Raman hyperspectral imaging of microfossils: potential pitfalls

Water and moganite participation in agates from Bou Hamza (Morocco)

Basalt-hosted monocentric agates from Bou Hamza (Morocco) were examined to unravel a discrete relationship between moganite content, water content, and the abundance of various types of chalcedony/quartz microtextures, so that the agate-forming process is refined. Herein, moganite content is noticeably low in length-slow chalcedony (quartzine, up to 18 wt.%), as compared with the co-occurring length-fast (LF) chalcedony (up to 31 wt.%). Such a type of disparity reflects a stabilization of the crystallization front during the formation of chalcedonic bands. Recrystallization-related quartz types (i.e. feathery and mosaic/jigsaw puzzle) show low and high moganite content (0 and up to 34 wt.%, respectively) since they have likely originated from different silica precursors (i.e. opaline and chalcedonic, respectively). Meanwhile, the initial formation of mosaic quartz can be exclusively witnessed in the so-called zebraic variety of length-fast chalcedony (i.e. with twisted fibres) that should be hence regarded as a ,,metastable" variety of silica though. The range of total water content remains quite stable across chalcedonic bands (0.5-0.6 wt%) and reaches the highest values (0.7 wt%) in feathery quartz. However, there is rather a general negative relationship between the content of molecular water and silanol-group water. This can stem from the recycling of water species following the condensation reaction of silanols within the agate geodes. The agates originated from Fe-Ti-bearing solutions that co-precipitated goethite, hematite, and rutile, but also contain minor low-grade carbonaceous material.

Mars Rover Techniques and Lower/Middle Cambrian Microbialites from South Australia: Construction, Biofacies, and Biogeochemistry

The Perseverance rover (Mars 2020) is equipped with an instrumental and analytical payload capable of identifying a broad range of organic molecules in geological samples. To determine the efficacy of these analytical techniques in recognizing important ecological and environmental signals in the rock record, this study utilized analogous equipment, including gas chromatography/mass spectrometry, Raman spectroscopy, X-ray fluorescence (XRF), Fourier transform infrared spectroscopy, along with macroscopic and petrographic observations, to examine early-middle Cambrian microbialites from the Arrowie Basin, South Australia. Morphological and petrographic observations of these carbonate successions reveal evidence of hypersaline-restricted environments. Microbialites have undergone moderate diagenesis, as supported by XRF data that show mineral assemblages, including celestine and the illitization of smectite. Raman spectral data, carbon preference indices of ∼1, and the methylphenanthrene index place the samples in the prehnite/pumpellyite metamorphic facies. Pristane and phytane are the only biomarkers that were detected in the least thermally mature samples. This research demonstrates a multitechnique approach that can yield significant geological, depositional, paleobiological, and diagenetic information that has important implications for planning future astrobiological exploration.

Raman imaging of microbial colonization in rock-some analytical aspects

Raman imaging allows one to obtain spatially resolved chemical information in a nondestructive manner. Herein, we present analytical aspects of effective in situ and in vivo Raman imaging of algae and cyanobacteria from within their native rock habitats. Specifically, gypsum and halite inhabited by endolithic communities from the hyperarid Atacama Desert were analyzed. Raman imaging of these phototrophic colonization reveals a pigment composition within the aggregates that helps in understanding some of their adaptation strategies to survive in this harsh polyextreme environment. The study is focused on methodical aspects of Raman imaging acquisition and subsequent data processing. Point imaging is compared with line imaging in terms of their image quality, spatial resolution, spectral signal-to-noise ratio, time requirements, and risk of laser-induced sample alteration. The roles of excitation wavelength, exposure time, and step size of the imaging grid on successful Raman imaging results are also discussed. Graphical abstract.

