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Rohrbach S, Gkoutselis G, Hink L, Weig AR, Obst M, Diekmann A, Ho A, Rambold G, Horn MA. Microplastic polymer properties as deterministic factors driving terrestrial plastisphere microbiome assembly and succession in the field. Environ Microbiol 2023; 25:2681-2697. [PMID: 36224114 DOI: 10.1111/1462-2920.16234] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Accepted: 10/04/2022] [Indexed: 11/28/2022]
Abstract
Environmental microplastic (MP) is ubiquitous in aquatic and terrestrial ecosystems providing artificial habitats for microbes. Mechanisms of MP colonization, MP polymer impacts, and effects on soil microbiomes are largely unknown in terrestrial systems. Therefore, we experimentally tested the hypothesis that MP polymer type is an important deterministic factor affecting MP community assembly by incubating common MP polymer types in situ in landfill soil for 14 months. 16S rRNA gene amplicon sequencing indicated that MP polymers have specific impacts on plastisphere microbiomes, which are subsets of the soil microbiome. Chloroflexota, Gammaproteobacteria, certain Nitrososphaerota, and Nanoarchaeota explained differences among MP polymers and time points. Plastisphere microbial community composition derived from different MP diverged over time and was enriched in potential pathogens. PICRUSt predictions of pathway abundances and quantitative PCR of functional marker genes indicated that MP polymers exerted an ambivalent effect on genetic potentials of biogeochemical cycles. Overall, the data indicate that (i) polymer type as deterministic factor rather than stochastic factors drives plastisphere community assembly, (ii) MP impacts greenhouse gas metabolism, xenobiotic degradation and pathogen distribution, and (iii) MP serves as an ideal model system for studying fundamental questions in microbial ecology such as community assembly mechanisms in terrestrial environments.
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Affiliation(s)
- Stephan Rohrbach
- Institute of Microbiology, Leibniz University Hannover, Hannover, Germany
| | | | - Linda Hink
- Institute of Microbiology, Leibniz University Hannover, Hannover, Germany
| | - Alfons R Weig
- Genomics and Bioinformatics, University of Bayreuth, Bayreuth, Germany
| | - Martin Obst
- Experimental Biogeochemistry, BayCEER, University of Bayreuth, Bayreuth, Germany
| | - Astrid Diekmann
- Deutsches Institut für Kautschuktechnologie e.V., Hannover, Germany
| | - Adrian Ho
- Institute of Microbiology, Leibniz University Hannover, Hannover, Germany
| | - Gerhard Rambold
- Department of Mycology, University of Bayreuth, Bayreuth, Germany
| | - Marcus A Horn
- Institute of Microbiology, Leibniz University Hannover, Hannover, Germany
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2
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Chen Y, Xu Y, Ma Y, Lin J, Ruan A. Microbial community structure and its driving mechanisms in the Hangbu estuary of Chaohu Lake under different sedimentary areas. ENVIRONMENTAL RESEARCH 2023; 238:117153. [PMID: 37726029 DOI: 10.1016/j.envres.2023.117153] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/25/2023] [Revised: 09/02/2023] [Accepted: 09/13/2023] [Indexed: 09/21/2023]
Abstract
Estuaries are known for their high ecological diversity and biological productivity. Sediment microorganisms, as crucial components of estuarine ecosystems, play a pivotal role in reflecting the intricate and dynamic ecological niches. However, our research on microbial community characteristics in estuarine ecosystems under different sedimentary types remains limited. In this study, we collected a total of 27 samples from three sampling sites at Hangbu estuary in Chaohu Lake, and three sedimentary areas were classified based on the overlying water flow conditions and sediment particle properties to elucidate their microbial community structure, environmental drivers, assembly processes, and co-occurrence network characteristics. Our results showed significant differences in microbial community composition and diversity among three sedimentary areas. Redundancy analysis indicated that the differences in microbial community composition at the OTU level among the three sedimentary areas were mainly determined by nitrate-nitrogen, temperature, and water content. Phylogenetic bin-based null model analysis revealed that temperature was a key factor influencing deterministic processes among the three sedimentary areas, while stochastic processes predominantly governed the assembly of microbial communities. In addition, co-occurrence network analysis demonstrated that the network in the hydraulically driven sedimentary area of the lake, consisting mainly of medium and fine silt, had the highest complexity, stability, and cohesion, but was missing potential keystone taxa. The remaining two sedimentary areas had 5 and 8 potential keystone taxa, respectively. Overall, our study proposes the delineation of sedimentary types and comprehensively elucidates the microbial community characteristics under different sedimentary areas, providing a new perspective for studying sediment microbial community structure and helping future scholars systematically study ecological dynamics in estuaries.
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Affiliation(s)
- Yang Chen
- The National Key Laboratory of Water Disaster Prevention, Hohai University, Nanjing 210098, China; College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
| | - Yaofei Xu
- College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
| | - Yunmei Ma
- College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
| | - Jie Lin
- College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China
| | - Aidong Ruan
- The National Key Laboratory of Water Disaster Prevention, Hohai University, Nanjing 210098, China; College of Hydrology and Water Resources, Hohai University, Nanjing 210098, China.
