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Ranc N, Cain JW, Cagnacci F, Moorcroft PR. The role of memory-based movements in the formation of animal home ranges. J Math Biol 2024; 88:59. [PMID: 38589609 DOI: 10.1007/s00285-024-02055-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/28/2023] [Revised: 01/22/2024] [Accepted: 01/28/2024] [Indexed: 04/10/2024]
Abstract
Most animals live in spatially-constrained home ranges. The prevalence of this space-use pattern in nature suggests that general biological mechanisms are likely to be responsible for their occurrence. Individual-based models of animal movement in both theoretical and empirical settings have demonstrated that the revisitation of familiar areas through memory can lead to the formation of stable home ranges. Here, we formulate a deterministic, mechanistic home range model that includes the interplay between a bi-component memory and resource preference, and evaluate resulting patterns of space-use. We show that a bi-component memory process can lead to the formation of stable home ranges and control its size, with greater spatial memory capabilities being associated with larger home range size. The interplay between memory and resource preferences gives rise to a continuum of space-use patterns-from spatially-restricted movements into a home range that is influenced by local resource heterogeneity, to diffusive-like movements dependent on larger-scale resource distributions, such as in nomadism. Future work could take advantage of this model formulation to evaluate the role of memory in shaping individual performance in response to varying spatio-temporal resource patterns.
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Affiliation(s)
- Nathan Ranc
- Université de Toulouse, INRAE, CEFS, Castanet-Tolosan, France.
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA.
- Department of Biodiversity and Molecular Ecology, Research and Innovation Centre, Fondazione Edmund Mach, San Michele All'Adige, Italy.
| | - John W Cain
- Department of Mathematics, Harvard University, Cambridge, MA, USA
| | - Francesca Cagnacci
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA
- Animal Ecology Unit, Research and Innovation Centre, Fondazione Edmund Mach, Trento, Italy
- National Biodiversity Future Center, Palermo, Italy
| | - Paul R Moorcroft
- Department of Organismic and Evolutionary Biology, Harvard University, Cambridge, MA, USA
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2
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Liu Y, Dodge S, Simcharoen A, Ahearn SC, Smith JLD. Analyzing tiger interaction and home range shifts using a time-geographic approach. MOVEMENT ECOLOGY 2024; 12:13. [PMID: 38310255 PMCID: PMC10838465 DOI: 10.1186/s40462-024-00454-0] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/17/2023] [Accepted: 01/24/2024] [Indexed: 02/05/2024]
Abstract
BACKGROUND Interaction through movement can be used as a marker to understand and model interspecific and intraspecific species dynamics, and the collective behavior of animals sharing the same space. This research leverages the time-geography framework, commonly used in human movement research, to explore the dynamic patterns of interaction between Indochinese tigers (Panthera tigris corbeti) in the western forest complex (WEFCOM) in Thailand. METHODS We propose and assess ORTEGA, a time-geographic interaction analysis method, to trace spatio-temporal interactions patterns and home range shifts among tigers. Using unique GPS tracking data of tigers in WEFCOM collected over multiple years, concurrent and delayed interaction patterns of tigers are investigated. The outcomes are compared for intraspecific tiger interaction across different genders, relationships, and life stages. Additionally, the performance of ORTEGA is compared to a commonly used proximity-based approach. RESULTS Among the 67 tracked tigers, 42 show concurrent interactions at shared boundaries. Further investigation of five tigers with overlapping home ranges (two adult females, a male, and two young male tigers) suggests that the mother tiger and her two young mostly stay together before their dispersal but interact less post-dispersal. The male tiger increases encounters with the mother tiger while her young shift their home ranges. On another timeline, the neighbor female tiger mostly avoids the mother tiger. Through these home range dynamics and interaction patterns, we identify four types of interaction among these tigers: following, encounter, latency, and avoidance. Compared to the proximity-based approach, ORTEGA demonstrates better detects concurrent mother-young interactions during pre-dispersal, while the proximity-based approach misses many interactions among the dyads. With larger spatial buffers and temporal windows, the proximity-based approach detects more encounters but may overestimate the duration of interaction. CONCLUSIONS This research demonstrates the applicability and merits of ORTEGA as a time-geographic based approach to animal movement interaction analysis. We show time geography can develop valuable, data-driven insights about animal behavior and interactions. ORTEGA effectively traces frequent encounters and temporally delayed interactions between animals, without relying on specific spatial and temporal buffers. Future research should integrate contextual and behavioral information to better identify and characterize the nature of species interaction.
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Affiliation(s)
- Yifei Liu
- Department of Geography, University of California, Santa Barbara, USA.
| | - Somayeh Dodge
- Department of Geography, University of California, Santa Barbara, USA
| | - Achara Simcharoen
- Protected Area Administration, Office 12, Department of National Parks, Wildlife and Plant Conservation, Nakhon Sawan, Thailand
| | | | - James L D Smith
- Department of Fisheries, Wildlife and Conservation Biology, University of Minnesota, Twin Cities, USA
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3
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Golnaraghi F, Quint DA, Gopinathan A. Optimal foraging strategies for mutually avoiding competitors. J Theor Biol 2023; 570:111537. [PMID: 37207720 DOI: 10.1016/j.jtbi.2023.111537] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/30/2021] [Revised: 05/02/2023] [Accepted: 05/11/2023] [Indexed: 05/21/2023]
Abstract
Many animals are known to exhibit foraging patterns where the distances they travel in a given direction are drawn from a heavy-tailed Lévy distribution. Previous studies have shown that, under sparse and random resource conditions, solitary non-destructive (with regenerating resources) foragers perform a maximally efficient search with Lévy exponent μ equal to 2, while for destructive foragers, efficiency decreases with μ monotonically and there is no optimal μ. However, in nature, there also exist situations where multiple foragers, displaying avoidance behavior, interact with each other competitively. To understand the effects of such competition, we develop a stochastic agent-based simulation that models competitive foraging among mutually avoiding individuals by incorporating an avoidance zone, or territory, of a certain size around each forager which is not accessible for foraging by other competitors. For non-destructive foraging, our results show that with increasing size of the territory and number of agents the optimal Lévy exponent is still approximately 2 while the overall efficiency of the search decreases. At low values of the Lévy exponent, however, increasing territory size actually increases efficiency. For destructive foraging, we show that certain kinds of avoidance can lead to qualitatively different behavior from solitary foraging, such as the existence of an optimal search with 1<μ<2. Finally, we show that the variance among the efficiencies of the agents increases with increasing Lévy exponent for both solitary and competing foragers, suggesting that reducing variance might be a selective pressure for foragers adopting lower values of μ. Taken together, our results suggest that, for multiple foragers, mutual avoidance and efficiency variance among individuals can lead to optimal Lévy searches with exponents different from those for solitary foragers.
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Affiliation(s)
- Farnaz Golnaraghi
- Department of Physics, University of California - Merced, 5200 North Lake Road, Merced, 95343, CA, USA
| | - David A Quint
- Physical and Life Sciences (PLS), Lawrence Livermore National Laboratory, 7000 East Avenue, Livermore, 94550, CA, USA
| | - Ajay Gopinathan
- Department of Physics, University of California - Merced, 5200 North Lake Road, Merced, 95343, CA, USA.
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4
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Potts JR, Börger L. How to scale up from animal movement decisions to spatiotemporal patterns: An approach via step selection. J Anim Ecol 2023; 92:16-29. [PMID: 36321473 PMCID: PMC10099581 DOI: 10.1111/1365-2656.13832] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Accepted: 10/16/2022] [Indexed: 11/17/2022]
Abstract
Uncovering the mechanisms behind animal space use patterns is of vital importance for predictive ecology, thus conservation and management of ecosystems. Movement is a core driver of those patterns so understanding how movement mechanisms give rise to space use patterns has become an increasingly active area of research. This study focuses on a particular strand of research in this area, based around step selection analysis (SSA). SSA is a popular way of inferring drivers of movement decisions, but, perhaps less well appreciated, it also parametrises a model of animal movement. Of key interest is that this model can be propagated forwards in time to predict the space use patterns over broader spatial and temporal scales than those that pertain to the proximate movement decisions of animals. Here, we provide a guide for understanding and using the various existing techniques for scaling up step selection models to predict broad-scale space use patterns. We give practical guidance on when to use which technique, as well as specific examples together with code in R and Python. By pulling together various disparate techniques into one place, and providing code and instructions in simple examples, we hope to highlight the importance of these techniques and make them accessible to a wider range of ecologists, ultimately helping expand the usefulness of SSA.
