Dynamic reconfiguration of human brain networks during learning

Association of node assortativity and internalizing symptoms with ketogenic diet effectiveness in pediatric patients with drug-resistant epilepsy

BACKGROUND

The ketogenic diet (KD) is an effective alternative therapy for drug-resistant epilepsy (DRE). However, there are no established predictors for KD effectiveness. We aimed to investigate the impact of 12 months of KD therapy (KDT) on brain connectivity, as measured by functional magnetic resonance imaging (fMRI), and its correlation with seizure control, behavioral/mood alterations, and parental stress.

METHODS

Children with DRE were enrolled in this single-center, prospective cohort study from February 2020 to October 2021. They were divided into a control group and a KDT group. The Child Behavior Checklist (CBCL) and Parental Stress Index (PSI) were administered to parents at the initiation of KDT (T0) and at 12 months (T1). Resting-state fMRI was performed at T0 and at 6 months of KDT. The primary outcome was the between-group difference in the change of CBCL/PSI scores, and brain connectivity metrics after KDT, and the secondary outcome involved measuring their correlation with seizure reduction rates.

RESULTS

Twenty-two patients with DRE were enrolled. We had 13 patients in the control group and 9 in the KDT group. Our data revealed that 12 months of KDT can reduce monthly seizure frequency. Several subscales of CBCL T-scores were higher at T0 compared with the control group, then becoming comparable at T1. The PSI scores from 'mothers' reports reduced after receiving KDT. The changes in node assortativity (ΔAssortativity) were positively correlated with behavioral problems and negatively with seizure reduction rates in the KD group.

CONCLUSIONS

Twelve months of KDT can reduce monthly seizure frequency and improve mood/behavioral disturbances in patients with DRE. Furthermore, KDT could relieve primary caregivers' stress. A lower ΔAssortativity value was associated with better behavioral outcomes and greater seizure reduction. The ΔAssortativity value in fMRI may be a crucial predictor for the effectiveness of KDT.

Dynamics of frontal cortex functional connectivity during cognitive tasks: insights from fNIRS analysis in the Dual n-back Paradigm

The human brain operates as a complex network, and understanding its functional connectivity is a core challenge in neuroscience. Functional near-infrared spectroscopy (fNIRS) offers a non-invasive, portable method for studying brain activity and connectivity, providing valuable insights into the brain's network dynamics. In this study, we used fNIRS to examine the functional connectivity of the human brain during the Dual n-back task, a cognitive challenge that varies in memory load (0-back, 1-back, and 2-back). Data were collected from 24 channels in the frontal cortex and pre-processed with discrete wavelet transform. Functional connectivity matrices for each task level were calculated using correlation analysis, and graph theory metrics such as clustering coefficient and local and global efficiency were assessed. Statistical comparisons (t-tests and ANOVA) revealed significant differences in these metrics across memory load levels, with higher memory loads leading to altered brain connectivity patterns (p < 0.05 for clustering coefficient and local efficiency, p < 0.04 for global efficiency). These findings suggest that as cognitive demand increases, the functional connectivity of the brain's frontal network changes, reflecting the dynamic nature of brain activity during complex tasks. This research highlights the potential of fNIRS for exploring brain network functions and has broader implications for understanding cognitive processes and developing neurocognitive diagnostics and interventions.

Brain activity dynamics after traumatic brain injury indicate increased state transition energy and preference of lower order states

Traumatic Brain Injury (TBI) can cause structural damage to the neural tissue and white matter connections in the brain, disrupting its functional coactivation patterns. Although there are a wealth of studies investigating TBI-related changes in the brain's structural and functional connectomes, fewer studies have investigated TBI-related changes to the brain's dynamic landscape. Network control theory is a framework that integrates structural connectomes and functional time-series to quantify brain dynamics. Using this approach, we analyzed longitudinal trajectories of brain dynamics from acute to chronic injury phases in two cohorts of individuals with mild and moderate to severe TBI, and compared them to non-brain-injured, age- and sex-matched control individuals' trajectories. Our analyses suggest individuals with mild TBI initially have brain activity dynamics similar to controls but then shift in the subacute and chronic stages of the injury (1 month and 12 months post-injury) to favor lower-order visual-dominant states compared to higher-order default mode dominant states. We further find that, compared to controls, individuals with mild TBI have overall decreased entropy and increased transition energy demand in the sub-acute and chronic stages that correlates with poorer attention performance. Finally, we found that the asymmetry in top-down to bottom-up transition energies increased in subacute and chronic stages of mild TBI, possibly indicating decreased efficacy of top-down inhibition. We replicate most findings with the moderate to severe TBI dataset, indicating their robustness, with the notable exception of finding the opposite correlation between global transition energy and mean reaction time (MRT). We attribute differences to the cohorts' varied injury severity, with perhaps a stronger compensatory mechanism in moderate to severe TBI. Overall, our findings reveal shifting brain dynamics after mild to severe TBI that relate to behavioral measures of attention, shedding light on post-injury mechanisms of recovery.

An Integrated Electroencephalography and Eye-Tracking Analysis Using eXtreme Gradient Boosting for Mental Workload Evaluation in Surgery

ObjectiveWe aimed to develop advanced machine learning models using electroencephalogram (EEG) and eye-tracking data to predict the mental workload associated with engaging in various surgical tasks.BackgroundTraditional methods of evaluating mental workload often involve self-report scales, which are subject to individual biases. Due to the multidimensional nature of mental workload, there is a pressing need to identify factors that contribute to mental workload across different surgical tasks.MethodEEG and eye-tracking data from 26 participants performing Matchboard and Ring Walk tasks from the da Vinci simulator and the pattern cut and suturing tasks from the Fundamentals of Laparoscopic Surgery (FLS) program were used to develop an eXtreme Gradient Boosting (XGBoost) model for mental workload evaluation.ResultsThe developed XGBoost models demonstrated strong predictive performance with R2 values of 0.82, 0.81, 0.82, and 0.83 for the Matchboard, Ring Walk, pattern cut, and suturing tasks, respectively. Key features for predicting mental workload included task average pupil diameter, complexity level, average functional connectivity strength at the temporal lobe, and the total trajectory length of the nondominant eye's pupil. Integrating features from both EEG and eye-tracking data significantly enhanced the performance of mental workload evaluation models, as evidenced by repeated-measures t-tests yielding p-values less than 0.05. However, this enhancement was not observed in the Pattern Cut task (repeated-measures t-tests; p > 0.05).ConclusionThe findings underscore the potential for machine learning and multidimensional feature integration to predict mental workload and thereby improve task design and surgical training.ApplicationThe advanced mental workload prediction models could serve as instrumental tools to enhance our understanding of surgeons' cognitive demands and significantly improve the effectiveness of surgical training programs.

Toward Principles of Brain Network Organization and Function

The brain is immensely complex, with diverse components and dynamic interactions building upon one another to orchestrate a wide range of behaviors. Understanding patterns of these complex interactions and how they are coordinated to support collective neural function is critical for parsing human and animal behavior, treating mental illness, and developing artificial intelligence. Rapid experimental advances in imaging, recording, and perturbing neural systems across various species now provide opportunities to distill underlying principles of brain organization and function. Here, we take stock of recent progress and review methods used in the statistical analysis of brain networks, drawing from fields of statistical physics, network theory, and information theory. Our discussion is organized by scale, starting with models of individual neurons and extending to large-scale networks mapped across brain regions. We then examine organizing principles and constraints that shape the biological structure and function of neural circuits. We conclude with an overview of several critical frontiers, including expanding current models, fostering tighter feedback between theory and experiment, and leveraging perturbative approaches to understand neural systems. Alongside these efforts, we highlight the importance of contextualizing their contributions by linking them to formal accounts of explanation and causation.

Identification of functional dynamic brain states based on graph attention networks

Investigation of the functional dynamics of the human brain can help to unveil inherent cognitive systems. In this study, we adopted a graph attention network-based anomaly detection technique to identify abrupt changes in functional time series. We used the resting-state functional magnetic resonance imaging data of 1010 participants from the Human Connectome Project. By applying multivariate time series anomaly detection using the graph attention network approach, we identified three distinct brain states, termed S1, S2, and S3. We further generated low-dimensional representations of functional connectivity (i.e., gradients) for each brain state and compared these gradients among brain states. S1 and S3 exhibited segregated network patterns, whereas S2 displayed more integrated patterns. A topological analysis based on the graph measures revealed that the integrated state (S2) exhibited strong inter-regional connectivity. Further, the two segregated states exhibited distinct patterns, with S1 being more involved in the somatomotor network and S3 being related to higher-order association areas. When we assessed the transitions between brain states, transitions between the low-level sensory (S1) and higher-order default mode states (S3), as well as between the sensory-focused segregated state (S1) and integrated state (S2), were associated with sensory/motor and memory-related tasks. In contrast, the transitions between the integrated (S2) and segregated states with higher centrality in the default mode region (S3) were found to be related to language and reward tasks. These findings indicate that the proposed approach captures changes in individual participant-level brain dynamics, thereby enabling the assessment of inherently dynamic brain systems.

