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Opdensteinen P, Charudattan R, Hong JC, Rosskopf EN, Steinmetz NF. Biochemical and nanotechnological approaches to combat phytoparasitic nematodes. PLANT BIOTECHNOLOGY JOURNAL 2024. [PMID: 38831638 DOI: 10.1111/pbi.14359] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/18/2023] [Revised: 03/09/2024] [Accepted: 04/05/2024] [Indexed: 06/05/2024]
Abstract
The foundation of most food production systems underpinning global food security is the careful management of soil resources. Embedded in the concept of soil health is the impact of diverse soil-borne pests and pathogens, and phytoparasitic nematodes represent a particular challenge. Root-knot nematodes and cyst nematodes are severe threats to agriculture, accounting for annual yield losses of US$157 billion. The control of soil-borne phytoparasitic nematodes conventionally relies on the use of chemical nematicides, which can have adverse effects on the environment and human health due to their persistence in soil, plants, and water. Nematode-resistant plants offer a promising alternative, but genetic resistance is species-dependent, limited to a few crops, and breeding and deploying resistant cultivars often takes years. Novel approaches for the control of phytoparasitic nematodes are therefore required, those that specifically target these parasites in the ground whilst minimizing the impact on the environment, agricultural ecosystems, and human health. In addition to the development of next-generation, environmentally safer nematicides, promising biochemical strategies include the combination of RNA interference (RNAi) with nanomaterials that ensure the targeted delivery and controlled release of double-stranded RNA. Genome sequencing has identified more than 75 genes in root knot and cyst nematodes that have been targeted with RNAi so far. But despite encouraging results, the delivery of dsRNA to nematodes in the soil remains inefficient. In this review article, we describe the state-of-the-art RNAi approaches targeting phytoparasitic nematodes and consider the potential benefits of nanotechnology to improve dsRNA delivery.
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Affiliation(s)
- Patrick Opdensteinen
- Department of NanoEngineering, University of California, San Diego, La Jolla, California, USA
- Center for Nano-ImmunoEngineering, University of California, San Diego, La Jolla, California, USA
- Shu and K.C. Chien and Peter Farrell Collaboratory, University of California, San Diego, La Jolla, California, USA
| | | | - Jason C Hong
- USDA-ARS-U.S. Horticultural Research Laboratory, Fort Pierce, Florida, USA
| | - Erin N Rosskopf
- USDA-ARS-U.S. Horticultural Research Laboratory, Fort Pierce, Florida, USA
| | - Nicole F Steinmetz
- Department of NanoEngineering, University of California, San Diego, La Jolla, California, USA
- Center for Nano-ImmunoEngineering, University of California, San Diego, La Jolla, California, USA
- Shu and K.C. Chien and Peter Farrell Collaboratory, University of California, San Diego, La Jolla, California, USA
- Department of Bioengineering, University of California, San Diego, La Jolla, California, USA
- Department of Radiology, University of California, San Diego, La Jolla, California, USA
- Institute for Materials Discovery and Design, University of California, San Diego, La Jolla, California, USA
- Moores Cancer Center, University of California, San Diego, La Jolla, California, USA
- Center for Engineering in Cancer, Institute of Engineering in Medicine, University of California, San Diego, La Jolla, California, USA
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Kolombia YA, Kumar PL, Lopez-Montes AJ, Claudius-Cole AO, Maroya NG, Viaene N, Bert W, Coyne DL. An Improved Phenotyping Method for Evaluation of Yam ( Dioscorea spp.) Resistance to Nematodes Belonging to the Genera Meloidogyne and Scutellonema. PLANTS (BASEL, SWITZERLAND) 2024; 13:1175. [PMID: 38732390 PMCID: PMC11085691 DOI: 10.3390/plants13091175] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2024] [Revised: 04/08/2024] [Accepted: 04/16/2024] [Indexed: 05/13/2024]
Abstract
Phenotyping yam (Dioscorea spp.) germplasm for resistance to parasitic nematodes is hampered by the lack of an efficient screening method. In this study, we developed a new method using rooted yam vine cuttings and yam plantlets generated from semi-autotrophic hydroponics (SAHs) propagation for phenotyping yam genotypes for nematode resistance. The method was evaluated using 26 genotypes of D. rotundata for their reaction to Scutellonema bradys and four root-knot nematode species, Meloidogyne arenaria, M. enterolobii, M. incognita, and M. javanica. Yam plantlets established in nursery bags filled with steam-sterilized soil were used for screening against single nematode species. Plants were inoculated four weeks after planting and assessed for nematode damage eight weeks later. A severity rating scale was used to classify genotypes as resistant, tolerant, or susceptible determine based on the nematode feeding damage on tubers and the rate of nematode multiplication in the roots of inoculated plants. The results demonstrated putative resistance and tolerance against S. bradys in 58% of the genotypes and 88%, 65%, 65%, and 58% against M. arenaria, M. javanica, M. incognita, and M. enterolobii, respectively. The method is rapid, flexible, and seasonally independent, permitting year-round screening under controlled conditions. This method increases the throughput and speed of phenotyping and improves the selection process.
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Affiliation(s)
- Yao A. Kolombia
- International Institute of Tropical Agriculture (IITA), PMB 5320, Oyo Road, Ibadan P.O. Box 200001, Nigeria; (P.L.K.); (A.J.L.-M.); (A.O.C.-C.); (N.G.M.); (D.L.C.)
- Nematology Research Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000 Gent, Belgium; (N.V.); (W.B.)
| | - P. Lava Kumar
- International Institute of Tropical Agriculture (IITA), PMB 5320, Oyo Road, Ibadan P.O. Box 200001, Nigeria; (P.L.K.); (A.J.L.-M.); (A.O.C.-C.); (N.G.M.); (D.L.C.)
| | - Antonio J. Lopez-Montes
- International Institute of Tropical Agriculture (IITA), PMB 5320, Oyo Road, Ibadan P.O. Box 200001, Nigeria; (P.L.K.); (A.J.L.-M.); (A.O.C.-C.); (N.G.M.); (D.L.C.)
| | - Abiodun O. Claudius-Cole
- International Institute of Tropical Agriculture (IITA), PMB 5320, Oyo Road, Ibadan P.O. Box 200001, Nigeria; (P.L.K.); (A.J.L.-M.); (A.O.C.-C.); (N.G.M.); (D.L.C.)
- Department of Crop Protection and Environmental Biology, University of Ibadan, Ibadan P.O. Box 200132, Nigeria
| | - Norbert G. Maroya
- International Institute of Tropical Agriculture (IITA), PMB 5320, Oyo Road, Ibadan P.O. Box 200001, Nigeria; (P.L.K.); (A.J.L.-M.); (A.O.C.-C.); (N.G.M.); (D.L.C.)
| | - Nicole Viaene
- Nematology Research Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000 Gent, Belgium; (N.V.); (W.B.)
- Flanders Research Institute for Agriculture, Fisheries and Food (ILVO), Burgemeester Van Gansberghelaan 96, 9820 Merelbeke, Belgium
| | - Wim Bert
- Nematology Research Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000 Gent, Belgium; (N.V.); (W.B.)
| | - Danny L. Coyne
- International Institute of Tropical Agriculture (IITA), PMB 5320, Oyo Road, Ibadan P.O. Box 200001, Nigeria; (P.L.K.); (A.J.L.-M.); (A.O.C.-C.); (N.G.M.); (D.L.C.)
- Nematology Research Unit, Department of Biology, Ghent University, K.L. Ledeganckstraat 35, 9000 Gent, Belgium; (N.V.); (W.B.)
- IITA, Kasarani, Nairobi P.O. Box 30772-00100, Kenya
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Ortolá B, Daròs JA. RNA Interference in Insects: From a Natural Mechanism of Gene Expression Regulation to a Biotechnological Crop Protection Promise. BIOLOGY 2024; 13:137. [PMID: 38534407 DOI: 10.3390/biology13030137] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/14/2023] [Revised: 02/14/2024] [Accepted: 02/19/2024] [Indexed: 03/28/2024]
Abstract
Insect pests rank among the major limiting factors in agricultural production worldwide. In addition to direct effect on crops, some phytophagous insects are efficient vectors for plant disease transmission. Large amounts of conventional insecticides are required to secure food production worldwide, with a high impact on the economy and environment, particularly when beneficial insects are also affected by chemicals that frequently lack the desired specificity. RNA interference (RNAi) is a natural mechanism gene expression regulation and protection against exogenous and endogenous genetic elements present in most eukaryotes, including insects. Molecules of double-stranded RNA (dsRNA) or highly structured RNA are the substrates of cellular enzymes to produce several types of small RNAs (sRNAs), which play a crucial role in targeting sequences for transcriptional or post-transcriptional gene silencing. The relatively simple rules that underlie RNAi regulation, mainly based in Watson-Crick complementarity, have facilitated biotechnological applications based on these cellular mechanisms. This includes the promise of using engineered dsRNA molecules, either endogenously produced in crop plants or exogenously synthesized and applied onto crops, as a new generation of highly specific, sustainable, and environmentally friendly insecticides. Fueled on this expectation, this article reviews current knowledge about the RNAi pathways in insects, and some other applied questions such as production and delivery of recombinant RNA, which are critical to establish RNAi as a reliable technology for insect control in crop plants.
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Affiliation(s)
- Beltrán Ortolá
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas-Universitat Politècnica de València, 46022 Valencia, Spain
| | - José-Antonio Daròs
- Instituto de Biología Molecular y Celular de Plantas, Consejo Superior de Investigaciones Científicas-Universitat Politècnica de València, 46022 Valencia, Spain
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Lucena-Leandro VS, Abreu EFA, Vidal LA, Torres CR, Junqueira CICVF, Dantas J, Albuquerque ÉVS. Current Scenario of Exogenously Induced RNAi for Lepidopteran Agricultural Pest Control: From dsRNA Design to Topical Application. Int J Mol Sci 2022; 23:ijms232415836. [PMID: 36555476 PMCID: PMC9785151 DOI: 10.3390/ijms232415836] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/07/2022] [Revised: 11/24/2022] [Accepted: 11/25/2022] [Indexed: 12/24/2022] Open
Abstract
Invasive insects cost the global economy around USD 70 billion per year. Moreover, increasing agricultural insect pests raise concerns about global food security constraining and infestation rising after climate changes. Current agricultural pest management largely relies on plant breeding-with or without transgenes-and chemical pesticides. Both approaches face serious technological obsolescence in the field due to plant resistance breakdown or development of insecticide resistance. The need for new modes of action (MoA) for managing crop health is growing each year, driven by market demands to reduce economic losses and by consumer demand for phytosanitary measures. The disabling of pest genes through sequence-specific expression silencing is a promising tool in the development of environmentally-friendly and safe biopesticides. The specificity conferred by long dsRNA-base solutions helps minimize effects on off-target genes in the insect pest genome and the target gene in non-target organisms (NTOs). In this review, we summarize the status of gene silencing by RNA interference (RNAi) for agricultural control. More specifically, we focus on the engineering, development and application of gene silencing to control Lepidoptera through non-transforming dsRNA technologies. Despite some delivery and stability drawbacks of topical applications, we reviewed works showing convincing proof-of-concept results that point to innovative solutions. Considerations about the regulation of the ongoing research on dsRNA-based pesticides to produce commercialized products for exogenous application are discussed. Academic and industry initiatives have revealed a worthy effort to control Lepidoptera pests with this new mode of action, which provides more sustainable and reliable technologies for field management. New data on the genomics of this taxon may contribute to a future customized target gene portfolio. As a case study, we illustrate how dsRNA and associated methodologies could be applied to control an important lepidopteran coffee pest.