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Affiliation(s)
- Jonathan R Potts
- School of Mathematics and Statistics, University of Sheffield, Sheffield, UK
| | - Luca Börger
- Department of Biosciences, College of Science, Swansea University, Swansea, UK
- Centre for Biomathematics, College of Science, Swansea University, Swansea, UK
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5
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McClintock BT, Abrahms B, Chandler RB, Conn PB, Converse SJ, Emmet RL, Gardner B, Hostetter NJ, Johnson DS. An integrated path for spatial capture-recapture and animal movement modeling. Ecology 2022; 103:e3473. [PMID: 34270790 PMCID: PMC9786756 DOI: 10.1002/ecy.3473] [Citation(s) in RCA: 16] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 11/17/2020] [Revised: 01/25/2021] [Accepted: 03/15/2021] [Indexed: 12/30/2022]
Abstract
Ecologists and conservation biologists increasingly rely on spatial capture-recapture (SCR) and movement modeling to study animal populations. Historically, SCR has focused on population-level processes (e.g., vital rates, abundance, density, and distribution), whereas animal movement modeling has focused on the behavior of individuals (e.g., activity budgets, resource selection, migration). Even though animal movement is clearly a driver of population-level patterns and dynamics, technical and conceptual developments to date have not forged a firm link between the two fields. Instead, movement modeling has typically focused on the individual level without providing a coherent scaling from individual- to population-level processes, whereas SCR has typically focused on the population level while greatly simplifying the movement processes that give rise to the observations underlying these models. In our view, the integration of SCR and animal movement modeling has tremendous potential for allowing ecologists to scale up from individuals to populations and advancing the types of inferences that can be made at the intersection of population, movement, and landscape ecology. Properly accounting for complex animal movement processes can also potentially reduce bias in estimators of population-level parameters, thereby improving inferences that are critical for species conservation and management. This introductory article to the Special Feature reviews recent advances in SCR and animal movement modeling, establishes a common notation, highlights potential advantages of linking individual-level (Lagrangian) movements to population-level (Eulerian) processes, and outlines a general conceptual framework for the integration of movement and SCR models. We then identify important avenues for future research, including key challenges and potential pitfalls in the developments and applications that lie ahead.
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Affiliation(s)
- Brett T. McClintock
- Marine Mammal LaboratoryNOAA‐NMFS Alaska Fisheries Science CenterSeattleWashingtonUSA
| | - Briana Abrahms
- Department of BiologyUniversity of WashingtonLife Sciences Building, Box 351800SeattleWashingtonUSA
| | - Richard B. Chandler
- Warnell School of Forestry and Natural ResourcesUniversity of Georgia180 E. Green St.AthensGeorgiaUSA
| | - Paul B. Conn
- Marine Mammal LaboratoryNOAA‐NMFS Alaska Fisheries Science CenterSeattleWashingtonUSA
| | - Sarah J. Converse
- U.S. Geological SurveyWashington Cooperative Fish and Wildlife Research UnitSchool of Environmental and Forest Sciences & School of Aquatic and Fishery SciencesUniversity of WashingtonBox 355020SeattleWashingtonUSA
| | - Robert L. Emmet
- Quantitative Ecology and Resource ManagementUniversity of WashingtonSeattleWashingtonUSA
| | - Beth Gardner
- School of Environmental and Forest SciencesUniversity of WashingtonSeattleWashingtonUSA
| | - Nathan J. Hostetter
- Washington Cooperative Fish and Wildlife Research UnitSchool of Aquatic and Fishery SciencesUniversity of WashingtonSeattleWashingtonUSA
| | - Devin S. Johnson
- Marine Mammal LaboratoryNOAA‐NMFS Alaska Fisheries Science CenterSeattleWashingtonUSA
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6
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Potts JR, Börger L, Strickland BK, Street GM. Assessing the predictive power of step selection functions: how social and environmental interactions affect animal space use. Methods Ecol Evol 2022. [DOI: 10.1111/2041-210x.13904] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Jonathan R. Potts
- School of Mathematics and Statistics University of Sheffield, Hicks Building, Hounsfield Road Sheffield UK
| | - Luca Börger
- Department of Biosciences College of Science Swansea University, Singleton Park Swansea Wales UK
- Centre for Biomathematics College of Science Swansea University, Singleton Park Swansea Wales UK
| | - Bronson K. Strickland
- Department of Wildlife, Fisheries, and Aquaculture Mississippi State University Mississippi State MS USA
| | - Garrett M. Street
- Department of Wildlife, Fisheries, and Aquaculture Mississippi State University Mississippi State MS USA
- Quantitative Ecology and Spatial Technologies Laboratory Mississippi State University Mississippi State MS USA
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7
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Potts JR, Giunta V, Lewis MA. Beyond resource selection: emergent spatio–temporal distributions from animal movements and stigmergent interactions. OIKOS 2022. [DOI: 10.1111/oik.09188] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/17/2022]
Affiliation(s)
- Jonathan R. Potts
- School of Mathematics and Statistics, Univ. of Sheffield, Hicks Building Sheffield UK
| | - Valeria Giunta
- School of Mathematics and Statistics, Univ. of Sheffield, Hicks Building Sheffield UK
| | - Mark A. Lewis
- Depts of Mathematical and Statistical Sciences and Biological Sciences, Univ. of Alberta Edmonton Alberta Canada
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8
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Costa-Pereira R, Moll RJ, Jesmer BR, Jetz W. Animal tracking moves community ecology: Opportunities and challenges. J Anim Ecol 2022; 91:1334-1344. [PMID: 35388473 DOI: 10.1111/1365-2656.13698] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2021] [Accepted: 03/27/2022] [Indexed: 11/28/2022]
Abstract
1. Individual decisions regarding how, why, and when organisms interact with one another and with their environment scale up to shape patterns and processes in communities. Recent evidence has firmly established the prevalence of intraspecific variation in nature and its relevance in community ecology, yet challenges associated with collecting data on large numbers of individual conspecifics and heterospecifics has hampered integration of individual variation into community ecology. 2. Nevertheless, recent technological and statistical advances in GPS-tracking, remote sensing, and behavioral ecology offer a toolbox for integrating intraspecific variation into community processes. More than simply describing where organisms go, movement data provide unique information about interactions and environmental associations from which a true individual-to-community framework can be built. 3. By linking the movement paths of both conspecifics and heterospecifics with environmental data, ecologists can now simultaneously quantify intra- and interspecific variation regarding the Eltonian (biotic interactions) and Grinnellian (environmental conditions) factors underpinning community assemblage and dynamics, yet substantial logistical and analytical challenges must be addressed for these approaches to realize their full potential. 4. Across communities, empirical integration of Eltonian and Grinnellian factors can support conservation applications and reveal metacommunity dynamics via tracking-based dispersal data. As the logistical and analytical challenges associated with multi-species tracking are surmounted, we envision a future where individual movements and their ecological and environmental signatures will bring resolution to many enduring issues in community ecology.