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3
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Ren Z, Ye S, Li H, Huang X, Chen L, Cao S, Chen T. Biological Interactions and Environmental Influences Shift Microeukaryotes in Permafrost Active Layer Soil Across the Qinghai-Tibet Plateau. MICROBIAL ECOLOGY 2023; 86:2756-2769. [PMID: 37542537 DOI: 10.1007/s00248-023-02280-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2023] [Accepted: 07/27/2023] [Indexed: 08/07/2023]
Abstract
Permafrost active layer soils are harsh environments with thaw/freeze cycles and sub-zero temperatures, harboring diverse microorganisms. However, the distribution patterns, assembly mechanism, and driving forces of soil microeukaryotes in permafrost remain largely unknown. In this study, we investigated microeukaryotes in permafrost active layer across the Qinghai-Tibet Plateau (QTP) using 18S rRNA gene sequencing. The results showed that the microbial eukaryotic communities were dominated by Nematozoa, Ciliophora, Ascomycota, Cercozoa, Arthropoda, and Basidiomycota in terms of relative abundance and operational taxonomic unit (OTU) richness. Nematozoa had the highest relative abundance, while Ciliophora had the highest OTU richness. These phyla had strong interactions between each other. Their alpha diversity and community structure were differently influenced by the factors associated to location, climate, and soil properties, particularly the soil properties. Significant but weak distance-decay relationships with different slopes were established for the communities of these dominant phyla, except for Basidiomycota. According to the null model, community assemblies of Nematozoa and Cercozoa were dominated by heterogeneous selection, Ciliophora and Ascomycota were dominated by dispersal limitation, while Arthropoda and Basidiomycota were highly dominated by non-dominant processes. The assembly mechanisms can be jointly explained by biotic interactions, organism treats, and environmental influences. Modules in the co-occurrence network of the microeukaryotes were composed by members from different taxonomic groups. These modules also had interactions and responded to different environmental factors, within which, soil properties had strong influences on these modules. The results suggested the importance of biological interactions and soil properties in structuring microbial eukaryotic communities in permafrost active layer soil across the QTP.
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Affiliation(s)
- Ze Ren
- State Key Laboratory of Lake Science and Environment, Nanjing Institute of Geography and Limnology, Chinese Academy of Sciences, 73 Beijing East Road, Nanjing, 210008, China.
- Advanced Institute of Natural Sciences, Beijing Normal University, Zhuhai, 519087, China.
| | - Shudan Ye
- Faculty of Arts and Sciences, Beijing Normal University, Zhuhai, 519087, China
| | - Hongxuan Li
- Faculty of Arts and Sciences, Beijing Normal University, Zhuhai, 519087, China
| | - Xilei Huang
- Faculty of Arts and Sciences, Beijing Normal University, Zhuhai, 519087, China
| | - Luyao Chen
- Faculty of Arts and Sciences, Beijing Normal University, Zhuhai, 519087, China
| | - Shengkui Cao
- School of Geographical Science, Qinghai Normal University, Xining, 810008, China
| | - Tao Chen
- Center for Grassland Microbiome, State Key Laboratory of Grassland Agro-ecosystems, Lanzhou University, 768 Jiayuguan W Road, Lanzhou, 730020, China.
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4
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Gong X, Liu X, Li Y, Ma K, Song W, Zhou J, Tu Q. Distinct Ecological Processes Mediate Domain-Level Differentiation in Microbial Spatial Scaling. Appl Environ Microbiol 2023; 89:e0209622. [PMID: 36815790 PMCID: PMC10056974 DOI: 10.1128/aem.02096-22] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/14/2022] [Accepted: 01/26/2023] [Indexed: 02/24/2023] Open
Abstract
The spatial scaling of biodiversity, such as the taxa-area relationship (TAR) and distance-decay relationship (DDR), is a typical ecological pattern that is followed by both microbes and macrobes in natural ecosystems. Previous studies focusing on microbes mainly aimed to address whether and how different types of microbial taxa differ in spatial scaling patterns, leaving the underlying mechanisms largely untouched. In this study, the spatial scaling of different microbial domains and their associated ecological processes in an intertidal zone were comparatively investigated. The significant spatial scaling of biodiversity could be observed across all microbial domains, including archaea, bacteria, fungi, and protists. Among them, archaea and fungi were found with much stronger DDR slopes than those observed in bacteria and protists. For both TAR and DDR, rare subcommunities were mainly responsible for the observed spatial scaling patterns, except for the DDR of protists and bacteria. This was also evidenced by extending the TAR and DDR diversity metrics to Hill numbers. Further statistical analyses demonstrated that different microbial domains were influenced by different environmental factors and harbored distinct local community assembly processes. Of these, drift was mainly responsible for the compositional variations of bacteria and protists. Archaea were shaped by strong homogeneous selection, whereas fungi were more affected by dispersal limitation. Such differing ecological processes resulted in the domain-level differentiation of microbial spatial scaling. This study links ecological processes with microbial spatial scaling and provides novel mechanistic insights into the diversity patterns of microbes that belong to different trophic levels. IMPORTANCE As the most diverse and numerous life form on Earth, microorganisms play indispensable roles in natural ecological processes. Revealing their diversity patterns across space and through time is of essential importance to better understand the underlying ecological mechanisms controlling the distribution and assembly of microbial communities. However, the diversity patterns and their underlying ecological mechanisms for different microbial domains and/or trophic levels require further exploration. In this study, the spatial scaling of different microbial domains and their associated ecological processes in a mudflat intertidal zone were investigated. The results showed different spatial scaling patterns for different microbial domains. Different ecological processes underlie the domain-level differentiation of microbial spatial scaling. This study links ecological processes with microbial spatial scaling to provide novel mechanistic insights into the diversity patterns of microorganisms that belong to different trophic levels.