Compensative inter-module functional connectivity enhancement at the latter half of verbal fluency task in patients with temporal lobe epilepsy

BACKGROUND

Previous studies proposed that disrupted dynamic interaction between language subsystems diminishes temporal lobe epilepsy (TLE) patients' adaptability to changing cognitive loads. However, how the interaction is dynamically performed remained unclear. Due to the graphic syllabic logographic nature of Chinese characters, the Chinese Character verbal fluency (VFC) task provides changing demands throughout the task, being an ideal tool to analyze the dynamic interaction of language subsystems.

METHODS

Twenty-nine neurotypical controls and 58 patients with TLE from an ongoing cohort participated in this study. Functional MRI data was collected while participants performed a Chinese verbal fluency task. Functional connectivity alteration from the first to the second half of the task block were compared between controls and patients. Regions with significant functional connectivity changes are clustered into modules. The recruitment and integration of modules were calculated with sliding-window approaches and compared.

RESULTS

We captured the left frontal and anterior temporal lobe modules. The functional connectivity between the left frontal and anterior temporal modules was enhanced in the latter half of the VFC task in patients but not controls (p < 0.05, FDR-corrected). Meanwhile, TLE's functional connectivity within the anterior temporal module was impaired throughout the task (p = 0.04), and the two modules were more integrated in patients (p = 0.008). Intermodular connectivity enhancement in patients was correlated with better verbal fluency performance (p = 0.03, FDR-corrected).

CONCLUSION

We observed diminished intramodular and enhanced intermodular dynamic functional connectivity in patients with TLE. The enhanced intermodular functional connectivity at the latter half of the task represents a compensative process, a potential intervention target for language decline in TLE.

Hidden time-patterns in cyclic human movements: a matter of temporal Fibonacci sequence generation and harmonization

Fibonacci sequences are sequences of numbers whose first two elements are 0, 1, and such that, starting from the third number, every element of the sequence is the sum of the previous two. They are of finite length when the number of elements of the sequence is finite. Furthermore, Fibonacci sequences are named generalized Fibonacci sequences when they are generated by two positive integers-called seeds-that do not necessarily equal 0 and 1. This relaxation provides the analyst with larger degrees of freedom if the elements of the Fibonacci sequences have to refer to the durations of the sub-phases of a physical movement or gesture that differ from 0 and 1. Indeed, by taking inspiration from their use of symmetric walking-where the stance duration is the sum of the double support and swing durations and, in turn, the duration of the entire gait cycle is the sum of the stance and swing durations-, generalized Fibonacci sequences of finite length have been very recently adopted to extend the resulting original walking gait characterization to gestures in elite swimmers and tennis players, by accordingly associating the durations of the sub-phases of the gesture to the elements of such sequences. This holds true within movement-automatization-allowable scenarios, namely, within scenarios in which no external disturbances or additional constraints affect the natural repeatability of movements: at a comfortable speed in walking, at a medium pace in swimming, and under no need for lateral/frontal movements of the entire body in tennis forehand execution or no wind in the serve shot. Now, in such sequences of sub-phase durations of a physical movement or gesture, the golden ratio has been further found to characterize hidden self-similar patterns, namely, patterns in which all the ratios between two consecutive elements of the sequence are surprisingly equal, thus representing a harmonic and mostly aesthetical gesture that admits a perfectly self-similar sub-phase partition in terms of time durations. In such a case, the larger scale structure within the gesture resembles the smaller scale structure so that the brain can aesthetically resort to the minimum amount of information for the movement temporal design. In the framework of how cognitive factors such as working memory and executive control facilitate motor learning and adaptation, this paper addresses, for the first time in the literature, the open problem of providing a complete mathematical understanding of the automatic generation process at the root of such hidden Fibonacci sequence-based and self-similar patterns appearing in the aforementioned cyclic human movements. Data referring to walking and tennis playing are used to illustrate the effectiveness of the proposed approach.

A reduction in energy costs induces integrated states of brain dynamics

In the human brain, interactions between multiple regions organize stable dynamics that enable enhanced cognitive processes. However, it is unclear how collective activities in the brain network can generate stable states while preserving unity across the whole brain scale under successive environmental changes. Herein, a network model was introduced in which network connections were adjusted to reduce the energy consumption level by avoiding excess changes in the activated states of each region during successive interactions. For time series data obtained from fMRI images, a connection matrix was generated by a simulation, and the predictions made by this matrix yielded accurate results relative to the real data. In this simulation, the adjustment process was activity-dependent, in which the interregional connections between intense active regions were reinforced to prohibit free behaviours. This resulted in a reduced excess energy loss and the integration of multiple regional activities into integrated dynamic states under constraints imposed by other regions. It was suggested that the simple rule of saving excess energy costs plays an important role in the mechanism that regulates large-scale brain networks and dynamics.

Binary and weighted network analysis and its applications to functional connectivity in subjective memory complaints: A resting-state fMRI approach

INTRODUCTION

Despite normal cognitive abilities, subjective memory complaints (SMC) are common in older adults and are linked to mild memory impairment. SMC may be a sign of subtle cognitive decline and underlying pathological changes, according to research; however, there is not enough data to support the use of resting-state functional connectivity to identify early changes in the brain network before cognitive symptoms manifest.

MATERIALS AND METHODS

In this study, the topological structure and regional connectivity of the brain functional network in SMC individuals were analyzed using graph theoretical analysis in both weighted and binarized network models, alongside healthy controls. Resting-state functional magnetic resonance imaging data was collected from 24 SMCs and 39 cognitively normal people. Analysis of both binary and weighted graph theory was done using the Dosenbach Atlas as a basis based on area under curves (AUCs) for the graph network parameters, which comprised of six node metrics and nine global measures. We then performed group comparisons using statistical analyses based on Network-Based Statistics functional connectomes. Finally, the relationship between global graph measures and cognition was examined using neuropsychological tests such as the Mini-Mental State Examination (MMSE) and the Alzheimer Disease Assessment Scale (ADAS score).

RESULTS

The topologic properties of brain functional connectomes at both global and nodal levels were tested. The SMC patients showed increased functional connectivity in clustering coefficient global (P < 0.00001), global efficiency (P < 0.00001), and normalized characteristic path length or Lambda (P < 0.00001), while there was decreased functional connectivity in Modularity (P < 0.04542), characteristic path length (0.00001), and small-worldness or Sigma (P < 0.00001) in binary networks model. In contrast, SMC patients only exhibited decreased functional connectivity in Assortativity identified by weighted networks model. Furthermore, some brain regions located in the default mode network, sensorimotor, occipital, and cingulo-opercular network in SMC patients showed altered nodal centralities. No significant correlation was found between global metrics and MMSE scores in both groups using binary metrics. However, in cognitively normal individuals, negative correlation was observed with weighted metrics in global and local efficiency and Lambda. While In SMC patients, a significant positive correlation was found between ADAS scores and local efficiency in both binary and weighted metrics.

CONCLUSION

The findings suggest that functional impairments in SMC patients might be associated with disruptions in the global and regional topological organization of the brain's functional connectome, offering new and significant insights into the pathophysiological mechanisms underlying SMC.

Evaluating the evolution and inter-individual variability of infant functional module development from 0 to 5 yr old

The segregation and integration of infant brain networks undergo tremendous changes due to the rapid development of brain function and organization. In this paper, we introduce a novel approach utilizing Bayesian modeling to analyze the dynamic development of functional modules in infants over time. This method retains inter-individual variability and, in comparison with conventional group averaging techniques, more effectively detects modules, taking into account the stationarity of module evolution. Furthermore, we explore gender differences in module development under awake and sleep conditions by assessing modular similarities. Our results show that female infants demonstrate more distinct modular structures between these 2 conditions, possibly implying relative quiet and restful sleep compared with male infants.