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Affiliation(s)
- Raul Costa-Pereira
- Departamento de Biologia Animal, Instituto de Biociências, Universidade Estadual de Campinas, Brazil
| | - Remington J Moll
- Department of Natural Resources and the Environment, University of New Hampshire, 56 College Road, Durham, NH 03824, USA
| | - Brett R Jesmer
- Department of Fish and Wildlife Conservation, Virginia Tech, Blacksburg, VA 24061, USA.,Department of Ecology and Evolutionary Biology, Yale University, 165 Prospect St., New Haven, CT 06520, USA.,Center for Biodiversity and Global Change, Yale University, 165 Prospect St., New Haven, CT 06520, USA
| | - Walter Jetz
- Department of Ecology and Evolutionary Biology, Yale University, 165 Prospect St., New Haven, CT 06520, USA.,Center for Biodiversity and Global Change, Yale University, 165 Prospect St., New Haven, CT 06520, USA
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9
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Northrup JM, Vander Wal E, Bonar M, Fieberg J, Laforge MP, Leclerc M, Prokopenko CM, Gerber BD. Conceptual and methodological advances in habitat-selection modeling: guidelines for ecology and evolution. ECOLOGICAL APPLICATIONS : A PUBLICATION OF THE ECOLOGICAL SOCIETY OF AMERICA 2022; 32:e02470. [PMID: 34626518 PMCID: PMC9285351 DOI: 10.1002/eap.2470] [Citation(s) in RCA: 43] [Impact Index Per Article: 14.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/01/2021] [Accepted: 05/17/2021] [Indexed: 06/13/2023]
Abstract
Habitat selection is a fundamental animal behavior that shapes a wide range of ecological processes, including animal movement, nutrient transfer, trophic dynamics and population distribution. Although habitat selection has been a focus of ecological studies for decades, technological, conceptual and methodological advances over the last 20 yr have led to a surge in studies addressing this process. Despite the substantial literature focused on quantifying the habitat-selection patterns of animals, there is a marked lack of guidance on best analytical practices. The conceptual foundations of the most commonly applied modeling frameworks can be confusing even to those well versed in their application. Furthermore, there has yet to be a synthesis of the advances made over the last 20 yr. Therefore, there is a need for both synthesis of the current state of knowledge on habitat selection, and guidance for those seeking to study this process. Here, we provide an approachable overview and synthesis of the literature on habitat-selection analyses (HSAs) conducted using selection functions, which are by far the most applied modeling framework for understanding the habitat-selection process. This review is purposefully non-technical and focused on understanding without heavy mathematical and statistical notation, which can confuse many practitioners. We offer an overview and history of HSAs, describing the tortuous conceptual path to our current understanding. Through this overview, we also aim to address the areas of greatest confusion in the literature. We synthesize the literature outlining the most exciting conceptual advances in the field of habitat-selection modeling, discussing the substantial ecological and evolutionary inference that can be made using contemporary techniques. We aim for this paper to provide clarity for those navigating the complex literature on HSAs while acting as a reference and best practices guide for practitioners.
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Affiliation(s)
- Joseph M Northrup
- Wildlife Research and Monitoring Section, Ontario Ministry of Northern Development, Mines, Natural Resources and Forestry, Peterborough, Ontario, K9L 1Z8, Canada
- Environmental and Life Sciences Graduate Program, Trent University, Peterborough, Ontario, K9L 1Z8, Canada
| | - Eric Vander Wal
- Department of Biology, Memorial University of Newfoundland, St. John's, Newfoundland, A1B 3X9, Canada
| | - Maegwin Bonar
- Environmental and Life Sciences Graduate Program, Trent University, Peterborough, Ontario, K9L 1Z8, Canada
| | - John Fieberg
- Department of Fisheries, Wildlife and Conservation Biology, University of Minnesota, St. Paul, Minnesota, USA
| | - Michel P Laforge
- Department of Biology, Memorial University of Newfoundland, St. John's, Newfoundland, A1B 3X9, Canada
| | - Martin Leclerc
- Département de Biologie, Caribou Ungava and Centre d'études nordiques, Université Laval, Québec, Québec, G1V 0A6, Canada
| | - Christina M Prokopenko
- Department of Biology, Memorial University of Newfoundland, St. John's, Newfoundland, A1B 3X9, Canada
| | - Brian D Gerber
- Department of Natural Resources Science, University of Rhode Island, Kingston, Rhode Island, USA
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10
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Lewis MA, Fagan WF, Auger-Méthé M, Frair J, Fryxell JM, Gros C, Gurarie E, Healy SD, Merkle JA. Learning and Animal Movement. Front Ecol Evol 2021. [DOI: 10.3389/fevo.2021.681704] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023] Open
Abstract
Integrating diverse concepts from animal behavior, movement ecology, and machine learning, we develop an overview of the ecology of learning and animal movement. Learning-based movement is clearly relevant to ecological problems, but the subject is rooted firmly in psychology, including a distinct terminology. We contrast this psychological origin of learning with the task-oriented perspective on learning that has emerged from the field of machine learning. We review conceptual frameworks that characterize the role of learning in movement, discuss emerging trends, and summarize recent developments in the analysis of movement data. We also discuss the relative advantages of different modeling approaches for exploring the learning-movement interface. We explore in depth how individual and social modalities of learning can matter to the ecology of animal movement, and highlight how diverse kinds of field studies, ranging from translocation efforts to manipulative experiments, can provide critical insight into the learning process in animal movement.
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11
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Munden R, Börger L, Wilson RP, Redcliffe J, Brown R, Garel M, Potts JR. Why did the animal turn? Time‐varying step selection analysis for inference between observed turning‐points in high frequency data. Methods Ecol Evol 2021. [DOI: 10.1111/2041-210x.13574] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Rhys Munden
- School of Mathematics and Statistics University of Sheffield Sheffield UK
| | - Luca Börger
- Department of Biosciences College of Science Swansea University Swansea UK
- Centre for Biomathematics College of Science Swansea University Swansea UK
| | - Rory P. Wilson
- Department of Biosciences College of Science Swansea University Swansea UK
| | - James Redcliffe
- Department of Biosciences College of Science Swansea University Swansea UK
| | - Rowan Brown
- College of Engineering Swansea UniversityBay Campus Wales UK
| | - Mathieu Garel
- Office Français de la BiodiversitéUnité Ongulés Sauvages Gières France
| | - Jonathan R. Potts
- School of Mathematics and Statistics University of Sheffield Sheffield UK
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12
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Eisaguirre JM, Booms TL, Barger CP, Goddard SD, Breed GA. Multistate Ornstein–Uhlenbeck approach for practical estimation of movement and resource selection around central places. Methods Ecol Evol 2020. [DOI: 10.1111/2041-210x.13538] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/26/2022]
Affiliation(s)
- Joseph M. Eisaguirre
- Department of Biology & Wildlife University of Alaska Fairbanks Fairbanks AK USA
- Department of Mathematics & Statistics University of Alaska Fairbanks Fairbanks AK USA
| | | | | | - Scott D. Goddard
- Department of Mathematics & Statistics University of Alaska Fairbanks Fairbanks AK USA
| | - Greg A. Breed
- Department of Biology & Wildlife University of Alaska Fairbanks Fairbanks AK USA
- Institute of Arctic Biology University of Alaska Fairbanks Fairbanks AK USA
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13
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Simulating the relative effects of movement and sociality on the distribution of animal-transported subsidies. THEOR ECOL-NETH 2020. [DOI: 10.1007/s12080-020-00480-9] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/23/2022]
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14
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Ellison N, Hatchwell BJ, Biddiscombe SJ, Napper CJ, Potts JR. Mechanistic home range analysis reveals drivers of space use patterns for a non-territorial passerine. J Anim Ecol 2020; 89:2763-2776. [PMID: 32779181 DOI: 10.1111/1365-2656.13292] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/04/2019] [Accepted: 06/04/2020] [Indexed: 01/26/2023]
Abstract
Home ranging is a near-ubiquitous phenomenon in the animal kingdom. Understanding the behavioural mechanisms that give rise to observed home range patterns is thus an important general question, and mechanistic home range analysis (MHRA) provides the tools to address it. However, such analysis has hitherto been principally restricted to scent-marking territorial animals, so its potential breadth of application has not been tested. Here, we apply MHRA to a population of long-tailed tits Aegithalos caudatus, a non-territorial passerine, in the non-breeding season where there is no clear 'central place' near which birds need to remain. The aim is to uncover the principal movement mechanisms underlying observed home range formation. Our foundational models consist of memory-mediated conspecific avoidance between flocks, combined with attraction to woodland. These are then modified to incorporate the effects of flock size and relatedness (i.e. kinship), to uncover the effect of these on the mechanisms of home range formation. We found that a simple model of spatial avoidance, together with attraction to the central parts of woodland areas, accurately captures long-tailed tit home range patterns. Refining these models further, we show that the magnitude of spatial avoidance by a flock is negatively correlated to both the relative size of the flock (compared to its neighbour) and the relatedness of the flock with its neighbour. Our study applies MHRA beyond the confines of scent-marking, territorial animals, so paves the way for much broader taxonomic application. These could potentially help uncover general properties underlying the emergence of animal space use patterns. This is also the first study to apply MHRA to questions of relatedness and flock size, thus broadening the potential possible applications of this suite of analytic techniques.
