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For: Higgs PG, Pudritz RE. A thermodynamic basis for prebiotic amino acid synthesis and the nature of the first genetic code. Astrobiology 2009;9:483-90. [PMID: 19566427 DOI: 10.1089/ast.2008.0280] [Citation(s) in RCA: 118] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Number Cited by Other Article(s)
1
Molland DP, Rhyu IB, Wade J, Schnell JR. Bivalent Surface Attachment via Cysteine Thiol Results in Efficient and Stereoselective Abiotic Peptide Synthesis. JACS AU 2025;5:1922-1931. [PMID: 40313818 PMCID: PMC12041950 DOI: 10.1021/jacsau.5c00153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/10/2025] [Revised: 03/21/2025] [Accepted: 03/25/2025] [Indexed: 05/03/2025]
2
Wipf S, Mabey P, Urso RG, Wolf S, Stok A, Ricco AJ, Quinn RC, Mattioda AL, Jones NC, Hoffmann SV, Cottin H, Chaput D, Ehrenfreund P, Elsaesser A. Photochemical Evolution of Alanine in Association with the Martian Soil Analog Montmorillonite: Insights Derived from Experiments Conducted on the International Space Station. ASTROBIOLOGY 2025;25:97-114. [PMID: 39869065 DOI: 10.1089/ast.2024.0034] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/28/2025]
3
Cao C, Qiu X, Yang Z, Jin Y. New insights into the evolution and function of the UMAMIT (USUALLY MULTIPLE ACIDS MOVE IN AND OUT TRANSPORTER) gene family. JOURNAL OF PLANT RESEARCH 2025;138:3-17. [PMID: 39531163 DOI: 10.1007/s10265-024-01596-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/05/2024] [Accepted: 10/31/2024] [Indexed: 11/16/2024]
4
Wehbi S, Wheeler A, Morel B, Manepalli N, Minh BQ, Lauretta DS, Masel J. Order of amino acid recruitment into the genetic code resolved by last universal common ancestor's protein domains. Proc Natl Acad Sci U S A 2024;121:e2410311121. [PMID: 39665745 DOI: 10.1073/pnas.2410311121] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2024] [Accepted: 11/13/2024] [Indexed: 12/13/2024]  Open
5
Codispoti S, Yamaguchi T, Makarov M, Giacobelli VG, Mašek M, Kolář MH, Sanchez Rocha AC, Fujishima K, Zanchetta G, Hlouchová K. The interplay between peptides and RNA is critical for protoribosome compartmentalization and stability. Nucleic Acids Res 2024;52:12689-12700. [PMID: 39340303 PMCID: PMC11551759 DOI: 10.1093/nar/gkae823] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2024] [Revised: 09/04/2024] [Accepted: 09/10/2024] [Indexed: 09/30/2024]  Open
6
Su M, Roberts SJ, Sutherland JD. RNA-directed peptide synthesis across a nicked loop. Nucleic Acids Res 2024;52:11415-11422. [PMID: 39164017 PMCID: PMC11514466 DOI: 10.1093/nar/gkae702] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2024] [Revised: 07/23/2024] [Accepted: 08/06/2024] [Indexed: 08/22/2024]  Open
7
Esposito J, Kakar J, Khokhar T, Noll-Walker T, Omar F, Christen A, James Cleaves H, Sandora M. Comparing the complexity of written and molecular symbolic systems. Biosystems 2024;244:105297. [PMID: 39154841 DOI: 10.1016/j.biosystems.2024.105297] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/24/2024] [Revised: 08/11/2024] [Accepted: 08/11/2024] [Indexed: 08/20/2024]
8
Kocher CD, Dill KA. Origins of Life: The Protein Folding Problem all over again? Proc Natl Acad Sci U S A 2024;121:e2315000121. [PMID: 39133848 PMCID: PMC11348307 DOI: 10.1073/pnas.2315000121] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/29/2024]  Open
9