Dynamic and Static Functional Gradient in Temporal Lobe Epilepsy With Hippocampal Sclerosis Versus Healthy Controls

AIMS

The gradient captures the continuous transitions in connectivity, representing an intrinsic hierarchical architecture of the brain. Previous works hinted at the dynamics of the gradient but did not verify them. Cognitive impairment is a common comorbidity of temporal lobe epilepsy (TLE). Gradient techniques provide a framework that could promote the understanding of the neural correlations of cognitive decline.

METHODS

Thirty patients with TLE and hippocampal sclerosis and 29 matched healthy controls (HC) were investigated with verbal fluency task-based functional MRI and gradient techniques. The correlation between task-based activation/deactivation and healthy gradients, task-based gradients, and dynamic features calculated with sliding window approaches was compared between HC and TLE.

RESULTS

The allegiance in the real data of HC and TLE was more widespread compared to static null models. TLE has lower dynamic recruitment of gradient, atypical activation-gradient correlation, and contracted principal gradient. Correlation analysis proved that the reconfiguration of principal gradient did not drive the reorganization of activation. The atypical activation pattern and impaired recruitment were correlated with cognition scales in TLE.

DISCUSSION

The principal gradient is dynamic. TLE disrupted activation/deactivation patterns, the principal gradient, and the dynamics of the gradient, which were correlated with cognitive decline.

Intrinsic brain mapping of cognitive abilities: A multiple-dataset study on intelligence and its components

This study investigates how functional brain network features contribute to general intelligence and its cognitive components by analyzing three independent cohorts of healthy participants. Cognitive scores were derived from 1) the Wechsler Adult Intelligence Scale (WAIS-IV), 2) the Raven Standard Progressive Matrices (RPM), and 3) the NIH and Penn cognitive batteries from the Human Connectome Project. Factor analysis on the NIH and Penn cognitive batteries yielded latent variables that closely resembled the content of the WAIS-IV indices and RPM. We employed graph theory and a multi-resolution network analysis by varying the modularity parameter (γ) to investigate hierarchical brain-behavior relationships across different scales of brain organization. Brain-behavior associations were quantified using multi-level robust regression analyses to accommodate variability and confounds at the subject-level, node-level, and resolution-level. Our findings reveal consistent brain-behavior relationships across the datasets. Nodal efficiency in fronto-parietal sensorimotor regions consistently played a pivotal role in fluid reasoning, whereas efficiency in visual networks was linked to executive functions and memory. A broad, low-resolution 'task-positive' network emerged as predictive of full-scale IQ scores, indicating a hierarchical brain-behavior coding. Conversely, increased cross-network connections involving default mode and subcortical-limbic networks were associated with reductions in both general and specific cognitive performance. These outcomes highlight the relevance of network efficiency and integration, as well as of the hierarchical organization in supporting specific aspects of intelligence, while recognizing the inherent complexity of these relationships. Our multi-resolution network approach offers new insights into the interplay between multilayer network properties and the structure of cognitive abilities, advancing the understanding of the neural substrates of the intelligence construct.

Finding influential cores via normalized Ricci flows in directed and undirected hypergraphs with applications

Many biological and social systems are naturally represented as edge-weighted directed or undirected hypergraphs since they exhibit group interactions involving three or more system units as opposed to pairwise interactions that can be incorporated in graph-theoretic representations. However, finding influential cores in hypergraphs is still not as extensively studied as their graph-theoretic counterparts. To this end, we develop and implement a hypergraph-curvature guided discrete time diffusion process with suitable topological surgeries and edge-weight renormalization procedures for both undirected and directed weighted hypergraphs to find influential cores. We successfully apply our framework for directed hypergraphs to seven metabolic hypergraphs and our framework for undirected hypergraphs to two social (coauthorship) hypergraphs to find influential cores, thereby demonstrating the practical feasibility of our approach. In addition, we prove a theorem showing that a certain edge weight renormalization procedure in a prior research work for Ricci flows for edge-weighted graphs has the undesirable outcome of modifying the edge weights to negative numbers, thereby rendering the procedure impossible to use. This paper formulates algorithmic approaches for finding core(s) of (weighted or unweighted) directed hypergraphs.

Salient objects in a scene trigger enhanced perceptual selection and memory encoding

Rapidly detecting salient objects from surrounding environments is crucial for survival. Our study demonstrates that salient objects in visual search arrays trigger von Restorff-like effects. In a search task, participants detected a tilted target bar among distractors with EEG recordings. The results revealed that salient objects elicited the largest and earliest N2pc component, reflecting early attentional selection, which enhanced multivariate decoding of target location. Importantly, early selection of highly salient targets (25° tilt) triggered a cascade of preferential processing downstream, marked by stronger P3b components, neural synchronization, and phase-amplitude coupling between low- and high-frequency activity, along with better recall performance of target orientation. The strength of memory-related activity on the current trial predicted the vigor of the next selection event, indicating that salience-driven learning influences future attentional control. Overall, object salience in spatial arrays drives a cascade of processing, facilitating rapid learning of object relevance while humans search their environment.

Connectional axis of individual functional variability: Patterns, structural correlates, and relevance for development and cognition

The human cerebral cortex exhibits intricate interareal functional synchronization at the macroscale, with substantial individual variability in these functional connections. However, the spatial organization of functional connectivity (FC) variability across the human connectome edges and its significance in cognitive development remain unclear. Here, we identified a connectional axis in the edge-level FC variability. The variability declined continuously along this axis from within-network to between-network connections and from the edges linking association networks to those linking the sensorimotor and association networks. This connectional axis of functional variability is associated with spatial pattern of structural connectivity variability. Moreover, the connectional variability axis evolves in youth with an flatter axis slope. We also observed that the slope of the connectional variability axis was positively related to the performance in the higher-order cognition. Together, our results reveal a connectional axis in functional variability that is linked with structural connectome variability, refines during development, and is relevant to cognition.

Brain-wide dynamic coactivation states code for hand movements in the resting state

Resting brain activity, in the absence of explicit tasks, appears as distributed spatiotemporal patterns that reflect structural connectivity and correlate with behavioral traits. However, its role in shaping behavior remains unclear. Recent evidence shows that resting-state spatial patterns not only align with task-evoked topographies but also encode distinct visual (e.g., lines, contours, faces, places) and motor (e.g., hand postures) features, suggesting mechanisms for long-term storage and predictive coding. While prior research focused on static, time-averaged task activations, we examine whether dynamic, time-varying motor states seen during active hand movements are also present at rest. Three distinct motor activation states, engaging the motor cortex alongside sensory and association areas, were identified. These states appeared both at rest and during task execution but underwent temporal reorganization from rest to task. Thus, resting-state dynamics serve as strong spatiotemporal priors for task-based activation. Critically, resting-state patterns more closely resembled those associated with frequent ecological hand movements than with an unfamiliar movement, indicating a structured repertoire of movement patterns that is replayed at rest and reorganized during action. This suggests that spontaneous neural activity provides priors for future movements and contributes to long-term memory storage, reinforcing the functional interplay between resting and task-driven brain activity.

Longitudinal changes in functional connectivity networks in the first year following stroke

The functional organization of the brain consists of multiple subsystems, or modules, with dense functional communication within modules (i.e., visual, attention) and relatively sparse but vital communications between them. The two hemispheres also have strong functional communications, which presumably supports hemispheric lateralization and specialization. Subsequent to stroke, the functional organization undergoes neuroplastic changes over time. However, empirical longitudinal studies of human subjects are lacking. Here we analyzed three large-scale, whole-brain resting-state functional MRI connectivity measures: modularity, hemispheric symmetry (based on system segregation), and homotopic connectivity in a group of 17 participants at 1-month, 3- months, and 12-months after a single left-hemisphere stroke. These measures were also compared to a group of 13 age-matched healthy controls. The three measures exhibited different trajectories of change: (1) modularity steadily decreased across the 12-month period and became statistically inferior to control values at 12 months, indicating a less modular organization; (2) hemispheric symmetry values were abnormally low at 1-month and then increased significantly in the first 6 months, leveling off at levels not significantly below control levels by 12 months, suggesting that the two hemispheres diverged initially after the unilateral damage, but improved over time; and (3) homotopic connectivity exhibited a U-shaped function with a significant decrease from 1-6 months and then an increase from 6-12 months, to levels that were not significantly different from controls. The results revealed a complex picture of the dynamic changes the brain undergoes as it responds to abrupt onset damage.

