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For: Collobiano SAD, Christensen K, Jensen HJ. The tangled nature model as an evolving quasi-species model. ACTA ACUST UNITED AC 2003. [DOI: 10.1088/0305-4470/36/4/302] [Citation(s) in RCA: 39] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Number Cited by Other Article(s)
1
Solé R, Sardanyés J, Elena SF. Phase transitions in virology. REPORTS ON PROGRESS IN PHYSICS. PHYSICAL SOCIETY (GREAT BRITAIN) 2021;84:115901. [PMID: 34584031 DOI: 10.1088/1361-6633/ac2ab0] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/28/2021] [Accepted: 09/28/2021] [Indexed: 06/13/2023]
2
The evolution of ecosystem ascendency in a complex systems based model. J Theor Biol 2017;428:18-25. [PMID: 28610834 DOI: 10.1016/j.jtbi.2017.06.010] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/11/2017] [Revised: 04/19/2017] [Accepted: 06/09/2017] [Indexed: 11/22/2022]
3
Schulman LS. Bacterial resistance to antibodies: a model evolutionary study. J Theor Biol 2017;417:61-67. [PMID: 28104347 DOI: 10.1016/j.jtbi.2017.01.022] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2016] [Revised: 01/02/2017] [Accepted: 01/16/2017] [Indexed: 11/20/2022]
4
Punctuated equilibrium as an emergent process and its modified thermodynamic characterization. J Theor Biol 2017;412:113-122. [PMID: 27984080 DOI: 10.1016/j.jtbi.2016.10.008] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2016] [Revised: 10/05/2016] [Accepted: 10/21/2016] [Indexed: 12/31/2022]
5
Vázquez P, del Río JA, Cedano KG, Martínez M, Jensen HJ. An Entangled Model for Sustainability Indicators. PLoS One 2015;10:e0135250. [PMID: 26295948 PMCID: PMC4546502 DOI: 10.1371/journal.pone.0135250] [Citation(s) in RCA: 14] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/06/2015] [Accepted: 07/20/2015] [Indexed: 11/18/2022]  Open
6
Stabilization Methods for a Multiagent System with Complex Behaviours. COMPUTATIONAL INTELLIGENCE AND NEUROSCIENCE 2015;2015:236285. [PMID: 26097491 PMCID: PMC4444567 DOI: 10.1155/2015/236285] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 11/29/2014] [Accepted: 04/27/2015] [Indexed: 11/18/2022]
7
Leon F. Design and evaluation of a multiagent interaction protocol generating behaviours with different levels of complexity. Neurocomputing 2014. [DOI: 10.1016/j.neucom.2014.04.058] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
8
Positive interactions and the emergence of community structure in metacommunities. J Theor Biol 2010;266:419-29. [DOI: 10.1016/j.jtbi.2010.07.003] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2009] [Revised: 06/09/2010] [Accepted: 07/07/2010] [Indexed: 11/21/2022]
9
Jones D, Jensen HJ, Sibani P. Tempo and mode of evolution in the tangled nature model. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2010;82:036121. [PMID: 21230153 DOI: 10.1103/physreve.82.036121] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2010] [Revised: 07/11/2010] [Indexed: 05/30/2023]
10
Jensen HJ, Arcaute E. Complexity, collective effects, and modeling of ecosystems: formation, function, and stability. Ann N Y Acad Sci 2010;1195 Suppl 1:E19-26. [DOI: 10.1111/j.1749-6632.2009.05416.x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
11
Murase Y, Shimada T, Ito N, Rikvold PA. Random walk in genome space: a key ingredient of intermittent dynamics of community assembly on evolutionary time scales. J Theor Biol 2010;264:663-72. [PMID: 20362586 DOI: 10.1016/j.jtbi.2010.03.043] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/19/2009] [Revised: 03/29/2010] [Accepted: 03/29/2010] [Indexed: 11/17/2022]
12
Murase Y, Shimada T, Ito N, Rikvold PA. Effects of demographic stochasticity on biological community assembly on evolutionary time scales. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2010;81:041908. [PMID: 20481754 DOI: 10.1103/physreve.81.041908] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/10/2009] [Revised: 01/25/2010] [Indexed: 05/29/2023]
13
Filotas E, Grant M, Parrott L, Rikvold PA. The effect of positive interactions on community structure in a multi-species metacommunity model along an environmental gradient. Ecol Modell 2010. [DOI: 10.1016/j.ecolmodel.2009.12.005] [Citation(s) in RCA: 32] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