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Affiliation(s)
- Xiaofan Gong
- Institute of Marine Science and Technology, Shandong University, Qingdao, China
| | - Xia Liu
- Institute of Marine Science and Technology, Shandong University, Qingdao, China
| | - Yueyue Li
- Institute of Marine Science and Technology, Shandong University, Qingdao, China
| | - Kai Ma
- Institute of Marine Science and Technology, Shandong University, Qingdao, China
| | - Wen Song
- Institute of Marine Science and Technology, Shandong University, Qingdao, China
| | - Jiayin Zhou
- Institute of Marine Science and Technology, Shandong University, Qingdao, China
| | - Qichao Tu
- Institute of Marine Science and Technology, Shandong University, Qingdao, China
- Joint Lab for Ocean Research and Education at Dalhousie University, Shandong University and Xiamen University, Qingdao, China
- Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Guangzhou, China
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5
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Li S, Müller S. Ecological forces dictate microbial community assembly processes in bioreactor systems. Curr Opin Biotechnol 2023; 81:102917. [PMID: 36931023 DOI: 10.1016/j.copbio.2023.102917] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/22/2022] [Revised: 01/31/2023] [Accepted: 02/13/2023] [Indexed: 03/17/2023]
Abstract
Microbial communities are indispensable for future biotechnology to produce valuable platform chemicals and reduce the exploitation of fossil resources. Yet, the stability of microbial communities in classical continuous reactor setups is best brief or non-existent. This is due to ecological forces such as stochastic and deterministic properties of communities that contribute to rapid changes in structure and function to varying degrees. The review highlights the differences between these two properties, provides tools for their estimation, and gives an outlook on overcoming instabilities of microbial communities in biotechnological reactor systems.
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Affiliation(s)
- Shuang Li
- Helmholtz Centre for Environmental Research - UFZ, Department Environmental Microbiology, Permoserstr. 15, 04318 Leipzig, Germany
| | - Susann Müller
- Helmholtz Centre for Environmental Research - UFZ, Department Environmental Microbiology, Permoserstr. 15, 04318 Leipzig, Germany.
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6
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Maskell L, Alison J, Forbes N, Jarvis S, Robinson D, Siriwardena G, Wood C, Smart S. Inconsistent relationships between area, heterogeneity and plant species richness in temperate farmed landscapes. OIKOS 2023. [DOI: 10.1111/oik.09720] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/21/2023]
Affiliation(s)
| | | | - Neil Forbes
- RSPB, Lancaster Office 7.3.1. Cameron House, White Cross Estate Lancaster UK
| | | | | | | | - Claire Wood
- UK Centre for Ecology & Hydrology Lancaster UK
| | - Simon Smart
- UK Centre for Ecology & Hydrology Lancaster UK
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7
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Skouroliakou DI, Breton E, Irion S, Artigas LF, Christaki U. Stochastic and Deterministic Processes Regulate Phytoplankton Assemblages in a Temperate Coastal Ecosystem. Microbiol Spectr 2022; 10:e0242722. [PMID: 36222680 PMCID: PMC9769578 DOI: 10.1128/spectrum.02427-22] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/27/2022] [Accepted: 09/20/2022] [Indexed: 01/06/2023] Open
Abstract
Assessing the relative contributions of the interacting deterministic and stochastic ecological processes for phytoplankton community assembly is crucial in understanding and predicting community organization and succession at different temporal and spatial scales. In this study, we hypothesized that deterministic and stochastic ecological processes regulating phytoplankton, present seasonal and repeating patterns. This hypothesis was explored during a 5-year survey (287 samples) conducted at a small spatial scale (~15km) in a temperate coastal ecosystem (eastern English Channel). Microscopy and flow cytometry quantified phytoplankton abundance and biomass, while metabarcoding data allowed an extended evaluation of diversity and the exploration of the ecological processes regulating phytoplankton using null model analysis. Alpha diversity of phytoplankton was governed by the effect of environmental conditions (environmental filtering). Temporal community turnover (beta diversity) evidenced a consistent interannual pattern that determined the phytoplankton seasonal structure. In winter and early spring (from January to March), determinism (homogeneous selection) was the major process in the phytoplankton community assembly. The overall mean in the year was 38%. Stochastic processes (ecological drift) prevailed during the rest of the year from April to December, where the overall mean for the year was 55%. The maximum values were recorded in late spring and summer, which often presented recurrent and transient monospecific phytoplankton peaks. Overall, the prevalence of stochastic processes rendered less predictable seasonal dynamics of phytoplankton communities to future environmental change. IMPORTANCE While ecological deterministic processes are conducive to modeling, stochastic ones are far less predictable. Understanding the overall assembly processes of phytoplankton is critical in tracking and predicting future changes. The novelty of this study was that it addressed a long-posed question, on a pluriannual scale. Was seasonal phytoplankton succession influenced by deterministic processes (e.g., abiotic environment) or by stochastic ones (e.g., dispersal, or ecological drift)? Our results provided strong support for a seasonal and repeating pattern with stochastic processes (drift) prevailing during most of the year and periods with monospecific phytoplankton peaks.
