Large-sized aerobic granular biofilm: stable biotechnology to improve nitrogen removal and reduce sludge yield

Three parallel sequencing batch reactors (control, small-sized polyurethane sponge (PUS) (3.0 mm), and large-sized PUS (10.0 mm)) were used to investigate aerobic granular biofilm (AGB) characteristics. Results show that 10.0 mm PUS facilitated rapid formation of large-sized AGB (AGBL), which exhibited higher biomass concentration (8.5 g/L) and faster settling velocity (69.2-159.3 m/h) than aerobic granular sludge (AGS) (3.2 g/L and 38.6-80.0 m/h). The AGBL system also maintained long-term structural stability with a lower instability coefficient (0.004-0.018 min-1) than AGS (0.053-0.090 min-1). Additionally, during long-term operation, the AGBL system achieved excellent removal efficiencies for NH4+-N (99.6 ± 0.4 %) and total nitrogen (92.3 ± 2.6 %), and exhibited a lower sludge yield (0.05 gVSS/gCOD) than AGS (0.14 gVSS/gCOD). The larger size and compact structure of AGBL increased anoxic/anaerobic zones, enriching denitrifying and hydrolytic/fermentative bacteria. These findings highlight AGBL with large PUS as a more promising biotechnology for practical applications than conventional AGS.

Differential size-dependent response patterns and antibiotic resistance development mechanism in anammox consortia

Antibiotic resistance is a global threat to human and animal health. Anaerobic ammonia oxidation (anammox) is an efficient and innovative wastewater treatment technology, which can be served as a promising approach to teat antibiotic wastewater. This study systematically investigated effects of sulfamethazine on the performance, microbial community dynamics and the resistome in anammox systems inoculated with different-sized granular sludge. The activity and performance of small (< 0.5 mm) anammox granules were more susceptible to sulfamethazine stress than those of medium (0.5-1.0 mm) and large (1.0-2.0 mm) granules. Sulfamethazine addition greatly increased the diversity and abundance of mobile genetic elements (MGEs) and antibiotic resistance genes (ARGs). Based on the metagenomic analysis, the horizontal transfer of ARGs in the anammox system was upregulated through bacterial oxidative stress, pili synthesis and type IV secretion system. In addition, two strains of sulfamethazine-resistant bacteria (Pseudomonas asiatica sp. nov. and Pseudomonas shirazica sp. nov.) were isolated from the anammox system. Their whole genome sequencing results showed that the most abundant plasmid was pkF7158B, which mediated the horizontal transfer of two main multidrug resistance genes (cpxR and mexB). This work provides a holistic insight into microbial heterogeneity of different-sized anammox granular sludge and their evolution and resistance development mechanism.

Achieving high nitrogen removal rates in partial nitritation/anammox system treating low-ammonium wastewater by optimizing microbial growth environments via sludge settling-driven spatial segregation

Achieving a high nitrogen removal rate (NRR) in partial nitritation/anammox (PN/A) systems under low-ammonium conditions remains challenging due to conflicting oxygen requirements and substrate competition among functional microbes. To overcome these limitations, a novel spatial segregation strategy driven by sludge settling was proposed to establish niche separation between ammonia-oxidizing bacteria (AOB) and anaerobic ammonia-oxidation bacteria (AnAOB) within a sequencing batch reactor (SBR). AOB-rich flocs were maintained in the aerobic upper zone, while AnAOB-enriched granules settled in the anoxic bottom zone, and an internal reflux ensured efficient nitrite transfer. The NRR was exceeded 430 mg-N·L-1·d-1 with influent NH4+-N concentration of 46.5 ± 3.0 mg·L-1, accompanied by enhanced AOB activity to 0.28 g-N·g-SS-1·d-1, and AnAOB activity was 0.33 g-N·g-SS-1·d-1. Functional gene analysis revealed significant up-regulation of amoA, hao, hzs, and hdh, confirming enhanced PN/A activity. Meanwhile, nitrite-oxidizing bacteria (NOB) were effectively inhibited, with consistent activity levels below 0.01 g-N·g-SS-1·d-1 and abundance decreased to 0.27 %. Spatial in-situ cycling tests showed that more than 97 % of nitrite was utilized by AnAOB, verifying the effectiveness of functional microbial zoning. This strategy provides a scalable and energy-efficient approach to mainstream nitrogen removal in municipal wastewater treatment, and provides a scientific basis and guidance for further applications.

Maximizing the efficiency of single-stage partial nitrification/Anammox granule processes and balancing microbial competition using insights of a numerical model study

Granulation is an efficient approach for the rapid growth of anaerobic ammonia oxidation (Anammox) bacteria (X ANA $$ {X}_{ANA} $$ ) to limit the growth of nitrite-oxidizing bacteria (X NOB $$ {X}_{NOB} $$ ). However, the high sensitivity of Anammox bacteria to operational conditions and the competition with other microorganisms lead to a critical challenge in maintaining sufficientX ANA $$ {X}_{ANA} $$ population. In this study, a one-dimensional steady-state model was developed and calibrated to investigate the kinetic constants ofX ANA $$ {X}_{ANA} $$ growth and mass transport in individual granules, including the liquid film. According to the model calibration results, the range of the maximum specific growth rate constant ofX ANA $$ {X}_{ANA} $$ (μ ANA $$ {\mu}_{ANA} $$ ) was 0.033 to 0.10 d-1. In addition the other kinetic constants ofX ANA $$ {X}_{ANA} $$ were 0.003 d-1 for decay rate constant (b ANA $$ {b}_{ANA} $$ ), 0.10 mg-O2/L for oxygen half-saturation constant (K O 2 ANA $$ {K}_{O_2}^{ANA} $$ ), 0.07 mg-N/L for ammonia half-saturation constant (K NH 4 ANA $$ {K}_{NH_4}^{ANA} $$ ), and 0.05 mg-N/L for nitrite half-saturation constant (K NO 2 ANA $$ {K}_{NO_2}^{ANA} $$ ). The model simulation results showed that the dissolved oxygen of about 0.10 mg-O2/L was found to be optimal to maintain highX ANA $$ {X}_{ANA} $$ population. In addition, minimal COD concentration is required to control heterotrophs (X H $$ {X}_H $$ ) and improve ammonia oxidation by ammonia-oxidizing bacteria (X AOB $$ {X}_{AOB} $$ ). It was also emphasized that moderate mixing conditions (L f $$ {L}_f $$ ≅ $$ \cong $$ 100 μm) are preferable to decrease the diffusion of oxygen to the deep layers of the granules, controlling the competition betweenX ANA $$ {X}_{ANA} $$ andX NOB $$ {X}_{NOB} $$ . A single-factor relative sensitivity analysis (RSA) on microbial kinetics revealed thatμ ANA $$ {\mu}_{ANA} $$ is the governing factor in the efficient operation of the single-stage PN/A processes. In addition, it was found that nitrite concentration is a rate-limiting parameter on the success of the process due to the competition betweenX ANA $$ {X}_{ANA} $$ andX NOB $$ {X}_{NOB} $$ . These findings can be used to enhance our understanding on the importance of microbial competition and mass transport in the single-stage PN/A process. PRACTITIONER POINTS: A one-dimensional steady-state model was developed and calibrated for simulating the single-stage partial nitrification/Anammox (PN/A) granule process. Moderate liquid films (L f $$ {L}_f $$ ≅ $$ \cong $$ 100 μm) are preferable for better performance of Anammox growth in single-stage PN/A processes. Moderate dissolved oxygen (DO≅ $$ \cong $$ 0.10 mg-O2/L) is highly recommended for efficient growth of Anammox bacteria in single-stage PN/A granulation. Minimal COD (COD≅ $$ \cong $$ 0) is preferable for successful operation of the single-stage PN/A granule process. Nitrite concentration is a rate-limiting parameter on the competition between Anammox and nitrite-oxidizing bacteria in the single-stage PN/A processes.