Node-reconfiguring multilayer networks of human brain function

The properties of functional brain networks are heavily influenced by how the network nodes are defined. A common approach uses Regions of Interest (ROIs), which are predetermined collections of functional magnetic resonance imaging (fMRI) measurement voxels, as network nodes. Their definition is always a compromise, as static ROIs cannot capture the dynamics and the temporal reconfigurations of the brain areas. Consequently, the ROIs do not align with the functionally homogeneous regions, which can explain the very low functional homogeneity values observed for the ROIs. This is in violation of the underlying homogeneity assumption in functional brain network analysis pipelines and it can cause serious problems such as spurious network structure. We introduce the node-reconfiguring multilayer network model, where nodes represent ROIs with boundaries optimized for high functional homogeneity in each time window. In this representation, network layers correspond to time windows, intralayer links depict functional connectivity between ROIs, and interlayer link weights quantify the overlap between ROIs on different layers. The ROI optimization approach increases functional homogeneity notably, yielding an over 10-fold increase in the fraction of ROIs with high homogeneity compared to static ROIs from the Brainnetome atlas. The optimized ROIs reorganize non-trivially at short time scales of consecutive time windows and across several windows. The amount of reorganization across time windows is connected to intralayer hubness: ROIs that show intermediate levels of reorganization have stronger intralayer links than extremely stable or unstable ROIs. Our results demonstrate that reconfiguring parcellations yield more accurate network models of brain function. This supports the ongoing paradigm shift towards the chronnectome that sees the brain as a set of sources with continuously reconfiguring spatial and connectivity profiles.

Tangent space functional reconfigurations in individuals at risk for alcohol use disorder

Human brain function dynamically adjusts to ever-changing stimuli from the external environment. Studies characterizing brain functional reconfiguration are, nevertheless, scarce. Here, we present a principled mathematical framework to quantify brain functional reconfiguration when engaging and disengaging from a stop signal task (SST). We apply tangent space projection (a Riemannian geometry mapping technique) to transform the functional connectomes (FCs) of 54 participants and quantify functional reconfiguration using the correlation distance of the resulting tangent-FCs. Our goal was to compare functional reconfigurations in individuals at risk for alcohol use disorder (AUD). We hypothesized that functional reconfigurations when transitioning to/from a task would be influenced by family history of AUD (FHA) and other AUD risk factors. Multilinear regression models showed that engaging and disengaging functional reconfiguration were associated with FHA and recent drinking. When engaging in the SST after a rest condition, functional reconfiguration was negatively associated with recent drinking, while functional reconfiguration when disengaging from the SST was negatively associated with FHA. In both models, several other factors contributed to the functional reconfiguration. This study demonstrates that tangent-FCs can characterize task-induced functional reconfiguration and that it is related to AUD risk.

Patterns of neuronal synchrony in higher-order networks

Synchrony in neuronal networks is crucial for cognitive functions, motor coordination, and various neurological disorders. While traditional research has focused on pairwise interactions between neurons, recent studies highlight the importance of higher-order interactions involving multiple neurons. Both types of interactions lead to complex synchronous spatiotemporal patterns, including the fascinating phenomenon of chimera states, where synchronized and desynchronized neuronal activity coexist. These patterns are thought to resemble pathological states such as schizophrenia and Parkinson's disease, and their emergence is influenced by neuronal dynamics as well as by synaptic connections and network structure. This review integrates the current understanding of how pairwise and higher-order interactions contribute to different synchrony patterns in neuronal networks, providing a comprehensive overview of their role in shaping network dynamics. We explore a broad range of connectivity mechanisms that drive diverse neuronal synchrony patterns, from pairwise long-range temporal interactions and time-delayed coupling to adaptive communication and higher-order, time-varying connections. We cover key neuronal models, including the Hindmarsh-Rose model, the stochastic Hodgkin-Huxley model, the Sherman model, and the photosensitive FitzHugh-Nagumo model. By investigating the emergence and stability of various synchronous states, this review highlights their significance in neurological systems and indicates directions for future research in this rapidly evolving field.

Dynamic analysis of frequency specificity in multilayer brain networks

The brain is a highly complex and delicate system, and its internal neural processes are manifested as the interweaving and superposition of multi-frequency neural signals. However, traditional brain network studies are often limited to the whole frequency band or a specific frequency band, ignoring the potentially profound impact of the diversity of information within the frequency on the dynamics of brain networks. To comprehensively and deeply analyze this phenomenon, the present study is devoted to exploring the specific performance of brain networks at different frequencies. We used the maximum overlap discrete wavelet transform technique to finely divide the time series data into the following frequency bands: scale 1 (0.125-0.25 Hz), scale 2 (0.06-0.125 Hz), scale 3 (0.03-0.06 Hz) and scale 4 (0.015-0.03 Hz). Based on these frequency bands, we constructed multilayer networks from both dynamic and static perspectives, respectively. From the dynamic perspective, we quantitatively evaluated the dynamic differences among different frequency bands using metrics such as flexibility, promiscuity, integration, and recruitment, and found that scale 3 and scale 4 bands performed particularly well. In contrast, from a static perspective, we measured the cross-frequency interaction capability between different frequency bands through metrics such as multilayer clustering coefficient and entropy of multiplexing degree, and the results show that scale 2, scale 3, and scale 4 band networks have enhanced global integration capability and local capability. In addition, we explored the correlation of gender and age with the properties of brain networks in different frequency bands. In the scale 1 frequency band, the organization of brain functions showed significant gender differences, while in the scale 2 frequency band, there was a significant correlation between age and global efficiency. By integrating the dual perspectives of time and frequency domains, this study not only reveals the critical role of frequency specificity in the brain's information processing and functional organization but also provides new perspectives for understanding the complex working mechanisms of the brain as well as gender- and age-related cognitive differences.

Brain network dynamics predict moments of surprise across contexts

We experience surprise when reality conflicts with our expectations. When we encounter such expectation violations in psychological tasks and daily life, are we experiencing completely different forms of surprise? Or is surprise a fundamental psychological process with shared neural bases across contexts? To address this question, we identified a brain network model, the surprise edge-fluctuation-based predictive model (EFPM), whose regional interaction dynamics measured with functional magnetic resonance imaging (fMRI) predicted surprise in an adaptive learning task. The same model generalized to predict surprise as a separate group of individuals watched suspenseful basketball games and as a third group watched videos violating psychological expectations. The surprise EFPM also uniquely predicts surprise, capturing expectation violations better than models built from other brain networks, fMRI measures and behavioural metrics. These results suggest that shared neurocognitive processes underlie surprise across contexts and that distinct experiences can be translated into the common space of brain dynamics.

Developmental changes in brain-wide fear memory networks

Memory retrieval involves coordinated activity across multiple brain regions. Yet how the organization of memory networks evolves throughout development remains poorly understood. In this study, we compared whole-brain functional networks that are active during contextual fear memory recall in infant, juvenile, and adult mice. Our analyses revealed that long-term memory networks change significantly across postnatal development. Infant fear memory networks are dense and heterogeneous, whereas adult networks are sparse and have a small-world topology. While hippocampal subregions were highly connected nodes at all ages, the cortex gained many functional connections across development. Different functional connections matured at different rates, but their developmental timing fell into three major categories: stepwise change between two ages, linear change across all ages, or inverted-U, with elevated functional connectivity in juveniles. Our work highlights how a subset of brain regions likely maintain important roles in fear memory encoding, but the functional connectivity of fear memory networks undergoes significant reorganization across development. Together, these results provide a blueprint for studying how correlated cellular activity in key areas distinctly regulates memory storage and retrieval across development.

Dynamic reconfiguration of brain coactivation states associated with active and lecture-based learning of university physics

Academic institutions are increasingly adopting active learning methods to enhance educational outcomes. Using functional magnetic resonance imaging (fMRI), we investigated neurobiological differences between active learning and traditional lecture-based approaches in university physics education. Undergraduate students enrolled in an introductory physics course underwent an fMRI session before and after a 15-week semester. Coactivation pattern (CAP) analysis was used to examine the temporal dynamics of brain states across different cognitive contexts, including physics conceptual reasoning, physics knowledge retrieval, and rest. CAP results identified seven distinct brain states, with contributions from frontoparietal, somatomotor, and visuospatial networks. Among active learning students, physics learning was associated with increased engagement of a somatomotor network, supporting an embodied cognition framework, while lecture-based students demonstrated stronger engagement of a visuospatial network, consistent with observational learning. These findings suggest significant neural restructuring over a semester of physics learning, with different instructional approaches preferentially modulating distinct patterns of brain dynamics.