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Affiliation(s)
| | - Elsa Breton
- University Littoral Côte d’Opale, CNRS, Wimereux, France
| | - Solène Irion
- University Littoral Côte d’Opale, CNRS, Wimereux, France
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8
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Bier RL, Vass M, Székely AJ, Langenheder S. Ecosystem size-induced environmental fluctuations affect the temporal dynamics of community assembly mechanisms. THE ISME JOURNAL 2022; 16:2635-2643. [PMID: 35982230 PMCID: PMC9666552 DOI: 10.1038/s41396-022-01286-9] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/17/2021] [Revised: 06/23/2022] [Accepted: 07/05/2022] [Indexed: 12/15/2022]
Abstract
Understanding processes that determine community membership and abundance is important for many fields from theoretical community ecology to conservation. However, spatial community studies are often conducted only at a single timepoint despite the known influence of temporal variability on community assembly processes. Here we used a spatiotemporal study to determine how environmental fluctuation differences induced by mesocosm volumes (larger volumes were more stable) influence assembly processes of aquatic bacterial metacommunities along a press disturbance gradient. By combining path analysis and network approaches, we found mesocosm size categories had distinct relative influences of assembly process and environmental factors that determined spatiotemporal bacterial community composition, including dispersal and species sorting by conductivity. These processes depended on, but were not affected proportionately by, mesocosm size. Low fluctuation, large mesocosms primarily developed through the interplay of species sorting that became more important over time and transient priority effects as evidenced by more time-delayed associations. High fluctuation, small mesocosms had regular disruptions to species sorting and greater importance of ecological drift and dispersal limitation indicated by lower richness and higher taxa replacement. Together, these results emphasize that environmental fluctuations influence ecosystems over time and its impacts are modified by biotic properties intrinsic to ecosystem size.
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Affiliation(s)
- Raven L. Bier
- grid.8993.b0000 0004 1936 9457Department of Ecology and Genetics/Limnology, Uppsala University, Norbyvägen 18 D, 75236 Uppsala, Sweden ,grid.213876.90000 0004 1936 738XPresent Address: Savannah River Ecology Laboratory, University of Georgia, PO Drawer E, Aiken, SC 29802 USA
| | - Máté Vass
- grid.8993.b0000 0004 1936 9457Department of Ecology and Genetics/Limnology, Uppsala University, Norbyvägen 18 D, 75236 Uppsala, Sweden
| | - Anna J. Székely
- grid.8993.b0000 0004 1936 9457Department of Ecology and Genetics/Limnology, Uppsala University, Norbyvägen 18 D, 75236 Uppsala, Sweden ,grid.6341.00000 0000 8578 2742Department of Aquatic Sciences and Assessment, Swedish University of Agricultural Sciences (SLU), Box 7050, 75007 Uppsala, Sweden
| | - Silke Langenheder
- grid.8993.b0000 0004 1936 9457Department of Ecology and Genetics/Limnology, Uppsala University, Norbyvägen 18 D, 75236 Uppsala, Sweden
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Shinohara N, Nakadai R, Suzuki Y, Terui A. Spatiotemporal dimensions of community assembly. POPUL ECOL 2022. [DOI: 10.1002/1438-390x.12144] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
Affiliation(s)
- Naoto Shinohara
- Graduate School of Life Sciences Tohoku University Sendai Japan
- Faculty of Agriculture and Life Science Hirosaki University Hirosaki Japan
| | - Ryosuke Nakadai
- Biodiversity Division National Institute for Environmental Studies Tsukuba Japan
| | - Yuka Suzuki
- Department of Computational Biology Institut Pasteur, Université de Paris Paris France
| | - Akira Terui
- Department of Biology University of North Carolina at Greensboro Greensboro North Carolina USA
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10
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Wang X, Ren Y, Yu Z, Shen G, Cheng H, Tao S. Effects of environmental factors on the distribution of microbial communities across soils and lake sediments in the Hoh Xil Nature Reserve of the Qinghai-Tibetan Plateau. THE SCIENCE OF THE TOTAL ENVIRONMENT 2022; 838:156148. [PMID: 35609688 DOI: 10.1016/j.scitotenv.2022.156148] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/23/2022] [Revised: 05/07/2022] [Accepted: 05/18/2022] [Indexed: 06/15/2023]
Abstract
Comparison of microbial community diversity and composition of terrestrial and aquatic ecosystems in undisturbed regions could expand our understanding on the mechanisms of microbial community assembly and ecosystem responses to environmental change. This study investigated the spatial distribution of bacterial community diversity and composition in the lakeshore soils and lake sediments from one of the best preserved nature reserves, Hoh Xil on the Qinghai-Tibetan Plateau, and explored the corresponding environmental drivers. A total of 36 sediment and soil samples were collected from six alpine lakes and the corresponding shore zones, and their bacterial community structure was identified by high-throughput 16S rRNA gene sequencing. Significant difference (p < 0.05) in diversity and composition of bacterial communities between the soils and sediments was observed. Heterogeneous selection played a dominant role in shaping the spatial variations of bacterial communities between the soils and sediments. Results of canonical correspondence analysis showed that the difference in composition of bacterial communities at OTU level between the soils and sediments was mainly determined by the mean annual temperature, salinity, and contents of total organic carbon and total nitrogen. Structural equation modeling revealed that salinity played a significantly direct role in soil bacterial composition, while mean annual temperature indirectly affected the bacterial composition mainly through changing soil salinity. In contrast, the sediment bacterial composition was directly influenced primarily by the contents of total organic carbon and total nitrogen, while pH also had an important indirect effect on sediment bacterial composition. These results shed light on the distribution patterns of bacterial communities between lakeshore soils and lake sediments in high-altitude permafrost regions, and the major ecological processes and environmental drivers that shaped their bacterial communities, and provide insight into the mechanisms underlying microbial community assembly in such regions.