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Affiliation(s)
| | | | - Leonardo A. Vidal
- Embrapa Recursos Genéticos e Biotecnologia, Brasília 70770-917, DF, Brazil
- Department of Cellular Biology, Institute of Biological Sciences, Campus Darcy Ribeiro, Universidade de Brasília—UnB, Brasília 70910-9002, DF, Brazil
| | - Caroline R. Torres
- Embrapa Recursos Genéticos e Biotecnologia, Brasília 70770-917, DF, Brazil
- Department of Agronomy and Veterinary Medicine, Campus Darcy Ribeiro, Universidade de Brasília—UnB, Brasília 70910-9002, DF, Brazil
| | - Camila I. C. V. F. Junqueira
- Embrapa Recursos Genéticos e Biotecnologia, Brasília 70770-917, DF, Brazil
- Department of Agronomy and Veterinary Medicine, Campus Darcy Ribeiro, Universidade de Brasília—UnB, Brasília 70910-9002, DF, Brazil
| | - Juliana Dantas
- Embrapa Recursos Genéticos e Biotecnologia, Brasília 70770-917, DF, Brazil
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Aparecida Godinho Mendes R, Basso MF, Amora DX, Silva AP, Paes-de-Melo B, Coiti Togawa R, Saliba Albuquerque EV, Lisei-de-Sa ME, Lima Pepino Macedo L, Lourenço-Tessutti IT, Grossi-de-Sa MF. In planta RNAi approach targeting three M. incognita effector genes disturbed the process of infection and reduced plant susceptibility. Exp Parasitol 2022; 238:108246. [PMID: 35460697 DOI: 10.1016/j.exppara.2022.108246] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/15/2020] [Revised: 02/26/2022] [Accepted: 03/13/2022] [Indexed: 11/04/2022]
Abstract
Meloidogyne incognita is the most economically important species of the root-knot nematode complex causing damage to several crops worldwide. During parasitism in host plants, M. incognita secretes several effector proteins to suppress the plant immune system, manipulate the plant cell cycle, and promote parasitism. Several effector proteins have been identified, but their relationship with plant parasitism by M. incognita has not been fully confirmed. Herein, the Minc01696, Minc00344, and Minc00801 putative effector genes were evaluated to assess their importance during soybean and Nicotiana tabacum parasitism by M. incognita. For this study, we used in planta RNAi technology to overexpress dsRNA molecules capable of producing siRNAs that target and downregulate these nematode effector genes. Soybean composite roots and N. tabacum lines were successfully generated, and susceptibility level to M. incognita was evaluated. Consistently, both transgenic soybean roots and transgenic N. tabacum lines carrying the RNAi strategy showed reduced susceptibility to M. incognita. The number of galls per plant and the number of egg masses per plant were reduced by up to 85% in transgenic soybean roots, supported by the downregulation of effector genes in M. incognita during parasitism. Similarly, the number of galls per plant, the number of egg masses per plant, and the nematode reproduction factor were reduced by up to 83% in transgenic N. tabacum lines, which was also supported by the downregulation of the Minc00801 effector gene during parasitism. Therefore, our data indicate that all three effector genes can be a target in the development of new biotechnological tools based on the RNAi strategy in economically important crops for M. incognita control.
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Affiliation(s)
- Reneida Aparecida Godinho Mendes
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, 70297-400, Brazil; Federal University of Brasília, Brasília, DF, 70910-900, Brazil
| | - Marcos Fernando Basso
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, 70297-400, Brazil; National Institute of Science and Technology-INCT PlantStress Biotech-EMBRAPA, Brazil
| | - Deisy Xavier Amora
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, 70297-400, Brazil
| | | | - Bruno Paes-de-Melo
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, 70297-400, Brazil; Federal University of Viçosa, Viçosa, MG, 36570-900, Brazil; National Institute of Science and Technology-INCT PlantStress Biotech-EMBRAPA, Brazil
| | - Roberto Coiti Togawa
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, 70297-400, Brazil; National Institute of Science and Technology-INCT PlantStress Biotech-EMBRAPA, Brazil
| | | | - Maria Eugênia Lisei-de-Sa
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, 70297-400, Brazil; Agricultural Research Company of Minas Gerais, Uberaba, MG, 38060-040, Brazil; National Institute of Science and Technology-INCT PlantStress Biotech-EMBRAPA, Brazil
| | - Leonardo Lima Pepino Macedo
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, 70297-400, Brazil; National Institute of Science and Technology-INCT PlantStress Biotech-EMBRAPA, Brazil
| | - Isabela Tristan Lourenço-Tessutti
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, 70297-400, Brazil; National Institute of Science and Technology-INCT PlantStress Biotech-EMBRAPA, Brazil
| | - Maria Fatima Grossi-de-Sa
- Embrapa Genetic Resources and Biotechnology, Brasília, DF, 70297-400, Brazil; Catholic University of Brasília, Brasília, DF, 71966-700, Brazil; National Institute of Science and Technology-INCT PlantStress Biotech-EMBRAPA, Brazil.
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Silencing of multiple target genes via ingestion of dsRNA and PMRi affects development and survival in Helicoverpa armigera. Sci Rep 2022; 12:10405. [PMID: 35729318 PMCID: PMC9213516 DOI: 10.1038/s41598-022-14667-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/09/2021] [Accepted: 06/10/2022] [Indexed: 11/15/2022] Open
Abstract
RNA interference (RNAi) triggered by exogenous double-stranded RNA (dsRNA) is a powerful tool to knockdown genetic targets crucial for the growth and development of agriculturally important insect pests. Helicoverpa armigera is a pest feeding on more than 30 economically important crops worldwide and a major threat. Resistance to insecticides and Bt toxins has been gradually increasing in the field. RNAi-mediated knockdown of H. armigera genes by producing dsRNAs homologous to genetic targets in bacteria and plants has a high potential for insect management to decrease agricultural loss. The acetylcholinesterase (AChE), ecdysone receptor (EcR) and v-ATPase-A (vAA) genes were selected as genetic targets. Fragments comprising a coding sequence of < 500 bp were cloned into the L4440 vector for dsRNA production in bacteria and in a TRV-VIGS vector in antisense orientation for transient expression of dsRNA in Solanum tuberosum leaves. After ingesting bacterial-expressed dsRNA, the mRNA levels of the target genes were significantly reduced, leading to mortality and abnormal development in larva of H. armigera. Furthermore, the S. tuberosum plants transformed with TRV-VIGS expressing AChE exhibited higher mortality > 68% than the control plants 17%, recorded ten days post-feeding and significant resistance in transgenic (transient) plants was observed. Moreover, larval lethality and molting defects were observed in larva fed on potato plants expressing dsRNA specific to EcR. Analysis of transcript levels by quantitative RT–PCR revealed that larval mortality was attributable to the knockdown of genetic targets by RNAi. The results demonstrated that down-regulation of H. armigera genes involved in ATP hydrolysis, transcriptional stimulation of development genes and neural conduction has aptitude as a bioinsecticide to control H. armigera population sizes and therefore decreases crop loss.
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Qin X, Xue B, Tian H, Fang C, Yu J, Chen C, Xue Q, Jones J, Wang X. An unconventionally secreted effector from the root knot nematode Meloidogyne incognita, Mi-ISC-1, promotes parasitism by disrupting salicylic acid biosynthesis in host plants. MOLECULAR PLANT PATHOLOGY 2022; 23:516-529. [PMID: 34923729 PMCID: PMC8916211 DOI: 10.1111/mpp.13175] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/27/2021] [Revised: 11/24/2021] [Accepted: 11/29/2021] [Indexed: 05/14/2023]
Abstract
Plant-parasitic nematodes need to deliver effectors that suppress host immunity for successful parasitism. We have characterized a novel isochorismatase effector from the root-knot nematode Meloidogyne incognita, named Mi-ISC-1. The Mi-isc-1 gene is expressed in the subventral oesophageal glands and is up-regulated in parasitic-stage juveniles. Tobacco rattle virus-induced gene silencing targeting Mi-isc-1 attenuated M. incognita parasitism. Enzyme activity assays confirmed that Mi-ISC-1 can catalyse hydrolysis of isochorismate into 2,3-dihydro-2,3-dihydroxybenzoate in vitro. Although Mi-ISC-1 lacks a classical signal peptide for secretion at its N-terminus, a yeast invertase secretion assay showed that this protein can be secreted from eukaryotic cells. However, the subcellular localization and plasmolysis assay revealed that the unconventional secretory signal present on the Mi-ISC-1 is not recognized by the plant secretory pathway and that the effector was localized within the cytoplasm of plant cells, but not apoplast, when transiently expressed in Nicotiana benthamiana leaves by agroinfiltration. Ectopic expression of Mi-ISC-1 in N. benthamiana reduced expression of the PR1 gene and levels of salicylic acid (SA), and promoted infection by Phytophthora capsici. The cytoplasmic localization of Mi-ISC-1 is required for its function. Moreover, Mi-ISC-1 suppresses the production of SA following the reconstitution of the de novo SA biosynthesis via the isochorismate pathway in the cytoplasm of N. benthamiana leaves. These results demonstrate that M. incognita deploys a functional isochorismatase that suppresses SA-mediated plant defences by disrupting the isochorismate synthase pathway for SA biosynthesis to promote parasitism.