Nucleus Accumbens Resting State Functional Connectivity is Linked to Family Income, Reward Salience, and Substance Use

Background

As a central component of the brain's reward system, nucleus accumbens (NAcc) plays a crucial role in reward salience and substance use behaviors. Changes in the NAcc are also relevant to higher rates of substance use of youth and adults from low-income backgrounds. Although resting-state functional connectivity (rsFC) of the NAcc provides valuable insights into the neural mechanisms underlying reward processing and the propensity for self-reported reward salience and substance use, research exploring the association between NAcc rsFC and brain networks beyond the default mode network (DMN) and prefrontal cortex (PFC) is limited.

Objective

To investigate the role of the resting-state functional connectivity of the NAcc with the cingulo-opercular network, sensorimotor mouth network, and sensorimotor hand network in the association between socioeconomic status, self-reported reward salience, and future substance use.

Methods

Data were obtained from the Adolescent Brain Cognitive Development (ABCD) study. NAcc rsFC with the cingulo-opercular network, sensorimotor mouth network, and sensorimotor hand network was assessed at baseline. Socioeconomic status was measured using family income. Self-reported reward salience was assessed using validated psychometric scales. Substance use outcomes were tracked longitudinally over the study period. Structural Equation Modeling was employed to examine the covariances between family income, NAcc rsFC, reward salience, and subsequent substance use.

Results

Higher baseline family income was positively associated with baseline NAcc rsFC (B = 0.092, p < 0.001) and negatively associated with baseline reward salience (B = -0.040, p = 0.036) and future substance use (B = -0.081, p < 0.001). Baseline NAcc rsFC was strongly and positively associated with reward salience (B = 0.734, p < 0.001) and future substance use up to age 13 (B = 0.124, p < 0.001). Additionally, baseline reward salience was positively associated with future substance use (Covariance = 0.176, p < 0.001).

Conclusion

The findings suggest that NAcc rsFC with brain networks beyond the DMN or PFC may contribute to the links between low parental socioeconomic status, reward salience, and substance use risk. Expanding the understanding of NAcc rsFC provides new insights into the neural mechanisms underlying these associations. These results have important implications for developing targeted interventions aimed at preventing substance use, particularly among low-income youth with heightened reward salience. Further research is needed to explore causal pathways and moderating factors influencing these relationships.

Unraveling Integration-Segregation Imbalances in Schizophrenia Through Topological High-Order Functional Connectivity

BACKGROUND

The occurrence of brain disorders correlates with detectable dysfunctions in the specialization of brain connectomics. While extensive research has explored this relationship, there is a lack of studies specifically examining the statistical correlation between the integration and segregation of psychotic brain networks using high-order networks, given the limitations of low-order networks. Moreover, these dysfunctions are believed to be linked to information imbalances in brain functions. However, our understanding of how these imbalances give rise to specific psychotic symptoms remains limited.

METHODS

This study aims to address this gap by investigating variations at the topological high-order level of the system with regard to specialization in both healthy individuals and those diagnosed with schizophrenia. By employing graph-theoretic brain network analysis, we systematically examine information integration and segregation to delineate system-level differences in the connectivity patterns of brain networks.

RESULTS

The findings indicate that topological high-order functional connectomics highlight differences in the connectome between healthy controls and schizophrenia, demonstrating increased cingulo-opercular task control and salience interactions, while the interaction between subcortical and default mode networks, dorsal attention and sensory/somatomotor mouth decreases in schizophrenia. Furthermore, we observed a reduction in the segregation of brain systems in healthy controls compared to individuals with schizophrenia, which means the balance between segregation and integration of brain networks is disrupted in schizophrenia, suggesting that restoring this balance may aid in the treatment of the disorder. Additionally, the increased segregation and decreased integration of brain systems in schizophrenia patients compared to healthy controls may serve as a novel indicator for early schizophrenia diagnosis.

CONCLUSION

We discovered that topological high-order functional connectivity highlights brain network interactions compared to low-order functional connectivity. Furthermore, we observed alterations in specific brain regions associated with schizophrenia, as well as changes in brain network information integration and segregation in individuals with schizophrenia.

Frontostriatal connectivity dynamically modulates the adaptation to environmental volatility

Humans adjust their learning strategies in changing environments by estimating the volatility of the reinforcement conditions. Here, we examine how volatility affects learning and the underlying functional brain organizations using a probabilistic reward reversal learning task. We found that the order of states was critically important; participants adjusted learning rate going from volatile to stable, but not from stable to volatile environments. Subjective volatility of the environment was encoded in the striatal reward system and its dynamic connections with the prefrontal control system. Flexibility, which captures the dynamic changes of network modularity in the brain, was higher in the environmental transition from volatile to stable than from stable to volatile. These findings suggest that behavioral adaptations and dynamic brain organizations in transitions between stable and volatile environments are asymmetric, providing critical insights into the way that people adapt to changing environments.

The role of spatial processing in verbal serial order working memory

In a sequence, at least two aspects of information-the identity of items and their serial order-are maintained and supported by distinct working memory (WM) capacities. Verbal serial order WM is modulated by spatial processing, reflected in the Spatial Position Association of Response Codes (SPoARC) effect-the left-beginning, right-end positional association between space and serial position of verbal WM memoranda. We investigated the individual differences in this modulation with both behavioral and neurobiological approaches. We administered a battery of seven behavioral tasks with 160 healthy adults and collected resting-state fMRI data from a subset of 25 participants. With a multilevel mixed-effects modeling approach, we found that the SPoARC effect's magnitude predicts individual differences in verbal serial order WM capacity and is related to spatial item WM capacity. With a graph-theory-based analytic approach, this interaction between verbal serial order WM and spatial WM was corroborated in that the level of interaction between corresponding cortical regions (indexed by modularity) was predictive of the magnitude of the SPoARC effect. Additionally, the modularity of cortical regions associated with verbal serial order WM and spatial attention predicted the SPoARC effect's magnitude, indicating the involvement of spatial attention in this modulation. Together, our findings highlight multiple sources of the interplay between verbal serial order WM and spatial processing.

Multilayer network instability underlying persistent auditory verbal hallucinations in schizophrenia

BACKGROUND

Auditory verbal hallucinations (AVHs) in schizophrenia (SCZ) are linked to brain network abnormalities. Resting-state fMRI studies often assume stable networks during scans, yet dynamic changes related to AVHs are not well understood.

METHODS

We analyzed resting-state fMRI data from 60 SCZ patients with persistent AVHs (p-AVHs), 39 SCZ patients without AVHs (n-AVHs), and 59 healthy controls (HCs), matched for demographics. Using graph theory, we constructed a time-varying modular structure of brain networks, focusing on multilayer modularity. Network switching rates at global, subnetwork, and nodal levels were compared across groups and related to AVH severity.

RESULTS

SCZ groups had higher switching rates in the subcortical network compared to HCs. Increased switching was found in two thalamic nodes for both patient groups. The p-AVH group showed lower switching rates in the default mode network (DMN) and two superior frontal gyrus nodes compared to HC and n-AVH groups. DMN switching rates negatively correlated with AVH severity in the p-AVH group.

CONCLUSIONS

Dynamic changes in brain networks, especially lower DMN and frontal region switching rates, may contribute to the development and persistence of AVHs in SCZ.

Dynamic reconfiguration of default and frontoparietal network supports creative incubation

Although creative ideas often emerge during distraction activities unrelated to the creative task, empirical research has yet to reveal the underlying neurocognitive mechanism. Using an incubation paradigm, we temporarily disengaged participants from the initial creative ideation task and required them to conduct two different distraction activities (moderately-demanding: 1-back working memory task, non-demanding: 0-back choice reaction time task), then returned them to the previous creative task. On the process of creative ideation, we calculated the representational dissimilarities between the two creative ideation phases before and after incubation period to estimate the neural representational change underlying successful incubation. The results found that, for the 0-back condition, successful incubation was associated with the representational change in precuneus (PCU), whereas for the 1-back condition, it was associated with change in rostrolateral PFC (rlPFC), suggesting the dual processes of the DMN-mediated associative thinking and PFC-mediated controlled thinking for the 0- or the 1-back incubation conditions to prompt creation. On the incubation delay, we found the successful incubation in both conditions was accompanied with network integration between frontoparietal (FP) and default mode (DM) network, further suggesting the coupling of the controlled- and associative-thinking for the incubation to work. Moreover, we found the FP-DM integration during incubation period could respectively predict the representational change in PCU or rlPFC in the creative ideation phase of 0- or 1-back condition. This means both conditions benefits from the coordination of the controlled and of the associative thinking in incubation period, but for the representational change in creative ideation phase, 1-back condition relies more on the controlled thinking, whereas the 0-back on the associative ones. Additionally, we created a neural encoding indicator to assess the degree to which temporal activities in the rlPFC or PCU during incubation delay is related to the after-incubation successful problem-solving, and we found a positive relation between this indicator and dynamic reconfiguration of brain networks. This further indicates that FP-DM integration supports creative incubation through offline processing.