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Affiliation(s)
- Xiaojie Wang
- State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China; University of Chinese Academy of Sciences, Beijing 100049, China; MOE Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Yuxuan Ren
- MOE Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Zhiqiang Yu
- State Key Laboratory of Organic Geochemistry, Guangzhou Institute of Geochemistry, Chinese Academy of Sciences, Guangzhou 510640, China
| | - Guofeng Shen
- MOE Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
| | - Hefa Cheng
- MOE Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China.
| | - Shu Tao
- MOE Laboratory for Earth Surface Processes, College of Urban and Environmental Sciences, Peking University, Beijing 100871, China
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11
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Ye Z, Wang J, Li J, Liu G, Dong Q, Zou Y, Chau HW, Zhang C. Different roles of core and noncore bacterial taxa in maintaining soil multinutrient cycling and microbial network stability in arid fertigation agroecosystems. J Appl Ecol 2022. [DOI: 10.1111/1365-2664.14228] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/27/2022]
Affiliation(s)
- Zhencheng Ye
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University Yangling P. R. China
| | - Jie Wang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University Yangling P. R. China
| | - Jing Li
- College of Forestry Northwest A&F University Yangling P. R. China
| | - Guobin Liu
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University Yangling P. R. China
- Institute of Soil and Water Conservation Chinese Academy of Sciences and Ministry of Water Resources Yangling P. R. China
| | - Qin’ge Dong
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University Yangling P. R. China
| | - Yufeng Zou
- Key Laboratory of Agricultural Soil and Water Engineering in Arid and Semiarid Areas, Ministry of Education, Northwest A&F University Yangling China
| | - Henry Wai Chau
- Department of Soil and Physical Sciences Lincoln University Lincoln New Zealand
| | - Chao Zhang
- State Key Laboratory of Soil Erosion and Dryland Farming on the Loess Plateau, Northwest A&F University Yangling P. R. China
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12
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Experimental manipulation of microbiota reduces host thermal tolerance and fitness under heat stress in a vertebrate ectotherm. Nat Ecol Evol 2022; 6:405-417. [PMID: 35256809 DOI: 10.1038/s41559-022-01686-2] [Citation(s) in RCA: 23] [Impact Index Per Article: 11.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2021] [Accepted: 01/28/2022] [Indexed: 12/11/2022]
Abstract
Identifying factors that influence how ectothermic animals respond physiologically to changing temperatures is of high importance given current threats of global climate change. Host-associated microbial communities impact animal physiology and have been shown to influence host thermal tolerance in invertebrate systems. However, the role of commensal microbiota in the thermal tolerance of ectothermic vertebrates is unknown. Here we show that experimentally manipulating the tadpole microbiome through environmental water sterilization reduces the host's acute thermal tolerance to both heat and cold, alters the thermal sensitivity of locomotor performance, and reduces animal survival under prolonged heat stress. We show that these tadpoles have reduced activities of mitochondrial enzymes and altered metabolic rates compared with tadpoles colonized with unmanipulated microbiota, which could underlie differences in thermal phenotypes. These results demonstrate a strong link between the microbiota of an ectothermic vertebrate and the host's thermal tolerance, performance and fitness. It may therefore be important to consider host-associated microbial communities when predicting species' responses to climate change.