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Affiliation(s)
- Xin Qin
- Key Laboratory of Integrated Management of Crop Disease and PestsMinistry of EducationNanjing Agricultural UniversityNanjingChina
- Key Laboratory of Plant ImmunityNanjing Agricultural UniversityNanjingChina
| | - Bowen Xue
- Key Laboratory of Integrated Management of Crop Disease and PestsMinistry of EducationNanjing Agricultural UniversityNanjingChina
- Key Laboratory of Plant ImmunityNanjing Agricultural UniversityNanjingChina
| | - Haiyang Tian
- Key Laboratory of Integrated Management of Crop Disease and PestsMinistry of EducationNanjing Agricultural UniversityNanjingChina
- Key Laboratory of Plant ImmunityNanjing Agricultural UniversityNanjingChina
| | - Chenjie Fang
- Key Laboratory of Integrated Management of Crop Disease and PestsMinistry of EducationNanjing Agricultural UniversityNanjingChina
- Key Laboratory of Plant ImmunityNanjing Agricultural UniversityNanjingChina
| | - Jiarong Yu
- Key Laboratory of Integrated Management of Crop Disease and PestsMinistry of EducationNanjing Agricultural UniversityNanjingChina
- Key Laboratory of Plant ImmunityNanjing Agricultural UniversityNanjingChina
| | - Cong Chen
- Key Laboratory of Integrated Management of Crop Disease and PestsMinistry of EducationNanjing Agricultural UniversityNanjingChina
- Key Laboratory of Plant ImmunityNanjing Agricultural UniversityNanjingChina
| | - Qing Xue
- Key Laboratory of Integrated Management of Crop Disease and PestsMinistry of EducationNanjing Agricultural UniversityNanjingChina
- Key Laboratory of Plant ImmunityNanjing Agricultural UniversityNanjingChina
| | - John Jones
- School of BiologyBiomedical Sciences Research ComplexUniversity of St AndrewsSt AndrewsUK
- Cell & Molecular Sciences DepartmentThe James Hutton InstituteDundeeUK
| | - Xuan Wang
- Key Laboratory of Integrated Management of Crop Disease and PestsMinistry of EducationNanjing Agricultural UniversityNanjingChina
- Key Laboratory of Plant ImmunityNanjing Agricultural UniversityNanjingChina
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Joshi I, Kohli D, Pal A, Chaudhury A, Sirohi A, Jain PK. Host delivered-RNAi of effector genes for imparting resistance against root-knot and cyst nematodes in plants. PHYSIOLOGICAL AND MOLECULAR PLANT PATHOLOGY 2022; 118:101802. [DOI: 10.1016/j.pmpp.2022.101802] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/19/2023]
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Guan R, Chu D, Han X, Miao X, Li H. Advances in the Development of Microbial Double-Stranded RNA Production Systems for Application of RNA Interference in Agricultural Pest Control. Front Bioeng Biotechnol 2021; 9:753790. [PMID: 34589476 PMCID: PMC8473835 DOI: 10.3389/fbioe.2021.753790] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/05/2021] [Accepted: 08/31/2021] [Indexed: 11/21/2022] Open
Abstract
RNA interference (RNAi) is a valuable and revolutionary technology that has been widely applied in medicine and agriculture. The application of RNAi in various industries requires large amounts of low-cost double-stranded RNA (dsRNA). Chemical synthesis can only produce short dsRNAs; long dsRNAs need to be synthesized biologically. Several microbial chassis cells, such as Escherichia coli, Saccharomyces cerevisiae, and Bacillus species, have been used for dsRNA synthesis. However, the titer, rate of production, and yield of dsRNA obtained by these microorganism-based strategies is still low. In this review, we summarize advances in microbial dsRNA production, and analyze the merits and faults of different microbial dsRNA production systems. This review provides a guide for dsRNA production system selection. Future development of efficient microbial dsRNA production systems is also discussed.
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Affiliation(s)
- Ruobing Guan
- State Key Laboratory of Wheat and Maize Crop Science/College of Plant Protection, Henan Agricultural University, Zhengzhou, China
| | - Dongdong Chu
- State Key Laboratory of Wheat and Maize Crop Science/College of Plant Protection, Henan Agricultural University, Zhengzhou, China
| | - Xinyi Han
- Key Laboratory of Insect Developmental and Evolutionary Biology, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Innovation Academy for Seed Design, Chinese Academy of Sciences, Shanghai, China
| | - Xuexia Miao
- Key Laboratory of Insect Developmental and Evolutionary Biology, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Innovation Academy for Seed Design, Chinese Academy of Sciences, Shanghai, China
| | - Haichao Li
- State Key Laboratory of Wheat and Maize Crop Science/College of Plant Protection, Henan Agricultural University, Zhengzhou, China.,Key Laboratory of Insect Developmental and Evolutionary Biology, CAS Center for Excellence in Molecular Plant Sciences, Shanghai Institute of Plant Physiology and Ecology, Innovation Academy for Seed Design, Chinese Academy of Sciences, Shanghai, China
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10
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Ji R, Lei J, Chen IW, Sang W, Yang S, Fang J, Zhu-Salzman K. Cytochrome P450s CYP380C6 and CYP380C9 in green peach aphid facilitate its adaptation to indole glucosinolate-mediated plant defense. PEST MANAGEMENT SCIENCE 2021; 77:148-158. [PMID: 32648658 DOI: 10.1002/ps.6002] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/23/2020] [Revised: 06/14/2020] [Accepted: 07/10/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND Overexpressing CIRCADIAN CLOCK ASSOCIATED1 in Arabidopsis thaliana (CCA1-ox) increases indole glucosinolate production and resistance to green peach aphid (Myzus persicae). Little is known of how aphids respond to this group of plant defense compounds or of the underlying molecular mechanism. RESULTS Aphids reared on CCA1-ox for over 40 generations (namely the CCA population) became less susceptible to CCA1-ox than aphids maintained on the wild-type Col-0 (namely the COL population). This elevated tolerance was transgenerational as it remained for at least eight generations after the CCA population was transferred to Col-0. Intriguingly, transcriptome analysis indicated that all differential cytochrome P450 monooxygenase genes (MpCYPs), primarily MpCYP4s, MpCYP380s and MpCYP6s, were more highly expressed in the CCA population. Application of a P450 inhibitor to the CCA population resulted in decreased aphid reproduction on CCA1-ox, which was not observed if aphids were reared on Col-0. When indole glucosinolate biosynthesis in CCA1-ox was blocked using virus-induced gene silencing, the effect of the P450 inhibitor on the CCA population was attenuated, affirming the essential role played by MpCYPs in counteracting the defense mechanism in CCA1-ox that is low or absent in Col-0. Furthermore, we used host-induced gene silencing to identify MpCYP380C6 and MpCYP380C9 that specifically facilitated the CCA population to cope with CCA1-mediated plant defense. Expression profiles revealed their possible contribution to the transgenerational tolerance observed in aphids. CONCLUSION MpCYP380C6 and MpCYP380C9 in aphids play a crucial role in mitigating indole glucosinolate-mediated plant defense, and this effect is transgenerational.
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Affiliation(s)
- Rui Ji
- Jiangsu Key Laboratory for Food and Safety - State Key Laboratory Cultivation Base of Ministry of Science and Technology, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, China
- Department of Entomology, Texas A&M University, College Station, TX, USA
- Institute for Plant Genomics and Biotechnology, Texas A&M University, College Station, TX, USA
| | - Jiaxin Lei
- Department of Entomology, Texas A&M University, College Station, TX, USA
- Institute for Plant Genomics and Biotechnology, Texas A&M University, College Station, TX, USA
| | - Ivy W Chen
- Department of Entomology, Texas A&M University, College Station, TX, USA
- Institute for Plant Genomics and Biotechnology, Texas A&M University, College Station, TX, USA
| | - Wen Sang
- Department of Entomology, Texas A&M University, College Station, TX, USA
- Institute for Plant Genomics and Biotechnology, Texas A&M University, College Station, TX, USA
| | - Shiying Yang
- Jiangsu Key Laboratory for Food and Safety - State Key Laboratory Cultivation Base of Ministry of Science and Technology, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, China
| | - Jichao Fang
- Jiangsu Key Laboratory for Food and Safety - State Key Laboratory Cultivation Base of Ministry of Science and Technology, Institute of Plant Protection, Jiangsu Academy of Agricultural Sciences, Nanjing, China
- Jiangsu Collaborative Innovation Center of Regional Modern Agriculture & Environmental Protection, Huaiyin Normal University, Huai'an, China
| | - Keyan Zhu-Salzman
- Department of Entomology, Texas A&M University, College Station, TX, USA
- Institute for Plant Genomics and Biotechnology, Texas A&M University, College Station, TX, USA
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11
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Basso MF, Lourenço-Tessutti IT, Mendes RAG, Pinto CEM, Bournaud C, Gillet FX, Togawa RC, de Macedo LLP, de Almeida Engler J, Grossi-de-Sa MF. MiDaf16-like and MiSkn1-like gene families are reliable targets to develop biotechnological tools for the control and management of Meloidogyne incognita. Sci Rep 2020; 10:6991. [PMID: 32332904 PMCID: PMC7181638 DOI: 10.1038/s41598-020-63968-8] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/29/2019] [Accepted: 03/26/2020] [Indexed: 12/22/2022] Open
Abstract
Meloidogyne incognita is a plant-parasitic root-knot nematode (RKN, PPN) responsible for causing damage to several crops worldwide. In Caenorhabditis elegans, the DAF-16 and SKN-1 transcription factors (TFs) orchestrate aging, longevity, and defense responses to several stresses. Here, we report that MiDaf16-like1 and MiSkn1-like1, which are orthologous to DAF-16 and SKN-1 in C. elegans, and some of their targets, are modulated in M. incognita J2 during oxidative stress or plant parasitism. We used RNAi technology for the stable production of siRNAs in planta to downregulate the MiDaf16-like1 and MiSkn1-like1 genes of M. incognita during host plant parasitism. Arabidopsis thaliana and Nicotiana tabacum overexpressing a hairpin-derived dsRNA targeting these genes individually (single-gene silencing) or simultaneously (double-gene silencing) were generated. T2 plants were challenged with M. incognita and the number of eggs, galls, and J2, and the nematode reproduction factor (NRF) were evaluated. Our data indicate that MiDaf16-like1, MiSkn1-like1 and some genes from their networks are modulated in M. incognita J2 during oxidative stress or plant parasitism. Transgenic A. thaliana and N. tabacum plants with single- or double-gene silencing showed significant reductions in the numbers of eggs, J2, and galls, and in NRF. Additionally, the double-gene silencing plants had the highest resistance level. Gene expression assays confirmed the downregulation of the MiDaf16-like1 and MiSkn1-like1 TFs and defense genes in their networks during nematode parasitism in the transgenic plants. All these findings demonstrate that these two TFs are potential targets for the development of biotechnological tools for nematode control and management in economically important crops.
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Affiliation(s)
| | | | - Reneida Aparecida Godinho Mendes
- Embrapa Genetic Resources and Biotechnology, Brasília-DF, 70297-400, Brazil
- Federal University of Brasília, Brasília-DF, 70910-900, Brazil
| | - Clidia Eduarda Moreira Pinto
- Embrapa Genetic Resources and Biotechnology, Brasília-DF, 70297-400, Brazil
- Federal University of Brasília, Brasília-DF, 70910-900, Brazil
| | - Caroline Bournaud
- Université de Grenoble Alpes, CNRS, CEA, INRA, 38054, Grenoble, Cedex 9, France
| | | | | | | | | | - Maria Fatima Grossi-de-Sa
- Embrapa Genetic Resources and Biotechnology, Brasília-DF, 70297-400, Brazil.