Agates from Western Atlas (Morocco)—Constraints from Mineralogical and Microtextural Characteristics

Agate samples collected from the vicinity of Asni and Agouim (Western Atlas, Morocco) were investigated using microscopic observations supported by Raman micro-spectroscopy. The agates are marked by the presence of various microtextures typical of epithermal vein deposits, including jigsaw-puzzle, feathery, and lattice-bladed. The first two indicate that the formation of agates was likely marked by recrystallization of metastable silica phases (i.e., opaline silica or massive chalcedony). The presence of lattice-bladed (after barite and calcite) quartz may be, in turn, ascribed to the boiling-related conditions that could have triggered the formation of abundant copper and iron sulfides found within silica matrix. Additionally, the local occurrence of growth lines (so-called Bambauer quartz) and intergrowth of length-slow and length-fast chalcedony are linked to the variations of physico-chemical conditions during rock formation (alkaline-acidic). According to Raman spectroscopy, silica matrix of the agates is made of α-quartz with a local admixture of moganite (from 0.0 up to 78 wt.%), but also contains numerous solid inclusions of hematite, celadonite, as well as poorly-organized carbonaceous material and rutile. These phases were likely emplaced during low-temperature hydrothermal activity of SiO2-bearing fluids that originated from post-magmatic hydrothermal activity developed within host rocks and/or meteoric waters.

Raman spectrometer for the automated scan of large painted surfaces

In this work, a novel Raman scanner capable of performing point-to-point mapping of relatively large surface of paintings is presented. This device employs an excitation wavelength of 1064 nm, and it is equipped with a high efficiency probe in order to collect the back-scattered light from each point of analysis. The use of long depth-of-field optics as well as an autofocus system allowed maintaining the best conditions for the Raman signal acquisition during the scanning, regardless of the surface irregularities. The small dimension of the optical components and the reasonable size of mechanical parts made this instrumentation particularly suitable for on-site measurements. Finally, the Raman scanner was also equipped with an online temperature control using a thermal sensor, which allows modulating automatically the output power of the laser source in order to prevent overheating and alteration effects during the scanning process. The capabilities of the Raman scanner were evaluated scanning two valuable paintings one attributed to Ambrogio Lorenzetti and the other to Duccio da Buoninsegna of the fourteenth century.

A Spectral Comparison of Jarosites Using Techniques Relevant to the Robotic Exploration of Biosignatures on Mars

The acidic sulfate-rich waters of the Meridiani Planum region were potentially a habitable environment for iron-oxidizing bacteria on ancient Mars. If life existed in this ancient martian environment, jarosite minerals precipitating in these waters may record evidence of this biological activity. Since the Meridiani jarosite is thermodynamically stable at the martian surface, any biosignatures preserved in the jarosites may be readily available for analysis in the current surface sediments during the ongoing robotic exploration of Mars. However, thermal decomposition experiments indicate that organic compound detection of sediments containing jarosite may be challenging when using pyrolysis experiments; the instrument commonly used to assess organic matter in martian samples. So, here, we assess if the biogenicity of the Meridiani-type jarosites can be determined using complimentary spectroscopic techniques also utilized during the robotic exploration of Mars, including the upcoming ExoMars2020 rover mission. An abiotic jarosite, synthesized following established protocols, and a biological jarosite counterpart, derived from a microbial enrichment culture of Rio Tinto river sediments, were used to compare four spectroscopy techniques employed in the robotic exploration of Mars (Raman spectroscopy, mid-infrared (IR) spectroscopy, visible near-infrared reflectance (VNIR) spectroscopy and Mössbauer spectroscopy) to determine if the complimentary information obtained using these instruments can help elucidate the biological influence of Meridiani-type jarosites. Raman spectral differences might be due to the presence of unreacted reagents in the synthetic spectra and not biological contributions. Reflectance (IR/VNIR) spectra might exhibit minor organic absorption contributions, but are observed in both sample spectra, and do not represent a biosignature. Mössbauer spectra show minor differences in fit parameters that are related to crystal morphology and are unrelated to the biological (i.e., organic) component of the system. Results of this study suggest that the identification of biosignatures in Meridiani-type jarosites using the in situ robotic exploration on Mars may be possible but will be challenging. Our work provides additional insight into extraterrestrial biosignature detection and data interpretation for Mars exploration and indicates that sample return missions are likely required to unequivocally resolve the possible biogenicity of the Meridiani sediments or other jarosite-containing sediments.