Hlouchová K. Peptides En Route from Prebiotic to Biotic Catalysis. Acc Chem Res 2024;57:2027-2037. [PMID: 39016062 PMCID: PMC11308367 DOI: 10.1021/acs.accounts.4c00137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/29/2024] [Revised: 05/24/2024] [Accepted: 07/03/2024] [Indexed: 07/18/2024]
10
Wei W, Chu F, Chen G, Zhou S, Sun C, Feng H, Pan Y. Prebiotic Formation of Peptides Through Bubbling and Arc Plasma. Chemistry 2024;30:e202401809. [PMID: 38802327 DOI: 10.1002/chem.202401809] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2024] [Revised: 05/26/2024] [Accepted: 05/27/2024] [Indexed: 05/29/2024]
11
Di Giulio M. Theories of the origin of the genetic code: Strong corroboration for the coevolution theory. Biosystems 2024;239:105217. [PMID: 38663520 DOI: 10.1016/j.biosystems.2024.105217] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/21/2024] [Revised: 04/16/2024] [Accepted: 04/18/2024] [Indexed: 04/29/2024]
12
Marshall LK, Fahrenbach AC, Thordarson P. RNA-Binding Peptides Inspired by the RNA Recognition Motif. ACS Chem Biol 2024;19:243-248. [PMID: 38314708 DOI: 10.1021/acschembio.3c00694] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2024]
13
Skene KR. Systems theory, thermodynamics and life: Integrated thinking across ecology, organization and biological evolution. Biosystems 2024;236:105123. [PMID: 38244715 DOI: 10.1016/j.biosystems.2024.105123] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/02/2023] [Revised: 01/15/2024] [Accepted: 01/15/2024] [Indexed: 01/22/2024]
14
Yarus M. Ordering events in a developing genetic code. RNA Biol 2024;21:1-8. [PMID: 38169326 PMCID: PMC10766418 DOI: 10.1080/15476286.2023.2299615] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Revised: 12/18/2023] [Accepted: 12/20/2023] [Indexed: 01/05/2024]  Open
15
Brown SM, Mayer-Bacon C, Freeland S. Xeno Amino Acids: A Look into Biochemistry as We Do Not Know It. Life (Basel) 2023;13:2281. [PMID: 38137883 PMCID: PMC10744825 DOI: 10.3390/life13122281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2023] [Revised: 11/18/2023] [Accepted: 11/20/2023] [Indexed: 12/24/2023]  Open
16
Katoh T, Suga H. A comprehensive analysis of translational misdecoding pattern and its implication on genetic code evolution. Nucleic Acids Res 2023;51:10642-10652. [PMID: 37638759 PMCID: PMC10602915 DOI: 10.1093/nar/gkad707] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/25/2023] [Revised: 07/19/2023] [Accepted: 08/19/2023] [Indexed: 08/29/2023]  Open
17
Yarus M. The Genetic Code Assembles via Division and Fusion, Basic Cellular Events. Life (Basel) 2023;13:2069. [PMID: 37895450 PMCID: PMC10608286 DOI: 10.3390/life13102069] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 10/04/2023] [Accepted: 10/07/2023] [Indexed: 10/29/2023]  Open
18
Carr CE, Ramírez-Colón JL, Duzdevich D, Lee S, Taniguchi M, Ohshiro T, Komoto Y, Soderblom JM, Zuber MT. Solid-State Single-Molecule Sensing with the Electronic Life-Detection Instrument for Enceladus/Europa (ELIE). ASTROBIOLOGY 2023;23:1056-1070. [PMID: 37782210 DOI: 10.1089/ast.2022.0119] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/03/2023]
19
Allen JL, Sanders TJ, Horvat J, Lewis RA, Rule KC. Determination of Vibrational Modes of l-Alanine Single Crystals by a Combination of Terahertz Spectroscopy Measurements and Density Functional Calculations. PHYSICAL REVIEW LETTERS 2023;130:226901. [PMID: 37327443 DOI: 10.1103/physrevlett.130.226901] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/03/2022] [Accepted: 03/17/2023] [Indexed: 06/18/2023]
