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For: Huang GS, Keil RL. Requirements for activity of the yeast mitotic recombination hotspot HOT1: RNA polymerase I and multiple cis-acting sequences. Genetics 1995;141:845-55. [PMID: 8582631 PMCID: PMC1206849 DOI: 10.1093/genetics/141.3.845] [Citation(s) in RCA: 41] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/31/2023]  Open
Number Cited by Other Article(s)
1
Haig D. Concerted evolution of ribosomal DNA: Somatic peace amid germinal strife: Intranuclear and cellular selection maintain the quality of rRNA. Bioessays 2021;43:e2100179. [PMID: 34704616 DOI: 10.1002/bies.202100179] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/22/2021] [Accepted: 10/12/2021] [Indexed: 11/10/2022]
2
Kara N, Krueger F, Rugg-Gunn P, Houseley J. Genome-wide analysis of DNA replication and DNA double-strand breaks using TrAEL-seq. PLoS Biol 2021;19:e3000886. [PMID: 33760805 PMCID: PMC8021198 DOI: 10.1371/journal.pbio.3000886] [Citation(s) in RCA: 29] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/29/2020] [Revised: 04/05/2021] [Accepted: 02/17/2021] [Indexed: 02/07/2023]  Open
3
Naseeb S, Carter Z, Minnis D, Donaldson I, Zeef L, Delneri D. Widespread Impact of Chromosomal Inversions on Gene Expression Uncovers Robustness via Phenotypic Buffering. Mol Biol Evol 2016;33:1679-96. [PMID: 26929245 PMCID: PMC4915352 DOI: 10.1093/molbev/msw045] [Citation(s) in RCA: 32] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
4
Choudhury M, Zaman S, Jiang JC, Jazwinski SM, Bastia D. Mechanism of regulation of 'chromosome kissing' induced by Fob1 and its physiological significance. Genes Dev 2015;29:1188-201. [PMID: 26063576 PMCID: PMC4470286 DOI: 10.1101/gad.260844.115] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
5
Shapiro JA. Physiology of the read-write genome. J Physiol 2014;592:2319-41. [PMID: 24882816 PMCID: PMC4048091 DOI: 10.1113/jphysiol.2014.271130] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/14/2014] [Accepted: 03/09/2014] [Indexed: 12/13/2022]  Open
6
Gaillard H, Herrera-Moyano E, Aguilera A. Transcription-associated genome instability. Chem Rev 2013;113:8638-61. [PMID: 23597121 DOI: 10.1021/cr400017y] [Citation(s) in RCA: 49] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/26/2022]
7
Lin C, Yang L, Rosenfeld MG. Molecular logic underlying chromosomal translocations, random or non-random? Adv Cancer Res 2012;113:241-79. [PMID: 22429857 DOI: 10.1016/b978-0-12-394280-7.00015-4] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/06/2023]
8
Houseley J, Tollervey D. Repeat expansion in the budding yeast ribosomal DNA can occur independently of the canonical homologous recombination machinery. Nucleic Acids Res 2011;39:8778-91. [PMID: 21768125 PMCID: PMC3203602 DOI: 10.1093/nar/gkr589] [Citation(s) in RCA: 34] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
9
de la Loza MCD, Wellinger RE, Aguilera A. Stimulation of direct-repeat recombination by RNA polymerase III transcription. DNA Repair (Amst) 2009;8:620-6. [PMID: 19168400 DOI: 10.1016/j.dnarep.2008.12.010] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2008] [Revised: 12/13/2008] [Accepted: 12/15/2008] [Indexed: 11/18/2022]
10
Torres-Rosell J, De Piccoli G, Aragón L. Can eukaryotic cells monitor the presence of unreplicated DNA? Cell Div 2007;2:19. [PMID: 17623079 PMCID: PMC1976610 DOI: 10.1186/1747-1028-2-19] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2007] [Accepted: 07/10/2007] [Indexed: 11/24/2022]  Open
11
Labib K, Hodgson B. Replication fork barriers: pausing for a break or stalling for time? EMBO Rep 2007;8:346-53. [PMID: 17401409 PMCID: PMC1852754 DOI: 10.1038/sj.embor.7400940] [Citation(s) in RCA: 116] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2006] [Accepted: 01/30/2007] [Indexed: 11/09/2022]  Open
12
Oakes ML, Johzuka K, Vu L, Eliason K, Nomura M. Expression of rRNA genes and nucleolus formation at ectopic chromosomal sites in the yeast Saccharomyces cerevisiae. Mol Cell Biol 2006;26:6223-38. [PMID: 16880531 PMCID: PMC1592796 DOI: 10.1128/mcb.02324-05] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
13