Multi-faceted effects and mechanisms of granular activated carbon to enhance anaerobic ammonium oxidation (anammox) for nitrogen removal from wastewater

Nitrogen removal via anammox is efficient but challenged by their slow growth. Adding granular activated carbon (GAC) increased the total nitrogen removal rate to 66.99 g-N/m3/day, compared to 50.00 g-N/m3/day in non-GAC reactor. Both reactors dominated by Candidatus Brocadia (non-GAC: 36.25 %, GAC: 35.5 %) but GAC improved specific anammox activity. Functional metabolic profiling from metagenomic analysis unveiled that GAC enhanced pathways associated with electron shuttle production, potentially promoting intra/extracellular electron transfer. In nitrogen metabolism, GAC is indicated to facilitate anammox N2H4 synthesis process, and inhibit nitrification and full denitrification processes, functioned by Nitrosomonas and Castellaniella which are more abundant in the non-GAC reactor. GAC also enhanced dissimilatory nitrate reduction to ammonium and partial denitrification processes, providing anammox with NH4+/NO, which was conducted by Anaerolineae members (29.7 % in GAC-reactor and 7.8 % in non-GAC reactor sludge). This research illuminated the intricate microbial nitrogen cycling networks affected by GAC in anammox systems.

Microbial community dynamics in different floc size aggregates during nitrogen removal process upgrading in a full-scale landfill leachate treatment plant

Upgrading processes to reduce biodegradable organic substance addition is crucial for treating landfill leachate with high pollutant concentrations, aiding carbon emission reduction. Aggregate size in activated sludge processes impacts pollutant removal and sludge/water separation. This study investigated microbial community succession and driving mechanisms in different floc-size aggregates during nitrogen removal progress upgrade from conventional to partial nitrification-denitrification in a full-scale landfill leachate treatment plant (LLTP) using 16S rRNA gene sequencing. The upgrade and floc sizes significantly influenced microbial diversity and composition. After upgrading, ammonia-oxidizing bacteria were enriched while nitrite-oxidizing bacteria suppressed in small flocs with homogeneity and high mass transfer efficiency. Larger flocs enriched Defluviicoccus, Thauera, and Truepera, while smaller flocs enriched Nitrosomonas, suggesting their potential as biomarkers. Multi-network analyses revealed microbial interactions. A deep learning model with convolutional neural networks predicted nitrogen removal efficiency. These findings guide optimizing LLTP processes and understanding microbial community dynamics based on floc size.

Microbial response to the chronic toxicity effect of graphene and graphene oxide nanomaterials within aerobic granular sludge systems

Nanomaterials present in wastewater can pose a significant threat to aerobic granular sludge (AGS) systems. Herein, we found that compared to graphene nanomaterials (G-NMs), the long-term presence (95 days) of graphene oxide nanomaterials (GO-NMs) resulted in an increased proliferation of filamentous bacteria, poorer sedimentation performance (SVI30 of 74.1 mL/g) and smaller average particle size (1224.4 µm) of the AGS. In particular, the GO-NMs posed a more significant inhibitory effect to the total nitrogen removal efficiency of AGS (decreased by 14.3 %), especially for the denitrification process. The substantial accumulation of GO-NMs within the sludge matrix resulted in a higher level of reactive oxygen species in AGS compared to G-NMs, thereby inducing lactate dehydrogenase release, and enhancing superoxide oxidase and catalase activities. Such excessive oxidative stress could potentially result in a significant reduction in the activity of nitrogen metabolism enzymes (e.g., nitrate reductase and nitrite reductase) and the expression of key functional genes (e.g., nirS and nirK). Altogether, compared to G-NMs, prolonged exposure to GO-NMs had a more significant chronic toxicity effect on AGS systems. These findings implied that the presence of G-NMs and GO-NMs is a hidden danger to biological nitrogen removal and should receive more attention.

Unifying concepts in methanogenic, aerobic, and anammox sludge granulation

The retention of dense and well-functioning microbial biomass is crucial for effective pollutant removal in several biological wastewater treatment technologies. High solids retention is often achieved through aggregation of microbial communities into dense, spherical aggregates known as granules, which were initially discovered in the 1980s. These granules have since been widely applied in upflow anaerobic digesters for waste-to-energy conversions. Furthermore, granular biomass has been applied in aerobic wastewater treatment and anaerobic ammonium oxidation (anammox) technologies. The mechanisms underpinning the formation of methanogenic, aerobic, and anammox granules are the subject of ongoing research. Although each granule type has been extensively studied in isolation, there has been a lack of comparative studies among these granulation processes. It is likely that there are some unifying concepts that are shared by all three sludge types. Identifying these unifying concepts could allow a unified theory of granulation to be formed. Here, we review the granulation mechanisms of methanogenic, aerobic, and anammox granular sludge, highlighting several common concepts, such as the role of extracellular polymeric substances, cations, and operational parameters like upflow velocity and shear force. We have then identified some unique features of each granule type, such as different internal structures, microbial compositions, and quorum sensing systems. Finally, we propose that future research should prioritize aspects of microbial ecology, such as community assembly or interspecies interactions in individual granules during their formation and growth.