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Affiliation(s)
- Natasha Ellison
- School of Mathematics and Statistics, University of Sheffield, Sheffield, UK
| | - Ben J Hatchwell
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, UK
| | - Sarah J Biddiscombe
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, UK
| | - Clare J Napper
- Department of Animal and Plant Sciences, University of Sheffield, Sheffield, UK
| | - Jonathan R Potts
- School of Mathematics and Statistics, University of Sheffield, Sheffield, UK
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15
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Ordiz A, Uzal A, Milleret C, Sanz-Pérez A, Zimmermann B, Wikenros C, Wabakken P, Kindberg J, Swenson JE, Sand H. Wolf habitat selection when sympatric or allopatric with brown bears in Scandinavia. Sci Rep 2020; 10:9941. [PMID: 32555291 PMCID: PMC7303184 DOI: 10.1038/s41598-020-66626-1] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/21/2019] [Accepted: 05/26/2020] [Indexed: 11/09/2022] Open
Abstract
Habitat selection of animals depends on factors such as food availability, landscape features, and intra- and interspecific interactions. Individuals can show several behavioral responses to reduce competition for habitat, yet the mechanisms that drive them are poorly understood. This is particularly true for large carnivores, whose fine-scale monitoring is logistically complex and expensive. In Scandinavia, the home-range establishment and kill rates of gray wolves (Canis lupus) are affected by the coexistence with brown bears (Ursus arctos). Here, we applied resource selection functions and a multivariate approach to compare wolf habitat selection within home ranges of wolves that were either sympatric or allopatric with bears. Wolves selected for lower altitudes in winter, particularly in the area where bears and wolves are sympatric, where altitude is generally higher than where they are allopatric. Wolves may follow the winter migration of their staple prey, moose (Alces alces), to lower altitudes. Otherwise, we did not find any effect of bear presence on wolf habitat selection, in contrast with our previous studies. Our new results indicate that the manifestation of a specific driver of habitat selection, namely interspecific competition, can vary at different spatial-temporal scales. This is important to understand the structure of ecological communities and the varying mechanisms underlying interspecific interactions.
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Affiliation(s)
- Andrés Ordiz
- Faculty of Applied Ecology, Agricultural Sciences and Biotechnology, Inland Norway University of Applied Sciences, Evenstad, NO-2480, Koppang, Norway. .,Faculty of Environmental Sciences and Natural Resource Management, Norwegian University of Life Sciences, Post box 5003, NO-1432, Ås, Norway. .,School of Animal, Rural and Environmental Sciences, Nottingham Trent University, Brackenhurst, Southwell, Nottinghamshire, NG25 0FQ, UK.
| | - Antonio Uzal
- School of Animal, Rural and Environmental Sciences, Nottingham Trent University, Brackenhurst, Southwell, Nottinghamshire, NG25 0FQ, UK
| | - Cyril Milleret
- Faculty of Environmental Sciences and Natural Resource Management, Norwegian University of Life Sciences, Post box 5003, NO-1432, Ås, Norway
| | - Ana Sanz-Pérez
- Biodiversity and Animal Conservation Lab, Forest Science and Technology Centre of Catalonia (CTFC), 25280, Solsona, Spain
| | - Barbara Zimmermann
- Faculty of Applied Ecology, Agricultural Sciences and Biotechnology, Inland Norway University of Applied Sciences, Evenstad, NO-2480, Koppang, Norway
| | - Camilla Wikenros
- Grimsӧ Wildlife Research Station, Department of Ecology, Swedish University of Agricultural Sciences, SE-730 91, Riddarhyttan, Sweden
| | - Petter Wabakken
- Faculty of Applied Ecology, Agricultural Sciences and Biotechnology, Inland Norway University of Applied Sciences, Evenstad, NO-2480, Koppang, Norway
| | - Jonas Kindberg
- Norwegian Institute for Nature Research, NO-7485, Trondheim, Norway.,Department of Wildlife, Fish, and Environmental Studies, Swedish University of Agricultural Sciences, SE-901 83, Umea, Sweden
| | - Jon E Swenson
- Faculty of Environmental Sciences and Natural Resource Management, Norwegian University of Life Sciences, Post box 5003, NO-1432, Ås, Norway
| | - Håkan Sand
- Grimsӧ Wildlife Research Station, Department of Ecology, Swedish University of Agricultural Sciences, SE-730 91, Riddarhyttan, Sweden
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16
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How range residency and long-range perception change encounter rates. J Theor Biol 2020; 498:110267. [PMID: 32275984 DOI: 10.1016/j.jtbi.2020.110267] [Citation(s) in RCA: 21] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/23/2019] [Revised: 03/18/2020] [Accepted: 04/02/2020] [Indexed: 11/22/2022]
Abstract
Encounter rates link movement strategies to intra- and inter-specific interactions, and therefore translate individual movement behavior into higher-level ecological processes. Indeed, a large body of interacting population theory rests on the law of mass action, which can be derived from assumptions of Brownian motion in an enclosed container with exclusively local perception. These assumptions imply completely uniform space use, individual home ranges equivalent to the population range, and encounter dependent on movement paths actually crossing. Mounting empirical evidence, however, suggests that animals use space non-uniformly, occupy home ranges substantially smaller than the population range, and are often capable of nonlocal perception. Here, we explore how these empirically supported behaviors change pairwise encounter rates. Specifically, we derive novel analytical expressions for encounter rates under Ornstein-Uhlenbeck motion, which features non-uniform space use and allows individual home ranges to differ from the population range. We compare OU-based encounter predictions to those of Reflected Brownian Motion, from which the law of mass action can be derived. For both models, we further explore how the interplay between the scale of perception and home-range size affects encounter rates. We find that neglecting realistic movement and perceptual behaviors can lead to systematic, non-negligible biases in encounter-rate predictions.
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17
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Wang Y, Blackwell PG, Merkle JA, Potts JR. Continuous time resource selection analysis for moving animals. Methods Ecol Evol 2019. [DOI: 10.1111/2041-210x.13259] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Yi‐Shan Wang
- School of Mathematics and Statistics University of Sheffield Sheffield UK
| | - Paul G. Blackwell
- School of Mathematics and Statistics University of Sheffield Sheffield UK
| | - Jerod A. Merkle
- Wyoming Cooperative Research Unit and Department of Zoology and Physiology University of Wyoming Laramie WY
| | - Jonathan R. Potts
- School of Mathematics and Statistics University of Sheffield Sheffield UK
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18
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Schlägel UE, Signer J, Herde A, Eden S, Jeltsch F, Eccard JA, Dammhahn M. Estimating interactions between individuals from concurrent animal movements. Methods Ecol Evol 2019. [DOI: 10.1111/2041-210x.13235] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Ulrike E. Schlägel
- Department of Plant Ecology and Nature Conservation University of Potsdam Potsdam‐Golm Germany
| | - Johannes Signer
- Faculty of Forest Science and Forest Ecology University of Goettingen Göttingen Germany
| | - Antje Herde
- Department of Plant Ecology and Nature Conservation University of Potsdam Potsdam‐Golm Germany
| | - Sophie Eden
- Animal Ecology University of Potsdam Potsdam Germany
| | - Florian Jeltsch
- Department of Plant Ecology and Nature Conservation University of Potsdam Potsdam‐Golm Germany
- Berlin‐Brandenburg Institute of Advanced Biodiversity Research (BBIB) Berlin Germany
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19
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Spatial Memory and Taxis-Driven Pattern Formation in Model Ecosystems. Bull Math Biol 2019; 81:2725-2747. [PMID: 31165407 PMCID: PMC6612323 DOI: 10.1007/s11538-019-00626-9] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Accepted: 05/27/2019] [Indexed: 02/06/2023]
Abstract
Mathematical models of spatial population dynamics typically focus on the interplay between dispersal events and birth/death processes. However, for many animal communities, significant arrangement in space can occur on shorter timescales, where births and deaths are negligible. This phenomenon is particularly prevalent in populations of larger, vertebrate animals who often reproduce only once per year or less. To understand spatial arrangements of animal communities on such timescales, we use a class of diffusion-taxis equations for modelling inter-population movement responses between [Formula: see text] populations. These systems of equations incorporate the effect on animal movement of both the current presence of other populations and the memory of past presence encoded either in the environment or in the minds of animals. We give general criteria for the spontaneous formation of both stationary and oscillatory patterns, via linear pattern formation analysis. For [Formula: see text], we classify completely the pattern formation properties using a combination of linear analysis and nonlinear energy functionals. In this case, the only patterns that can occur asymptotically in time are stationary. However, for [Formula: see text], oscillatory patterns can occur asymptotically, giving rise to a sequence of period-doubling bifurcations leading to patterns with no obvious regularity, a hallmark of chaos. Our study highlights the importance of understanding between-population animal movement for understanding spatial species distributions, something that is typically ignored in species distribution modelling, and so develops a new paradigm for spatial population dynamics.