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13
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Koskinen JS, Abrego N, Vesterinen EJ, Schulz T, Roslin T, Nyman T. Imprints of latitude, host taxon, and decay stage on fungus‐associated arthropod communities. ECOL MONOGR 2022. [DOI: 10.1002/ecm.1516] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
Affiliation(s)
- Janne S. Koskinen
- Department of Environmental and Biological Sciences University of Eastern Finland Joensuu Finland
- Department of Agricultural Sciences University of Helsinki Finland
| | - Nerea Abrego
- Department of Agricultural Sciences University of Helsinki Finland
- Department of Biological and Environmental Science University of Jyväskylä Finland
| | | | - Torsti Schulz
- Organismal and Evolutionary Biology Research Programme University of Helsinki Finland
| | - Tomas Roslin
- Department of Agricultural Sciences University of Helsinki Finland
- Department of Ecology Swedish University of Agricultural Sciences Uppsala Sweden
| | - Tommi Nyman
- Department of Ecosystems in the Barents Region Norwegian Institute of Bioeconomy Research Svanvik Norway
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14
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Koide D, Yoshikawa T, Ishihama F, Kadoya T. Complex range shifts among forest functional types under the contemporary warming. GLOBAL CHANGE BIOLOGY 2022; 28:1477-1492. [PMID: 34879441 DOI: 10.1111/gcb.16001] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/28/2021] [Accepted: 10/15/2021] [Indexed: 06/13/2023]
Abstract
The direction and magnitude of species distribution shifts tend to differ among species and functional types (FTs). Quantifying functional trait variation and species interactions will improve our understanding of the complex mechanisms that govern ecosystem dynamics and their responses to climate change. Here, we analyzed differences in the juvenile and adult temperature ranges of Japanese tree species at the mean, colder edge, and warmer edge of their distributions to reveal how functional traits affect interactions between different FT groups (e.g., deciduous and evergreen broad-leaved trees), using linear models and permutation tests. Overall, juveniles preferred cooler sites, but with high variation. The variation among species was partly explained by the difference in seed mass where species with lighter seeds tend to colonize colder sites. On the other hand, the distribution range of FTs showed complex behavior at the ecotones of different FTs. Specifically, in three of eight ecotones, nonparallel range shifts between FTs were detected, which includes cold shifting in deciduous broad-leaved FT where a warm shift by subalpine FT happened, and cold shifting in subtropical FT where warm shifts by either the deciduous broad-leaved or the evergreen broad-leaved FTs happened. Our results suggest that past warming has caused a general cold shift at species level, whereas different mechanisms, such as light seeds disperse farther in distribution's colder edge and heavy seeds (e.g., evergreen broad-leaved) compete better in warmer edge, create nonparallel responses of FT distribution ranges leading to the observed homogenization at several ecotones among FTs. These complex range shifts at FT level have crucial implications for climate change mitigation and adaptation.
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Affiliation(s)
- Dai Koide
- Center for Climate Change Adaptation, National Institute for Environmental Studies, Tsukuba, Japan
| | - Tetsuro Yoshikawa
- Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies, Ibaraki, Japan
| | - Fumiko Ishihama
- Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies, Ibaraki, Japan
| | - Taku Kadoya
- Center for Environmental Biology and Ecosystem Studies, National Institute for Environmental Studies, Ibaraki, Japan
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15
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Cerezer FO, Cáceres NC, Dambros CS. Effect of Productivity on Community Size Explains the Latitudinal Diversity Gradient of South American Small Mammals. Am Nat 2021; 198:E111-E121. [PMID: 34559610 DOI: 10.1086/716171] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
AbstractAlthough many studies have shown that species richness increases from high to low latitudes (the latitudinal diversity gradient), the mechanisms responsible for generating and maintaining higher species richness in the tropics remain intensely debated. Here we investigate how the effects of temperature on speciation rates (kinetic effects) and the effects of productivity on community size (chemical effects) explain the latitudinal diversity gradient of South American small mammals. We implemented Bayesian models that integrate processes from the neutral and metabolic theories, comparing model predictions with empirical richness patterns. The neutral-metabolic model predicted the latitudinal richness gradient in South American small mammals. We found evidence that the effects of productivity on community size are more important for explaining differences in species richness than the effects of temperature on speciation rates. These results suggest that differences in species richness along latitudinal gradients are regulated primarily by the chemical effects of productivity on speciation-extinction dynamics.
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16
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Donald J, Murienne J, Chave J, Iribar A, Louisanna E, Manzi S, Roy M, Tao S, Orivel J, Schimann H, Zinger L. Multi-taxa environmental DNA inventories reveal distinct taxonomic and functional diversity in urban tropical forest fragments. Glob Ecol Conserv 2021. [DOI: 10.1016/j.gecco.2021.e01724] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/25/2022] Open
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17
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Govaert L, Altermatt F, De Meester L, Leibold MA, McPeek MA, Pantel JH, Urban MC. Integrating fundamental processes to understand eco‐evolutionary community dynamics and patterns. Funct Ecol 2021. [DOI: 10.1111/1365-2435.13880] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
Affiliation(s)
- Lynn Govaert
- Department of Evolutionary Biology and Environmental Studies University of Zurich Zurich Switzerland
- Department of Aquatic Ecology Eawag: Swiss Federal Institute of Aquatic Science and Technology Dübendorf Switzerland
- URPP Global Change and BiodiversityUniversity of Zurich Zurich Switzerland
- Leibniz Institut für Gewässerökologie und Binnenfischerei (IGB) Berlin Germany
| | - Florian Altermatt
- Department of Evolutionary Biology and Environmental Studies University of Zurich Zurich Switzerland
- Department of Aquatic Ecology Eawag: Swiss Federal Institute of Aquatic Science and Technology Dübendorf Switzerland
- URPP Global Change and BiodiversityUniversity of Zurich Zurich Switzerland
| | - Luc De Meester
- Leibniz Institut für Gewässerökologie und Binnenfischerei (IGB) Berlin Germany
- Laboratory of Aquatic Ecology, Evolution and Conservation KU Leuven Leuven Belgium
- Institute of Biology Freie Universität Berlin Berlin Germany
| | | | - Mark A. McPeek
- Department of Biological Sciences Dartmouth College Hanover NH USA
| | - Jelena H. Pantel
- Department of Computer Science, Mathematics, and Environmental Science The American University of Paris Paris France
| | - Mark C. Urban
- Center of Biological Risk and Department of Ecology and Evolutionary Biology University of Connecticut Storrs CT USA
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18
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Bodawatta KH, Koane B, Maiah G, Sam K, Poulsen M, Jønsson KA. Species-specific but not phylosymbiotic gut microbiomes of New Guinean passerine birds are shaped by diet and flight-associated gut modifications. Proc Biol Sci 2021; 288:20210446. [PMID: 33878920 DOI: 10.1098/rspb.2021.0446] [Citation(s) in RCA: 20] [Impact Index Per Article: 6.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/13/2022] Open
Abstract
Animal hosts have evolved intricate associations with microbial symbionts, where both depend on each other for particular functions. In many cases, these associations lead to phylosymbiosis, where phylogenetically related species harbour compositionally more similar microbiomes than distantly related species. However, evidence for phylosymbiosis is either weak or lacking in gut microbiomes of flying vertebrates, particularly in birds. To shed more light on this phenomenon, we compared cloacal microbiomes of 37 tropical passerine bird species from New Guinea using 16S rRNA bacterial gene sequencing. We show a lack of phylosymbiosis and document highly variable microbiomes. Furthermore, we find that gut bacterial community compositions are species-specific and tend to be shaped by host diet but not sampling locality, potentially driven by the similarities in habitats used by individual species. We further show that flight-associated gut modifications, coupled with individual dietary differences, shape gut microbiome structure and variation, contributing to the lack of phylosymbiosis. These patterns indicate that the stability of symbiosis may depend on microbial functional diversity rather than taxonomic composition. Furthermore, the more variable and fluid host-microbe associations suggest probable disparities in the potential for coevolution between bird host species and microbial symbionts.