Nitrous oxide emissions in novel wastewater treatment processes: A comprehensive review

The proliferation of novel wastewater treatment processes has marked recent years, becoming particularly pertinent in light of the strive for carbon neutrality. One area of growing attention within this context is nitrous oxide (N2O) production and emission. This review provides a comprehensive overview of recent research progress on N2O emissions associated with novel wastewater treatment processes, including Anammox, Partial Nitrification, Partial Denitrification, Comammox, Denitrifying Phosphorus Removal, Sulfur-driven Autotrophic Denitrification and n-DAMO. The advantages and challenges of these processes are thoroughly examined, and various mitigation strategies are proposed. An interesting angle that delve into is the potential of endogenous denitrification to act as an N2O sink. Furthermore, the review discusses the potential applications and rationale for novel Anammox-based processes to reduce N2O emissions. The aim is to inform future technology research in this area. Overall, this review aims to shed light on these emerging technologies while encouraging further research and development.

Robustness and stability of acetate-driven partial denitrification (PD) in response to high COD/NO3--N

Partial Denitrification (PD) producing nitrite for anammox may face the issue of relatively high chemical oxygen demand (COD) loading (i.e., COD/NO₃^--N) due to real wastewater being changed in substrate concentration and flowrate. In this study, three PD systems (R1, R2, R3) with sodium acetate providing electrons were developed to investigate the influence of the relatively high COD/NO₃^--N ratios (4.0, 6.0, and 8.0) on NO₂^--N production and the subsequent recoverability. It was found that a relatively high NO₂^--N production with nitrate-to-nitrite transformation ratio (NTR) of 74.0% could be still obtained despite COD/NO₃^--N even improving to 8.0 under limited reaction time (10 min) with small nitrate remaining. However, a deteriorated nitrite production was observed with sufficient reaction time (15 min) with NTR being lowered to 19.2%. Delightedly, when reducing influent COD/NO₃^--N to a normal level of 3.0, PD with high nitrite production was rapidly achieved after suffering from a relatively high COD/NO₃^--N (4.0-8.0) for 130 cycles. Besides, it was found the relatively high COD/NO₃^--N had a minor influence on the recoverability of PD, as evidenced by the close NTRs. Microbial analysis revealed the relative abundance of PD functional bacteria, Thauera, decreased under high COD/NO₃^--N, while it is still highly dominated in the systems, varying from 75.1% in R1 to 62.8% in R3 after around 110-cycles recovery. Furthermore, it appeared that the high pH (9.1-9.2) induced by sodium acetate also likely played a role in maintaining the excellent PD. Overall, this study demonstrated the robustness and stability of acetate-driven PD in response to high COD/NO₃^--N, further informing the technological superiority of PD in supplying stable and efficient nitrite, which provided solid technical support to apply it with anammox for high-efficient N removal.

Rapid proliferation of anaerobic ammonium oxidizing bacteria using anammox-hydroxyapatite technology in a pilot-scale expanded granular sludge bed reactor

The practical application of anaerobic ammonium oxidation (anammox) technology was seriously limited by lack of anammox seeding sludge. In this work, a pilot-scale expanded granular sludge bed (EGSB) reactor was used for rapid proliferation of anaerobic ammonium oxidizing bacteria (AnAOB) using anammox-hydroxyapatite (anammox-HAP) technology. The excellent settleability of anammox-HAP granular sludge (with an excellent settling velocity of 395 m/h) supported the up-flow velocity of 9.6 m/h with recirculation ratio of 19. A high nitrogen loading rate (NLR) of 26.4 g N/L/d was achieved in the pilot-scale reactor, with a cell yield of 0.23 g VSS/g NH₄⁺-N. The high recirculation ratio and up-flow velocity brought about the efficient mass transfer for anammox, eliminating free ammonia inhibition, resulting in the high NLR and cell yield. Results of microbial community revealed that the relative abundance of unclassified Brocadiaceae increased from 18.55% to 82.80%, illustrating the rapid proliferation of AnAOB.

Multiscale modelling of the start-up process of anammox-based granular reactors

This work proposes a mathematical model on partial nitritation/anammox (PN/A) granular bioreactors, with a particular interest in the start-up phase. The formation and growth of granular biofilms is modelled by a spherical free boundary problem with radial symmetry and vanishing initial value. Hyperbolic PDEs describe the advective transport and growth of sessile species inhabiting the granules. Parabolic PDEs describe the diffusive transport and conversion of soluble substrates, and the invasion process mediated by planktonic species. Attachment and detachment phenomena are modelled as continuous and deterministic fluxes at the biofilm-bulk liquid interface. The dynamics of planktonic species and substrates within the bulk liquid are modelled through ODEs. A simulation study is performed to describe the start-up process of PN/A granular systems and the development of anammox granules. The aim is to investigate the role that the invasion process of anaerobic ammonia-oxidizing (anammox) bacteria plays in the formation of anammox granules and explore how it affects the microbial species distribution of anaerobic ammonia-oxidizing, aerobic ammonia-oxidizing, nitrite-oxidizing and heterotrophic bacteria. Moreover, the model is used to study the role of two key parameters in the start-up process: the anammox inoculum size and the inoculum addition time. Numerical results confirm that the model can be used to simulate the start-up process of PN/A granular systems and to predict the evolution of anammox granular biofilms, including the ecology and the microbial composition. In conclusion, after being calibrated, the proposed model could provide quantitatively reliable results and support the start-up procedures of full-scale PN/A granular reactors.