Resting-state neural dynamics changes in older adults with post-COVID syndrome and the modulatory effect of cognitive training and sex

Post-COVID syndrome manifests with numerous neurological and cognitive symptoms, the precise origins of which are still not fully understood. As females and older adults are more susceptible to developing this condition, our study aimed to investigate how post-COVID syndrome alters intrinsic brain dynamics in older adults and whether biological sex and cognitive training might modulate these effects, with a specific focus on older females. The participants, aged between 60 and 75 years, were divided into three experimental groups: healthy old female, post-COVID old female and post-COVID old male. They underwent an adaptive task-switching training protocol. We analysed multiscale entropy and spectral power density of resting-state EEG data collected before and after the training to assess neural signal complexity and oscillatory power, respectively. We found no difference between post-COVID females and males before training, indicating that post-COVID similarly affected both sexes. However, cognitive training was effective only in post-COVID females and not in males, by modulating local neural processing capacity. This improvement was further evidenced by comparing healthy and post-COVID females, wherein the latter group showed increased finer timescale entropy (1-30 ms) and higher frequency band power (11-40 Hz) before training, but these differences disappeared following cognitive training. Our results suggest that in older adults with post-COVID syndrome, there is a pronounced shift from more global to local neural processing, potentially contributing to accelerated neural aging in this condition. However, cognitive training seems to offer a promising intervention method for modulating these changes in brain dynamics, especially among females.

Age-related differences of the time-varying features in the brain functional connectivity and cognitive aging

Brain functional modular organization changes with age. Considering the brain as a dynamic system, recent studies have suggested that time-varying connectivity provides more information on brain functions. However, the spontaneous reconfiguration of modular brain structures over time during aging remains poorly understood. In this study, we investigated the age-related dynamic modular reconfiguration using resting-state functional MRI data (615 participants, aged 18-88 years) from Cam-CAN. We employed a graph-based modularity analysis to investigate modular variability and the transition of nodes from one module to another in modular brain networks across the adult lifespan. Results showed that modular structure exhibits both linear and nonlinear age-related trends. The modular variability is higher in early and late adulthood, with higher modular variability in the association networks and lower modular variability in the primary networks. In addition, the whole-brain transition matrix showed that the times of transition from other networks to the dorsal attention network were the largest. Furthermore, the modular structure was closely related to the number of cognitive components and memory-related cognitive performance, suggesting a potential contribution to flexibility cognitive function. Our findings highlighted the notable dynamic characteristics in large-scale brain networks across the adult lifespan, which enhanced our understanding of the neural substrate in various cognitions during aging. These findings also provided further evidence that dedifferentiation and compensation are the outcomes of functional brain interactions.

Deep-learning based Embedding of Functional Connectivity Profiles for Precision Functional Mapping

Spatial correlation of functional connectivity profiles across matching anatomical locations in individuals is often calculated to delineate individual differences in functional networks. Likewise, spatial correlation is assessed across average functional connectivity profiles of groups to evaluate the maturity of functional networks during development. Despite its widespread use, spatial correlation is limited to comparing two samples at a time. In this study, we employed a variational autoencoder to embed functional connectivity profiles from various anatomical locations, individuals, and group averages for simultaneous comparison. We demonstrate that our variational autoencoder, with pre-trained weights, can project new functional connectivity profiles from the vertex space to a latent space with as few as two dimensions, yet still retain meaningful global and local structures in the data. Functional connectivity profiles from various functional networks occupy distinct compartments of the latent space. Moreover, the variability of functional connectivity profiles from the same anatomical location is readily captured in the latent space. We believe that this approach could be useful for visualization and exploratory analyses in precision functional mapping.

Methylphenidate stabilizes dynamic brain network organization during tasks probing attention and reward processing in stimulant-naïve children with ADHD

Children with ADHD often exhibit fluctuations in attention and heightened reward sensitivity. Psychostimulants, such as methylphenidate (MPH), improve these behaviors in many, but not all, children with ADHD. Given the extent to which psychostimulants are prescribed for children, coupled with variable efficacy on an individual level, a better understanding of the mechanisms through which MPH changes brain function and behavior is necessary. MPH's primary action is on catecholamines, including dopamine and norepinephrine. Catecholaminergic signaling can influence the tradeoff between flexibility and stability of brain function, which is one candidate mechanism through which MPH may alter brain function and behavior. Time-varying functional connectivity, which models how functional brain networks reconfigure on short timescales, can be used to examine brain flexibility versus stability, and is thus well-suited to test how MPH impacts brain function. Here, we scanned stimulant-naïve children with ADHD (8-12 years) on and off a single dose of MPH. In the MRI machine, participants completed two attention-demanding tasks: 1) a standard go/no-go task and 2) a rewarded go/no-go task. For both tasks, using a within-subjects design, we compared the degree to which brain organization changed throughout the course of the MRI scan, termed whole brain flexibility, on and off MPH. We found that whole brain flexibility decreased on MPH. Further, individuals with greater decreases in whole brain flexibility on MPH exhibited greater improvements in task performance. Together, these results provide novel insights into the neurobiological mechanisms underlying the effectiveness of MPH administration for children with ADHD.

Aberrant Modular Dynamics of Functional Networks in Schizophrenia and Their Relationship with Neurotransmitter and Gene Expression Profiles

Introduction

Numerous studies have emphasized the time-varying modular architecture of functional brain networks and its relevance to cognitive functions in healthy participants. However, how brain modular dynamics change in schizophrenia and how these alterations relate to neurotransmitter and transcriptomic signatures have not been well elucidated.

Methods

We harmonized resting-state fMRI data from a multi-site sample including 223 patients and 279 healthy controls and applied the multilayer network method to estimate the regional module switching rate (flexibility) of functional brain connectomes. We examined aberrant flexibility in patients relative to controls and explored its relations to neurotransmitter systems and postmortem gene expression.

Results

Compared with controls, patients with schizophrenia had significantly higher flexibility in the somatomotor and right visual regions, and lower flexibility in the left parahippocampal gyrus, right supramarginal gyrus, right frontal-operculum-insula, bilateral precuneus posterior cingulate cortex, and bilateral inferior parietal gyrus. These alterations were associated with multiple neurotransmitter systems and weighted gene transcriptomic profiles. The most relevant genes were preferentially enriched for biological processes of transmembrane transport and brain development, specific cell types, and previously identified schizophrenia-related genes.

Conclusions

This study reveals aberrant modular dynamics in schizophrenia and its relations to neurotransmitter systems and schizophrenia-related transcriptomic profiles, providing insights into the understanding of the pathophysiology underlying schizophrenia.

Dynamics of specialization in neural modules under resource constraints

The brain is structurally and functionally modular, although recent evidence has raised questions about the extent of both types of modularity. Using a simple, toy artificial neural network setup that allows for precise control, we find that structural modularity does not in general guarantee functional specialization (across multiple measures of specialization). Further, in this setup (1) specialization only emerges when features of the environment are meaningfully separable, (2) specialization preferentially emerges when the network is strongly resource-constrained, and (3) these findings are qualitatively similar across several different variations of network architectures. Finally, we show that functional specialization varies dynamically across time, and these dynamics depend on both the timing and bandwidth of information flow in the network. We conclude that a static notion of specialization is likely too simple a framework for understanding intelligence in situations of real-world complexity, from biology to brain-inspired neuromorphic systems.

Altered topology in cortical morphometric similarity network in recurrent major depressive disorder

BACKGROUND

Recurrent major depressive disorder (RDD) is increasingly understood to be associated with a 'disconnection' within the brain areas. But, the true understanding of cortical connectivities remains challenging. Morphometric similarity network (MSN) with multi-modal magnetic resonance imaging (MRI) could provide more information about cortical micro-architecture changes in individuals with RDD.

METHODS

Here, we integrated multi-modal features from T1-weighted imaging, diffusion tensor imaging (DTI), and inhomogeneous magnetization transfer imaging (ihMT) to construct MSN. We used graph theory to calculate topological changes in MSN and explore their relationship with the severity and recurrence. The topological properties of 42 RDD patients were compared with 56 age, sex, and education-matched healthy controls.

