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For: Wall JD, Andolfatto P, Przeworski M. Testing Models of Selection and Demography inDrosophila simulans. Genetics 2002;162:203-16. [PMID: 12242234 PMCID: PMC1462246 DOI: 10.1093/genetics/162.1.203] [Citation(s) in RCA: 141] [Impact Index Per Article: 6.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
Number Cited by Other Article(s)
1
Gwee CY, Metzler D, Fuchs J, Wolf JBW. Reconciling Gene Tree Discordance and Biogeography in European Crows. Mol Ecol 2025;34:e17764. [PMID: 40208017 PMCID: PMC12051742 DOI: 10.1111/mec.17764] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/31/2024] [Revised: 03/20/2025] [Accepted: 03/31/2025] [Indexed: 04/11/2025]
2
Spurley WJ, Payseur BA. The Breeding Sex Ratio Interacts With Demographic History to Shape Comparative Patterns of Variation on the X Chromosome and the Autosomes. Genome Biol Evol 2025;17:evaf035. [PMID: 40036701 PMCID: PMC11913216 DOI: 10.1093/gbe/evaf035] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2024] [Revised: 02/18/2025] [Accepted: 02/25/2025] [Indexed: 03/06/2025]  Open
3
Konopiński MK, Fijarczyk AM, Biedrzycka A. Complex patterns shape immune genes diversity during invasion of common raccoon in Europe - Selection in action despite genetic drift. Evol Appl 2023;16:134-151. [PMID: 36699132 PMCID: PMC9850017 DOI: 10.1111/eva.13517] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/23/2022] [Revised: 11/24/2022] [Accepted: 11/28/2022] [Indexed: 12/14/2022]  Open
4
Li YS, Liao PC, Chang CT, Hwang SY. Pattern of Adaptive Divergence in Zingiber kawagoii Hayata (Zingiberaceae) along a Narrow Latitudinal Range. PLANTS 2022;11:plants11192490. [PMID: 36235357 PMCID: PMC9573048 DOI: 10.3390/plants11192490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 08/05/2022] [Revised: 09/16/2022] [Accepted: 09/20/2022] [Indexed: 11/30/2022]
5
Flanagan BA, Krueger-Hadfield SA, Murren CJ, Nice CC, Strand AE, Sotka EE. Founder effects shape linkage disequilibrium and genomic diversity of a partially clonal invader. Mol Ecol 2021;30:1962-1978. [PMID: 33604965 DOI: 10.1111/mec.15854] [Citation(s) in RCA: 22] [Impact Index Per Article: 5.5] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Revised: 01/18/2021] [Accepted: 02/01/2021] [Indexed: 12/20/2022]
6
Schield DR, Scordato ESC, Smith CCR, Carter JK, Cherkaoui SI, Gombobaatar S, Hajib S, Hanane S, Hund AK, Koyama K, Liang W, Liu Y, Magri N, Rubtsov A, Sheta B, Turbek SP, Wilkins MR, Yu L, Safran RJ. Sex-linked genetic diversity and differentiation in a globally distributed avian species complex. Mol Ecol 2021;30:2313-2332. [PMID: 33720472 DOI: 10.1111/mec.15885] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/15/2020] [Revised: 02/19/2021] [Accepted: 03/10/2021] [Indexed: 12/15/2022]
7
Qin M, Zhang N, Zhu S, Yue C, Huang J, Dong H, Lu Y. Development of polymorphic microsatellite markers for the Tertiary relict tree species Taiwania cryptomerioides (Cupressaceae) in East Asia. Mol Biol Rep 2021;48:3031-3036. [PMID: 33759052 DOI: 10.1007/s11033-021-06287-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/12/2021] [Accepted: 03/11/2021] [Indexed: 10/21/2022]
8
Changes in life history and population size can explain the relative neutral diversity levels on X and autosomes in extant human populations. Proc Natl Acad Sci U S A 2020;117:20063-20069. [PMID: 32747577 DOI: 10.1073/pnas.1915664117] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/17/2023]  Open
9