20
Brown SM, Voráček V, Freeland S. What Would an Alien Amino Acid Alphabet Look Like and Why? ASTROBIOLOGY 2023;23:536-549. [PMID: 37022727 DOI: 10.1089/ast.2022.0107] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/04/2023]
21
Makarov M, Sanchez Rocha AC, Krystufek R, Cherepashuk I, Dzmitruk V, Charnavets T, Faustino AM, Lebl M, Fujishima K, Fried SD, Hlouchova K. Early Selection of the Amino Acid Alphabet Was Adaptively Shaped by Biophysical Constraints of Foldability. J Am Chem Soc 2023;145:5320-5329. [PMID: 36826345 PMCID: PMC10017022 DOI: 10.1021/jacs.2c12987] [Citation(s) in RCA: 20] [Impact Index Per Article: 10.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2022] [Indexed: 02/25/2023]
22
The Structure of Evolutionary Model Space for Proteins across the Tree of Life. BIOLOGY 2023;12:biology12020282. [PMID: 36829559 PMCID: PMC9952988 DOI: 10.3390/biology12020282] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/20/2022] [Revised: 02/04/2023] [Accepted: 02/08/2023] [Indexed: 02/12/2023]
23
Yarus M. A crescendo of competent coding (c3) contains the Standard Genetic Code. RNA (NEW YORK, N.Y.) 2022;28:1337-1347. [PMID: 35868841 PMCID: PMC9479743 DOI: 10.1261/rna.079275.122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/25/2022] [Accepted: 07/18/2022] [Indexed: 06/15/2023]
24
Błażej P, Kowalski DR, Mackiewicz D, Wnetrzak M, Aloqalaa DA, Mackiewicz P. The structure of the genetic code as an optimal graph clustering problem. J Math Biol 2022;85:9. [PMID: 35838803 DOI: 10.1007/s00285-022-01778-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2017] [Revised: 06/20/2022] [Accepted: 06/24/2022] [Indexed: 11/29/2022]
25
Janzen E, Shen Y, Vázquez-Salazar A, Liu Z, Blanco C, Kenchel J, Chen IA. Emergent properties as by-products of prebiotic evolution of aminoacylation ribozymes. Nat Commun 2022;13:3631. [PMID: 35752631 PMCID: PMC9233669 DOI: 10.1038/s41467-022-31387-0] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/05/2021] [Accepted: 06/16/2022] [Indexed: 11/24/2022]  Open
26
A Closer Look at Non-random Patterns Within Chemistry Space for a Smaller, Earlier Amino Acid Alphabet. J Mol Evol 2022;90:307-323. [PMID: 35666290 DOI: 10.1007/s00239-022-10061-5] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/10/2021] [Accepted: 05/11/2022] [Indexed: 10/18/2022]
27
Tretyachenko V, Vymětal J, Neuwirthová T, Vondrášek J, Fujishima K, Hlouchová K. Modern and prebiotic amino acids support distinct structural profiles in proteins. Open Biol 2022;12:220040. [PMID: 35728622 PMCID: PMC9213115 DOI: 10.1098/rsob.220040] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/04/2023]  Open
28
Jia TZ, Nishikawa S, Fujishima K. Sequencing the Origins of Life. BBA ADVANCES 2022;2:100049. [PMID: 37082609 PMCID: PMC10074849 DOI: 10.1016/j.bbadva.2022.100049] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2021] [Revised: 02/27/2022] [Accepted: 03/02/2022] [Indexed: 01/10/2023]  Open
29
Giacobelli VG, Fujishima K, Lepšík M, Tretyachenko V, Kadavá T, Makarov M, Bednárová L, Novák P, Hlouchová K. In vitro evolution reveals non-cationic protein-RNA interaction mediated by metal ions. Mol Biol Evol 2022;39:6524634. [PMID: 35137196 PMCID: PMC8892947 DOI: 10.1093/molbev/msac032] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
30