RESULTS

RDD subjects showed significantly decreased global efficiency, increased characteristic path length, reduced nodal efficiencies in the parietal lobe, subcortical area, and temporal lobe, increased betweenness centrality in the left supplementary motor area (SMA), decreased intra-modular connections in the parietal module and decreased inter-modular connections between the parietal and prefrontal modules. Notably, the global efficiency, characteristic path length, local efficiency of the right superior parietal gyrus, and inter-modular connections between the parietal and prefrontal modules were significantly associated with the number of depressive episodes. The betweenness centrality in SMA and the intra-modular connections in the parietal module showed a positive relationship with 17-item Hamilton Rating Scale for Depression (HAMD) scores.

CONCLUSIONS

The altered topology of MSN may serve as potential underlying pathological mechanisms of RDD. The impaired information integration of the network, particularly the disconnection within the fronto-parietal network, may be associated with the recurrence of depression. The SMA and the fronto-parietal network may be related to the severity of depression.

Reorganization of Dynamic Network in Stroke Patients and Its Potential for Predicting Motor Recovery

Objective: The investigation of brain functional network dynamics offers a promising approach to understanding network reorganization poststroke. This study aims to explore the dynamic network configurations associated with motor recovery in stroke patients and assess their predictive potential using multilayer network analysis. Methods: Resting-state functional magnetic resonance imaging data were collected from patients with subacute stroke within 2 weeks of onset and from matched healthy controls (HCs). Group-independent component analysis and a sliding window approach were utilized to construct dynamic functional networks. A multilayer network model was applied to quantify the switching rates of individual nodes, subnetworks, and the global network across the dynamic network. Correlation analyses assessed the relationship between switching rates and motor function recovery, while linear regression models evaluated the predictive potential of global network switching rate on motor recovery outcomes. Results: Stroke patients exhibited a significant increase in the switching rates of specific brain regions, including the medial frontal gyrus, precentral gyrus, inferior parietal lobule, anterior cingulate, superior frontal gyrus, and postcentral gyrus, compared to HCs. Additionally, elevated switching rates were observed in the frontoparietal network, default mode network, cerebellar network, and in the global network. These increased switching rates were positively correlated with baseline Fugl-Meyer assessment (FMA) scores and changes in FMA scores at 90 days poststroke. Importantly, the global network's switching rate emerged as a significant predictor of motor recovery in stroke patients. Conclusions: The reorganization of dynamic network configurations in stroke patients reveals crucial insights into the mechanisms of motor recovery. These findings suggest that metrics of dynamic network reorganization, particularly global network switching rate, may offer a robust predictor of motor recovery.

Cortisol awakening response prompts dynamic reconfiguration of brain networks in emotional and executive functioning

Emotion and cognition involve an intricate crosstalk of neural and endocrine systems that support dynamic reallocation of neural resources and optimal adaptation for upcoming challenges, an active process analogous to allostasis. As a hallmark of human endocrine activity, the cortisol awakening response (CAR) is recognized to play a critical role in proactively modulating emotional and executive functions. Yet, the underlying mechanisms of such proactive effects remain elusive. By leveraging pharmacological neuroimaging and hidden Markov modeling of brain state dynamics, we show that the CAR proactively modulates rapid spatiotemporal reconfigurations (state) of large-scale brain networks involved in emotional and executive functions. Behaviorally, suppression of CAR proactively impaired performance of emotional discrimination but not working memory (WM), while individuals with higher CAR exhibited better performance for both emotional and WM tasks. Neuronally, suppression of CAR led to a decrease in fractional occupancy and mean lifetime of task-related brain states dominant to emotional and WM processing. Further information-theoretic analyses on sequence complexity of state transitions revealed that a suppressed or lower CAR led to higher transition complexity among states primarily anchored in visual-sensory and salience networks during emotional task. Conversely, an opposite pattern of transition complexity was observed among states anchored in executive control and visuospatial networks during WM, indicating that CAR distinctly modulates neural resources allocated to emotional and WM processing. Our findings establish a causal link of CAR with brain network dynamics across emotional and executive functions, suggesting a neuroendocrine account for CAR proactive effects on human emotion and cognition.

Diverging network architecture of the C. elegans connectome and signaling network

The connectome describes the complete set of synaptic contacts through which neurons communicate. While the architecture of the C. elegans connectome has been extensively characterized, much less is known about the organization of causal signaling networks arising from functional interactions between neurons. Understanding how effective communication pathways relate to or diverge from the underlying structure is a central question in neuroscience. Here, we analyze the modular architecture of the C. elegans signal propagation network, measured via calcium imaging and optogenetics, and compare it to the underlying anatomical wiring measured by electron microscopy. Compared to the connectome, we find that signaling modules are not aligned with the modular boundaries of the anatomical network, highlighting an instance where function deviates from structure. An exception to this is the pharynx which is delineated into a separate community in both anatomy and signaling. We analyze the cellular compositions of the signaling architecture and find that its modules are enriched for specific cell types and functions, suggesting that the network modules are neurobiologically relevant. Lastly, we identify a "rich club" of hub neurons in the signaling network. The membership of the signaling rich club differs from the rich club detected in the anatomical network, challenging the view that structural hubs occupy positions of influence in functional (signaling) networks. Our results provide new insight into the interplay between brain structure, in the form of a complete synaptic-level connectome, and brain function, in the form of a system-wide causal signal propagation atlas.

Electroconvulsive Therapy Regulates Brain Connectome Dynamics in Patients With Major Depressive Disorder

BACKGROUND

Electroconvulsive therapy (ECT) is an effective treatment for patients with major depressive disorder (MDD), but its underlying neural mechanisms remain largely unknown. The aim of this study was to identify changes in brain connectome dynamics after ECT in MDD and to explore their associations with treatment outcome.

METHODS

We collected longitudinal resting-state functional magnetic resonance imaging data from 80 patients with MDD (50 with suicidal ideation [MDD-SI] and 30 without [MDD-NSI]) before and after ECT and 37 age- and sex-matched healthy control participants. A multilayer network model was used to assess modular switching over time in functional connectomes. Support vector regression was used to assess whether pre-ECT network dynamics could predict treatment response in terms of symptom severity.

RESULTS

At baseline, patients with MDD had lower global modularity and higher modular variability in functional connectomes than control participants. Network modularity increased and network variability decreased after ECT in patients with MDD, predominantly in the default mode and somatomotor networks. Moreover, ECT was associated with decreased modular variability in the left dorsal anterior cingulate cortex of MDD-SI but not MDD-NSI patients, and pre-ECT modular variability significantly predicted symptom improvement in the MDD-SI group but not in the MDD-NSI group.

CONCLUSIONS

We highlight ECT-induced changes in MDD brain network dynamics and their predictive value for treatment outcome, particularly in patients with SI. This study advances our understanding of the neural mechanisms of ECT from a dynamic brain network perspective and suggests potential prognostic biomarkers for predicting ECT efficacy in patients with MDD.

Brain dynamics and personality: a preliminary study

Personality can be considered a system characterized by complex dynamics that are extremely adaptive depending on continuous interactions with the environment and situations. The present preliminary study explores the dynamic interplay between brain flexibility and personality by taking the dynamic approach to personality into account, thereby drawing from Cloninger's psychobiological model. 46 healthy individuals were recruited, and their brain dynamics were assessed using magnetoencephalography (MEG) during the resting state. We identified brain activation patterns and measured brain flexibility by employing the theory of neuronal avalanches. Subsequent correlation analyses revealed a significant positive association between brain flexibility and cooperativeness, thus highlighting the role of brain reconfiguration tendencies in fostering openness, tolerance, and empathy towards others. Additionally, this preliminary finding suggests a neurobiological basis for adaptive social behaviors. Although the results are preliminary, this study provides initial insights into the intricate relationship between brain dynamics and personality, thus laying the groundwork for further research in this emerging field using a dynamic network analysis of the functional activity of the brain.

Reduced brain network segregation in alcohol use disorder: Associations with neurocognition

The human brain consists of functionally segregated networks, characterized by strong connections among regions belonging to the same network and weak connections between those of different networks. Alcohol use disorder (AUD) is associated with premature brain aging and neurocognitive impairments. Given the link between decreased brain network segregation and age-related cognitive decline, we hypothesized lower brain segregation in patients with AUD than healthy controls (HCs). Thirty AUD patients (9 females, 21 males) and 61 HCs (35 females, 26 males) underwent resting-state functional MRI (rs-fMRI), whose data were processed to assess segregation within the brain sensorimotor and association networks. We found that, compared to HCs, AUD patients had significantly lower segregation in both brain networks as well as poorer performance on a spatial working memory task. In the HC group, brain network segregation correlated negatively with age and positively with spatial working memory. Our findings suggest reduced brain network segregation in individuals with AUD that may contribute to cognitive impairment and is consistent with premature brain aging in this population.