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20
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Joo R, Etienne MP, Bez N, Mahévas S. Metrics for describing dyadic movement: a review. MOVEMENT ECOLOGY 2018; 6:26. [PMID: 30607247 PMCID: PMC6307229 DOI: 10.1186/s40462-018-0144-2] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 08/17/2018] [Accepted: 12/02/2018] [Indexed: 06/09/2023]
Abstract
In movement ecology, the few works that have taken collective behaviour into account are data-driven and rely on simplistic theoretical assumptions, relying in metrics that may or may not be measuring what is intended. In the present paper, we focus on pairwise joint-movement behaviour, where individuals move together during at least a segment of their path. We investigate the adequacy of twelve metrics introduced in previous works for assessing joint movement by analysing their theoretical properties and confronting them with contrasting case scenarios. Two criteria are taken into account for review of those metrics: 1) practical use, and 2) dependence on parameters and underlying assumptions. When analysing the similarities between the metrics as defined, we show how some of them can be expressed using general mathematical forms. In addition, we evaluate the ability of each metric to assess specific aspects of joint-movement behaviour: proximity (closeness in space-time) and coordination (synchrony) in direction and speed. We found that some metrics are better suited to assess proximity and others are more sensitive to coordination. To help readers choose metrics, we elaborate a graphical representation of the metrics in the coordination and proximity space based on our results, and give a few examples of proximity and coordination focus in different movement studies.
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Affiliation(s)
- Rocio Joo
- Department of Wildlife Ecology and Conservation, Fort Lauderdale Research and Education Center, University of Florida, 3205 College Avenue, Davie, Florida, 33314 USA
- IFREMER, Ecologie et Modèles pour l’Halieutique, BP 21105, Nantes Cedex 03, 44311 France
| | | | - Nicolas Bez
- MARBEC, IRD, Ifremer, CNRS, Univ Montpellier, Sète, France
| | - Stéphanie Mahévas
- IFREMER, Ecologie et Modèles pour l’Halieutique, BP 21105, Nantes Cedex 03, 44311 France
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21
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Michelot T, Blackwell PG, Matthiopoulos J. Linking resource selection and step selection models for habitat preferences in animals. Ecology 2018; 100:e02452. [DOI: 10.1002/ecy.2452] [Citation(s) in RCA: 16] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 04/21/2018] [Revised: 05/30/2018] [Accepted: 06/24/2018] [Indexed: 11/08/2022]
Affiliation(s)
- Théo Michelot
- School of Mathematics and Statistics University of Sheffield Hicks Building, Hounsfield Road Sheffield S37RH UK
| | - Paul G. Blackwell
- School of Mathematics and Statistics University of Sheffield Hicks Building, Hounsfield Road Sheffield S37RH UK
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22
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Westley PAH, Berdahl AM, Torney CJ, Biro D. Collective movement in ecology: from emerging technologies to conservation and management. Philos Trans R Soc Lond B Biol Sci 2018; 373:20170004. [PMID: 29581389 PMCID: PMC5882974 DOI: 10.1098/rstb.2017.0004] [Citation(s) in RCA: 46] [Impact Index Per Article: 6.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 02/09/2018] [Indexed: 01/19/2023] Open
Abstract
Recent advances in technology and quantitative methods have led to the emergence of a new field of study that stands to link insights of researchers from two closely related, but often disconnected disciplines: movement ecology and collective animal behaviour. To date, the field of movement ecology has focused on elucidating the internal and external drivers of animal movement and the influence of movement on broader ecological processes. Typically, tracking and/or remote sensing technology is employed to study individual animals in natural conditions. By contrast, the field of collective behaviour has quantified the significant role social interactions play in the decision-making of animals within groups and, to date, has predominantly relied on controlled laboratory-based studies and theoretical models owing to the constraints of studying interacting animals in the field. This themed issue is intended to formalize the burgeoning field of collective movement ecology which integrates research from both movement ecology and collective behaviour. In this introductory paper, we set the stage for the issue by briefly examining the approaches and current status of research in these areas. Next, we outline the structure of the theme issue and describe the obstacles collective movement researchers face, from data acquisition in the field to analysis and problems of scale, and highlight the key contributions of the assembled papers. We finish by presenting research that links individual and broad-scale ecological and evolutionary processes to collective movement, and finally relate these concepts to emerging challenges for the management and conservation of animals on the move in a world that is increasingly impacted by human activity.This article is part of the theme issue 'Collective movement ecology'.
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Affiliation(s)
- Peter A H Westley
- Department of Fisheries, University of Alaska Fairbanks, Fairbanks, AK 99775, USA
| | - Andrew M Berdahl
- Santa Fe Institute, Santa Fe, NM 87501, USA
- School of Aquatic & Fishery Sciences, University of Washington, Seattle, WA 98195, USA
| | - Colin J Torney
- School of Mathematics and Statistics, University of Glasgow, Glasgow G12 8SQ, UK
| | - Dora Biro
- Department of Zoology, University of Oxford, Oxford OX1 3PS, UK
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23
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Del Mar Delgado M, Miranda M, Alvarez SJ, Gurarie E, Fagan WF, Penteriani V, di Virgilio A, Morales JM. The importance of individual variation in the dynamics of animal collective movements. Philos Trans R Soc Lond B Biol Sci 2018; 373:20170008. [PMID: 29581393 PMCID: PMC5882978 DOI: 10.1098/rstb.2017.0008] [Citation(s) in RCA: 50] [Impact Index Per Article: 7.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/11/2017] [Indexed: 11/12/2022] Open
Abstract
Animal collective movements are a key example of a system that links two clearly defined levels of organization: the individual and the group. Most models investigating collective movements have generated coherent collective behaviours without the inclusion of individual variability. However, new individual-based models, together with emerging empirical information, emphasize that within-group heterogeneity may strongly influence collective movement behaviour. Here we (i) review the empirical evidence for individual variation in animal collective movements, (ii) explore how theoretical investigations have represented individual heterogeneity when modelling collective movements and (iii) present a model to show how within-group heterogeneity influences the collective properties of a group. Our review underscores the need to consider variability at the level of the individual to improve our understanding of how individual decision rules lead to emergent movement patterns, and also to yield better quantitative predictions of collective behaviour.This article is part of the theme issue 'Collective movement ecology'.
