6
|
Hwang PM, Li C, Morra M, Lillywhite J, Muhandiram D, Gertler F, Terhorst C, Kay LE, Pawson T, Forman-Kay JD, Li SC. A "three-pronged" binding mechanism for the SAP/SH2D1A SH2 domain: structural basis and relevance to the XLP syndrome. EMBO J 2002; 21:314-23. [PMID: 11823424 PMCID: PMC125837 DOI: 10.1093/emboj/21.3.314] [Citation(s) in RCA: 76] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/05/2023] Open
Abstract
The SH2 domain protein SAP/SH2D1A, encoded by the X-linked lymphoproliferative (XLP) syndrome gene, associates with the hematopoietic cell surface receptor SLAM in a phosphorylation-independent manner. By screening a repertoire of synthetic peptides, the specificity of SAP/SH2D1A has been mapped and a consensus sequence motif for binding identified, T/S-x-x-x-x-V/I, where x represents any amino acid. Remarkably, this motif contains neither a Tyr nor a pTyr residue, a hallmark of conventional SH2 domain-ligand interactions. The structures of the protein, determined by NMR, in complex with two distinct peptides provide direct evidence in support of a "three-pronged" binding mechanism for the SAP/SH2D1A SH2 domain in contrast to the "two-pronged" binding for conventional SH2 domains. Differences in the structures of the two complexes suggest considerable flexibility in the SH2 domain, as further confirmed and characterized by hydrogen exchange studies. The structures also explain binding defects observed in disease-causing SAP/SH2D1A mutants and suggest that phosphorylation-independent interactions mediated by SAP/SH2D1A likely play an important role in the pathogenesis of XLP.
Collapse
Affiliation(s)
- Peter M. Hwang
- Departments of
Biochemistry, Chemistry and Molecular and Medical Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Department of Biochemistry, Faculty of Medicine and Dentistry, University of Western Ontario, London, Ontario N6A 5C1, Samuel Lunenfeld Research Institute, Mt Sinai Hospital, Toronto, Ontario M5G 1X5, Program in Structural Biology and Biochemistry, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada, Division of Immunology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215 and Department of Biology, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Corresponding author e-mail:
| | - Chengjun Li
- Departments of
Biochemistry, Chemistry and Molecular and Medical Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Department of Biochemistry, Faculty of Medicine and Dentistry, University of Western Ontario, London, Ontario N6A 5C1, Samuel Lunenfeld Research Institute, Mt Sinai Hospital, Toronto, Ontario M5G 1X5, Program in Structural Biology and Biochemistry, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada, Division of Immunology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215 and Department of Biology, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Corresponding author e-mail:
| | - Massimo Morra
- Departments of
Biochemistry, Chemistry and Molecular and Medical Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Department of Biochemistry, Faculty of Medicine and Dentistry, University of Western Ontario, London, Ontario N6A 5C1, Samuel Lunenfeld Research Institute, Mt Sinai Hospital, Toronto, Ontario M5G 1X5, Program in Structural Biology and Biochemistry, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada, Division of Immunology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215 and Department of Biology, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Corresponding author e-mail:
| | - Jennifer Lillywhite
- Departments of
Biochemistry, Chemistry and Molecular and Medical Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Department of Biochemistry, Faculty of Medicine and Dentistry, University of Western Ontario, London, Ontario N6A 5C1, Samuel Lunenfeld Research Institute, Mt Sinai Hospital, Toronto, Ontario M5G 1X5, Program in Structural Biology and Biochemistry, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada, Division of Immunology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215 and Department of Biology, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Corresponding author e-mail:
| | - D.Ranjith Muhandiram
- Departments of
Biochemistry, Chemistry and Molecular and Medical Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Department of Biochemistry, Faculty of Medicine and Dentistry, University of Western Ontario, London, Ontario N6A 5C1, Samuel Lunenfeld Research Institute, Mt Sinai Hospital, Toronto, Ontario M5G 1X5, Program in Structural Biology and Biochemistry, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada, Division of Immunology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215 and Department of Biology, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Corresponding author e-mail:
| | - Frank Gertler
- Departments of
Biochemistry, Chemistry and Molecular and Medical Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Department of Biochemistry, Faculty of Medicine and Dentistry, University of Western Ontario, London, Ontario N6A 5C1, Samuel Lunenfeld Research Institute, Mt Sinai Hospital, Toronto, Ontario M5G 1X5, Program in Structural Biology and Biochemistry, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada, Division of Immunology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215 and Department of Biology, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Corresponding author e-mail:
| | - Cox Terhorst
- Departments of
Biochemistry, Chemistry and Molecular and Medical Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Department of Biochemistry, Faculty of Medicine and Dentistry, University of Western Ontario, London, Ontario N6A 5C1, Samuel Lunenfeld Research Institute, Mt Sinai Hospital, Toronto, Ontario M5G 1X5, Program in Structural Biology and Biochemistry, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada, Division of Immunology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215 and Department of Biology, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Corresponding author e-mail:
| | - Lewis E. Kay
- Departments of
Biochemistry, Chemistry and Molecular and Medical Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Department of Biochemistry, Faculty of Medicine and Dentistry, University of Western Ontario, London, Ontario N6A 5C1, Samuel Lunenfeld Research Institute, Mt Sinai Hospital, Toronto, Ontario M5G 1X5, Program in Structural Biology and Biochemistry, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada, Division of Immunology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215 and Department of Biology, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Corresponding author e-mail:
| | - Tony Pawson
- Departments of
Biochemistry, Chemistry and Molecular and Medical Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Department of Biochemistry, Faculty of Medicine and Dentistry, University of Western Ontario, London, Ontario N6A 5C1, Samuel Lunenfeld Research Institute, Mt Sinai Hospital, Toronto, Ontario M5G 1X5, Program in Structural Biology and Biochemistry, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada, Division of Immunology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215 and Department of Biology, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Corresponding author e-mail:
| | - Julie D. Forman-Kay
- Departments of
Biochemistry, Chemistry and Molecular and Medical Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Department of Biochemistry, Faculty of Medicine and Dentistry, University of Western Ontario, London, Ontario N6A 5C1, Samuel Lunenfeld Research Institute, Mt Sinai Hospital, Toronto, Ontario M5G 1X5, Program in Structural Biology and Biochemistry, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada, Division of Immunology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215 and Department of Biology, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Corresponding author e-mail:
| | - Shun-Cheng Li
- Departments of
Biochemistry, Chemistry and Molecular and Medical Genetics, University of Toronto, Toronto, Ontario M5S 1A8, Department of Biochemistry, Faculty of Medicine and Dentistry, University of Western Ontario, London, Ontario N6A 5C1, Samuel Lunenfeld Research Institute, Mt Sinai Hospital, Toronto, Ontario M5G 1X5, Program in Structural Biology and Biochemistry, The Hospital for Sick Children, Toronto, Ontario M5G 1X8, Canada, Division of Immunology, Beth Israel Deaconess Medical Center, Harvard Medical School, Boston, MA 02215 and Department of Biology, Massachusetts Institute of Technology, 77 Massachusetts Avenue, Cambridge, MA 02139, USA Corresponding author e-mail:
| |
Collapse
|