Metagenomic Insights Into Competition Between Denitrification and Dissimilatory Nitrate Reduction to Ammonia Within One-Stage and Two-Stage Partial-Nitritation Anammox Bioreactor Configurations

Anaerobic ammonia oxidizing bacteria (Anammox) are implemented in high-efficiency wastewater treatment systems operated in two general configurations; one-stage systems combine aerobic ammonia oxidizing bacteria (AOB) and Anammox within a single aerated reactor, whereas two-stage configurations separate these processes into discrete tanks. Within both configurations heterotrophic populations that perform denitrification or dissimilatory nitrate reduction to ammonia (DNRA) compete for carbon and nitrate or nitrite and can impact reactor performance because DNRA retains nitrogen in the system. Therefore, it is important to understand how selective pressures imposed by one-stage and two-stage reactor configurations impact the microbial community structure and associated nitrogen transforming functions. We performed 16S rRNA gene and metagenomic sequencing on different biomass fractions (granules, flocs, and suspended biomass) sampled from two facilities treating sludge dewatering centrate: a one-stage treatment facility (Chambers Creek, Tacoma, WA) and a two-stage system (Rotterdam, Netherlands). Similar microbial populations were identified across the different samples, but relative abundances differed between reactor configurations and biomass sources. Analysis of metagenome assembled genomes (MAGs) indicated different lifestyles for abundant heterotrophic populations. Acidobacteria, Bacteroidetes, and Chloroflexi MAGs had varying capacity for DNRA and denitrification. Acidobacteria MAGs possessed high numbers of glycosyl hydrolases and glycosyl transferases indicating a role in biomass degradation. Ignavibacteria and Phycosphaerae MAGs contributed to the greater relative abundance of DNRA associated nrf genes in the two-stage granules and contained genomic features suggesting a preference for an anoxic or microoxic niche. In the one-stage granules a MAG assigned to Burkholderiales accounted for much of the abundant denitrification genes and had genomic features, including the potential for autotrophic denitrification using reduced sulfur, that indicate an ability to adapt its physiology to varying redox conditions. Overall, the competition for carbon substrates between denitrifying and DNRA performing heterotrophs may be impacted by configuration specific selective pressures. In one-stage systems oxygen availability in the bulk liquid and the oxygen gradient within granules would provide a greater niche space for heterotrophic populations capable of utilizing both oxygen and nitrate or nitrite as terminal electron acceptors, compared to two-stage systems where a homogeneous anoxic environment would favor heterotrophic populations primarily adapted to anaerobic metabolism.

Microbial community and performance of a partial nitritation/anammox sequencing batch reactor treating textile wastewater

Implementation of onsite bioremediation technologies is essential for textile industries due to rising concerns in terms of water resources and quality. Partial nitritation-anaerobic ammonium oxidation (PN/A) processes emerged as a valid, but unexplored, solution. In this study, the performance of a PN/A pilot-scale (9 m3) sequencing batch reactor treating digital textile printing wastewater (10-40 m3 d-1) was monitored by computing nitrogen (N) removal rate and efficiencies. Moreover, the structure of the bacterial community was assessed by next generation sequencing and quantitative polymerase chain reaction (qPCR) analyses of several genes, which are involved in the N cycle. Although anaerobic ammonium oxidation activity was inhibited and denitrification occurred, N removal rate increased from 16 to 61 mg N g VSS-1 d-1 reaching satisfactory removal efficiency (up to 70%). Ammonium (18-70 mg L-1) and nitrite (16-82 mg L-1) were detected in the effluent demonstrating an unbalance between the aerobic and anaerobic ammonia oxidation activity, while constant organic N was attributed to recalcitrant azo dyes. Ratio between nitrification and anammox genes remained stable reflecting a constant ammonia oxidation activity. A prevalence of ammonium oxidizing bacteria and denitrifiers suggested the presence of alternative pathways. PN/A resulted a promising cost-effective alternative for textile wastewater N treatment as shown by the technical-economic assessment. However, operational conditions and design need further tailoring to promote the activity of the anammox bacteria.

Using anammox biofilms for rapid start-up of partial nitritation-anammox in integrated fixed-film activated sludge for autotrophic nitrogen removal

Integrated fixed-film activated sludge (IFAS) reactors are suitable for partial nitritation-anammox (PNA) for autotrophic nitrogen removal; however, its start-up and biofilm formation are slow and difficult. In this study, a new sludge seeding strategy was developed for the start-up of PNA-IFAS by using the pre-cultivated anammox biofilms. Two bioreactors were used in the experimental study, including a reactor that was started conventionally with the pre-acclimated suspended PNA sludge and bare biocarriers (PA-S) and a reactor that used the new seeding method with anammox biofilms pre-acclimated on biocarriers and ammonia-oxidizing bacteria (AOB) sludge in the suspension (PA-B). The use of anammox biofilms as the seed biomass greatly shortened the start-up period of the PNA-IFAS reactor to 1 month or so. Moreover, reactor PA-B achieved a higher nitrogen removal rate (707.3 mg N/(L·d)), better nitrogen removal efficiency (86.8 ± 2.8%), and lower nitrate yield (9.4%) than reactor PA-S. The biofilm development in PA-B was accelerated and its biofilm content was nearly 10 times higher than that of PA-S. The initial segregation of anammox in the biofilm and AOB in the suspended sludge provided an environment that not only accelerated the start-up of PNA-IFAS but also helped suppress the enrichment of unwanted nitrite-oxidizing bacteria (NOB) in the bioreactor, as evidenced by the lower NOB abundance in PA-B (<0.5%) than in PA-S (>2.2%) according to microbial community analysis.

Disproportionate responses between free-living and particle-attached bacteria during the transition to oxygen-deficient zones in the Bohai Seawater

The Bohai Sea has recently suffered several seasonal oxygen-deficiency, even hypoxia events during the summer. To better understand effects of dissolved oxygen (DO) concentration on the bacterial composition in particle attached (PA) and free living (FL) fractions during the transition from oxic water to low oxygen conditions, the bacterial communities under three different oxygen levels, i.e., high oxygen (HO, close to 100% O₂ saturation), medium oxygen (MO, close to 75% O₂ saturation), and low oxygen (LO, close to 50% O₂ saturation) in the Bohai Sea were investigated using 16S rRNA amplicon sequencing. Fourteen water samples from 5 stations were collected during a cruise from August to September in 2018. The results showed that the sequences of Proteobacteria and Actinobacteriota jointly accounted for up to 74% across all 14 samples. The Shannon index in HO samples were significantly higher than in LO samples (P < 0.05), especially in PA communities. The composition of bacterial communities varied by oxygen concentration in all samples, and the effect was more pronounced in the PA fraction, which indicates that the PA fraction was more sensitive to the change in oxygen concentration, possibly due to the tighter interactions in this community than in the FL fraction. This study provides novel insights into the distribution of bacterial communities, and clues for understanding the responses of bacterial communities in the Bohai Sea during the transition from the oxic to oxygen-deficient zones.