Life History Effects on Neutral Diversity Levels of Autosomes and Sex Chromosomes. Genetics 2020;215:1133-1142. [PMID: 32554702 DOI: 10.1534/genetics.120.303119] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2020] [Accepted: 06/15/2020] [Indexed: 12/11/2022]  Open
10
Li YS, Shih KM, Chang CT, Chung JD, Hwang SY. Testing the Effect of Mountain Ranges as a Physical Barrier to Current Gene Flow and Environmentally Dependent Adaptive Divergence in Cunninghamia konishii (Cupressaceae). Front Genet 2019;10:742. [PMID: 31447888 PMCID: PMC6697026 DOI: 10.3389/fgene.2019.00742] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/01/2019] [Accepted: 07/15/2019] [Indexed: 11/29/2022]  Open
11
Mughal MR, DeGiorgio M. Localizing and Classifying Adaptive Targets with Trend Filtered Regression. Mol Biol Evol 2019;36:252-270. [PMID: 30398642 PMCID: PMC6409434 DOI: 10.1093/molbev/msy205] [Citation(s) in RCA: 29] [Impact Index Per Article: 4.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022]  Open
12
Jensen JD, Payseur BA, Stephan W, Aquadro CF, Lynch M, Charlesworth D, Charlesworth B. The importance of the Neutral Theory in 1968 and 50 years on: A response to Kern and Hahn 2018. Evolution 2019;73:111-114. [PMID: 30460993 PMCID: PMC6496948 DOI: 10.1111/evo.13650] [Citation(s) in RCA: 95] [Impact Index Per Article: 15.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/30/2018] [Accepted: 11/09/2018] [Indexed: 01/31/2023]
13
Signor SA, New FN, Nuzhdin S. A Large Panel of Drosophila simulans Reveals an Abundance of Common Variants. Genome Biol Evol 2018;10:189-206. [PMID: 29228179 PMCID: PMC5767965 DOI: 10.1093/gbe/evx262] [Citation(s) in RCA: 32] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 12/07/2017] [Indexed: 01/03/2023]  Open
14
Comeron JM. Background selection as null hypothesis in population genomics: insights and challenges from Drosophila studies. Philos Trans R Soc Lond B Biol Sci 2018;372:rstb.2016.0471. [PMID: 29109230 PMCID: PMC5698629 DOI: 10.1098/rstb.2016.0471] [Citation(s) in RCA: 73] [Impact Index Per Article: 10.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/04/2017] [Indexed: 12/11/2022]  Open
15
Hsieh P, Hallmark B, Watkins J, Karafet TM, Osipova LP, Gutenkunst RN, Hammer MF. Exome Sequencing Provides Evidence of Polygenic Adaptation to a Fat-Rich Animal Diet in Indigenous Siberian Populations. Mol Biol Evol 2018;34:2913-2926. [PMID: 28962010 DOI: 10.1093/molbev/msx226] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/14/2022]  Open
16
Ghenu AH, Blanckaert A, Butlin RK, Kulmuni J, Bank C. Conflict between heterozygote advantage and hybrid incompatibility in haplodiploids (and sex chromosomes). Mol Ecol 2018;27:3935-3949. [PMID: 29328538 DOI: 10.1111/mec.14482] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2017] [Revised: 12/19/2017] [Accepted: 12/22/2017] [Indexed: 01/08/2023]
17
Detecting Recent Positive Selection with a Single Locus Test Bipartitioning the Coalescent Tree. Genetics 2017;208:791-805. [PMID: 29217523 DOI: 10.1534/genetics.117.300401] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/14/2017] [Accepted: 12/01/2017] [Indexed: 01/09/2023]  Open
18
Villanueva‐Cañas JL, Rech GE, Cara MAR, González J. Beyond SNP s: how to detect selection on transposable element insertions. Methods Ecol Evol 2017. [DOI: 10.1111/2041-210x.12781] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
19
Kern AD, Schrider DR. Discoal: flexible coalescent simulations with selection. Bioinformatics 2016;32:3839-3841. [PMID: 27559153 DOI: 10.1093/bioinformatics/btw556] [Citation(s) in RCA: 67] [Impact Index Per Article: 7.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/02/2016] [Revised: 08/21/2016] [Accepted: 08/22/2016] [Indexed: 11/14/2022]  Open