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Affiliation(s)
- Kasun H Bodawatta
- Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark
| | - Bonny Koane
- New Guinea Binatang Research Centre, Madang, Papua New Guinea
| | - Gibson Maiah
- New Guinea Binatang Research Centre, Madang, Papua New Guinea
| | - Katerina Sam
- Biology Centre of Czech Academy of Sciences, Institute of Entomology, Ceske Budejovice, Branisovska 31, 37005, Czech Republic.,Faculty of Science, University of South Bohemia, Ceske Budejovice, Branisovska 1760, 37005, Czech Republic
| | - Michael Poulsen
- Section for Ecology and Evolution, Department of Biology, University of Copenhagen, Copenhagen, Denmark
| | - Knud A Jønsson
- Natural History Museum of Denmark, University of Copenhagen, Copenhagen, Denmark
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19
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Dallas T, Melbourne BA, Legault G, Hastings A. Initial abundance and stochasticity influence competitive outcome in communities. J Anim Ecol 2021; 90:1691-1700. [PMID: 33759453 DOI: 10.1111/1365-2656.13485] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2020] [Accepted: 03/18/2021] [Indexed: 11/30/2022]
Abstract
Predicting competitive outcomes in communities frequently involves inferences based on deterministic population models since these provide clear criteria for exclusion (e.g. R* rule) or long-term coexistence (e.g. mutual invasibility). However, incorporating stochasticity into population- or community-level processes into models is necessary if the goal is to explain variation in natural systems, which are inherently stochastic. Similarly, in systems with demographic or environmental stochasticity, weaker competitors have the potential to exclude superior competitors, contributing to what is known as 'competitive indeterminacy'. The importance of such effects for natural communities is unknown, in part because it is difficult to demonstrate that multiple forms of stochasticity are present in these communities. Moreover, the effects of multiple forms of stochasticity on competitive outcomes are largely untested, even in theory. Here, we address these issues by examining the role of stochasticity in replicated communities of flour beetles (Tribolium sp.). To do so, we developed a set of two-species stochastic Ricker models incorporating four distinct forms of stochasticity: environmental stochasticity, demographic stochasticity, demographic heterogeneity and stochastic sex determination. By fitting models to experimental data, and simulating fit models to examine long- term behaviour, we found that both the duration of transient coexistence and the degree of competitive indeterminacy were sensitive to the forms of stochasticity included in our models. These findings suggest the current estimates of extinction risk, coexistence and time until competitive exclusion in communities may not be accurate when based on models that exclude relevant forms of stochasticity.
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Affiliation(s)
- Tad Dallas
- Department of Biological Sciences, Louisiana State University, Baton Rouge, LA, USA
| | - Brett A Melbourne
- Department of Ecology and Evolutionary Biology, University of Colorado-Boulder, Boulder, CO, USA
| | - Geoffrey Legault
- Department of Forest and Conservation Science, University of British Columbia, Vancouver, BC, Canada
| | - Alan Hastings
- Department of Environmental Science and Policy, University of California-Davis, Davis, CA, USA
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20
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Zhu J, Zhang Y, Yang X, Chen N, Jiang L. Synergistic effects of nitrogen and CO 2 enrichment on alpine grassland biomass and community structure. THE NEW PHYTOLOGIST 2020; 228:1283-1294. [PMID: 32574402 DOI: 10.1111/nph.16767] [Citation(s) in RCA: 7] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/01/2019] [Accepted: 06/15/2020] [Indexed: 06/11/2023]
Abstract
Global environmental change is altering the Earth's ecosystems. However, much research has focused on ecosystem-level responses, and we know substantially less about community-level responses to global change stressors. Here we conducted a 6-yr field experiment in a high-altitude (4600 m asl) alpine grassland on the Tibetan Plateau to explore the effects of nitrogen (N) addition and rising atmospheric CO2 concentration on plant communities. Our results showed that N and CO2 enrichment had synergistic effects on alpine grassland communities. Adding nitrogen or CO2 alone did not alter total community biomass, species diversity or community composition, whereas adding both resources together increased community biomass, reduced species diversity and altered community composition. The observed decline in species diversity under simultaneous N and CO2 enrichment was associated with greater community biomass and lower soil water content, and driven by the loss of species characterised simultaneously by tall stature and small specific leaf area. Our findings point to the co-limitation of alpine plant community biomass and structure by nitrogen and CO2 , emphasising the need for future studies to consider multiple aspects of global environmental change together to gain a more complete understanding of their ecological consequences.