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Affiliation(s)
- Maria Del Mar Delgado
- Research Unit of Biodiversity (UMIB, UO-CSIC-PA), Oviedo University, Campus Mieres, 33600 Mieres, Spain
| | - Maria Miranda
- Research Unit of Biodiversity (UMIB, UO-CSIC-PA), Oviedo University, Campus Mieres, 33600 Mieres, Spain
| | - Silvia J Alvarez
- Department of Biology, University of Maryland, 1210 Biology-Psychology Building, College Park, MD 20742, USA
- Wildlife Conservation Society, Carrera 7 No. 82-66, Bogota, Colombia
| | - Eliezer Gurarie
- Department of Biology, University of Maryland, 1210 Biology-Psychology Building, College Park, MD 20742, USA
| | - William F Fagan
- Department of Biology, University of Maryland, 1210 Biology-Psychology Building, College Park, MD 20742, USA
| | - Vincenzo Penteriani
- Research Unit of Biodiversity (UMIB, UO-CSIC-PA), Oviedo University, Campus Mieres, 33600 Mieres, Spain
- Pyrenean Institute of Ecology (IPE), CSIC, Avda. Montañana 1005, 50059, Zaragoza, Spain
| | - Agustina di Virgilio
- Ecotono, INIBIOMA-CONICET, Universidad Nacional del Camahue, Quintral 1250, Bariloche 8400, Argentina
| | - Juan Manuel Morales
- Ecotono, INIBIOMA-CONICET, Universidad Nacional del Camahue, Quintral 1250, Bariloche 8400, Argentina
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24
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Mokross K, Potts JR, Rutt CL, Stouffer PC. What can mixed‐species flock movement tell us about the value of Amazonian secondary forests? Insights from spatial behavior. Biotropica 2018. [DOI: 10.1111/btp.12557] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Karl Mokross
- Departamento de Ecologia Universidade Estadual Paulista ‘Júlio de Mesquita Filho’ Av. 24‐A, 1515, Bela Vista 13506‐900 Rio Claro SP Brasil
- School of Renewable Natural Resources Louisiana State University 227 RNR building Baton Rouge LA 70803‐6202 USA
- Biological Dynamics of Forest Fragments Project Instituto Nacional de Pesquisas da Amazônia Manaus 69011 Amazonas Brazil
| | - Jonathan R. Potts
- School of Mathematics and Statistics University of Sheffield G27c Hicks Building, Hounsfield Road Sheffield UK
| | - Cameron L. Rutt
- School of Renewable Natural Resources Louisiana State University 227 RNR building Baton Rouge LA 70803‐6202 USA
- Biological Dynamics of Forest Fragments Project Instituto Nacional de Pesquisas da Amazônia Manaus 69011 Amazonas Brazil
| | - Philip C. Stouffer
- School of Renewable Natural Resources Louisiana State University 227 RNR building Baton Rouge LA 70803‐6202 USA
- Biological Dynamics of Forest Fragments Project Instituto Nacional de Pesquisas da Amazônia Manaus 69011 Amazonas Brazil
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25
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Potts JR, Lewis MA. How memory of direct animal interactions can lead to territorial pattern formation. J R Soc Interface 2017; 13:rsif.2016.0059. [PMID: 27146687 DOI: 10.1098/rsif.2016.0059] [Citation(s) in RCA: 36] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/20/2016] [Accepted: 04/07/2016] [Indexed: 11/12/2022] Open
Abstract
Mechanistic home range analysis (MHRA) is a highly effective tool for understanding spacing patterns of animal populations. It has hitherto focused on populations where animals defend their territories by communicating indirectly, e.g. via scent marks. However, many animal populations defend their territories using direct interactions, such as ritualized aggression. To enable application of MHRA to such populations, we construct a model of direct territorial interactions, using linear stability analysis and energy methods to understand when territorial patterns may form. We show that spatial memory of past interactions is vital for pattern formation, as is memory of 'safe' places, where the animal has visited but not suffered recent territorial encounters. Additionally, the spatial range over which animals make decisions to move is key to understanding the size and shape of their resulting territories. Analysis using energy methods, on a simplified version of our system, shows that stability in the nonlinear system corresponds well to predictions of linear analysis. We also uncover a hysteresis in the process of territory formation, so that formation may depend crucially on initial space-use. Our analysis, in one dimension and two dimensions, provides mathematical groundwork required for extending MHRA to situations where territories are defended by direct encounters.
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Affiliation(s)
- Jonathan R Potts
- School of Mathematics and Statistics, University of Sheffield, Sheffield, UK
| | - Mark A Lewis
- Centre for Mathematical Biology, Department of Mathematical and Statistical Sciences, University of Alberta, 632 CAB, Edmonton, Alberta, Canada T6G 2G1 Department of Biological Sciences, University of Alberta, Edmonton, Canada
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26
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Potts JR, Petrovskii SV. Fortune favours the brave: Movement responses shape demographic dynamics in strongly competing populations. J Theor Biol 2017; 420:190-199. [DOI: 10.1016/j.jtbi.2017.03.011] [Citation(s) in RCA: 12] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2016] [Revised: 02/20/2017] [Accepted: 03/10/2017] [Indexed: 11/25/2022]
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27
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Wang YS, Potts JR. Partial differential equation techniques for analysing animal movement: A comparison of different methods. J Theor Biol 2017; 416:52-67. [PMID: 28063843 DOI: 10.1016/j.jtbi.2017.01.002] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2016] [Revised: 11/21/2016] [Accepted: 01/03/2017] [Indexed: 12/01/2022]
Abstract
Recent advances in animal tracking have allowed us to uncover the drivers of movement in unprecedented detail. This has enabled modellers to construct ever more realistic models of animal movement, which aid in uncovering detailed patterns of space use in animal populations. Partial differential equations (PDEs) provide a popular tool for mathematically analysing such models. However, their construction often relies on simplifying assumptions which may greatly affect the model outcomes. Here, we analyse the effect of various PDE approximations on the analysis of some simple movement models, including a biased random walk, central-place foraging processes and movement in heterogeneous landscapes. Perhaps the most commonly-used PDE method dates back to a seminal paper of Patlak from 1953. However, our results show that this can be a very poor approximation in even quite simple models. On the other hand, more recent methods, based on transport equation formalisms, can provide more accurate results, as long as the kernel describing the animal's movement is sufficiently smooth. When the movement kernel is not smooth, we show that both the older and newer methods can lead to quantitatively misleading results. Our detailed analysis will aid future researchers in the appropriate choice of PDE approximation for analysing models of animal movement.
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Affiliation(s)
- Yi-Shan Wang
- School of Mathematics and Statistics, University of Sheffield, Hicks Building, Hounsfield Road, Sheffield S3 7RH, UK.
| | - Jonathan R Potts
- School of Mathematics and Statistics, University of Sheffield, Hicks Building, Hounsfield Road, Sheffield S3 7RH, UK.
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28
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Strandburg-Peshkin A, Farine DR, Crofoot MC, Couzin ID. Habitat and social factors shape individual decisions and emergent group structure during baboon collective movement. eLife 2017; 6:e19505. [PMID: 28139196 PMCID: PMC5283833 DOI: 10.7554/elife.19505] [Citation(s) in RCA: 85] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2016] [Accepted: 12/19/2016] [Indexed: 01/27/2023] Open
Abstract
For group-living animals traveling through heterogeneous landscapes, collective movement can be influenced by both habitat structure and social interactions. Yet research in collective behavior has largely neglected habitat influences on movement. Here we integrate simultaneous, high-resolution, tracking of wild baboons within a troop with a 3-dimensional reconstruction of their habitat to identify key drivers of baboon movement. A previously unexplored social influence - baboons' preference for locations that other troop members have recently traversed - is the most important predictor of individual movement decisions. Habitat is shown to influence movement over multiple spatial scales, from long-range attraction and repulsion from the troop's sleeping site, to relatively local influences including road-following and a short-range avoidance of dense vegetation. Scaling to the collective level reveals a clear association between habitat features and the emergent structure of the group, highlighting the importance of habitat heterogeneity in shaping group coordination.