Fried SD, Fujishima K, Makarov M, Cherepashuk I, Hlouchova K. Peptides before and during the nucleotide world: an origins story emphasizing cooperation between proteins and nucleic acids. J R Soc Interface 2022;19:20210641. [PMID: 35135297 PMCID: PMC8833103 DOI: 10.1098/rsif.2021.0641] [Citation(s) in RCA: 28] [Impact Index Per Article: 9.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2021] [Accepted: 01/05/2022] [Indexed: 12/14/2022]  Open
31
Freeland S. Undefining life's biochemistry: implications for abiogenesis. J R Soc Interface 2022;19:20210814. [PMID: 35193384 PMCID: PMC8867283 DOI: 10.1098/rsif.2021.0814] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2021] [Accepted: 01/19/2022] [Indexed: 12/22/2022]  Open
32
Rout SK, Rhyner D, Riek R, Greenwald J. Prebiotically Plausible Autocatalytic Peptide Amyloids. Chemistry 2022;28:e202103841. [PMID: 34812556 PMCID: PMC9299922 DOI: 10.1002/chem.202103841] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2021] [Indexed: 12/19/2022]
33
From amino acid mixtures to peptides in liquid sulphur dioxide on early Earth. Nat Commun 2021;12:7182. [PMID: 34893619 PMCID: PMC8664857 DOI: 10.1038/s41467-021-27527-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/26/2021] [Accepted: 11/18/2021] [Indexed: 01/01/2023]  Open
34
Factors in Protobiomonomer Selection for the Origin of the Standard Genetic Code. Acta Biotheor 2021;69:745-767. [PMID: 34283307 DOI: 10.1007/s10441-021-09420-4] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/14/2020] [Accepted: 07/01/2021] [Indexed: 10/20/2022]
35
The Combinatorial Fusion Cascade to Generate the Standard Genetic Code. Life (Basel) 2021;11:life11090975. [PMID: 34575125 PMCID: PMC8467831 DOI: 10.3390/life11090975] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/02/2021] [Revised: 09/14/2021] [Accepted: 09/14/2021] [Indexed: 11/17/2022]  Open
36
Fitting the standard genetic code into its triplet table. Proc Natl Acad Sci U S A 2021;118:2021103118. [PMID: 34462348 PMCID: PMC8433516 DOI: 10.1073/pnas.2021103118] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
37
Martínez-Giménez JA, Tabares-Seisdedos R. Possible Ancestral Functions of the Genetic and RNA Operational Precodes and the Origin of the Genetic System. ORIGINS LIFE EVOL B 2021;51:167-183. [PMID: 34097191 DOI: 10.1007/s11084-021-09610-7] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2021] [Accepted: 05/17/2021] [Indexed: 11/24/2022]
38
Makarov M, Meng J, Tretyachenko V, Srb P, Březinová A, Giacobelli VG, Bednárová L, Vondrášek J, Dunker AK, Hlouchová K. Enzyme catalysis prior to aromatic residues: Reverse engineering of a dephospho-CoA kinase. Protein Sci 2021;30:1022-1034. [PMID: 33739538 PMCID: PMC8040869 DOI: 10.1002/pro.4068] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/04/2021] [Revised: 03/12/2021] [Accepted: 03/13/2021] [Indexed: 11/07/2022]
39
Jaramillo-Botero A, Cable ML, Hofmann AE, Malaska M, Hodyss R, Lunine J. Understanding Hypervelocity Sampling of Biosignatures in Space Missions. ASTROBIOLOGY 2021;21:421-442. [PMID: 33749334 PMCID: PMC7994429 DOI: 10.1089/ast.2020.2301] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/21/2020] [Accepted: 11/09/2020] [Indexed: 05/08/2023]
40
Did Amino Acid Side Chain Reactivity Dictate the Composition and Timing of Aminoacyl-tRNA Synthetase Evolution? Genes (Basel) 2021;12:genes12030409. [PMID: 33809136 PMCID: PMC8001834 DOI: 10.3390/genes12030409] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/17/2021] [Revised: 03/05/2021] [Accepted: 03/10/2021] [Indexed: 12/16/2022]  Open
41