Enhanced brain network flexibility by physical exercise in female methamphetamine users

Methamphetamine (MA) abuse is increasing worldwide, and evidence indicates that MA causes degraded cognitive functions such as executive function, attention, and flexibility. Recent studies have shown that regular physical exercise can ameliorate the disturbed functions. However, the potential functional network alterations resulting from physical exercise have not been extensively studied in female MA users. We collaborated with a drug rehabilitation center for this study to investigate changes in brain activity and network dynamics after two types of acute and long-term exercise interventions based on 64-channel electroencephalogram recordings of seventy-nine female MA users, who were randomly divided into three groups: control group (CG), dancing group (DG) and bicycling group (BG). Over a 12-week period, we observed a clear drop in the rate of brain activity in the exercise groups, especially in the frontal and temporal regions in the DG and the frontal and occipital regions in the BG, indicating that exercise might suppress hyperactivity and that different exercise types have distinct impacts on brain networks. Importantly, both exercise groups demonstrated enhancements in brain flexibility and network connectivity entropy, particularly after the acute intervention. Besides, a significantly negative correlation was found between Δattentional bias and Δbrain flexibility after acute intervention in both DG and BG. Analysis strongly suggested that exercise programs can reshape patient brains into a highly energy-efficient state with a lower activity rate but higher information communication capacity and more plasticity for potential cognitive functions. These results may shed light on the potential therapeutic effects of exercise interventions for MA users.

Supplementary Information

The online version contains supplementary material available at 10.1007/s11571-022-09848-5.

Higher-order connectomics of human brain function reveals local topological signatures of task decoding, individual identification, and behavior

Traditional models of human brain activity often represent it as a network of pairwise interactions between brain regions. Going beyond this limitation, recent approaches have been proposed to infer higher-order interactions from temporal brain signals involving three or more regions. However, to this day it remains unclear whether methods based on inferred higher-order interactions outperform traditional pairwise ones for the analysis of fMRI data. To address this question, we conducted a comprehensive analysis using fMRI time series of 100 unrelated subjects from the Human Connectome Project. We show that higher-order approaches greatly enhance our ability to decode dynamically between various tasks, to improve the individual identification of unimodal and transmodal functional subsystems, and to strengthen significantly the associations between brain activity and behavior. Overall, our approach sheds new light on the higher-order organization of fMRI time series, improving the characterization of dynamic group dependencies in rest and tasks, and revealing a vast space of unexplored structures within human functional brain data, which may remain hidden when using traditional pairwise approaches.

Quantifying information stored in synaptic connections rather than in firing patterns of neural networks

A cornerstone of our understanding of both biological and artificial neural networks is that they store information in the strengths of connections among the constituent neurons. However, in contrast to the well-established theory for quantifying information encoded by the firing patterns of neural networks, little is known about quantifying information encoded by its synaptic connections. Here, we develop a theoretical framework using continuous Hopfield networks as an exemplar for associative neural networks, and data that follow mixtures of broadly applicable multivariate log-normal distributions. Specifically, we analytically derive the Shannon mutual information between the data and singletons, pairs, triplets, quadruplets, and arbitrary n-tuples of synaptic connections within the network. Our framework corroborates well-established insights about storage capacity of, and distributed coding by, neural firing patterns. Strikingly, it discovers synergistic interactions among synapses, revealing that the information encoded jointly by all the synapses exceeds the 'sum of its parts'. Taken together, this study introduces an interpretable framework for quantitatively understanding information storage in neural networks, one that illustrates the duality of synaptic connectivity and neural population activity in learning and memory.

Elevated plasma p-tau231 is associated with reduced generalization and medial temporal lobe dynamic network flexibility among healthy older African Americans

BACKGROUND

Phosphorylated tau (p-tau) and amyloid beta (Aβ) in human plasma may provide an affordable and minimally invasive method to evaluate Alzheimer's disease (AD) pathophysiology. The medial temporal lobe (MTL) is susceptible to changes in structural integrity that are indicative of the disease progression. Among healthy adults, higher dynamic network flexibility within the MTL was shown to mediate better generalization of prior learning, a measure which has been demonstrated to predict cognitive decline and neural changes in preclinical AD longitudinally. Recent developments in cognitive, neural, and blood-based biomarkers of AD risk that may correspond with MTL changes. However, there is no comprehensive study on how these generalization biomarkers, long-term memory, MTL dynamic network flexibility, and plasma biomarkers are interrelated. This study investigated (1) the relationship between long-term memory, generalization performance, and MTL dynamic network flexibility and (2) how plasma p-tau231, p-tau181, and Aβ42/Aβ40 influence generalization, long-term memory, and MTL dynamics in cognitively unimpaired older African Americans.

METHODS

148 participants (Meanage: 70.88,SDage: 6.05) were drawn from the ongoing longitudinal study, Pathways to Healthy Aging in African Americans conducted at Rutgers University-Newark. Cognition was evaluated with the Rutgers Acquired Equivalence Task (generalization task) and Rey Auditory Learning Test (RAVLT) delayed recall. MTL dynamic network connectivity was measured from functional Magnetic Resonance Imaging data. Plasma p-tau231, p-tau181, and Aβ42/Aβ40 were measured from blood samples.

RESULTS

There was a significant positive correlation between generalization performance and MTL Dynamic Network Flexibility (t = 3.372, β = 0.280, p < 0.001). There were significant negative correlations between generalization performance and plasma p-tau231 (t = -3.324, β = -0.265, p = 0.001) and p-tau181 (t = -2.408, β = -0.192, p = 0.017). A significant negative correlation was found between plasma p-tau231 and MTL Dynamic Network Flexibility (t = -2.825, β = -0.232, p = 0.005).

CONCLUSIONS

Increased levels of p-tau231 are associated with impaired generalization abilities and reduced dynamic network flexibility within the MTL. Plasma p-tau231 may serve as a potential biomarker for assessing cognitive decline and neural changes in cognitively unimpaired older African Americans.

Dynamic patterns of functional connectivity in the human brain underlie individual memory formation

Remembering our everyday experiences involves dynamically coordinating information distributed across different brain regions. Investigating how momentary fluctuations in connectivity in the brain are relevant for episodic memory formation, however, has been challenging. Here we leverage the high temporal precision of intracranial EEG to examine sub-second changes in functional connectivity in the human brain as 20 participants perform a paired associates verbal memory task. We first identify potential functional connections by selecting electrode pairs across the neocortex that exhibit strong correlations with a consistent time delay across random recording segments. We then find that successful memory formation during the task involves dynamic sub-second changes in functional connectivity that are specific to each word pair. These patterns of dynamic changes are reinstated when participants successfully retrieve the word pairs from memory. Therefore, our data provide direct evidence that specific patterns of dynamic changes in human brain connectivity are associated with successful memory formation.

The critical mediating roles of the middle temporal gyrus and ventrolateral prefrontal cortex in the dynamic processing of interpersonal emotion regulation

Interpersonal emotion regulation (IER) is a crucial ability for effectively recovering from negative emotions through social interaction. It has been emphasized that the empathy network, cognitive control network, and affective generation network sustain the deployment of IER. However, the temporal dynamics of functional connectivity among these networks of IER remains unclear. This study utilized IER task-fMRI and sliding window approach to examine both the stationary and dynamic functional connectivity (dFC) of IER. Fifty-five healthy participants were recruited for the present study. Through clustering analysis, four distinct brain states were identified in dFC. State 1 demonstrated situation modification stage of IER, with strong connectivity between affective generation and visual networks. State 2 exhibited pronounced connectivity between empathy network and both cognitive control and affective generation networks, reflecting the empathy stage of IER. Next, a 'top-down' pattern is observed between the connectivity of cognitive control and affective generation networks during the cognitive control stage of state 3. The affective response modulation stage of state 4 mainly involved connections between empathy and affective generation networks. Specifically, the degree centrality of the left middle temporal gyrus (MTG) mediated the association between one's IER tendency and the regulatory effects in state 2. The betweenness centrality of the left ventrolateral prefrontal cortex (VLPFC) mediated the association between one's IER efficiency and the regulatory effects in state 3. Altogether, these findings revealed that dynamic connectivity transitions among empathy, cognitive control, and affective generation networks, with the left VLPFC and MTG playing dominant roles, evident across the IER processing.