Characteristics and origin of agates from Płóczki Górne (Lower Silesia, Poland): A combined microscopic, micro-Raman, and cathodoluminescence study

Agates from Płóczki Górne hosted by Permian basaltic rocks are predominantly made of length-fast chalcedony, and subordinately megaquartz and quartzine. Moganite occurs in traces mainly in transparent, outer, darker regions of white-grey coloured agates. Silica matrix of agates comprises a wide variety of solid inclusions represented by celadonite, plagioclases, hematite, goethite, barite, calcite, heulandite-clinoptyloite, nontronite-saponite, and Mn-dioxides (ramsdellite). Mineral phases are locally accompanied by black aggregations of carbonaceous matter, which gives a Raman signature of disordered carbon. These organic components were probably deposited from a hydrothermal fluids at low-temperature conditions and originated from sedimentary rocks found in the surrounding area of Płóczki Górne. The abundance of various SiO₂ phases, mineral inclusions as well as various micro-textures (colloform, comb, feathery, and jigsaw-puzzle) in agates resulted from physicochemical fluctuations of SiO₂-bearing mineralizing solutions at various stages of these gems formation. Agates from Płóczki Górne formed during post-magmatic stage of basaltic host rocks evolution. Not only were the hydrothermal fluids enriched in silica, but also they contained other elements such as Na, Ca, Al, Mg, Mn, Fe, Ba, SO₄, and CO₂, which were mobilized from host rocks or surrounding area.

Spatial and spectral resolution of carbonaceous material from hematite (α-Fe2O3) using multivariate curve resolution-alternating least squares (MCR-ALS) with Raman microspectroscopic mapping: implications for the search for life on Mars

We report a novel application of multivariate analysis with Raman microspectroscopic mapping to enhance the search for life on Mars.

"Standoff Biofinder" for Fast, Noncontact, Nondestructive, Large-Area Detection of Biological Materials for Planetary Exploration

We developed a prototype instrument called the Standoff Biofinder, which can quickly locate biological material in a 500 cm(2) area from a 2 m standoff distance with a detection time of 0.1 s. All biogenic materials give strong fluorescence signals when excited with UV and visible lasers. In addition, the luminescence decay time of biogenic compounds is much shorter (<100 ns) than the micro- to millisecond decay time of transition metal ions and rare-earth ions in minerals and rocks. The Standoff Biofinder takes advantage of the short lifetime of biofluorescent materials to obtain real-time fluorescence images that show the locations of biological materials among luminescent minerals in a geological context. The Standoff Biofinder instrument will be useful for locating biological material during future NASA rover, lander, and crewed missions. Additionally, the instrument can be used for nondestructive detection of biological materials in unique samples, such as those obtained by sample return missions from the outer planets and asteroids. The Standoff Biofinder also has the capacity to detect microbes and bacteria on space instruments for planetary protection purposes.

KEY WORDS

Standoff Biofinder-Luminescence-Time-resolved fluorescence-Biofluorescence-Planetary exploration-Planetary protection-Noncontact nondestructive biodetection. Astrobiology 16, 715-729.