- Catholic University of Brasília, Brasília-DF, 71966-700, Brazil.
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12
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Cox DE, Dyer S, Weir R, Cheseto X, Sturrock M, Coyne D, Torto B, Maule AG, Dalzell JJ. ABC transporter genes ABC-C6 and ABC-G33 alter plant-microbe-parasite interactions in the rhizosphere. Sci Rep 2019; 9:19899. [PMID: 31882903 PMCID: PMC6934816 DOI: 10.1038/s41598-019-56493-w] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/08/2019] [Accepted: 12/08/2019] [Indexed: 11/20/2022] Open
Abstract
Plants are master regulators of rhizosphere ecology, secreting a complex mixture of compounds into the soil, collectively termed plant root exudate. Root exudate composition is highly dynamic and functional, mediating economically important interactions between plants and a wide range of soil organisms. Currently we know very little about the molecular basis of root exudate composition, which is a key hurdle to functional exploitation of root exudates for crop improvement. Root expressed transporters modulate exudate composition and could be manipulated to develop beneficial plant root exudate traits. Using Virus Induced Gene silencing (VIGS), we demonstrate that knockdown of two root-expressed ABC transporter genes in tomato cv. Moneymaker, ABC-C6 and ABC-G33, alters the composition of semi-volatile compounds in collected root exudates. Root exudate chemotaxis assays demonstrate that knockdown of each transporter gene triggers the repulsion of economically relevant Meloidogyne and Globodera spp. plant parasitic nematodes, which are attracted to control treatment root exudates. Knockdown of ABC-C6 inhibits egg hatching of Meloidogyne and Globodera spp., relative to controls. Knockdown of ABC-G33 has no impact on egg hatching of Meloidogyne spp. but has a substantial inhibitory impact on egg hatching of G. pallida. ABC-C6 knockdown has no impact on the attraction of the plant pathogen Agrobacterium tumefaciens, or the plant growth promoting Bacillus subtilis, relative to controls. Silencing ABC-G33 induces a statistically significant reduction in attraction of B. subtilis, with no impact on attraction of A. tumefaciens. By inoculating selected differentially exuded compounds into control root exudates, we demonstrate that hexadecaonic acid and pentadecane are biologically relevant parasite repellents. ABC-C6 represents a promising target for breeding or biotechnology intervention strategies as gene knockdown leads to the repulsion of economically important plant parasites and retains attraction of the beneficial rhizobacterium B. subtilis. This study exposes the link between ABC transporters, root exudate composition, and ex planta interactions with agriculturally and economically relevant rhizosphere organisms, paving the way for new approaches to rhizosphere engineering and crop protection.
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Affiliation(s)
- Deborah Elizabeth Cox
- School of Biological Sciences, Institute for Global Food Security, Queen's University Belfast, Belfast, UK
| | - Steven Dyer
- School of Biological Sciences, Institute for Global Food Security, Queen's University Belfast, Belfast, UK
| | - Ryan Weir
- School of Biological Sciences, Institute for Global Food Security, Queen's University Belfast, Belfast, UK
| | - Xavier Cheseto
- The International Center of Insect Physiology and Ecology, Nairobi, Kenya
| | - Matthew Sturrock
- School of Biological Sciences, Institute for Global Food Security, Queen's University Belfast, Belfast, UK
| | - Danny Coyne
- The International Institute for Tropical Agriculture, Nairobi, Kenya
| | - Baldwyn Torto
- The International Center of Insect Physiology and Ecology, Nairobi, Kenya
| | - Aaron G Maule
- School of Biological Sciences, Institute for Global Food Security, Queen's University Belfast, Belfast, UK
| | - Johnathan J Dalzell
- School of Biological Sciences, Institute for Global Food Security, Queen's University Belfast, Belfast, UK.
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13
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Marmonier A, Perfus-Barbeoch L, Rancurel C, Boissinot S, Favery B, Demangeat G, Brault V. In Vitro Acquisition of Specific Small Interfering RNAs Inhibits the Expression of Some Target Genes in the Plant Ectoparasite Xiphinema index. Int J Mol Sci 2019; 20:E3266. [PMID: 31277202 PMCID: PMC6651894 DOI: 10.3390/ijms20133266] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/20/2019] [Revised: 06/28/2019] [Accepted: 07/01/2019] [Indexed: 12/24/2022] Open
Abstract
Xiphinema index is an important plant parasitic nematode that induces direct damages and specifically transmits the Grapevine fanleaf virus, which is particularly harmful for grapevines. Genomic resources of this nematode species are still limited and no functional gene validation technology is available. RNA interference (RNAi) is a powerful technology to study gene function and here we describe the application of RNAi on several genes in X. index. Soaking the nematodes for 48 h in a suspension containing specific small interfering RNAs resulted in a partial inhibition of the accumulation of some targeted mRNA. However, low reproducible silencing efficiency was observed which could arise from X. index silencing pathway deficiencies. Indeed, essential accustomed proteins for these pathways were not found in the X. index proteome predicted from transcriptomic data. The most reproducible silencing effect was obtained when targeting the piccolo gene potentially involved in endo-exocytosis of synaptic molecules. This represents the first report of gene silencing in a nematode belonging to the Longidoridae family.
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Affiliation(s)
| | | | - Corinne Rancurel
- ISA, INRA, Université Côte d'Azur, CNRS, 06900 Sophia-Antipolis, France
| | | | - Bruno Favery
- ISA, INRA, Université Côte d'Azur, CNRS, 06900 Sophia-Antipolis, France
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14
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Shi Q, Mao Z, Zhang X, Zhang X, Wang Y, Ling J, Lin R, Li D, Kang X, Sun W, Xie B. A Meloidogyne incognita effector MiISE5 suppresses programmed cell death to promote parasitism in host plant. Sci Rep 2018; 8:7256. [PMID: 29740007 PMCID: PMC5940819 DOI: 10.1038/s41598-018-24999-4] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2017] [Accepted: 04/13/2018] [Indexed: 11/09/2022] Open
Abstract
Root-knot nematodes (RKNs) are highly specialized parasites that interact with their host plants using a range of strategies. The esophageal glands are the main places where nematodes synthesize effector proteins, which play central roles in successful invasion. The Meloidogyne incognita effector MiISE5 is exclusively expressed within the subventral esophageal cells and is upregulated during early parasitic stages. In this study, we show that MiISE5 can be secreted to barley cells through infectious hyphae of Magnaporthe oryzae. Transgenic Arabidopsis plants expressing MiISE5 became significantly more susceptible to M. incognita. Inversely, the tobacco rattle virus (TRV)-mediated silence of MiISE5 decreased nematode parasitism. Moreover, transient expression of MiISE5 suppressed cell death caused by Burkholderia glumae in Nicotiana benthamiana. Based on transcriptome analysis of MiISE5 transgenic sample and the wild-type (WT) sample, we obtained 261 DEGs, and the results of GO and KEGG enrichment analysis indicate that MiISE5 can interfere with various metabolic and signaling pathways, especially the JA signaling pathway, to facilitate nematode parasitism. Results from the present study suggest that MiISE5 plays an important role during the early stages of parasitism and provides evidence to decipher the molecular mechanisms underlying the manipulation of host immune defense responses by M. incognita.
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Affiliation(s)
- Qianqian Shi
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
- Department of Plant Pathology and the Ministry of Agriculture Key Laboratory for Plant Pathology, China Agricultural University, Beijing, 100193, China
| | - Zhenchuan Mao
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Xi Zhang
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
- College of Life Science, Beijing Normal University, Beijing, 100875, China
| | - Xiaoping Zhang
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Yunsheng Wang
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Jian Ling
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Runmao Lin
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
- College of Life Science, Beijing Normal University, Beijing, 100875, China
| | - Denghui Li
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China
| | - Xincong Kang
- Horticulture and Landscape College, Hunan Agricultural University, Changsha, 410128, China
| | - Wenxian Sun
- Department of Plant Pathology and the Ministry of Agriculture Key Laboratory for Plant Pathology, China Agricultural University, Beijing, 100193, China
| | - Bingyan Xie
- Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing, 100081, China.
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15
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Khanal C, McGawley EC, Overstreet C, Stetina SR. The Elusive Search for Reniform Nematode Resistance in Cotton. PHYTOPATHOLOGY 2018; 108:532-541. [PMID: 29116883 DOI: 10.1094/phyto-09-17-0320-rvw] [Citation(s) in RCA: 18] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/07/2023]
Abstract
The reniform nematode (Rotylenchulus reniformis Linford and Oliveira) has emerged as the most important plant-parasitic nematode of cotton in the United States cotton belt. Success in the development of reniform nematode-resistant upland cotton cultivars (Gossypium hirsutum L.) has not been realized despite over three decades of breeding efforts. Research approaches ranging from conventional breeding to triple species hybrids to marker-assisted selection have been employed to introgress reniform nematode resistance from other species of cotton into upland cultivars. Reniform nematode-resistant breeding lines derived from G. longicalyx were developed in 2007. However, these breeding lines displayed stunting symptoms and a hypersensitive response to reniform nematode infection. Subsequent breeding efforts focused on G. barbadense, G. aridum, G. armoreanum, and other species that have a high level of resistance to reniform nematode. Marker-assisted selection has greatly improved screening of reniform nematode-resistant lines. The use of advanced molecular techniques such as CRISPER-Cas9 systems and alternative ways such as delivery of suitable "cry" proteins and specific double-stranded RNA to nematodes will assist in developing resistant cultivars of cotton. In spite of the efforts of cotton breeders and nematologists, successes are limited only to the development of reniform nematode-resistant breeding lines. In this article, we provide an overview of the approaches employed to develop reniform nematode-resistant upland cotton cultivars in the past, progress to date, major obstacles, and some promising future research activity.