Mayer-Bacon C, Freeland SJ. A broader context for understanding amino acid alphabet optimality. J Theor Biol 2021;520:110661. [PMID: 33684404 DOI: 10.1016/j.jtbi.2021.110661] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2020] [Revised: 02/23/2021] [Accepted: 02/25/2021] [Indexed: 12/21/2022]
42
The origin of the genetic code and origin of ideas. J Theor Biol 2021;516:110615. [PMID: 33545188 DOI: 10.1016/j.jtbi.2021.110615] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2020] [Revised: 01/21/2021] [Accepted: 01/26/2021] [Indexed: 11/22/2022]
43
Yarus M. Crick Wobble and Superwobble in Standard Genetic Code Evolution. J Mol Evol 2021;89:50-61. [PMID: 33409542 PMCID: PMC7884361 DOI: 10.1007/s00239-020-09985-7] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/13/2020] [Accepted: 12/11/2020] [Indexed: 12/03/2022]
44
Nesterov-Mueller A, Popov R, Seligmann H. Combinatorial Fusion Rules to Describe Codon Assignment in the Standard Genetic Code. Life (Basel) 2020;11:life11010004. [PMID: 33374866 PMCID: PMC7824455 DOI: 10.3390/life11010004] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Revised: 12/15/2020] [Accepted: 12/21/2020] [Indexed: 11/16/2022]  Open
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Prebiotically-relevant low polyion multivalency can improve functionality of membraneless compartments. Nat Commun 2020;11:5949. [PMID: 33230101 PMCID: PMC7683531 DOI: 10.1038/s41467-020-19775-w] [Citation(s) in RCA: 106] [Impact Index Per Article: 21.2] [Reference Citation Analysis] [Abstract] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2020] [Accepted: 10/27/2020] [Indexed: 12/02/2022]  Open
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Kunnev D. Origin of Life: The Point of No Return. Life (Basel) 2020;10:life10110269. [PMID: 33153087 PMCID: PMC7693465 DOI: 10.3390/life10110269] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2020] [Revised: 11/01/2020] [Accepted: 11/01/2020] [Indexed: 12/13/2022]  Open
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Velev MV. Entropy and free-energy based interpretation of the laws of supply and demand. ACTA ACUST UNITED AC 2020. [DOI: 10.1007/s43546-020-00009-6] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
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Klenner F, Postberg F, Hillier J, Khawaja N, Cable ML, Abel B, Kempf S, Glein CR, Lunine JI, Hodyss R, Reviol R, Stolz F. Discriminating Abiotic and Biotic Fingerprints of Amino Acids and Fatty Acids in Ice Grains Relevant to Ocean Worlds. ASTROBIOLOGY 2020;20:1168-1184. [PMID: 32493049 DOI: 10.1089/ast.2019.2188] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/11/2023]
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Muchowska KB, Varma SJ, Moran J. Nonenzymatic Metabolic Reactions and Life's Origins. Chem Rev 2020;120:7708-7744. [PMID: 32687326 DOI: 10.1021/acs.chemrev.0c00191] [Citation(s) in RCA: 141] [Impact Index Per Article: 28.2] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
50
Frenkel-Pinter M, Haynes JW, Mohyeldin AM, C M, Sargon AB, Petrov AS, Krishnamurthy R, Hud NV, Williams LD, Leman LJ. Mutually stabilizing interactions between proto-peptides and RNA. Nat Commun 2020;11:3137. [PMID: 32561731 PMCID: PMC7305224 DOI: 10.1038/s41467-020-16891-5] [Citation(s) in RCA: 55] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2020] [Accepted: 05/28/2020] [Indexed: 12/16/2022]  Open
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