Hepfer CE, Arnold-Croop S, Fogell H, Steudel KG, Moon M, Roff A, Zaikoski S, Rickman A, Komsisky K, Harbaugh DL, Lang GI, Keil RL. DEG1, encoding the tRNA:pseudouridine synthase Pus3p, impacts HOT1-stimulated recombination in Saccharomyces cerevisiae. Mol Genet Genomics 2005;274:528-38. [PMID: 16231152 DOI: 10.1007/s00438-005-0042-3] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/19/2005] [Accepted: 08/06/2005] [Indexed: 11/28/2022]
14
Calzada A, Hodgson B, Kanemaki M, Bueno A, Labib K. Molecular anatomy and regulation of a stable replisome at a paused eukaryotic DNA replication fork. Genes Dev 2005;19:1905-19. [PMID: 16103218 PMCID: PMC1186190 DOI: 10.1101/gad.337205] [Citation(s) in RCA: 215] [Impact Index Per Article: 10.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
15
Criniti A, Simonazzi G, Cassanelli S, Ferrari M, Bizzaro D, Manicardi GC. X-linked heterochromatin distribution in the holocentric chromosomes of the green apple aphid Aphis pomi. Genetica 2005;124:93-8. [PMID: 16011007 DOI: 10.1007/s10709-004-8154-y] [Citation(s) in RCA: 15] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
16
Burkhalter MD, Sogo JM. rDNA enhancer affects replication initiation and mitotic recombination: Fob1 mediates nucleolytic processing independently of replication. Mol Cell 2004;15:409-21. [PMID: 15304221 DOI: 10.1016/j.molcel.2004.06.024] [Citation(s) in RCA: 64] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/08/2004] [Revised: 05/18/2004] [Accepted: 05/24/2004] [Indexed: 02/04/2023]
17
Prusty R, Keil RL. SCH9, a putative protein kinase from Saccharomyces cerevisiae, affects HOT1 -stimulated recombination. Mol Genet Genomics 2004;272:264-74. [PMID: 15349770 DOI: 10.1007/s00438-004-1049-x] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/24/2004] [Accepted: 07/21/2004] [Indexed: 10/26/2022]
18
Serizawa N, Horiuchi T, Kobayashi T. Transcription-mediated hyper-recombination in HOT1. Genes Cells 2004;9:305-15. [PMID: 15066122 DOI: 10.1111/j.1356-9597.2004.00729.x] [Citation(s) in RCA: 8] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
19
Kobayashi T. The replication fork barrier site forms a unique structure with Fob1p and inhibits the replication fork. Mol Cell Biol 2004;23:9178-88. [PMID: 14645529 PMCID: PMC309713 DOI: 10.1128/mcb.23.24.9178-9188.2003] [Citation(s) in RCA: 126] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
20
Mohanty BK, Bastia D. Binding of the replication terminator protein Fob1p to the Ter sites of yeast causes polar fork arrest. J Biol Chem 2003;279:1932-41. [PMID: 14576157 DOI: 10.1074/jbc.m309078200] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
21
Huang J, Moazed D. Association of the RENT complex with nontranscribed and coding regions of rDNA and a regional requirement for the replication fork block protein Fob1 in rDNA silencing. Genes Dev 2003;17:2162-76. [PMID: 12923057 PMCID: PMC196457 DOI: 10.1101/gad.1108403] [Citation(s) in RCA: 185] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]
22
Takeuchi Y, Horiuchi T, Kobayashi T. Transcription-dependent recombination and the role of fork collision in yeast rDNA. Genes Dev 2003;17:1497-506. [PMID: 12783853 PMCID: PMC196080 DOI: 10.1101/gad.1085403] [Citation(s) in RCA: 201] [Impact Index Per Article: 9.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
23
Benguría A, Hernández P, Krimer DB, Schvartzman JB. Sir2p suppresses recombination of replication forks stalled at the replication fork barrier of ribosomal DNA in Saccharomyces cerevisiae. Nucleic Acids Res 2003;31:893-8. [PMID: 12560485 PMCID: PMC149208 DOI: 10.1093/nar/gkg188] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
24
González-Barrera S, García-Rubio M, Aguilera A. Transcription and double-strand breaks induce similar mitotic recombination events in Saccharomyces cerevisiae. Genetics 2002;162:603-14. [PMID: 12399375 PMCID: PMC1462300 DOI: 10.1093/genetics/162.2.603] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
25
Aguilera A. The connection between transcription and genomic instability. EMBO J 2002;21:195-201. [PMID: 11823412 PMCID: PMC125829 DOI: 10.1093/emboj/21.3.195] [Citation(s) in RCA: 251] [Impact Index Per Article: 10.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/13/2023]  Open