14
Rikvold PA. Complex dynamics in coevolution models with ratio-dependent functional response. ECOLOGICAL COMPLEXITY 2009. [DOI: 10.1016/j.ecocom.2009.08.007] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
15
Swanack TM, Grant WE, Fath BD. On the use of multi-species NK models to explore ecosystem development. Ecol Modell 2008. [DOI: 10.1016/j.ecolmodel.2008.07.022] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/01/2022]
16
Filotas E, Grant M, Parrott L, Rikvold PA. Community-driven dispersal in an individual-based predator–prey model. ECOLOGICAL COMPLEXITY 2008. [DOI: 10.1016/j.ecocom.2008.01.002] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
17
Correlation, selection and the evolution of species networks. Ecol Modell 2007. [DOI: 10.1016/j.ecolmodel.2007.06.016] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
18
Rikvold PA. Self-optimization, community stability, and fluctuations in two individual-based models of biological coevolution. J Math Biol 2007;55:653-77. [PMID: 17534620 DOI: 10.1007/s00285-007-0101-y] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/25/2006] [Revised: 01/18/2007] [Indexed: 10/23/2022]
19
Rikvold PA, Sevim V. Individual-based predator-prey model for biological coevolution: fluctuations, stability, and community structure. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2007;75:051920. [PMID: 17677111 DOI: 10.1103/physreve.75.051920] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/06/2006] [Revised: 04/12/2007] [Indexed: 05/16/2023]
20
Lawson D, Jensen HJ, Kaneko K. Diversity as a product of inter-specific interactions. J Theor Biol 2006;243:299-307. [PMID: 16930624 DOI: 10.1016/j.jtbi.2006.07.007] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/20/2005] [Revised: 07/10/2006] [Accepted: 07/11/2006] [Indexed: 10/24/2022]
21
The Tangled Nature model with inheritance and constraint: Evolutionary ecology restricted by a conserved resource. ECOLOGICAL COMPLEXITY 2006. [DOI: 10.1016/j.ecocom.2006.06.001] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]
22
Lawson D, Jensen HJ. The species–area relationship and evolution. J Theor Biol 2006;241:590-600. [PMID: 16458929 DOI: 10.1016/j.jtbi.2005.12.018] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2005] [Revised: 12/21/2005] [Accepted: 12/27/2005] [Indexed: 10/25/2022]
23
Sevim V, Rikvold PA. Effects of correlated interactions in a biological coevolution model with individual-based dynamics. ACTA ACUST UNITED AC 2005. [DOI: 10.1088/0305-4470/38/43/005] [Citation(s) in RCA: 18] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
24
Chowdhury D, Stauffer D. Evolutionary ecology in silico: Does mathematical modelling help in understanding 'generic' trends? J Biosci 2005;30:277-87. [PMID: 15886463 DOI: 10.1007/bf02703709] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
25
Anderson PE, Jensen HJ. Network properties, species abundance and evolution in a model of evolutionary ecology. J Theor Biol 2005;232:551-8. [PMID: 15588635 DOI: 10.1016/j.jtbi.2004.03.029] [Citation(s) in RCA: 28] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/29/2003] [Revised: 02/20/2004] [Accepted: 03/18/2004] [Indexed: 11/22/2022]
26
Zia RKP, Rikvold PA. Fluctuations and correlations in an individual-based model of biological coevolution. ACTA ACUST UNITED AC 2004. [DOI: 10.1088/0305-4470/37/19/003] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
27
Kamp C. A quasispecies approach to viral evolution in the context of an adaptive immune system. Microbes Infect 2004;5:1397-405. [PMID: 14670453 DOI: 10.1016/j.micinf.2003.10.001] [Citation(s) in RCA: 17] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
28
Rikvold PA, Zia RKP. Punctuated equilibria and 1/f noise in a biological coevolution model with individual-based dynamics. PHYSICAL REVIEW. E, STATISTICAL, NONLINEAR, AND SOFT MATTER PHYSICS 2003;68:031913. [PMID: 14524809 DOI: 10.1103/physreve.68.031913] [Citation(s) in RCA: 23] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/17/2003] [Indexed: 05/24/2023]
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