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Affiliation(s)
| | - Damien R Farine
- Department of Collective Behaviour, Max Planck Institute for Ornithology, Konstanz, Germany
- Department of Biology, Chair of Biodiversity and Collective Behaviour, University of Konstanz, Konstanz, Germany
- Department of Zoology, Edward Grey Institute of Field Ornithology, University of Oxford, Oxford, United Kingdom
| | - Margaret C Crofoot
- Department of Anthropology, University of California, Davis, Davis, United States
- Animal Behaviour Graduate Group, University of California, Davis, Davis, United States
- Smithsonian Tropical Research Institute, Panama
| | - Iain D Couzin
- Department of Collective Behaviour, Max Planck Institute for Ornithology, Konstanz, Germany
- Department of Biology, Chair of Biodiversity and Collective Behaviour, University of Konstanz, Konstanz, Germany
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29
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Marchand P, Garel M, Bourgoin G, Duparc A, Dubray D, Maillard D, Loison A. Combining familiarity and landscape features helps break down the barriers between movements and home ranges in a non-territorial large herbivore. J Anim Ecol 2017; 86:371-383. [DOI: 10.1111/1365-2656.12616] [Citation(s) in RCA: 21] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2016] [Accepted: 11/26/2016] [Indexed: 12/01/2022]
Affiliation(s)
- Pascal Marchand
- Office National de la Chasse et de la Faune Sauvage, Unité Faune de Montagne; 147 route de Lodève, Les Portes du Soleil F-34990 Juvignac France
- Laboratoire d’Ecologie Alpine, CNRS UMR 5553, Centre Interdisciplinaire des Sciences de la Montagne; Université Savoie Mont-Blanc; Bâtiment Belledonne Ouest F-73376 Le Bourget-du-Lac France
- Office National de la Chasse et de la Faune Sauvage, Délégation Régionale Occitanie; 18 rue Jean Perrin, Actisud Bâtiment 12 F-31100 Toulouse France
| | - Mathieu Garel
- Office National de la Chasse et de la Faune Sauvage, Unité Faune de Montagne; 147 route de Lodève, Les Portes du Soleil F-34990 Juvignac France
| | - Gilles Bourgoin
- Laboratoire de parasitologie vétérinaire, VetAgro Sup - Campus Vétérinaire de Lyon; Université de Lyon; 1 avenue Bourgelat, BP 83 F-69280 Marcy l’Etoile France
- Laboratoire de Biométrie et Biologie Evolutive, CNRS UMR 5558; Université Lyon 1; F-69622 Villeurbanne France
| | - Antoine Duparc
- Office National de la Chasse et de la Faune Sauvage, Unité Faune de Montagne; 147 route de Lodève, Les Portes du Soleil F-34990 Juvignac France
- Laboratoire d’Ecologie Alpine, CNRS UMR 5553, Centre Interdisciplinaire des Sciences de la Montagne; Université Savoie Mont-Blanc; Bâtiment Belledonne Ouest F-73376 Le Bourget-du-Lac France
| | - Dominique Dubray
- Office National de la Chasse et de la Faune Sauvage, Unité Faune de Montagne; 147 route de Lodève, Les Portes du Soleil F-34990 Juvignac France
| | - Daniel Maillard
- Office National de la Chasse et de la Faune Sauvage, Unité Faune de Montagne; 147 route de Lodève, Les Portes du Soleil F-34990 Juvignac France
| | - Anne Loison
- Laboratoire d’Ecologie Alpine, CNRS UMR 5553, Centre Interdisciplinaire des Sciences de la Montagne; Université Savoie Mont-Blanc; Bâtiment Belledonne Ouest F-73376 Le Bourget-du-Lac France
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30
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Breed GA, Golson EA, Tinker MT. Predicting animal home‐range structure and transitions using a multistate Ornstein‐Uhlenbeck biased random walk. Ecology 2016; 98:32-47. [DOI: 10.1002/ecy.1615] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/09/2016] [Accepted: 09/19/2016] [Indexed: 11/09/2022]
Affiliation(s)
- Greg A. Breed
- Department of Biological Sciences University of Alberta Edmonton Alberta T6G 2E9 Canada
- Institute of Arctic Biology University of Alaska Fairbanks Alaska 99775 USA
| | - Emily A. Golson
- Moss Landing Marine Laboratories 8272 Moss Landing Road Moss Landing California 95039 USA
| | - M. Tim Tinker
- U.S. Geological Survey Western Ecological Research Center Santa Cruz Field Station 100 Shaffer Road Santa Cruz California 95060 USA
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31
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Cusack JJ, Dickman AJ, Kalyahe M, Rowcliffe JM, Carbone C, MacDonald DW, Coulson T. Revealing kleptoparasitic and predatory tendencies in an African mammal community using camera traps: a comparison of spatiotemporal approaches. OIKOS 2016. [DOI: 10.1111/oik.03403] [Citation(s) in RCA: 34] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Affiliation(s)
| | - Amy J. Dickman
- Dept of Zoology, The Recanati-Kaplan Centre, Wildlife Conservation Research Unit; Univ. of Oxford; Oxford UK
| | - Monty Kalyahe
- Leibniz Inst. for Zoo and Wildlife Research; Berlin Germany
| | | | - Chris Carbone
- Inst. of Zoology; Zoological Society of London; London UK
| | - David W. MacDonald
- Dept of Zoology, The Recanati-Kaplan Centre, Wildlife Conservation Research Unit; Univ. of Oxford; Oxford UK
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32
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Niu M, Blackwell PG, Skarin A. Modeling interdependent animal movement in continuous time. Biometrics 2016; 72:315-24. [PMID: 26812666 DOI: 10.1111/biom.12454] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2014] [Revised: 10/01/2015] [Accepted: 10/01/2015] [Indexed: 11/28/2022]
Abstract
This article presents a new approach to modeling group animal movement in continuous time. The movement of a group of animals is modeled as a multivariate Ornstein Uhlenbeck diffusion process in a high-dimensional space. Each individual of the group is attracted to a leading point which is generally unobserved, and the movement of the leading point is also an Ornstein Uhlenbeck process attracted to an unknown attractor. The Ornstein Uhlenbeck bridge is applied to reconstruct the location of the leading point. All movement parameters are estimated using Markov chain Monte Carlo sampling, specifically a Metropolis Hastings algorithm. We apply the method to a small group of simultaneously tracked reindeer, Rangifer tarandus tarandus, showing that the method detects dependency in movement between individuals.
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Affiliation(s)
- Mu Niu
- School of Mathematics & Statistics, University of Sheffield, Sheffield S3 7RH, UK
| | - Paul G Blackwell
- School of Mathematics & Statistics, University of Sheffield, Sheffield S3 7RH, UK
| | - Anna Skarin
- Department of Animal Nutrition and Management, Swedish University of Agricultural Sciences, Uppsala, Sweden
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33
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Avgar T, Potts JR, Lewis MA, Boyce MS. Integrated step selection analysis: bridging the gap between resource selection and animal movement. Methods Ecol Evol 2016. [DOI: 10.1111/2041-210x.12528] [Citation(s) in RCA: 216] [Impact Index Per Article: 24.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Affiliation(s)
- Tal Avgar
- Department of Biological Sciences University of Alberta Edmonton AB T6G 2G1 Canada
| | - Jonathan R. Potts
- School of Mathematics and Statistics University of Sheffield Sheffield S3 7RH UK
| | - Mark A. Lewis
- Department of Biological Sciences University of Alberta Edmonton AB T6G 2G1 Canada
- Department of Mathematical and Statistical Sciences University of Alberta Edmonton AB T6G 2G1 Canada
| | - Mark S. Boyce
- Department of Biological Sciences University of Alberta Edmonton AB T6G 2G1 Canada
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Russell JC, Hanks EM, Haran M. Dynamic Models of Animal Movement with Spatial Point Process Interactions. JOURNAL OF AGRICULTURAL BIOLOGICAL AND ENVIRONMENTAL STATISTICS 2015. [DOI: 10.1007/s13253-015-0219-0] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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35
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Dalziel BD, Corre ML, Côté SD, Ellner SP. Detecting collective behaviour in animal relocation data, with application to migrating caribou. Methods Ecol Evol 2015. [DOI: 10.1111/2041-210x.12437] [Citation(s) in RCA: 17] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Affiliation(s)
- Benjamin D. Dalziel
- Department of Ecology and Evolutionary Biology Cornell University Ithaca NY USA
| | - Mael Le Corre
- Department of Biology University of Laval Quebec QC Canada
| | - Steeve D. Côté
- Department of Biology University of Laval Quebec QC Canada
| | - Stephen P. Ellner
- Department of Ecology and Evolutionary Biology Cornell University Ithaca NY USA
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36
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Kays R, Crofoot MC, Jetz W, Wikelski M. ECOLOGY. Terrestrial animal tracking as an eye on life and planet. Science 2015; 348:aaa2478. [PMID: 26068858 DOI: 10.1126/science.aaa2478] [Citation(s) in RCA: 704] [Impact Index Per Article: 70.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
Abstract
Moving animals connect our world, spreading pollen, seeds, nutrients, and parasites as they go about the their daily lives. Recent integration of high-resolution Global Positioning System and other sensors into miniaturized tracking tags has dramatically improved our ability to describe animal movement. This has created opportunities and challenges that parallel big data transformations in other fields and has rapidly advanced animal ecology and physiology. New analytical approaches, combined with remotely sensed or modeled environmental information, have opened up a host of new questions on the causes of movement and its consequences for individuals, populations, and ecosystems. Simultaneous tracking of multiple animals is leading to new insights on species interactions and, scaled up, may enable distributed monitoring of both animals and our changing environment.