Distinct growth stages controlled by the interplay of deterministic and stochastic processes in functional anammox biofilms

Mainstream anaerobic ammonium oxidation (anammox) represents one of the most promising energy-efficient mechanisms of fixed nitrogen elimination from wastewaters. However, little is known about the exact processes and drivers of microbial community assembly within the complex microbial biofilms that support anammox in engineered ecosystems. Here, we followed anammox biofilm development on fresh carriers in an established 8m³ mainstream anammox reactor that is exposed to seasonal temperature changes (~25-12°C) and varying NH₄⁺ concentrations (5-25 mg/L). We use fluorescence in situ hybridization and 16S rRNA gene sequencing to show that three distinct stages of biofilm development emerge naturally from microbial community composition and biofilm structure. Neutral modelling and network analysis are employed to elucidate the relative importance of stochastic versus deterministic processes and synergistic and antagonistic interactions in the biofilms during their development. We find that the different phases are characterized by a dynamic succession and an interplay of both stochastic and deterministic processes. The observed growth stages (Colonization, Succession and Maturation) appear to be the prerequisite for the anticipated growth of anammox bacteria and for reaching a biofilm community structure that supports the desired metabolic and functional capacities observed for biofilm carriers already present in the system (~100g_NH4-N m³ d^-1). We discuss the relevance of this improved understanding of anammox-community ecology and biofilm development in the context of its practical application in the start-up, configuration, and optimization of anammox biofilm reactors.

Insights into two stable mainstream deammonification process and different microbial community dynamics at ambient temperature

How to achieve stable mainstream deammonification is still a huge challenge. In this work, satisfactory nitrogen removal were achieved in a deammonification granular sludge reactor (R1, 0.42 ± 0.03 kg N / (m³·d)) and a mixed flocculent with granular sludge reactor (R2, 0.39 ± 0.04 kg N / (m³·d)) at ambient temperature (21-28 ℃) . The good adaptability of anammox bacteria (Candidatus Jettenia) to ambient temperature ensured its efficient activity (0.84-1.54 mg N/(g VSS·h)). The overexpression ammonia monooxygenase gene abundances in ammonia oxidizing bacteria (Nitrosomonas) was also predicted. The inhibition of hydrazine and the competition of denitrifying bacteria (Denitratisoma) to nitrite nitrogen, leading to a low Nitrospira relative abundances (0.2%-2.1%) . It was also found that R1 was more resistant to the unfavorable condition. For R2, higher Denitratisoma abundances (9.2%-18.5%) and predicted metabolic pathway abundances related to carbon metabolism were observed.

Research progress on enhancing the performance of autotrophic nitrogen removal systems using microbial immobilization technology

The autotrophic nitrogen removal process has great potential to be applied to the biological removal of nitrogen from wastewater, but its application is hindered by its unstable operation under adverse environmental conditions, such as those presented by low temperatures, high organic matter concentrations, or the presence of toxic substances. Granules and microbial entrapment technology can effectively retain and enrich microbial assemblages in reactors to improve operating efficiency and reactor stability. The carriers can also protect the reactor's internal microorganisms from interference from the external environment. This article critically reviews the existing literature on autotrophic nitrogen removal systems using immobilization technology. We focus our discussion on the natural aggregation process (granulation) and entrapment technology. The selection of carrier materials and entrapment methods are identified and described in detail and the mechanisms through which entrapment technology protects microorganisms are analyzed. This review will provide a better understanding of the mechanisms through which immobilization operates and the prospects for immobilization technology to be applied in autotrophic nitrogen removal systems.

Redox stratification within cryoconite granules influences the nitrogen cycle on glaciers

Cryoconite granules are naturally occurring microbial structures on glacier surfaces worldwide. They play a key role in carbon and nitrogen cycling in glacier ecosystems and can accelerate the melting of snow and ice. However, detailed mechanism of nitrogen cycling in cryoconite granules remains unclear. Here, we demonstrate that redox stratification affects the spatial distribution of N cycling processes in cryoconite granules. Based on microsensor measurements for O2, NH4+, NO2- and NO3-, we identified the presence of fine-scale redox stratification within cryoconite granules. Cyanobacteria at the surface layer of the granules created oxic conditions, whereas the inner core of the granules was anoxic. Metatranscriptomic analyses indicated the active occurrences of nitrification in the inner core, whereas denitrification actively occurred both in the inner core and the surface layer of the granules. Cyanobacteria in the inner core of the granules were inactive, and likely dead and being degraded, providing carbon and nitrogen to support nitrifiers and denitrifiers. Quantities of nitrification genes/transcripts were greater in large cryoconite granules than small ones, most likely because nitrogen substrates were more abundantly present in the inner core of large granules due to distinct redox stratification. Our results suggest that the development of a granular structure of cryoconite granules can largely affect carbon and nitrogen cycling on glaciers.

Larger Anammox Granules not only Harbor Higher Species Diversity but also Support More Functional Diversity

Granule-based partial nitritation and anammox (PN/A) represents one of the most energy-efficient biotechniques for ammonium removal from wastewater. The PN/A granules appear in a continuum of sizes, yet little is known about the extent to which microbial communities and microbial metabolisms are partitioned between size-fractionated granules. Here, we divided granules harvested from a pilot-scale PN/A reactor into five discrete size fractions (<0.2, 0.2-0.5, 0.5-0.8, 0.8-1.0, and >1.0 mm). The composition and functional attribute of five pools of the size-fractionated granules were characterized by 16S ribosomal RNA (rRNA) gene amplicon and metagenomic and metatranscriptomic sequencing to provide a comprehensive insight into the key microbial group in a PN/A system. Larger granules were shown to not only harbor higher microbial diversity but also support more diverse functions than smaller granules. De novo coassembly and binning of metagenomic reads yielded 22 draft genomes of dominant microorganisms, which allowed us to infer an ecological model of the microbial ecosystem in anammox-based granules. This genome-based ecological model indicates that nitrifying organisms in smaller granules feed nitrite to anammox bacteria in larger granules. The results improve our understanding of the PN/A system, especially for the metabolic interactions between small and large granules.