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Affiliation(s)
- Churamani Khanal
- First, second, and third authors: Louisiana State University AgCenter, Department of Plant Pathology and Crop Physiology, Baton Rouge 70803; and fourth author: United States Department of Agriculture-Agricultural Research Service, Crop Genetics Research Unit, P.O. Box 345, Stoneville, MS 38776
| | - Edward C McGawley
- First, second, and third authors: Louisiana State University AgCenter, Department of Plant Pathology and Crop Physiology, Baton Rouge 70803; and fourth author: United States Department of Agriculture-Agricultural Research Service, Crop Genetics Research Unit, P.O. Box 345, Stoneville, MS 38776
| | - Charles Overstreet
- First, second, and third authors: Louisiana State University AgCenter, Department of Plant Pathology and Crop Physiology, Baton Rouge 70803; and fourth author: United States Department of Agriculture-Agricultural Research Service, Crop Genetics Research Unit, P.O. Box 345, Stoneville, MS 38776
| | - Salliana R Stetina
- First, second, and third authors: Louisiana State University AgCenter, Department of Plant Pathology and Crop Physiology, Baton Rouge 70803; and fourth author: United States Department of Agriculture-Agricultural Research Service, Crop Genetics Research Unit, P.O. Box 345, Stoneville, MS 38776
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16
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Cui M, Li Z. Downregulation of YAP inhibits proliferation and induces apoptosis in Eca-109 cells. Exp Ther Med 2017; 15:1048-1052. [PMID: 29403552 DOI: 10.3892/etm.2017.5492] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/23/2017] [Accepted: 07/11/2017] [Indexed: 12/14/2022] Open
Abstract
A previous study reported that Yes-associated protein (YAP) gene was overexpressed in esophageal squamous cell carcinoma (ESCC); however, the exact role of YAP in ESCC remains largely unclear. The present study aimed to investigate the effects of YAP inhibition on ESCC. In order to investigate the exact role of YAP in ESCC cells, a stable YAP low-expression ESCC cell line was established using YAP-small interfering RNA. MTT assay was performed to examine the cell proliferation ability, while flow cytometry were used to detect the cell apoptosis and cell cycle distribution. In addition, reverse transcription-quantitative polymerase chain reaction and western blot analysis were applied for mRNA and protein level detection, respectively. The results suggested that YAP gene inhibition significantly repressed the ECA-109 cell proliferation and induced cell apoptosis, whereas this inhibition had no significant effects on cell cycle. Furthermore, the expression levels of cell apoptosis-associated proteins were determined in the current study, and the data demonstrated that the B-cell lymphoma 2 (Bcl-2)/Bcl-2-associated X protein ratio and phosphorylated extracellular signal-regulated kinase expression were significantly reduced, while the p53 and caspase 3 levels were notably increased in YAP gene-inhibited ECA-109 cells. In conclusion, the current study revealed that YAP gene inhibition suppresses the proliferation and induces apoptosis in ECA-109 cells, indicating that the YAP gene serves as an oncogene in ESCC.
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Affiliation(s)
- Mu Cui
- School of Nursing, Xi'an Medical University, Xi'an, Shaanxi 710021, P.R. China
| | - Zhen Li
- School of Nursing, Xi'an Medical University, Xi'an, Shaanxi 710021, P.R. China
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17
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Kochetov AV, Shumny VK. Transgenic plants as genetic models for studying functions of plant genes. ACTA ACUST UNITED AC 2017. [DOI: 10.1134/s2079059717040050] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
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18
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Kolliopoulou A, Taning CNT, Smagghe G, Swevers L. Viral Delivery of dsRNA for Control of Insect Agricultural Pests and Vectors of Human Disease: Prospects and Challenges. Front Physiol 2017; 8:399. [PMID: 28659820 PMCID: PMC5469917 DOI: 10.3389/fphys.2017.00399] [Citation(s) in RCA: 53] [Impact Index Per Article: 7.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/29/2017] [Accepted: 05/26/2017] [Indexed: 12/12/2022] Open
Abstract
RNAi is applied as a new and safe method for pest control in agriculture but efficiency and specificity of delivery of dsRNA trigger remains a critical issue. Various agents have been proposed to augment dsRNA delivery, such as engineered micro-organisms and synthetic nanoparticles, but the use of viruses has received relatively little attention. Here we present a critical view of the potential of the use of recombinant viruses for efficient and specific delivery of dsRNA. First of all, it requires the availability of plasmid-based reverse genetics systems for virus production, of which an overview is presented. For RNA viruses, their application seems to be straightforward since dsRNA is produced as an intermediate molecule during viral replication, but DNA viruses also have potential through the production of RNA hairpins after transcription. However, application of recombinant virus for dsRNA delivery may not be straightforward in many cases, since viruses can encode RNAi suppressors, and virus-induced silencing effects can be determined by the properties of the encoded RNAi suppressor. An alternative is virus-like particles that retain the efficiency and specificity determinants of natural virions but have encapsidated non-replicating RNA. Finally, the use of viruses raises important safety issues which need to be addressed before application can proceed.
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Affiliation(s)
- Anna Kolliopoulou
- Insect Molecular Genetics and Biotechnology Research Group, Institute of Biosciences and Applications, NCSR “Demokritos,”Aghia Paraskevi, Greece
| | - Clauvis N. T. Taning
- Laboratory of Agrozoology, Department of Crop Protection, Faculty of Bioscience Engineering, Ghent UniversityGhent, Belgium
| | - Guy Smagghe
- Laboratory of Agrozoology, Department of Crop Protection, Faculty of Bioscience Engineering, Ghent UniversityGhent, Belgium
| | - Luc Swevers
- Insect Molecular Genetics and Biotechnology Research Group, Institute of Biosciences and Applications, NCSR “Demokritos,”Aghia Paraskevi, Greece
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19
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Zheng N, Song Z, Liu Y, Yin L, Cheng J. Gene delivery into isolated Arabidopsis thaliana protoplasts and intact leaves using cationic, α-helical polypeptide. Front Chem Sci Eng 2017. [DOI: 10.1007/s11705-017-1612-8] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022]
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20
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Guiguet A, Dubreuil G, Harris MO, Appel HM, Schultz JC, Pereira MH, Giron D. Shared weapons of blood- and plant-feeding insects: Surprising commonalities for manipulating hosts. JOURNAL OF INSECT PHYSIOLOGY 2016; 84:4-21. [PMID: 26705897 DOI: 10.1016/j.jinsphys.2015.12.006] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2015] [Revised: 12/14/2015] [Accepted: 12/15/2015] [Indexed: 05/04/2023]
Abstract
Insects that reprogram host plants during colonization remind us that the insect side of plant-insect story is just as interesting as the plant side. Insect effectors secreted by the salivary glands play an important role in plant reprogramming. Recent discoveries point to large numbers of salivary effectors being produced by a single herbivore species. Since genetic and functional characterization of effectors is an arduous task, narrowing the field of candidates is useful. We present ideas about types and functions of effectors from research on blood-feeding parasites and their mammalian hosts. Because of their importance for human health, blood-feeding parasites have more tools from genomics and other - omics than plant-feeding parasites. Four themes have emerged: (1) mechanical damage resulting from attack by blood-feeding parasites triggers "early danger signals" in mammalian hosts, which are mediated by eATP, calcium, and hydrogen peroxide, (2) mammalian hosts need to modulate their immune responses to the three "early danger signals" and use apyrases, calreticulins, and peroxiredoxins, respectively, to achieve this, (3) blood-feeding parasites, like their mammalian hosts, rely on some of the same "early danger signals" and modulate their immune responses using the same proteins, and (4) blood-feeding parasites deploy apyrases, calreticulins, and peroxiredoxins in their saliva to manipulate the "danger signals" of their mammalian hosts. We review emerging evidence that plant-feeding insects also interfere with "early danger signals" of their hosts by deploying apyrases, calreticulins and peroxiredoxins in saliva. Given emerging links between these molecules, and plant growth and defense, we propose that these effectors interfere with phytohormone signaling, and therefore have a special importance for gall-inducing and leaf-mining insects, which manipulate host-plants to create better food and shelter.
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Affiliation(s)
- Antoine Guiguet
- Institut de Recherche sur la Biologie de l'Insecte, UMR 7261 CNRS - Université François-Rabelais de Tours, 37200 Tours, France; Département de Biologie, École Normale Supérieure de Lyon, 69007 Lyon, France
| | - Géraldine Dubreuil
- Institut de Recherche sur la Biologie de l'Insecte, UMR 7261 CNRS - Université François-Rabelais de Tours, 37200 Tours, France
| | - Marion O Harris
- Department of Entomology, North Dakota State University, Fargo, ND 58105, USA; Le Studium Loire Valley Institute for Advanced Studies, 45000 Orléans, France
| | - Heidi M Appel
- Life Science Center, University of Missouri, Columbia, MO 65211, USA
| | - Jack C Schultz
- Life Science Center, University of Missouri, Columbia, MO 65211, USA
| | - Marcos H Pereira
- Le Studium Loire Valley Institute for Advanced Studies, 45000 Orléans, France; Laboratório de Fisiologia de Insectos Hematófagos, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil
| | - David Giron
- Institut de Recherche sur la Biologie de l'Insecte, UMR 7261 CNRS - Université François-Rabelais de Tours, 37200 Tours, France.
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21
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Strategies for altering plant traits using virus-induced gene silencing technologies. Methods Mol Biol 2015; 1287:25-41. [PMID: 25740354 DOI: 10.1007/978-1-4939-2453-0_2] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/21/2023]
Abstract
The rapid progress in genome sequencing and transcriptome analysis in model and crop plants has made possible the identification of a vast number of genes potentially associated with economically important complex traits. The ultimate goal is to assign functions to these genes by using forward and reverse genetic screens. Plant viruses have been developed for virus-induced gene silencing (VIGS) to generate rapid gene knockdown phenotypes in numerous plant species. To fulfill its potential for high-throughput phenomics, it is of prime importance to ensure that parameters conditioning the VIGS response, i.e., plant-virus interactions and associated loss-of-function screens, are "fit for purpose" and optimized to unequivocally conclude the role of a gene of interest in relation to a given trait. This chapter will review and discuss the different strategies used for the development of VIGS-based phenomics in model and crop species.
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22
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Li Y, Wang K, Xie H, Wang YT, Wang DW, Xu CL, Huang X, Wang DS. A Nematode Calreticulin, Rs-CRT, Is a Key Effector in Reproduction and Pathogenicity of Radopholus similis. PLoS One 2015; 10:e0129351. [PMID: 26061142 PMCID: PMC4465493 DOI: 10.1371/journal.pone.0129351] [Citation(s) in RCA: 20] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/04/2015] [Accepted: 05/08/2015] [Indexed: 11/18/2022] Open
Abstract
Radopholus similis is a migratory plant-parasitic nematode that causes severe damage to many agricultural and horticultural crops. Calreticulin (CRT) is a Ca2+-binding multifunctional protein that plays key roles in the parasitism, immune evasion, reproduction and pathogenesis of many animal parasites and plant nematodes. Therefore, CRT is a promising target for controlling R. similis. In this study, we obtained the full-length sequence of the CRT gene from R. similis (Rs-crt), which is 1,527-bp long and includes a 1,206-bp ORF that encodes 401 amino acids. Rs-CRT and Mi-CRT from Meloidogyne incognita showed the highest similarity and were grouped on the same branch of the phylogenetic tree. Rs-crt is a multi-copy gene that is expressed in the oesophageal glands and gonads of females, the gonads of males, the intestines of juveniles and the eggs of R. similis. The highest Rs-crt expression was detected in females, followed by juveniles, eggs and males. The reproductive capability and pathogenicity of R. similis were significantly reduced after treatment with Rs-crt dsRNA for 36 h. Using plant-mediated RNAi, we confirmed that Rs-crt expression was significantly inhibited in the nematodes, and resistance to R. similis was significantly improved in transgenic tomato plants. Plant-mediated RNAi-induced silencing of Rs-crt could be effectively transmitted to the F2 generation of R. similis; however, the silencing effect of Rs-crt induced by in vitro RNAi was no longer detectable in F1 and F2 nematodes. Thus, Rs-crt is essential for the reproduction and pathogenicity of R. similis.