20
Hsieh P, Veeramah KR, Lachance J, Tishkoff SA, Wall JD, Hammer MF, Gutenkunst RN. Whole-genome sequence analyses of Western Central African Pygmy hunter-gatherers reveal a complex demographic history and identify candidate genes under positive natural selection. Genome Res 2016;26:279-90. [PMID: 26888263 PMCID: PMC4772011 DOI: 10.1101/gr.192971.115] [Citation(s) in RCA: 47] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2015] [Accepted: 01/07/2016] [Indexed: 12/20/2022]
21
A linkage disequilibrium perspective on the genetic mosaic of speciation in two hybridizing Mediterranean white oaks. Heredity (Edinb) 2014;114:373-86. [PMID: 25515016 DOI: 10.1038/hdy.2014.113] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2014] [Revised: 10/11/2014] [Accepted: 11/12/2014] [Indexed: 01/09/2023]  Open
22
Arbiza L, Gottipati S, Siepel A, Keinan A. Contrasting X-linked and autosomal diversity across 14 human populations. Am J Hum Genet 2014;94:827-44. [PMID: 24836452 DOI: 10.1016/j.ajhg.2014.04.011] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2014] [Accepted: 04/15/2014] [Indexed: 12/29/2022]  Open
23
Detecting selection in the blue crab, Callinectes sapidus, using DNA sequence data from multiple nuclear protein-coding genes. PLoS One 2014;9:e99081. [PMID: 24896825 PMCID: PMC4045945 DOI: 10.1371/journal.pone.0099081] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/26/2013] [Accepted: 05/11/2014] [Indexed: 11/23/2022]  Open
24
Faster-X adaptive protein evolution in house mice. Genetics 2013;196:1131-43. [PMID: 24361937 DOI: 10.1534/genetics.113.158246] [Citation(s) in RCA: 54] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]  Open
25
Lee YCG, Langley CH, Begun DJ. Differential strengths of positive selection revealed by hitchhiking effects at small physical scales in Drosophila melanogaster. Mol Biol Evol 2013;31:804-16. [PMID: 24361994 DOI: 10.1093/molbev/mst270] [Citation(s) in RCA: 9] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/22/2023]  Open
26
Robinson MC, Stone EA, Singh ND. Population genomic analysis reveals no evidence for GC-biased gene conversion in Drosophila melanogaster. Mol Biol Evol 2013;31:425-33. [PMID: 24214536 DOI: 10.1093/molbev/mst220] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/19/2022]  Open
27
Divergent selection and local adaptation in disjunct populations of an endangered conifer, Keteleeria davidiana var. formosana (Pinaceae). PLoS One 2013;8:e70162. [PMID: 23894608 PMCID: PMC3718774 DOI: 10.1371/journal.pone.0070162] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/14/2013] [Accepted: 06/16/2013] [Indexed: 12/18/2022]  Open
28
Chan AH, Jenkins PA, Song YS. Genome-wide fine-scale recombination rate variation in Drosophila melanogaster. PLoS Genet 2012;8:e1003090. [PMID: 23284288 PMCID: PMC3527307 DOI: 10.1371/journal.pgen.1003090] [Citation(s) in RCA: 191] [Impact Index Per Article: 14.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/04/2012] [Accepted: 09/29/2012] [Indexed: 01/18/2023]  Open
29
Olson-Manning CF, Wagner MR, Mitchell-Olds T. Adaptive evolution: evaluating empirical support for theoretical predictions. Nat Rev Genet 2012;13:867-77. [PMID: 23154809 PMCID: PMC3748133 DOI: 10.1038/nrg3322] [Citation(s) in RCA: 143] [Impact Index Per Article: 11.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/16/2022]
30
Langley CH, Stevens K, Cardeno C, Lee YCG, Schrider DR, Pool JE, Langley SA, Suarez C, Corbett-Detig RB, Kolaczkowski B, Fang S, Nista PM, Holloway AK, Kern AD, Dewey CN, Song YS, Hahn MW, Begun DJ. Genomic variation in natural populations of Drosophila melanogaster. Genetics 2012;192:533-98. [PMID: 22673804 PMCID: PMC3454882 DOI: 10.1534/genetics.112.142018] [Citation(s) in RCA: 250] [Impact Index Per Article: 19.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2011] [Accepted: 05/24/2012] [Indexed: 02/07/2023]  Open