Effect of Aeration Mode on Microbial Structure and Efficiency of Treatment of TSS-Rich Wastewater from Meat Processing

The present study investigated the effect of aeration mode on microbial structure and efficiency of treatment of wastewater with a high concentration of suspended solids (TSS) from meat processing in sequencing batch reactors (R). R1 was constantly aerated, while in R2 intermittent aeration was applied. DNA was isolated from biomass and analyzed using next-generation sequencing (NGS) and real-time PCR. As a result, in R1 aerobic granular sludge was cultivated (SVI30 = 44 mL g−1 MLSS), while in R2 a very well-settling mixture of aerobic granules and activated sludge was obtained (SVI30 = 65 mL g−1 MLSS). Intermittent aeration significantly increased denitrification and phosphorus removal efficiencies (68% vs. 43%, 73% vs. 65%, respectively) but resulted in decomposition of extracellular polymeric substances and worse-settling properties of biomass. In both reactors, microbial structure significantly changed in time; an increase in relative abundances of Arenimonas sp., Rhodobacterace, Thauera sp., and Dokdonella sp. characterized the biomass of stable treatment of meat-processing wastewater. Constant aeration in R1 cycle favored growth of glycogen-accumulating Amaricoccus tamworthensis (10.9%) and resulted in 2.4 times and 1.4 times greater number of ammonia-oxidizing bacteria and full-denitrifiers genes in biomass, respectively, compared to the R2.

Optimization of nitrogen and carbon removal with simultaneous partial nitrification, anammox and denitrification in membrane bioreactor

In this study, a membrane bioreactor (MBR) was used to achieve both nitrogen and carbon removal by a simultaneous partial nitrification, anammox and denitrification (SNAD) process. During the entire experiment, the intermittent aeration (non-aerobic time : aeration time, min min^-1) cycle was controlled by a time-controlled switch, and the aeration rate was controlled by a gas flowmeter, and the optimal operating parameters as determined by response surface methodology (RSM) were a C/N value of 1.16, a DO value of 0.84 mg l^-1 and an aerobic time (T _ae) of 15.75 min. Under these conditions, the SNAD process achieved efficient and stable nitrogen and carbon removal; the total inorganic nitrogen removal efficiency and chemical oxygen demand removal efficiency were 92.31% and 95.67%, respectively. With the formation of granular sludge, the membrane fouling rate decreased significantly from 35.0 Pa h^-1 at SNAD start-up to 19.9 Pa h^-1 during stable operation. Fluorescence in situ hybrid analyses confirmed the structural characteristics and the relative ratio of aerobic ammonia-oxidizing bacteria, anaerobic ammonia-oxidizing bacteria and denitrifying bacteria in the SNAD system.

Newly designed high-coverage degenerate primers for nitrogen removal mechanism analysis in a partial nitrification-anammox (PN/A) process

Reliable tools for quantification of different functional populations are required to achieve stable, effective nutrients removal in partial nitrification and anammox (PN/A) processes. Here we report the design and validation of degenerate PCR primer pairs targeting anammox bacteria, aerobic ammonium-oxidizing bacteria (AeAOB) and nitrite-oxidizing bacteria (NOB) with high coverage but without sacrificing specificity. The new primer pairs are able to cover a broader range of the targeted populations (58.4 vs 21.7%, 49.5 vs 47.6%, 80.7 vs 57.2% and 70.5 vs 42.3% of anammox bacteria, AeAOB, Nitrobacter and Nitrospina, respectively) than previously published primers. Particularly, the Amx719F/875R primer can retrieve a larger number of 16S rRNA genes from different types of samples with amplicons covering all known anammox bacteria genera (100% coverage) including the recently found novel genus, Asahi BRW. These newly desinged primers will provide a more reliable molecular tool to investigate the mechanisms of nitrogen removal in PN/A processes, which can provide clearer links between reactor performance, the metabolic activities and abundances of functional populations, shedding light on conditions that are favorable to the establishment of stable PN/A.

Aggregate size-dependence of bacterial community separation in a full-scale membrane bioreactor plant

The size of bacterial aggregates can determine both nutrient removal and sludge/water separation in activated sludge processes. In this study, the bacterial community structures and network associations of different sized aggregates obtained from a full-scale membrane bioreactor plant over a one-year period were investigated. Our results showed that biodiversity of larger sized aggregates was significantly higher than that of smaller ones and that the bacterial compositions of different sized aggregates differed significantly from each other. Bacteria related to nutrient removal (e.g. denitrification, hydrolysis and fermentation) were found to be significantly more abundant in larger aggregates than smaller ones. Network analysis revealed significant difference in species-species interactions, topological roles of individual OTU and keystone populations among different sized aggregates. Moreover, the occurrence of keystone OTUs affiliated with denitrifiers (Thermomonas) in networks of large and medium aggregates may suggest that denitrification influences bacterial interactions in large and medium aggregates. Overall, our results indicate the aggregates size-dependence of bacterial community separation in activated sludge. The current findings not only can provide guidance for process design and operation optimization, but also highlight the necessity for paying more attentions to the aggregate-based community, metabolic function and gene expression of activated sludge in future studies.

Model-based investigation of membrane biofilm reactors coupling anammox with nitrite/nitrate-dependent anaerobic methane oxidation

An innovative process coupling anaerobic ammonium oxidation (anammox) with nitrite/nitrate-dependent anaerobic methane oxidation (n-DAMO) in membrane biofilm reactors (MBfRs) has been developed to achieve high-level nitrogen removal from both sidestream (i.e., anaerobic digestion liquor) and mainstream (i.e., domestic strength) wastewater. In this study, a 1D biofilm model embedding the n-DAMO and anammox reactions was developed to facilitate further understanding of the process and its optimization. The model was calibrated and validated using comprehensive data sets from two independent MBfRs, treating sidestream- and mainstream-strength wastewater, respectively. Modelling results revealed a unique biofilm stratification. While anammox bacteria dominated throughout the biofilm, n-DAMO archaea (coupling nitrate reduction with anaerobic methane oxidation) only occurred at the inner layer and n-DAMO bacteria (coupling nitrite reduction with anaerobic methane oxidation) spread more evenly with a slightly higher fraction in the outer layer. The established MBfRs were robust against dynamic influent flowrates and nitrite/ammonium ratios. Thicker biofilms were beneficial for not only the total nitrogen (TN) removal but also the system robustness. Additionally, a positive correlation between the nitrogen removal efficiency and the residual methane emission was observed, as a result of higher methane partial pressure required. However, there was a threshold of methane partial pressure, above which the residual methane increased but nitrogen removal efficiency was stable. Meanwhile, thicker biofilms were also favorable to achieve less residual methane emission. Simulation results also suggested the feasibility of methane-based MBfRs to polish mainstream anammox effluent to meet a stringent N discharge standard (e.g., TN < 5 mg/L).