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Affiliation(s)
- Yu Li
- Laboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology, South China Agricultural University, Guangzhou, Guangdong, 510642, China
| | - Ke Wang
- Laboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology, South China Agricultural University, Guangzhou, Guangdong, 510642, China
| | - Hui Xie
- Laboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology, South China Agricultural University, Guangzhou, Guangdong, 510642, China
| | - Yan-Tao Wang
- Laboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology, South China Agricultural University, Guangzhou, Guangdong, 510642, China
- Paulownia Research and Development Center of State Forestry Administration, Zhengzhou, Henan, 450003, China
| | - Dong-Wei Wang
- Laboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology, South China Agricultural University, Guangzhou, Guangdong, 510642, China
| | - Chun-Lin Xu
- Laboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology, South China Agricultural University, Guangzhou, Guangdong, 510642, China
| | - Xin Huang
- Laboratory of Plant Nematology and Research Center of Nematodes of Plant Quarantine, Department of Plant Pathology, South China Agricultural University, Guangzhou, Guangdong, 510642, China
| | - De-Sen Wang
- Department of Entomology, Rutgers University, New Brunswick, New Jersey, 08901, United States of America
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Wylie SJ, Zhang C, Long V, Roossinck MJ, Koh SH, Jones MGK, Iqbal S, Li H. Differential responses to virus challenge of laboratory and wild accessions of australian species of nicotiana, and comparative analysis of RDR1 gene sequences. PLoS One 2015; 10:e0121787. [PMID: 25822508 PMCID: PMC4379023 DOI: 10.1371/journal.pone.0121787] [Citation(s) in RCA: 28] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2014] [Accepted: 02/04/2015] [Indexed: 01/18/2023] Open
Abstract
Nicotiana benthamiana is a model plant utilised internationally in plant virology because of its apparent hyper-susceptibility to virus infection. Previously, others showed that all laboratory accessions of N. benthamiana have a very narrow genetic basis, probably originating from a single source. It is unknown if responses to virus infection exhibited by the laboratory accession are typical of the species as a whole. To test this, 23 accessions of N. benthamiana were collected from wild populations and challenged with one to four viruses. Additionally, accessions of 21 other Nicotiana species and subspecies from Australia, one from Peru and one from Namibia were tested for susceptibility to the viruses, and for the presence of a mutated RNA-dependent RNA polymerase I allele (Nb-RDR1m) described previously from a laboratory accession of N. benthamiana. All Australian Nicotiana accessions tested were susceptible to virus infections, although there was symptom variability within and between species. The most striking difference was that plants of a laboratory accession of N. benthamiana (RA-4) exhibited hypersensitivity to Yellow tailflower mild mottle tobamovirus infection and died, whereas plants of wild N. benthamiana accessions responded with non-necrotic symptoms. Plants of certain N. occidentalis accessions also exhibited initial hypersensitivity to Yellow tailflower mild mottle virus resembling that of N. benthamiana RA-4 plants, but later recovered. The mutant Nb-RDR1m allele was identified from N. benthamiana RA-4 but not from any of 51 other Nicotiana accessions, including wild accessions of N. benthamiana, demonstrating that the accession of N. benthamiana used widely in laboratories is unusual.
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Affiliation(s)
- Stephen J. Wylie
- Plant Biotechnology Research Group-Virology, Western Australian State Agricultural Biotechnology Centre, School of Veterinary and Life Sciences, Murdoch University, Perth, Western Australia, Australia
- Plant Biotechnology Research Group—Pests, Western Australian State Agricultural Biotechnology Centre, School of Veterinary and Life Sciences, Murdoch University, Perth, Western Australia, Australia
| | - Chao Zhang
- College of Plant Protection, Northwest Agriculture and Forestry University, Yangling, Shaanxi Province, China
| | - Vicki Long
- Astron Environmental Services, Karratha, Western Australia, Australia
| | - Marilyn J. Roossinck
- Plant Biotechnology Research Group-Virology, Western Australian State Agricultural Biotechnology Centre, School of Veterinary and Life Sciences, Murdoch University, Perth, Western Australia, Australia
- Departments of Plant Pathology and Environmental Microbiology, and Biology, Pennsylvania State University, University Park, Pennsylvania, United States of America
| | - Shu Hui Koh
- Plant Biotechnology Research Group-Virology, Western Australian State Agricultural Biotechnology Centre, School of Veterinary and Life Sciences, Murdoch University, Perth, Western Australia, Australia
- Plant Biotechnology Research Group—Pests, Western Australian State Agricultural Biotechnology Centre, School of Veterinary and Life Sciences, Murdoch University, Perth, Western Australia, Australia
| | - Michael G. K. Jones
- Plant Biotechnology Research Group-Virology, Western Australian State Agricultural Biotechnology Centre, School of Veterinary and Life Sciences, Murdoch University, Perth, Western Australia, Australia
- Plant Biotechnology Research Group—Pests, Western Australian State Agricultural Biotechnology Centre, School of Veterinary and Life Sciences, Murdoch University, Perth, Western Australia, Australia
| | - Sadia Iqbal
- Plant Biotechnology Research Group—Pests, Western Australian State Agricultural Biotechnology Centre, School of Veterinary and Life Sciences, Murdoch University, Perth, Western Australia, Australia
| | - Hua Li
- Plant Biotechnology Research Group-Virology, Western Australian State Agricultural Biotechnology Centre, School of Veterinary and Life Sciences, Murdoch University, Perth, Western Australia, Australia
- Plant Biotechnology Research Group—Pests, Western Australian State Agricultural Biotechnology Centre, School of Veterinary and Life Sciences, Murdoch University, Perth, Western Australia, Australia
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Hu Z, Parekh U, Maruta N, Trusov Y, Botella JR. Down-regulation of Fusarium oxysporum endogenous genes by Host-Delivered RNA interference enhances disease resistance. Front Chem 2015; 3:1. [PMID: 25654075 PMCID: PMC4299518 DOI: 10.3389/fchem.2015.00001] [Citation(s) in RCA: 44] [Impact Index Per Article: 4.9] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/14/2014] [Accepted: 01/01/2015] [Indexed: 01/17/2023] Open
Abstract
Fusarium oxysporum is a devastating pathogen causing extensive yield losses in a variety of crops and development of sustainable, environmentally friendly methods to improve crop resistance is crucial. We have used Host-Delivered RNA interference (HD-RNAi) technology to partially silence three different genes (FOW2, FRP1, and OPR) in the hemi-biotrophic fungus F. oxysporum f. sp. conglutinans. Expression of double stranded RNA (dsRNA) molecules targeting fungal pathogen genes was achieved in a number of transgenic Arabidopsis lines. F. oxysporum infecting the transgenic lines displayed substantially reduced mRNA levels on all three targeted genes, with an average of 75, 83, and 72% reduction for FOW2, FRP1, and OPR, respectively. The silencing of pathogen genes had a clear positive effect on the ability of the transgenic lines to fight infection. All transgenic lines displayed enhanced resistance to F. oxysporum with delayed disease symptom development, especially FRP1 and OPR lines. Survival rates after fungal infection were higher in the transgenic lines compared to control wild type plants which consistently showed survival rates of 10%, with FOW2 lines showing 25% survival; FRP1 lines 30-50% survival and OPR between 45 and 70% survival. The down-regulation effect was specific for the targeted genes without unintended effects in related genes. In addition to producing resistant crops, HD-RNAi can provide a useful tool to rapidly screen candidate fungal pathogenicity genes without the need to produce fungal knockout mutants.
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Affiliation(s)
- Zongli Hu
- Plant Genetic Engineering Laboratory, School of Agriculture and Food Sciences, University of QueenslandBrisbane, QLD, Australia
- Bioengineering College, Chongqing UniversityChongqing, China
| | - Urvi Parekh
- Plant Genetic Engineering Laboratory, School of Agriculture and Food Sciences, University of QueenslandBrisbane, QLD, Australia
| | - Natsumi Maruta
- Plant Genetic Engineering Laboratory, School of Agriculture and Food Sciences, University of QueenslandBrisbane, QLD, Australia
| | - Yuri Trusov
- Plant Genetic Engineering Laboratory, School of Agriculture and Food Sciences, University of QueenslandBrisbane, QLD, Australia
| | - Jose R. Botella
- Plant Genetic Engineering Laboratory, School of Agriculture and Food Sciences, University of QueenslandBrisbane, QLD, Australia
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25
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Xu ST, Guo C, Ding X, Fan WJ, Zhang FH, Xu WL, Ma YC. Role of osteopontin in the regulation of human bladder cancer proliferation and migration in T24 cells. Mol Med Rep 2015; 11:3701-7. [PMID: 25591934 DOI: 10.3892/mmr.2015.3202] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/19/2014] [Accepted: 11/19/2014] [Indexed: 11/05/2022] Open
Abstract
Osteopontin (OPN), a secreted acid glycoprotein with a variety of functions, promotes tumor proliferation, differentiation, invasion and metastasis. The aim of the current study was to investigate whether OPN may serve as a potential therapeutic target for human bladder cancer. RNA interference (RNAi) was performed to downregulate the expression of the OPN gene in T24 human bladder cancer cells. The mRNA and protein expression levels of OPN following RNAi were determined using reverse transcription‑quantitative polymerase chain reaction and western blot analysis, respectively. In addition, the cell cycle progression, apoptosis and proliferation were investigated using by flow cytometric analysis and MTT assay. The cell invasion ability was measured using a Matrigel transwell assay. The mRNA and protein expression levels of OPN were found to be significantly downregulated following RNAi. The proliferation and invasion of T24 cells were significantly inhibited in vitro. In conclusion, RNAi‑targeting OPN may inhibit the proliferation, invasion and tumorigenicity of human bladder cancer cells. Therefore, OPN may serve as a potential therapeutic target for human bladder cancer.
