Zehms JT, Zern JM, Aharon S, Gavish-Regev E, Sharma PP. Systemic paralogy and function of retinal determination network homologs in arachnids. BMC Genomics 2020; 21:811. [PMID: 33225889 PMCID: PMC7681978 DOI: 10.1186/s12864-020-07149-x] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2020] [Accepted: 10/13/2020] [Indexed: 01/23/2023] Open
Abstract
BACKGROUND Arachnids are important components of cave ecosystems and display many examples of troglomorphisms, such as blindness, depigmentation, and elongate appendages. Little is known about how the eyes of arachnids are specified genetically, let alone the mechanisms for eye reduction and loss in troglomorphic arachnids. Additionally, duplication of Retinal Determination Gene Network (RDGN) homologs in spiders has convoluted functional inferences extrapolated from single-copy homologs in pancrustacean models. RESULTS We investigated a sister species pair of Israeli cave whip spiders, Charinus ioanniticus and C. israelensis (Arachnopulmonata, Amblypygi), of which one species has reduced eyes. We generated embryonic transcriptomes for both Amblypygi species, and discovered that several RDGN homologs exhibit duplications. We show that duplication of RDGN homologs is systemic across arachnopulmonates (arachnid orders that bear book lungs), rather than being a spider-specific phenomenon. A differential gene expression (DGE) analysis comparing the expression of RDGN genes in field-collected embryos of both species identified candidate RDGN genes involved in the formation and reduction of eyes in whip spiders. To ground bioinformatic inference of expression patterns with functional experiments, we interrogated the function of three candidate RDGN genes identified from DGE using RNAi in the spider Parasteatoda tepidariorum. We provide functional evidence that one of these paralogs, sine oculis/Six1 A (soA), is necessary for the development of all arachnid eye types. CONCLUSIONS Our work establishes a foundation to investigate the genetics of troglomorphic adaptations in cave arachnids, and links differential gene expression to an arthropod eye phenotype for the first time outside of Pancrustacea. Our results support the conservation of at least one RDGN component across Arthropoda and provide a framework for identifying the role of gene duplications in generating arachnid eye diversity.
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Affiliation(s)
- Guilherme Gainett
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, 53706, USA.
| | - Jesús A Ballesteros
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, 53706, USA.
| | - Charlotte R Kanzler
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, 53706, USA
| | - Jakob T Zehms
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, 53706, USA
| | - John M Zern
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, 53706, USA
| | - Shlomi Aharon
- National Natural History Collections, The Hebrew University of Jerusalem , Jerusalem, 9190401, Israel
| | - Efrat Gavish-Regev
- National Natural History Collections, The Hebrew University of Jerusalem , Jerusalem, 9190401, Israel
| | - Prashant P Sharma
- Department of Integrative Biology, University of Wisconsin-Madison, Madison, WI, 53706, USA
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Cid-Uribe JI, Veytia-Bucheli JI, Romero-Gutierrez T, Ortiz E, Possani LD. Scorpion venomics: a 2019 overview. Expert Rev Proteomics 2019; 17:67-83. [DOI: 10.1080/14789450.2020.1705158] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022]
Affiliation(s)
- Jimena I. Cid-Uribe
- Departamento de Medicina Molecular y Bioprocesos, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Mexico
| | - José Ignacio Veytia-Bucheli
- Departamento de Medicina Molecular y Bioprocesos, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Mexico
| | - Teresa Romero-Gutierrez
- Departamento de Ciencias Computacionales, Centro Universitario de Ciencias Exactas e Ingenierías, Universidad de Guadalajara, Guadalajara, Mexico
| | - Ernesto Ortiz
- Departamento de Medicina Molecular y Bioprocesos, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Mexico
| | - Lourival D. Possani
- Departamento de Medicina Molecular y Bioprocesos, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Cuernavaca, Mexico
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Howard RJ, Edgecombe GD, Legg DA, Pisani D, Lozano-Fernandez J. Exploring the evolution and terrestrialization of scorpions (Arachnida: Scorpiones) with rocks and clocks. ORG DIVERS EVOL 2019. [DOI: 10.1007/s13127-019-00390-7] [Citation(s) in RCA: 16] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
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Lourenço WR, Pham DS, Tran TH, Tran TH. The genus Vietbocap Lourenço & Pham, 2010 in the Thien Duong cave, Vietnam: A possible case of subterranean speciation in scorpions (Scorpiones: Pseudochactidae). C R Biol 2018; 341:264-273. [PMID: 29609958 DOI: 10.1016/j.crvi.2018.03.002] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/26/2018] [Revised: 03/04/2018] [Accepted: 03/05/2018] [Indexed: 10/17/2022]
Abstract
Two new species of scorpion belonging to the family Pseudochactidae and to the genus Vietbocap are described based on specimens collected in the Thien Duong cave, which belongs to the Vom cave system, in the Phong Nha-Ke Bang National Park, Quang Binh Province, Vietnam. The previously described species from this cave, Vietbocap thienduongensis Lourenço & Pham, 2012 was collected in the initial section of the cave (1500 to 1800m from the cave entrance) and proved to be a true troglobitic element. The diagnosis of this species, only known from males, is completed based on females collected at 750m from the cave entrance. The two new species described here were collected respectively at 3000 and 5000m from the cave entrance and are also true troglobitic elements, very similar to V. thienduongensis, but showing some clear morphological differences. This observed situation suggests a possible case of speciation within the cave system, the first one ever reported for scorpions. The population found at 5000m from the entrance of the cave is a total new record of distance from a cave entrance for scorpions.