Fungal Ferromanganese Mineralisation in Cretaceous Dinosaur Bones from the Gobi Desert, Mongolia

Well-preserved mycelia of fungal- or saprolegnia-like biota mineralised by ferromanganese oxides were found for the first time in long bones of Late Cretaceous dinosaurs from the Gobi Desert (Nemegt Valley, Mongolia). The mycelia formed a biofilm on the wall of the bone marrow cavity and penetrated the osteon channels of the nearby bone tissue. Optical microscopy, Raman, SEM/EDS, SEM/BSE, electron microprobe and cathodoluminescence analyses revealed that the mineralisation of the mycelia proceeded in two stages. The first stage was early post-mortem mineralisation of the hyphae by Fe/Mn-oxide coatings and microconcretions. Probably this proceeded in a mildly acidic to circumneutral environment, predominantly due to heterotrophic bacteria degrading the mycelial necromass and liberating Fe and Mn sorbed by the mycelia during its lifetime. The second stage of mineralisation, which proceeded much later following the final burial of the bones in an alkaline environment, resulted from the massive precipitation of calcite and occasionally barite on the iron/manganese-oxide-coated mycelia. The mineral phases produced by fungal biofilms colonising the interiors of decaying dinosaur bones not only enhance the preservation (fossilisation) of fungal remains but can also be used as indicators of the geochemistry of the dinosaur burial sites.

Raman Imaging Spectroscopy of a Putative Microfossil from the ∼3.46 Ga Apex Chert: Insights from Quartz Grain Orientation

The utility of nondestructive laser Raman for testing the biogenicity of microfossil-like structures in ancient rocks is promising, yet results from deposits like the ∼3.46 Ga Apex chert remain contentious. The essence of the debate is that associated microstructures, which are not purported to be microfossils, also contain reduced carbon that displays Raman D- and G-band peaks similar to those seen in the purported microfossils. This has led to the hypothesis that all features including reported microfossils are due to compression of nonfossil carbon during crystal growth around quartz spherulites or more angular crystals. In this scenario, the precursor to this macromolecular carbon may or may not have been of biogenic origin, while the arcuate and linear features described would be pseudofossils. To test this hypothesis, we have undertaken 2-D micro-Raman imaging of the Eoleptonema apex holotype and associated features using instrumentation with a high spatial and spectral resolution. In addition to this, we utilized the ratio of two Raman active quartz mode intensities (I129/I461) to assess quartz grain orientation and grain-splitting artifacts. These data lead us to conclude that the holotype of Eoleptonema apex is a sheet-shaped pseudofossil that appears to be a carbon infilled intragranular crack; therefore other holotypes should be carefully reexamined for syngenicity.

Ultrastructural Heterogeneity of Carbonaceous Material in Ancient Cherts: Investigating Biosignature Origin and Preservation

Opaline silica deposits on Mars may be good target sites where organic biosignatures could be preserved. Potential analogues on Earth are provided by ancient cherts containing carbonaceous material (CM) permineralized by silica. In this study, we investigated the ultrastructure and chemical characteristics of CM in the Rhynie chert (c. 410 Ma, UK), Bitter Springs Formation (c. 820 Ma, Australia), and Wumishan Formation (c. 1485 Ma, China). Raman spectroscopy indicates that the CM has experienced advanced diagenesis or low-grade metamorphism at peak metamorphic temperatures of 150-350°C. Raman mapping and micro-Fourier transform infrared (micro-FTIR) spectroscopy were used to document subcellular-scale variation in the CM of fossilized plants, fungi, prokaryotes, and carbonaceous stromatolites. In the Rhynie chert, ultrastructural variation in the CM was found within individual fossils, while in coccoidal and filamentous microfossils of the Bitter Springs and formless CM of the Wumishan stromatolites ultrastructural variation was found between, not within, different microfossils. This heterogeneity cannot be explained by secondary geological processes but supports diverse carbonaceous precursors that experienced differential graphitization. Micro-FTIR analysis found that CM with lower structural order contains more straight carbon chains (has a lower R3/2 branching index) and that the structural order of eukaryotic CM is more heterogeneous than prokaryotic CM. This study demonstrates how Raman spectroscopy combined with micro-FTIR can be used to investigate the origin and preservation of silica-permineralized organics. This approach has good capability for furthering our understanding of CM preserved in Precambrian cherts, and potential biosignatures in siliceous deposits on Mars.