Influence of particle size distribution on anaerobic degradation of phenol and analysis of methanogenic microbial community

Sludge morphology considerably affects the mechanism underlying microbial anaerobic degradation of phenol. Here, we assessed the phenol degradation rate, specific methanogenic activity, electron transport activity, coenzyme F₄₂₀ concentration, and microbial community structure of five phenol-degrading sludge of varying particle sizes (i.e., < 20, 20-50, 50-100, 100-200, and > 200 μm). The results indicated an increase in phenol degradation rate and microbial community structure that distinctly correlated with an increase in sludge particle size. Although the sludge with the smallest particle size (< 20 μm) showed the lowest phenol degradation rate (9.3 mg COD·gVSS^-1 day^-1), its methanogenic activity with propionic acid, butyric acid, and H₂/CO₂ as substrates was the best, and the concentration of coenzyme F₄₂₀ was the highest. The small particle size sludge did not contain abundant syntrophic bacteria or hydrogenotrophic methanogens, but contained abundant acetoclastic methanogens. Moreover, the floc sizes of the different sludge varied in important phenol-degrading bacteria and archaea, which may dominate the synergistic mechanism. This study provides a new perspective on the role of sludge floc size on the anaerobic digestion of phenol.

Comparing the nitrogen removal performance and microbial communities of flocs-granules hybrid and granule-based CANON systems

Flocs and granules tend to coexist in a single reactor. Granules can improve microbial retention capacity, however, the role of flocs in the CANON reactor remains unclear. The changes in the nitrogen removal performance and microbial communities between flocs-granules hybrid and granule-based systems were studied in this experiment. With a reduction in the flocs ratio (35% → 10%), the nitrogen removal performance deteriorated. The average nitrogen removal efficiency and rate dropped from 81.4% to 67.2% and from 0.225 to 0.174 kg/(m³·d), respectively. The contribution of heterotrophic denitrifying bacteria decreased from 13.5% to 1%, leading to changes in the nitrogen removal pathways between the systems. Furthermore, the activities of anaerobic and aerobic ammonium oxidizing bacteria declined dramatically, which weakened the nitrogen removal performance. Thus, the hybrid system with a flocs ratio near 35% is recommended for use in a CANON reactor.

Achieving stable and efficient single-stage deammonification using plug flow reactor

The deammonification process is a promising technology, while achieving stable performance is still a challenge for domestic sewage treatment. To investigate the stability of deammonification in the plug flow system, which can be updated from A/O or A/A/O bioreactor, a plug flow fixed biofilm reactor was started-up and fed with synthetic low-strength wastewater. As a result, average ammonium removal efficiency of 90.0 ± 10.0% and total nitrogen removal efficiency of 79.4 ± 9.3% were achieved, while the nitrate production ratio (∆Nitrate/∆Ammonium) was at superior levels (9.5 ± 3.4%). Candidatus Jettenia and Candidatus Brocadia were the anammox bacteria in this reactor, and Candidatus Jettenia was the predominant anammox bacteria. Anammox bacteria were dominated in three of the four sampling points except the first one. Relative abundance of NOB increased along the reactor. The result of the present work implied that the plug flow system was able to maintain stable deammonification process, and NOB was suppressed by higher residual ammonium concentration in the front of reactor while the suppression weakened along the reactor.

Effects of key enzyme activities and microbial communities in a flocculent-granular hybrid complete autotrophic nitrogen removal over nitrite reactor under mainstream conditions

Recently, a flocculent-granular hybrid reactor was reported as a novel nitrogen removal system; however, the mechanisms of stable operation in the system remain unclear. In this study, the mechanisms of the stable nitrogen removal performance in a flocculent-granular hybrid system were investigated with temperature reduction. The operational period was divided into three phases with different temperatures ranges. In phase I, the nitrogen removal efficiency was stabilized at about 90% with nitrogen removal load maintained at approximately 0.28 kg N/(m³·day). In phase II, while decreasing the temperature to 20 °C, the activities of key enzymes were reduced immediately and were then maintained at a certain level. The relative abundances of aerobic ammonium-oxidizing bacteria and anaerobic ammonium-oxidizing bacteria gradually increased at this phase. In phase III, after the temperature dropped to 15 °C, the activities of key enzymes gradually increased due to adaptation to low temperature, boosting the nitrogen removal efficiency to 83%.

Anammox granular sludge in low-ammonium sewage treatment: Not bigger size driving better performance

An integrated investigation to document high anammox abundance, activity and diversity in upflow anaerobic sludge blanket (UASB) reactor treating low-strength ammonium loading sewage was performed and showed that the optimal anammox granular sludge sizes could mitigate undesirable N₂O emission. The enhanced anammox bacterial abundance, activity and specific anammox rate were achieved with optimal granules sludge sizes of 0.5-0.9 mm with multiple "Jettenia", "Brocadia", and "Anammoxoglobus" species. The tightly-bound extracellular polymeric substance (TB-EPS) was the main EPS layer found in anammox granular sludge, in which polysaccharides play an important structural role. Over this granular sludge sizes, the anammox bacterial abundance and activity did not significantly decrease, but N₂O emission significantly increased. High throughput sequencing and ecological networks demonstrated the patterns of anammox and their co-occurring bacteria, with availability N₂O-producer and N₂O-reducer functional genes. Incomplete denitrification and insufficient carbon source mainly contributed to N₂O production in granular sludge, as supported by results of stratification analysis.