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Affiliation(s)
- Wilson R Lourenço
- Evolution, biodiversité (ISYEB), Muséum national d'histoire naturelle, Sorbonne universités, Institut de systématique, UMR7205 CNRS, MNHN, UPMC, EPHE, CP 53, 57, rue Cuvier, 75005 Paris, France.
| | - Dinh-Sac Pham
- Graduate University of Science and Technology (GUST), Vietnam Academy of Science and Technology (VAST), Cau Giay, Hanoi, Vietnam
| | - Thi-Hang Tran
- Graduate University of Science and Technology (GUST), Vietnam Academy of Science and Technology (VAST), Cau Giay, Hanoi, Vietnam
| | - Thi-Hang Tran
- Graduate University of Science and Technology (GUST), Vietnam Academy of Science and Technology (VAST), Cau Giay, Hanoi, Vietnam; Hanoi Center for preventive medicine, 70, Nguyen Chi Thanh, Dong Da, Hanoi, Vietnam
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Deng Y, Gu J, Yan Z, Wang M, Ma C, Zhang J, Jiang G, Ge M, Xu S, Xu Z, Xiao L. De novo transcriptomic analysis of the venomous glands from the scorpion Heterometrus spinifer revealed unique and extremely high diversity of the venom peptides. Toxicon 2018; 143:1-19. [DOI: 10.1016/j.toxicon.2017.12.051] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/29/2017] [Revised: 12/22/2017] [Accepted: 12/25/2017] [Indexed: 02/07/2023]
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Deharveng L, Bedos A. Diversity of Terrestrial Invertebrates in Subterranean Habitats. CAVE ECOLOGY 2018. [DOI: 10.1007/978-3-319-98852-8_7] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
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Monod L, Cauwet L, González-Santillán E, Huber S. The male sexual apparatus in the order Scorpiones (Arachnida): a comparative study of functional morphology as a tool to define hypotheses of homology. Front Zool 2017; 14:51. [PMID: 29201131 PMCID: PMC5699194 DOI: 10.1186/s12983-017-0231-z] [Citation(s) in RCA: 13] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2017] [Accepted: 09/26/2017] [Indexed: 11/10/2022] Open
Abstract
BACKGROUND Insemination in scorpions is carried out by means of a partly sclerotized structure, the spermatophore, which is composed of two separate halves, the hemispermatophores. In most genera these reproductive structures can be used to differentiate species. However, many taxa such as the genus Euscorpius and the family Diplocentridae lack the morphological diversity observed in the copulatory organs of many other arthropods, rendering them useless for species level taxonomy. Such structural stasis, however, suggests that hemispermatophores have evolved relatively slowly and may thus provide a stronger phylogenetic signal for recognizing supra-generic ranks than previously thought. Based on the postulate that the phenotypic stability observed in some groups is the consequence of functional constraint, the most comprehensive comparative study of the male sexual apparatus to date was conducted for a complete reassessment of the morphology, phylogenetic value and hypotheses of homology of these structures. RESULTS Hemispermatophores, pre- and post-insemination spermatophores, as well as the inherent mechanisms of insemination, were studied across the whole order, allowing the recognition and description of a series of five basic bauplans for the capsular region. For the most part, these patterns appear to be consistent within each major taxonomic group, but several cases of incongruence between spermatophore morphology and taxonomy raises questions about the monophyly of some clades. The Bothriuridae are traditionally regarded as a basal scorpionoid family. However, except for the genus Lisposoma, bothriurid hemispermatophores and spermatophores are morphologically more similar to those of the Chactoidea than to those of scorpionoids. On the other hand, the male copulatory structures of the hormurid clade (Hormiops (Hormurus + Liocheles)) are more akin to those of Diplocentridae and Heteroscorpionidae than to those of other hormurids. CONCLUSIONS Spermatophore capsular patterns appears to be congruent with a recent phylogeny of the order Scorpiones based on phylogenomic data that placed Bothriuridae outside of Scorpionoidea and Liocheles outside of Hormuridae, in contradicton with earlier phylogenetic reconstructions based on morphology. This raises questions about the potential use of functionally constrained traits to assess the reliability of contradicting phylogenetic hypotheses and emphasizes the need for a thorough reassessment of the scorpion phylogenetic relationships.