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Affiliation(s)
- Song-Tao Xu
- Department of Clinical Medicine, Luohe Medical College, Luohe, Henan 462002, P.R. China
| | - Chun Guo
- Department of Clinical Medicine, Luohe Medical College, Luohe, Henan 462002, P.R. China
| | - Xiang Ding
- Department of Urology, The First Affiliated Hospital of Soochow University, Suzhou, Jiangsu 215006, P.R. China
| | - Wen-Juan Fan
- Department of Clinical Medicine, Luohe Medical College, Luohe, Henan 462002, P.R. China
| | - Fu-Hua Zhang
- Department of Clinical Medicine, Luohe Medical College, Luohe, Henan 462002, P.R. China
| | - Wan-Ling Xu
- Department of Clinical Medicine, Luohe Medical College, Luohe, Henan 462002, P.R. China
| | - Yong-Chao Ma
- Department of Clinical Medicine, Luohe Medical College, Luohe, Henan 462002, P.R. China
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Molecular characterization of putative parasitism genes in the plant-parasitic nematode Meloidogyne hispanica. J Helminthol 2014; 90:28-38. [PMID: 25319213 DOI: 10.1017/s0022149x1400073x] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Abstract
Meloidogyne hispanica (Mhi) is a difficult-to-control polyphagous root-knot nematode (RKN) species of emerging importance for economically valuable crops. Nematode secretions are likely to be the first signals perceived by the plant and are thought to be involved in various aspects of the plant-nematode interaction. The aims of this work were to identify and characterize M. hispanica parasitism genes: cathepsin L cysteine protease (cpl-1), calreticulin (crt-1), β-1,4-endoglucanase-1 (eng-1) and manganese superoxide dismutase (mnsod). As there are no genomic data available for M. hispanica, primers were designed from the conserved regions of the putative parasitism genes in M. incognita and M. hapla and used to amplify the genes in M. hispanica, which led to the successful amplification of these genes in M. hispanica. Partial gene sequences were also obtained for M. arenaria, M. hapla, M. hispanica, M. incognita and M. javanica cpl-1, crt-1, eng-1 and mnsod genes, and their phylogenetic relationship analysed. In order to determine whether these genes are differentially expressed during M. hispanica development, cDNA was amplified from mRNA isolated from eggs, second-stage juveniles (J2) and females. Amplification products were observed from cDNA of all developmental stages for the Mhi-cpl-1 and Mhi-crt-1 genes. However, the gene Mhi-crt-1 exhibited intense amplification bands in females, while the Mhi-eng-1 gene was equally amplified in eggs and J2 and the Mhi-mnsod gene was only expressed in eggs. In comparison to the other RKN species, the genes Mhi-eng-1 and Mhi-mnsod showed transcription in different nematode developmental stages.
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28
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Kochetov AV. The alien replicon: Artificial genetic constructs to direct the synthesis of transmissible self-replicating RNAs. Bioessays 2014; 36:1204-12. [DOI: 10.1002/bies.201400111] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Alex V. Kochetov
- Institute of Cytology & Genetics, SB RAS; Novosibirsk Russia
- Novosibirsk State University; Novosibirsk Russia
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29
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Fragkostefanakis S, Sedeek KEM, Raad M, Zaki MS, Kalaitzis P. Virus induced gene silencing of three putative prolyl 4-hydroxylases enhances plant growth in tomato (Solanum lycopersicum). PLANT MOLECULAR BIOLOGY 2014; 85:459-71. [PMID: 24803411 DOI: 10.1007/s11103-014-0197-6] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/11/2014] [Accepted: 04/26/2014] [Indexed: 05/20/2023]
Abstract
Proline hydroxylation is a major posttranslational modification of hydroxyproline-rich glycoproteins (HRGPs) that is catalyzed by prolyl 4-hydroxylases (P4Hs). HRGPs such as arabinogalactan proteins (AGPs) and extensios play significant roles on cell wall structure and function and their implication in cell division and expansion has been reported. We used tobacco rattle virus (TRV)-based virus induced gene silencing to investigate the role of three tomato P4Hs, out of ten present in the tomato genome, in growth and development. Eight-days old tomato seedlings were infected with the appropriate TRV vectors and plants were allowed to grow under standard conditions for 6 weeks. Lower P4H mRNA levels were associated with lower hydroxyproline content in root and shoot tissues indicating successful gene silencing. P4H-silenced plants had longer roots and shoots and larger leaves. The increased leaf area can be attributed to increased cell division as indicated by the higher leaf epidermal cell number in SlP4H1- and SlP4H9-silenced plants. In contrast, SlP4H7-silenced plants had larger leaves due to enhanced cell expansion. Western blot analysis revealed that silencing of SlP4H7 and SlP4H9 was associated with reduced levels of JIM8-bound AGP and JIM11-bound extensin epitopes, while silencing of SlP4H1 reduced only the levels of AGP proteins. Collectively these results show that P4Hs have significant and distinct roles in cell division and expansion of tomato leaves.
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Affiliation(s)
- Sotirios Fragkostefanakis
- Department of Horticultural Genetics and Biotechnology, Mediterranean Agronomic Institute at Chania, PO BOX 85, 73100, Chania, Greece,
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30
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Antonino de Souza Júnior JD, Ramos Coelho R, Tristan Lourenço I, da Rocha Fragoso R, Barbosa Viana AA, Lima Pepino de Macedo L, Mattar da Silva MC, Gomes Carneiro RM, Engler G, de Almeida-Engler J, Grossi-de-Sa MF. Knocking-down Meloidogyne incognita proteases by plant-delivered dsRNA has negative pleiotropic effect on nematode vigor. PLoS One 2013; 8:e85364. [PMID: 24392004 PMCID: PMC3877404 DOI: 10.1371/journal.pone.0085364] [Citation(s) in RCA: 39] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/18/2013] [Accepted: 11/26/2013] [Indexed: 12/24/2022] Open
Abstract
The root-knot nematode Meloidogyne incognita causes serious damage and yield losses in numerous important crops worldwide. Analysis of the M. incognita genome revealed a vast number of proteases belonging to five different catalytic classes. Several reports indicate that M. incognita proteases could play important roles in nematode parasitism, besides their function in ordinary digestion of giant cell contents for feeding. The precise roles of these proteins during parasitism however are still unknown, making them interesting targets for gene silencing to address protein function. In this study we have knocked-down an aspartic (Mi-asp-1), a serine (Mi-ser-1) and a cysteine protease (Mi-cpl-1) by RNAi interference to get an insight into the function of these enzymes during a host/nematode interaction. Tobacco lines expressing dsRNA for Mi-ser-1 (dsSER), Mi-cpl-1 (dsCPL) and for the three genes together (dsFusion) were generated. Histological analysis of galls did not show clear differences in giant cell morphology. Interestingly, nematodes that infected plants expressing dsRNA for proteases produced a reduced number of eggs. In addition, nematode progeny matured in dsSER plants had reduced success in egg hatching, while progeny resulting from dsCPL and dsFusion plants were less successful to infect wild-type host plants. Quantitative PCR analysis confirmed a reduction in transcripts for Mi-cpl-1 and Mi-ser-1 proteases. Our results indicate that these proteases are possibly involved in different processes throughout nematode development, like nutrition, reproduction and embryogenesis. A better understanding of nematode proteases and their possible role during a plant-nematode interaction might help to develop new tools for phytonematode control.
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Affiliation(s)
- José Dijair Antonino de Souza Júnior
- Graduate Program in Biology Molecular, Universidade de Brasília, Brasília, Distrito Federal, Brazil
- Embrapa Recursos Genéticos e Biotecnologia, Brasília, Distrito Federal, Brazil
| | - Roberta Ramos Coelho
- Graduate Program in Biology Molecular, Universidade de Brasília, Brasília, Distrito Federal, Brazil
- Embrapa Recursos Genéticos e Biotecnologia, Brasília, Distrito Federal, Brazil
| | - Isabela Tristan Lourenço
- Graduate Program in Biology Molecular, Universidade de Brasília, Brasília, Distrito Federal, Brazil
- Embrapa Recursos Genéticos e Biotecnologia, Brasília, Distrito Federal, Brazil
| | | | - Antonio Américo Barbosa Viana
- Graduate Program in Genomic Sciences and Biotechnology, Universidade Católica de Brasília, Brasília, Distrito Federal, Brazil
| | | | | | | | - Gilbert Engler
- Institut National de la Recherche Agronomique, UMR 1355 ISA/Centre National de la Recherche Scientifique, UMR 7254 ISA/Université de Nice-Sophia Antipolis, UMR ISA, Sophia-Antipolis, France
| | - Janice de Almeida-Engler
- Institut National de la Recherche Agronomique, UMR 1355 ISA/Centre National de la Recherche Scientifique, UMR 7254 ISA/Université de Nice-Sophia Antipolis, UMR ISA, Sophia-Antipolis, France
| | - Maria Fatima Grossi-de-Sa
- Embrapa Recursos Genéticos e Biotecnologia, Brasília, Distrito Federal, Brazil
- Graduate Program in Genomic Sciences and Biotechnology, Universidade Católica de Brasília, Brasília, Distrito Federal, Brazil
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Jaouannet M, Magliano M, Arguel MJ, Gourgues M, Evangelisti E, Abad P, Rosso MN. The root-knot nematode calreticulin Mi-CRT is a key effector in plant defense suppression. MOLECULAR PLANT-MICROBE INTERACTIONS : MPMI 2013; 26:97-105. [PMID: 22857385 DOI: 10.1094/mpmi-05-12-0130-r] [Citation(s) in RCA: 90] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Root-knot nematodes (RKN) are obligate biotrophic parasites that settle close to the vascular tissues in roots, where they induce the differentiation of specialized feeding cells and maintain a compatible interaction for 3 to 8 weeks. Transcriptome analyses of the plant response to parasitic infection have shown that plant defenses are strictly controlled during the interaction. This suggests that, similar to other pathogens, RKN secrete effectors that suppress host defenses. We show here that Mi-CRT, a calreticulin (CRT) secreted by the nematode into the apoplasm of infected tissues, plays an important role in infection success, because Mi-CRT knockdown by RNA interference affected the ability of the nematodes to infect plants. Stably transformed Arabidopsis thaliana plants producing the secreted form of Mi-CRT were more susceptible to nematode infection than wild-type plants. They were also more susceptible to infection with another root pathogen, the oomycete Phytophthora parasitica. Mi-CRT overexpression in A. thaliana suppressed the induction of defense marker genes and callose deposition after treatment with the pathogen-associated molecular pattern elf18. Our results show that Mi-CRT secreted in the apoplasm by the nematode has a role in the suppression of plant basal defenses during the interaction.
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Affiliation(s)
- M Jaouannet
- Institut Sophia Agrobiotech, Sophia Antipolis, France
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Arguel MJ, Jaouannet M, Magliano M, Abad P, Rosso MN. siRNAs Trigger Efficient Silencing of a Parasitism Gene in Plant Parasitic Root-Knot Nematodes. Genes (Basel) 2012; 3:391-408. [PMID: 24704976 PMCID: PMC3899990 DOI: 10.3390/genes3030391] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/10/2012] [Revised: 06/18/2012] [Accepted: 06/26/2012] [Indexed: 12/20/2022] Open
Abstract
Expanding genomic data on plant pathogens open new perspectives for the development of specific and environment friendly pest management strategies based on the inhibition of parasitism genes that are essential for the success of infection. Identifying such genes relies on accurate reverse genetics tools and the screening of pathogen knock-down phenotypes. Root-knot nematodes are major cosmopolitan crop pests that feed on a wide range of host plants. Small interfering RNAs (siRNAs) would provide a powerful tool for reverse genetics of nematode parasitism genes provided that they could (1) target genes expressed in inner tissues of infective nematodes and (2) target genes expressed during parasitism. In this study, we show that siRNAs can access inner tissues of the infective juveniles during soaking and accumulate in the esophagus, amphidial pouches and related neurons of the nematode. We provide evidence that siRNAs can trigger knock-down of the parasitism gene Mi-CRT, a calreticulin gene expressed in the esophageal glands of Meloidogyne incognita. Mi-CRT knock-down in infective juveniles affected nematode virulence. However, Mi-CRT knock-down was not persistent after plant infection, indicating that siRNA-mediated RNAi is best suited for functional analysis of genes involved in pre-parasitic stages or in the early steps of infection.