31
Zhou Q, Zhu HM, Huang QF, Zhao L, Zhang GJ, Roy SW, Vicoso B, Xuan ZL, Ruan J, Zhang Y, Zhao RP, Ye C, Zhang XQ, Wang J, Wang W, Bachtrog D. Deciphering neo-sex and B chromosome evolution by the draft genome of Drosophila albomicans. BMC Genomics 2012;13:109. [PMID: 22439699 PMCID: PMC3353239 DOI: 10.1186/1471-2164-13-109] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/25/2011] [Accepted: 03/22/2012] [Indexed: 11/29/2022]  Open
32
The role of background selection in shaping patterns of molecular evolution and variation: evidence from variability on the Drosophila X chromosome. Genetics 2012;191:233-46. [PMID: 22377629 DOI: 10.1534/genetics.111.138073] [Citation(s) in RCA: 94] [Impact Index Per Article: 7.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
33
Cardoso-Moreira M, Emerson JJ, Clark AG, Long M. Drosophila duplication hotspots are associated with late-replicating regions of the genome. PLoS Genet 2011;7:e1002340. [PMID: 22072977 PMCID: PMC3207856 DOI: 10.1371/journal.pgen.1002340] [Citation(s) in RCA: 29] [Impact Index Per Article: 2.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2011] [Accepted: 08/26/2011] [Indexed: 12/22/2022]  Open
34
Jaquiéry J, Stoeckel S, Rispe C, Mieuzet L, Legeai F, Simon JC. Accelerated evolution of sex chromosomes in aphids, an x0 system. Mol Biol Evol 2011;29:837-47. [PMID: 21998277 DOI: 10.1093/molbev/msr252] [Citation(s) in RCA: 31] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/26/2023]  Open
35
Verspoor RL, Haddrill PR. Genetic diversity, population structure and Wolbachia infection status in a worldwide sample of Drosophila melanogaster and D. simulans populations. PLoS One 2011;6:e26318. [PMID: 22022599 PMCID: PMC3192181 DOI: 10.1371/journal.pone.0026318] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2011] [Accepted: 09/23/2011] [Indexed: 12/03/2022]  Open
36
Qanbari S, Gianola D, Hayes B, Schenkel F, Miller S, Moore S, Thaller G, Simianer H. Application of site and haplotype-frequency based approaches for detecting selection signatures in cattle. BMC Genomics 2011;12:318. [PMID: 21679429 PMCID: PMC3146955 DOI: 10.1186/1471-2164-12-318] [Citation(s) in RCA: 115] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/30/2010] [Accepted: 06/16/2011] [Indexed: 11/12/2022]  Open
37
Legrand D, Chenel T, Campagne C, Lachaise D, Cariou ML. Inter-island divergence within Drosophila mauritiana, a species of the D. simulans complex: Past history and/or speciation in progress? Mol Ecol 2011;20:2787-804. [PMID: 21599771 DOI: 10.1111/j.1365-294x.2011.05127.x] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
38
Obbard DJ, Jiggins FM, Bradshaw NJ, Little TJ. Recent and recurrent selective sweeps of the antiviral RNAi gene Argonaute-2 in three species of Drosophila. Mol Biol Evol 2011;28:1043-56. [PMID: 20978039 PMCID: PMC3021790 DOI: 10.1093/molbev/msq280] [Citation(s) in RCA: 46] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/21/2022]  Open
39
Siol M, Wright SI, Barrett SCH. The population genomics of plant adaptation. THE NEW PHYTOLOGIST 2010;188:313-32. [PMID: 20696011 DOI: 10.1111/j.1469-8137.2010.03401.x] [Citation(s) in RCA: 61] [Impact Index Per Article: 4.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/16/2023]
40