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Affiliation(s)
- Lionel Monod
- Département des arthropodes et d’entomologie I, Muséum d’histoire naturelle, Route de Malagnou 1, 1208 Genève, Switzerland
| | - Lucie Cauwet
- Département des arthropodes et d’entomologie I, Muséum d’histoire naturelle, Route de Malagnou 1, 1208 Genève, Switzerland
| | - Edmundo González-Santillán
- Instituto de Biotecnología, UNAM, Avenida Universidad 2001, Colonia Chamilpa C.P., 62210 Cuernavaca, Morelos México
| | - Siegfried Huber
- Département des arthropodes et d’entomologie I, Muséum d’histoire naturelle, Route de Malagnou 1, 1208 Genève, Switzerland
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Monjaraz-Ruedas R, Francke OF, Cruz-López JA, Santibáñez-López CE. Annuli and setal patterns in the flagellum of female micro-whipscorpions (Arachnida: Schizomida): Hypotheses of homology across an order. ZOOL ANZ 2016. [DOI: 10.1016/j.jcz.2016.05.003] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Santibáñez-López CE, Francke OF, Ureta C, Possani LD. Scorpions from Mexico: From Species Diversity to Venom Complexity. Toxins (Basel) 2015; 8:E2. [PMID: 26712787 PMCID: PMC4728524 DOI: 10.3390/toxins8010002] [Citation(s) in RCA: 56] [Impact Index Per Article: 6.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2015] [Revised: 11/25/2015] [Accepted: 12/09/2015] [Indexed: 12/13/2022] Open
Abstract
Scorpions are among the oldest terrestrial arthropods, which are distributed worldwide, except for Antarctica and some Pacific islands. Scorpion envenomation represents a public health problem in several parts of the world. Mexico harbors the highest diversity of scorpions in the world, including some of the world's medically important scorpion species. The systematics and diversity of Mexican scorpion fauna has not been revised in the past decade; and due to recent and exhaustive collection efforts as part of different ongoing major revisionary systematic projects, our understanding of this diversity has changed compared with previous assessments. Given the presence of several medically important scorpion species, the study of their venom in the country is also important. In the present contribution, the diversity of scorpion species in Mexico is revised and updated based on several new systematic contributions; 281 different species are recorded. Commentaries on recent venomic, ecological and behavioral studies of Mexican scorpions are also provided. A list containing the most important peptides identified from 16 different species is included. A graphical representation of the different types of components found in these venoms is also revised. A map with hotspots showing the current knowledge on scorpion distribution and areas explored in Mexico is also provided.
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Affiliation(s)
- Carlos E Santibáñez-López
- Departamento de Medicina Molecular y Bioprocesos, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Apartado Postal 510-3, Cuernavaca Morelos 62210, Mexico.
| | - Oscar F Francke
- Colección Nacional de Arácnidos, Instituto de Biología, Universidad Nacional Autónoma de México, Circuito exterior s/n, Ciudad Universitaria, Copilco, Coyoacán A.P. 70-233, Distrito Federal 04510, Mexico.
| | - Carolina Ureta
- Laboratorio de Genética Molecular, Desarrollo y Evolución de Plantas, Departamento de Ecología Funcional, Instituto de Ecología, Universidad Autónoma de México, Apartado Postal 70-275, Ciudad Universitaria, Distrito Federal 04510, Mexico.
| | - Lourival D Possani
- Departamento de Medicina Molecular y Bioprocesos, Instituto de Biotecnología, Universidad Nacional Autónoma de México, Avenida Universidad 2001, Apartado Postal 510-3, Cuernavaca Morelos 62210, Mexico.
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