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Affiliation(s)
- Marie-Jeanne Arguel
- INRA, UMR 1355 Institut Sophia Agrobiotech, Interactions Plantes-Nematodes, Sophia Antipolis F-06903, France.
| | - Maëlle Jaouannet
- INRA, UMR 1355 Institut Sophia Agrobiotech, Interactions Plantes-Nematodes, Sophia Antipolis F-06903, France.
| | - Marc Magliano
- INRA, UMR 1355 Institut Sophia Agrobiotech, Interactions Plantes-Nematodes, Sophia Antipolis F-06903, France.
| | - Pierre Abad
- INRA, UMR 1355 Institut Sophia Agrobiotech, Interactions Plantes-Nematodes, Sophia Antipolis F-06903, France.
| | - Marie-Noëlle Rosso
- INRA, UMR 1355 Institut Sophia Agrobiotech, Interactions Plantes-Nematodes, Sophia Antipolis F-06903, France.
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Nunes CC, Dean RA. Host-induced gene silencing: a tool for understanding fungal host interaction and for developing novel disease control strategies. MOLECULAR PLANT PATHOLOGY 2012; 13:519-29. [PMID: 22111693 PMCID: PMC6638818 DOI: 10.1111/j.1364-3703.2011.00766.x] [Citation(s) in RCA: 114] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/17/2023]
Abstract
Recent discoveries regarding small RNAs and the mechanisms of gene silencing are providing new opportunities to explore fungal pathogen-host interactions and potential strategies for novel disease control. Plant pathogenic fungi are a constant and major threat to global food security; they represent the largest group of disease-causing agents on crop plants on the planet. An initial understanding of RNA silencing mechanisms and small RNAs was derived from model fungi. Now, new knowledge with practical implications for RNA silencing is beginning to emerge from the study of plant-fungus interactions. Recent studies have shown that the expression of silencing constructs in plants designed on fungal genes can specifically silence their targets in invading pathogenic fungi, such as Fusarium verticillioides, Blumeria graminis and Puccinia striiformis f.sp. tritici. Here, we highlight the important general aspects of RNA silencing mechanisms and emphasize recent findings from plant pathogenic fungi. Strategies to employ RNA silencing to investigate the basis of fungal pathogenesis are discussed. Finally, we address important aspects for the development of fungal-derived resistance through the expression of silencing constructs in host plants as a powerful strategy to control fungal disease.
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Affiliation(s)
- Cristiano C Nunes
- Department of Plant Pathology, Fungal Genomics Laboratory, Center for Integrated Fungal Research, North Carolina State University, Raleigh, NC 27606, USA
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Kumar P, Pandit SS, Baldwin IT. Tobacco rattle virus vector: A rapid and transient means of silencing manduca sexta genes by plant mediated RNA interference. PLoS One 2012; 7:e31347. [PMID: 22312445 PMCID: PMC3270032 DOI: 10.1371/journal.pone.0031347] [Citation(s) in RCA: 101] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/12/2011] [Accepted: 01/06/2012] [Indexed: 12/31/2022] Open
Abstract
BACKGROUND RNAi can be achieved in insect herbivores by feeding them host plants stably transformed to express double stranded RNA (dsRNA) of selected midgut-expressed genes. However, the development of stably transformed plants is a slow and laborious process and here we developed a rapid, reliable and transient method. We used viral vectors to produce dsRNA in the host plant Nicotiana attenuata to transiently silence midgut genes of the plant's lepidopteran specialist herbivore, Manduca sexta. To compare the efficacy of longer, undiced dsRNA for insect gene silencing, we silenced N. attenuata's dicer genes (NaDCL1- 4) in all combinations in a plant stably transformed to express dsRNA targeting an insect gene. METHODOLOGY/PRINCIPAL FINDINGS Stable transgenic N. attenuata plants harboring a 312 bp fragment of MsCYP6B46 in an inverted repeat orientation (ir-CYP6B46) were generated to produce CYP6B46 dsRNA. After consuming these plants, transcripts of CYP6B46 were significantly reduced in M. sexta larval midguts. The same 312 bp cDNA was cloned in an antisense orientation into a TRV vector and Agro-infiltrated into N. attenuata plants. When larvae ingested these plants, similar reductions in CYP6B46 transcripts were observed without reducing transcripts of the most closely related MsCYP6B45. We used this transient method to rapidly silence the expression of two additional midgut-expressed MsCYPs. CYP6B46 transcripts were further reduced in midguts, when the larvae fed on ir-CYP6B46 plants transiently silenced for two combinations of NaDCLs (DCL1/3/4 and DCL2/3/4) and contained higher concentrations of longer, undiced CYP6B46 dsRNA. CONCLUSIONS Both stable and transient expression of CYP6B46 dsRNA in host plants provides a specific and robust means of silencing this gene in M. sexta larvae, but the transient system is better suited for high throughput analyses. Transiently silencing NaDCLs in ir-CYP6B46 plants increased the silencing of MsCYP6B46, suggested that insect's RNAi machinery is more efficient with longer lengths of ingested dsRNA.
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Affiliation(s)
- Pavan Kumar
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Sagar Subhash Pandit
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Jena, Germany
| | - Ian T. Baldwin
- Department of Molecular Ecology, Max Planck Institute for Chemical Ecology, Jena, Germany
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Mao YB, Tao XY, Xue XY, Wang LJ, Chen XY. Cotton plants expressing CYP6AE14 double-stranded RNA show enhanced resistance to bollworms. Transgenic Res 2011; 20:665-73. [PMID: 20953975 PMCID: PMC3090577 DOI: 10.1007/s11248-010-9450-1] [Citation(s) in RCA: 149] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/11/2010] [Accepted: 09/29/2010] [Indexed: 12/30/2022]
Abstract
RNA interference (RNAi) plays an important role in regulating gene expression in eukaryotes. Previously, we generated Arabidopsis and tobacco plants expressing double-stranded RNA (dsRNA) targeting a cotton bollworm (Helicoverpa armigera) P450 gene, CYP6AE14. Bollworms fed on transgenic dsCYP6AE14 plants showed suppressed CYP6AE14 expression and reduced growth on gossypol-containing diet (Mao et al., in Nat Biotechnol 25: 1307-1313, 2007). Here we report generation and analysis of dsRNA-expressing cotton (Gossypium hirsutum) plants. Bollworm larvae reared on T2 plants of the ds6-3 line exhibited drastically retarded growth, and the transgenic plants were less damaged by bollworms than the control. Quantitative reverse-transcription polymerase chain reaction (RT-PCR) showed that the CYP6AE14 expression level was reduced in the larvae as early as 4 h after feeding on the transgenic plants; accordingly, the CYP6AE14 protein level dropped. These results demonstrated that transgenic cotton plants expressing dsCYP6AE14 acquired enhanced resistance to cotton bollworms, and that RNAi technology can be used for engineering insect-proof cotton cultivar.
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Affiliation(s)
- Ying-Bo Mao
- National Key Laboratory of Plant Molecular Genetics, Institute of Plant Physiology and Ecology, Shanghai Institutes for Biological Sciences, Chinese Academy of Sciences, 300 Fenglin Road, Shanghai, 200032, People's Republic of China.
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Li X, Zhuo K, Luo M, Sun L, Liao J. Molecular cloning and characterization of a calreticulin cDNA from the pinewood nematode Bursaphelenchus xylophilus. Exp Parasitol 2011; 128:121-6. [PMID: 21371475 DOI: 10.1016/j.exppara.2011.02.017] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2010] [Revised: 02/18/2011] [Accepted: 02/21/2011] [Indexed: 10/18/2022]
Abstract
The cloning and characterization of a cDNA encoding a calreticulin from the pinewood nematode Bursaphelenchus xylophilus is described herein. The full-length cDNA (Bx-crt-1) contained a 1200 bp open reading frame that could be translated to a 399 amino acid polypeptide. The deduced protein contained highly conserved regions of a calreticulin gene and had 66.2-70.1% amino acid sequence identity to other calreticulin sequences from nematodes. RNAi, RT-PCR amplification, and southern blot suggest that Bx-crt-1 may be important for the development of B. xylophilus.
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Affiliation(s)
- Xundong Li
- Laboratory of Plant Nematology, South China Agricultural University, Guangzhou 510642, China
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Lacomme C. Milestones in the development and applications of plant virus vector as gene silencing platforms. Curr Top Microbiol Immunol 2011; 375:89-105. [PMID: 22033699 DOI: 10.1007/82_2011_186] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
Abstract
One of the main post-genomics challenges facing scientists remains the identification of gene function in a large number of plant species. Plant viruses offer great potential in linking genes to phenotypes through epigenetic expression or knockdown of selected genes. The past decade has seen the development and ever increasing applications of a gene knockdown technique termed virus-induced gene silencing (VIGS). VIGS recapitulates an RNA-mediated antiviral defense mechanism, mediating a homology-based post-transcriptional degradation of selected plant RNAs, leading to a loss-of-function phenotype. Due to its rapidity and increasing number of virus vectors developed as gene silencing platforms, VIGS has become a powerful technology to determine the function of genes in an increasing number of crop species, where the routinely available transgenesis or mutagenesis approaches are often not amenable to large genomes and complex genetic backgrounds.
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Affiliation(s)
- Christophe Lacomme
- Virology and Zoology Section, Science and Advice for Scottish Agriculture (SASA), Roddinglaw Road, Edinburgh, EH12 9FJ, UK,
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Abstract
The tobraviruses, Tobacco rattle virus (TRV), Pea early-browning virus (PEBV) and Pepper ringspot virus (PepRSV), are positive-strand RNA viruses with rod-shaped virus particles that are transmitted between plants by trichodorid nematodes. As a group, these viruses infect many plant species, with TRV having the widest host range. Recent studies have begun to dissect the interaction of TRV with potato, currently the most commercially important crop disease caused by any of the tobraviruses. As well as being successful plant pathogens, these viruses have become widely used as vectors for expression in plants of nonviral proteins or, more frequently, as initiators of virus-induced gene silencing (VIGS). Precisely why tobraviruses should be so effective as VIGS vectors is not known; however, molecular studies of the mode of action of the tobravirus silencing suppressor protein are shedding some light on this process.
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