Evidence of differential adaptation to decreased temperature by anammox bacteria

Low temperature is recognized as one of the major barriers for the application of the anaerobic ammonium oxidation (anammox) process to treat mainstream wastewater. Studies are yet to reveal the underlying biological limitations and molecular mechanisms associated with the inhibition of low temperature on the anammox process. In this study, metaproteomics was used to examine proteome modulation patterns of the anammox community occurring at different temperatures. The anammox community remarkably altered their proteomes when the temperature decreased from 35 °C to 20 °C. This was especially for proteins involved in energy conversion, transcription and translation and inorganic ion transport. However, at 15 °C the anammox activities became distinctly inhibited, and there was evidence of energy limitations and severe stress in Candidatus Kuenenia and to a lesser degree in Candidatus Brocadia. Candidatus Jettenia exhibited more changes in its proteome at 15 °C. From the proteomes, at the lower temperatures there was evidence of stress caused by toxic nitrogen compounds or reactive oxygen species in the anammox bacteria. Hydroxylamine oxidoreductase (HAO)-like proteins and an oxidative stress response protein (a catalase) were in high abundance to potentially ameliorate these inhibitory effects. This study offers metaproteomic insight into the anammox community-based physiological response to decreasing temperatures.

The threshold of influent ammonium concentration for nitrate over-accumulation in a one-stage deammonification system with granular sludge without aeration

Low-strength ammonium is still a challenge for the mainstream deammonification because of nitrate over-accumulation. In this study, the threshold of influent ammonium concentration of one-stage deammonification system with granular sludge was investigated, by stepwise decreasing influent ammonium from high concentrations (280mg/L to 140mg/L) to the low concentration (70mg/L) in 108d at 32°C without aeration. Results showed that, under 70mg/L NH₄⁺-N, ΔNO₃^--N/ΔNH₄⁺-N ratio increased to 0.2, deviated from the theoretical value of 0.11, with ammonium and TN removal efficiencies of 91% and 71%, respectively. However, under both high ammonium concentrations (280mg/L and 140mg/L), nitrate production stabilized at only 13%. Chloroflexi, Planctomycetes and Proteobacteria contributed >70% of the communities under all three ammonium concentrations. As influent ammonium decreasing, the relative abundances of bacteria for anammox, aerobic oxidizing and denitrifying decreased, while NOB (nitrite oxidizing bacteria) abundance increased greatly. So 70mg/L was the threshold of influent ammonium concentration for stable deammonification without organic influent. It was the decrease of functional bacteria and overgrowth of NOB that worsen the deammonification performance under low-strength ammonium.

Microbial community structure and function in aerobic granular sludge

Aerobic granular sludge (AGS), a self-immobilized microbial consortium containing different functional microorganisms, is receiving growing attention, since it has shown great technological and economical potentials in the field of wastewater treatment. Microbial community is crucial for the formation, stability, and pollutant removal efficiency of aerobic granules. This mini-review systematically summarizes the recent findings of the microbial community structure and function of AGS and discusses the new research progress in the microbial community dynamics during the granulation process and spatial distribution patterns of the microbiota in AGS. The presented information may be helpful for the in-depth theoretical study and practical application of AGS technology in the future.

Enhanced effects of maghemite nanoparticles on the flocculent sludge wasted from a high-rate anammox reactor: Performance, microbial community and sludge characteristics

Magnetic nanoparticles (NPs) have been widely applied in environmental remediation, biomass immobilization and wastewater treatment, but their potential impact on anaerobic ammonium oxidation (anammox) biomass remains unknown. In this study, the short-term and long-term impacts of maghemite NPs (MHNPs) on the flocculent sludge wasted from a high-rate anammox reactor were investigated. Batch assays showed that the presence of MHNPs up to 200 mg L^-1 did not affect anammox activity, reactive oxygen species production, or cell membrane integrity. Moreover, long-term addition of 1-200 mg L^-1 MHNPs had no adverse effects on reactor performance. Notably, the specific anammox activity, the abundance of hydrazine synthase structural genes and the content of extracellular polymeric substance were increased with elevated MHNP concentrations. Meanwhile, the community structure was shifted to higher abundance of Candidatus Kuenenia indicated by high-throughput sequencing. Therefore, MHNPs could be applied to enhance anammox flocculent sludge due to their favorable biocompatibility.

Single-stage autotrophic nitrogen removal process at high loading rate: granular reactor performance, kinetics, and microbial characterization

For the possible highest performance of single-stage combined partial nitritation/anammox (PNA) process, a continuous complete-mix granular reactor was operated at progressively higher nitrogen loading rate. The variations in bacterial community structure of granules were also characterized using high-throughput pyrosequencing, to give a detail insight to the relationship between reactor performance and functional organism abundance within completely autotrophic nitrogen removal system. In 172 days of operation, a superior total nitrogen (TN) removal rate over 3.9 kg N/(m³/day) was stable implemented at a fixed dissolved oxygen concentration of 1.9 mg/L, corresponding to the maximum specific substrate utilization rate of 0.36/day for TN based on the related kinetics modeling. Pyrosequencing results revealed that the genus Nitrosomonas responsible for aerobic ammonium oxidation was dominated on the granule surface, which was essential to offer the required niche for the selective enrichment of anammox bacteria (genus Candidatus Kuenenia) in the inner layer. And the present of various heterotrophic organisms with general functions, known as fermentation and denitrification, could not be overlooked. In addition, it was believed that an adequate excess of ammonium in the bulk liquid played a key role in maintaining process stability, by suppressing the growth of nitrite-oxidizing bacteria through dual-substrate competitions.

Mainstream upflow nitritation-anammox system with hybrid anaerobic pretreatment: Long-term performance and microbial community dynamics

Mainstream nitritation-anammox is of strong interest to energy- and resource-efficient domestic wastewater treatment. However, there lack in-depth studies of pretreatment, tests of actual wastewater, and examination of long-term performance. Herein, an upflow nitritation-anammox granular reactor has been investigated to treat primary effluent with a hybrid anaerobic reactor (HAR) as pretreatment for more than 300 days. This system achieved 92% of COD removal, 75% of which was accomplished by the HAR, and had an average final effluent COD concentration of 22 mg L^-1. More than 90% of ammonium was removed in the nitritation-anammox reactor, achieving a nitrogen removal rate of 81.0 g N m^-3 d^-1 in the last stage. The accumulation of sulfate-reducing bacteria in the HAR evidenced the effect of sulfate on COD removal and subsequent nitrogen removal. Anammox bacteria (predominantly Ca. Jettenia asiatica) accounted for up to 40.2% of total granular communities, but their abundance decreased over time in the suspended communities. The dynamics of major metabolisms and functional genes involved in nitrogen conversion were predicted by PICRUSt based on the taxonomic data, providing more insights into the functions of the microbial communities. These results have demonstrated the effectiveness and importance of anaerobic pretreatment to successful mainstream nitritation-anammox.