26
Ganley ARD, Scott B. Concerted evolution in the ribosomal RNA genes of an Epichloë endophyte hybrid: comparison between tandemly arranged rDNA and dispersed 5S rrn genes. Fungal Genet Biol 2002;35:39-51. [PMID: 11860264 DOI: 10.1006/fgbi.2001.1309] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
27
Johzuka K, Horiuchi T. Replication fork block protein, Fob1, acts as an rDNA region specific recombinator in S. cerevisiae. Genes Cells 2002;7:99-113. [PMID: 11895475 DOI: 10.1046/j.1356-9597.2001.00508.x] [Citation(s) in RCA: 72] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]
28
Wai H, Johzuka K, Vu L, Eliason K, Kobayashi T, Horiuchi T, Nomura M. Yeast RNA polymerase I enhancer is dispensable for transcription of the chromosomal rRNA gene and cell growth, and its apparent transcription enhancement from ectopic promoters requires Fob1 protein. Mol Cell Biol 2001;21:5541-53. [PMID: 11463836 PMCID: PMC87276 DOI: 10.1128/mcb.21.16.5541-5553.2001] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/08/2023]  Open
29
Kobayashi T, Nomura M, Horiuchi T. Identification of DNA cis elements essential for expansion of ribosomal DNA repeats in Saccharomyces cerevisiae. Mol Cell Biol 2001;21:136-47. [PMID: 11113188 PMCID: PMC88787 DOI: 10.1128/mcb.21.1.136-147.2001] [Citation(s) in RCA: 59] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/20/2022]  Open
30
Gallardo M, Aguilera A. A new hyperrecombination mutation identifies a novel yeast gene, THP1, connecting transcription elongation with mitotic recombination. Genetics 2001;157:79-89. [PMID: 11139493 PMCID: PMC1461480 DOI: 10.1093/genetics/157.1.79] [Citation(s) in RCA: 52] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
31
Saxe D, Datta A, Jinks-Robertson S. Stimulation of mitotic recombination events by high levels of RNA polymerase II transcription in yeast. Mol Cell Biol 2000;20:5404-14. [PMID: 10891481 PMCID: PMC85992 DOI: 10.1128/mcb.20.15.5404-5414.2000] [Citation(s) in RCA: 38] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/07/2023]  Open
32
Ward TR, Hoang ML, Prusty R, Lau CK, Keil RL, Fangman WL, Brewer BJ. Ribosomal DNA replication fork barrier and HOT1 recombination hot spot: shared sequences but independent activities. Mol Cell Biol 2000;20:4948-57. [PMID: 10848619 PMCID: PMC85945 DOI: 10.1128/mcb.20.13.4948-4957.2000] [Citation(s) in RCA: 49] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]  Open
33
Fierro F, Martín JF. Molecular mechanisms of chromosomal rearrangement in fungi. Crit Rev Microbiol 1999;25:1-17. [PMID: 10342097 DOI: 10.1080/10408419991299185] [Citation(s) in RCA: 49] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/25/2022]
34
Mandrioli M, Manicardi GC, Bizzaro D, Bianchi U. NOR heteromorphism within a parthenogenetic lineage of the aphid Megoura viciae. Chromosome Res 1999;7:157-62. [PMID: 10328627 DOI: 10.1023/a:1009215721904] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
35
Kobayashi T, Heck DJ, Nomura M, Horiuchi T. Expansion and contraction of ribosomal DNA repeats in Saccharomyces cerevisiae: requirement of replication fork blocking (Fob1) protein and the role of RNA polymerase I. Genes Dev 1998;12:3821-30. [PMID: 9869636 PMCID: PMC317266 DOI: 10.1101/gad.12.24.3821] [Citation(s) in RCA: 305] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/24/2022]
36
Zhao A, Guo A, Liu Z, Pape L. Molecular cloning and analysis of Schizosaccharomyces pombe Reb1p: sequence-specific recognition of two sites in the far upstream rDNA intergenic spacer. Nucleic Acids Res 1997;25:904-10. [PMID: 9016645 PMCID: PMC146519 DOI: 10.1093/nar/25.4.904] [Citation(s) in RCA: 35] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]  Open
37
Liu Z, Zhao A, Chen L, Pape L. Activated levels of rRNA synthesis in fission yeast are driven by an intergenic rDNA region positioned over 2500 nucleotides upstream of the initiation site. Nucleic Acids Res 1997;25:659-67. [PMID: 9016610 PMCID: PMC146475 DOI: 10.1093/nar/25.3.659] [Citation(s) in RCA: 14] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/03/2023]  Open
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