Storz JF, Wheat CW. Integrating evolutionary and functional approaches to infer adaptation at specific loci. Evolution 2010;64:2489-509. [PMID: 20500215 PMCID: PMC2981648 DOI: 10.1111/j.1558-5646.2010.01044.x] [Citation(s) in RCA: 96] [Impact Index Per Article: 6.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
41
Yukilevich R, Turner TL, Aoki F, Nuzhdin SV, True JR. Patterns and processes of genome-wide divergence between North American and African Drosophila melanogaster. Genetics 2010;186:219-39. [PMID: 20551441 PMCID: PMC2940289 DOI: 10.1534/genetics.110.117366] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2010] [Accepted: 05/18/2010] [Indexed: 01/21/2023]  Open
42
Optimal neutrality tests based on the frequency spectrum. Genetics 2010;186:353-65. [PMID: 20610408 DOI: 10.1534/genetics.110.118570] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
43
Keinan A, Reich D. Human population differentiation is strongly correlated with local recombination rate. PLoS Genet 2010;6:e1000886. [PMID: 20361044 PMCID: PMC2845648 DOI: 10.1371/journal.pgen.1000886] [Citation(s) in RCA: 67] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2009] [Accepted: 02/24/2010] [Indexed: 11/19/2022]  Open
44
Pool JE, Hellmann I, Jensen JD, Nielsen R. Population genetic inference from genomic sequence variation. Genome Res 2010;20:291-300. [PMID: 20067940 DOI: 10.1101/gr.079509.108] [Citation(s) in RCA: 149] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/23/2023]
45
Yu F, Keinan A, Chen H, Ferland RJ, Hill RS, Mignault AA, Walsh CA, Reich D. Detecting natural selection by empirical comparison to random regions of the genome. Hum Mol Genet 2009;18:4853-67. [PMID: 19783549 PMCID: PMC2778377 DOI: 10.1093/hmg/ddp457] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2009] [Accepted: 09/23/2009] [Indexed: 11/30/2022]  Open
46
Sackton TB, Kulathinal RJ, Bergman CM, Quinlan AR, Dopman EB, Carneiro M, Marth GT, Hartl DL, Clark AG. Population genomic inferences from sparse high-throughput sequencing of two populations of Drosophila melanogaster. Genome Biol Evol 2009;1:449-65. [PMID: 20333214 PMCID: PMC2839279 DOI: 10.1093/gbe/evp048] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 11/14/2009] [Indexed: 12/20/2022]  Open
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Recurrent selection on the Winters sex-ratio genes in Drosophila simulans. Genetics 2009;184:253-65. [PMID: 19897749 DOI: 10.1534/genetics.109.109587] [Citation(s) in RCA: 35] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/12/2023]  Open
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Chapman JR, Nakagawa S, Coltman DW, Slate J, Sheldon BC. A quantitative review of heterozygosity-fitness correlations in animal populations. Mol Ecol 2009;18:2746-65. [PMID: 19500255 DOI: 10.1111/j.1365-294x.2009.04247.x] [Citation(s) in RCA: 308] [Impact Index Per Article: 19.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
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Quang ND, Ikeda S, Harada K. Patterns of Nucleotide Diversity at the Methionine Synthase Locus in Fragmented and Continuous Populations of a Wind-Pollinated Tree, Quercus mongolica var. crispula. J Hered 2009;100:762-70. [PMID: 19531732 DOI: 10.1093/jhered/esp036] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/14/2022]  Open
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Species-wide genetic variation and demographic history of Drosophila sechellia, a species lacking population structure. Genetics 2009;182:1197-206. [PMID: 19506309 DOI: 10.1534/genetics.108.092080] [Citation(s) in RCA: 47] [Impact Index Per Article: 2.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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