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Affiliation(s)
- Roland Kays
- North Carolina Museum of Natural Sciences, Raleigh, NC, USA. Department of Forestry and Environmental Resources, North Carolina State University, Raleigh, NC, USA. Smithsonian Tropical Research Institute, Balboa, Republic of Panama.
| | - Margaret C Crofoot
- Smithsonian Tropical Research Institute, Balboa, Republic of Panama. Department of Anthropology, University of California, Davis, Davis, CA, USA. Department of Migration and Immuno-Ecology, Max Planck Institute for Ornithology, Radolfzell, Germany
| | - Walter Jetz
- Department of Ecology and Evolutionary Biology, Yale University, New Haven, CT 06520, USA. Department of Life Sciences, Imperial College London, Silwood Park Campus, Ascot SL5 7PY, UK
| | - Martin Wikelski
- Smithsonian Tropical Research Institute, Balboa, Republic of Panama. Department of Migration and Immuno-Ecology, Max Planck Institute for Ornithology, Radolfzell, Germany. Department of Biology, University of Konstanz, Konstanz, Germany
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37
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Topaz CM, Ziegelmeier L, Halverson T. Topological data analysis of biological aggregation models. PLoS One 2015; 10:e0126383. [PMID: 25970184 PMCID: PMC4430537 DOI: 10.1371/journal.pone.0126383] [Citation(s) in RCA: 53] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2014] [Accepted: 04/01/2015] [Indexed: 11/18/2022] Open
Abstract
We apply tools from topological data analysis to two mathematical models inspired by biological aggregations such as bird flocks, fish schools, and insect swarms. Our data consists of numerical simulation output from the models of Vicsek and D'Orsogna. These models are dynamical systems describing the movement of agents who interact via alignment, attraction, and/or repulsion. Each simulation time frame is a point cloud in position-velocity space. We analyze the topological structure of these point clouds, interpreting the persistent homology by calculating the first few Betti numbers. These Betti numbers count connected components, topological circles, and trapped volumes present in the data. To interpret our results, we introduce a visualization that displays Betti numbers over simulation time and topological persistence scale. We compare our topological results to order parameters typically used to quantify the global behavior of aggregations, such as polarization and angular momentum. The topological calculations reveal events and structure not captured by the order parameters.
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Affiliation(s)
- Chad M. Topaz
- Department of Mathematics, Statistics, and Computer Science, Macalester College, Saint Paul, Minnesota, United States of America
- * E-mail:
| | - Lori Ziegelmeier
- Department of Mathematics, Statistics, and Computer Science, Macalester College, Saint Paul, Minnesota, United States of America
| | - Tom Halverson
- Department of Mathematics, Statistics, and Computer Science, Macalester College, Saint Paul, Minnesota, United States of America
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38
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Painter KJ, Bloomfield JM, Sherratt JA, Gerisch A. A Nonlocal Model for Contact Attraction and Repulsion in Heterogeneous Cell Populations. Bull Math Biol 2015; 77:1132-65. [DOI: 10.1007/s11538-015-0080-x] [Citation(s) in RCA: 45] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2014] [Accepted: 04/01/2015] [Indexed: 01/31/2023]
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Potts JR, Lewis MA. Territorial pattern formation in the absence of an attractive potential. J Math Biol 2015; 72:25-46. [PMID: 25822451 DOI: 10.1007/s00285-015-0881-4] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/28/2014] [Revised: 03/04/2015] [Indexed: 11/29/2022]
Abstract
Territoriality is a phenomenon exhibited throughout nature. On the individual level, it is the processes by which organisms exclude others of the same species from certain parts of space. On the population level, it is the segregation of space into separate areas, each used by subsections of the population. Proving mathematically that such individual-level processes can cause observed population-level patterns to form is necessary for linking these two levels of description in a non-speculative way. Previous mathematical analysis has relied upon assuming animals are attracted to a central area. This can either be a fixed geographical point, such as a den- or nest-site, or a region where they have previously visited. However, recent simulation-based studies suggest that this attractive potential is not necessary for territorial pattern formation. Here, we construct a partial differential equation (PDE) model of territorial interactions based on the individual-based model (IBM) from those simulation studies. The resulting PDE does not rely on attraction to spatial locations, but purely on conspecific avoidance, mediated via scent-marking. We show analytically that steady-state patterns can form, as long as (i) the scent does not decay faster than it takes the animal to traverse the terrain, and (ii) the spatial scale over which animals detect scent is incorporated into the PDE. As part of the analysis, we develop a general method for taking the PDE limit of an IBM that avoids destroying any intrinsic spatial scale in the underlying behavioral decisions.
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Affiliation(s)
- Jonathan R Potts
- School of Mathematics and Statistics, University of Sheffield, Sheffield, UK.
| | - Mark A Lewis
- Department of Mathematical and Statistical Sciences, Centre for Mathematical Biology, University of Alberta, Edmonton, Canada
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40
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Hanks EM, Hooten MB, Alldredge MW. Continuous-time discrete-space models for animal movement. Ann Appl Stat 2015. [DOI: 10.1214/14-aoas803] [Citation(s) in RCA: 56] [Impact Index Per Article: 5.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2022]
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Potts JR, Auger-Méthé M, Mokross K, Lewis MA. A generalized residual technique for analysing complex movement models using earth mover's distance. Methods Ecol Evol 2014. [DOI: 10.1111/2041-210x.12253] [Citation(s) in RCA: 15] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/20/2023]
Affiliation(s)
- Jonathan R. Potts
- Centre for Mathematical Biology; Department of Mathematical and Statistical Sciences; University of Alberta; Edmonton AB Canada
- School of Mathematics and Statistics; University of Sheffield; Sheffield UK
| | - Marie Auger-Méthé
- Centre for Mathematical Biology; Department of Mathematical and Statistical Sciences; University of Alberta; Edmonton AB Canada
- Department of Biological Sciences; University of Alberta; Edmonton AB Canada
| | - Karl Mokross
- School of Renewable Natural Resources; Louisiana State University Agricultural Center; Baton Rouge LA 70803 USA
- Projeto Dinâmica Biológica de Fragmentos Florestais; INPA; Av. André Araújo 2936 Petrópolis Manaus 69083-000 Brazil
| | - Mark A. Lewis
- Centre for Mathematical Biology; Department of Mathematical and Statistical Sciences; University of Alberta; Edmonton AB Canada
- Department of Biological Sciences; University of Alberta; Edmonton AB Canada
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42
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Potts JR, Lewis MA. How do animal territories form and change? Lessons from 20 years of mechanistic modelling. Proc Biol Sci 2014; 281:20140231. [PMID: 24741017 PMCID: PMC4043092 DOI: 10.1098/rspb.2014.0231] [Citation(s) in RCA: 71] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2014] [Accepted: 03/24/2014] [Indexed: 11/27/2022] Open
Abstract
Territory formation is ubiquitous throughout the animal kingdom. At the individual level, various behaviours attempt to exclude conspecifics from regions of space. At the population level, animals often segregate into distinct territorial areas. Consequently, it should be possible to derive territorial patterns from the underlying behavioural processes of animal movements and interactions. Such derivations are an important element in the development of an ecological theory that can predict the effects of changing conditions on territorial populations. Here, we review the approaches developed over the past 20 years or so, which go under the umbrella of 'mechanistic territorial models'. We detail the two main strands to this research: partial differential equations and individual-based approaches, showing what each has offered to our understanding of territoriality and how they can be unified. We explain how they are related to other approaches to studying territories and home ranges, and point towards possible future directions.
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Affiliation(s)
- Jonathan R. Potts
- Department of Mathematical and Statistical
Sciences, Centre for Mathematical Biology, University of
Alberta, Edmonton,
Alberta, CanadaT6G 2G1
| | - Mark A. Lewis
- Department of Mathematical and Statistical
Sciences, Centre for Mathematical Biology, University of
Alberta, Edmonton,
Alberta, CanadaT6G 2G1
- Department of Biological Sciences,
University of Alberta, Edmonton,
Alberta, CanadaT6G 2G1
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