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Affiliation(s)
- Juntao Zhu
- Lhasa Plateau Ecosystem Research Station, Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA
| | - Yangjian Zhang
- Lhasa Plateau Ecosystem Research Station, Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
- CAS Center for Excellence in Tibetan Plateau Earth Sciences, Beijing, 100101, China
- College of Resources and Environment, University of Chinese Academy of Sciences, Beijing, 100190, China
| | - Xian Yang
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA
| | - Ning Chen
- Lhasa Plateau Ecosystem Research Station, Key Laboratory of Ecosystem Network Observation and Modeling, Institute of Geographic Sciences and Natural Resources Research, Chinese Academy of Sciences, Beijing, 100101, China
| | - Lin Jiang
- School of Biological Sciences, Georgia Institute of Technology, Atlanta, GA, 30332, USA
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21
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Yuan S, Yu Z, Pan S, Huang J, Meng F. Deciphering the succession dynamics of dominant and rare genera in biofilm development process. THE SCIENCE OF THE TOTAL ENVIRONMENT 2020; 739:139961. [PMID: 32540665 DOI: 10.1016/j.scitotenv.2020.139961] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2020] [Revised: 06/02/2020] [Accepted: 06/02/2020] [Indexed: 06/11/2023]
Abstract
Deciphering the succession dynamics of dominant and rare taxa is crucial to understand the stability and ecosystem functions of biofilm communities. However, the essential laws of the succession dynamics based on dominant and rare taxa were still unenlightened. Herein, we investigated the succession dynamics of dominant and rare genera in multi-species biofilms developed in flow cells fed with 10 and 40 mg-TOC/L LB broth. The relative abundance of dominant genera (Enterobacteria and Acinetobacter) decreased remarkably (from 94.63% to 73.22%) in 10 mg-TOC/L LB broth, whereas they kept relatively steady (93.75 ± 4.23%) along with the cultivation time in 40 mg-TOC/L LB broth. Fluorescence in situ hybridization showed that rare genera tended to form clusters at both concentrations, while weaker dispersal of dominant genera caused patchier biofilm structures in 10 mg-TOC/L LB broth compared to that in 40 mg-TOC/L LB broth. Null model analyses further demonstrated that the stochastic ecological drift was more pronounced in the community assembly of biofilms in 10 mg-TOC/L LB broth (73.33%) than those in 40 mg-TOC/L LB broth (60.95%), weakening the competitive superiority of dominant taxa in the patchier biofilms. In addition, the co-occurrence network reflected that the positive interactions among rare genera contributed to exclude dominant genera in 10 mg-TOC/L LB broth, whereas negative interactions only occurred between the dominant Enterobacter and Acinetobacter or rare Comamonas in 40 mg-TOC/L LB broth. This study highlighted the distinctive succession dynamics of dominant and rare genera in biofilms at different substrate concentrations, which would advance our understanding of the biofilm communities in biofilm-related process.
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Affiliation(s)
- Shasha Yuan
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, PR China; National Engineering Laboratory for Pollution Control and Waste Utilization in Livestock and Poultry Production, Changsha, Hunan 410125, PR China
| | - Zhong Yu
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, PR China; National Engineering Laboratory for Pollution Control and Waste Utilization in Livestock and Poultry Production, Changsha, Hunan 410125, PR China
| | - Siyi Pan
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, PR China; National Engineering Laboratory for Pollution Control and Waste Utilization in Livestock and Poultry Production, Changsha, Hunan 410125, PR China
| | - Jiamei Huang
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, PR China; National Engineering Laboratory for Pollution Control and Waste Utilization in Livestock and Poultry Production, Changsha, Hunan 410125, PR China
| | - Fangang Meng
- School of Environmental Science and Engineering, Sun Yat-sen University, Guangzhou 510275, PR China; Guangdong Provincial Key Laboratory of Environmental Pollution Control and Remediation Technology, Sun Yat-sen University, Guangzhou 510275, PR China; National Engineering Laboratory for Pollution Control and Waste Utilization in Livestock and Poultry Production, Changsha, Hunan 410125, PR China.
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22
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Gooriah LD, Davidar P, Chase JM. Species-area relationships in the Andaman and Nicobar Islands emerge because rarer species are disproportionately favored on larger islands. Ecol Evol 2020; 10:7551-7559. [PMID: 32760548 PMCID: PMC7391309 DOI: 10.1002/ece3.6480] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2019] [Revised: 05/09/2020] [Accepted: 05/15/2020] [Indexed: 11/17/2022] Open
Abstract
The island species-area relationship (ISAR) describes how the number of species increases with increasing size of an island (or island-like habitat), and is of fundamental importance in island biogeography and conservation. Here, we use a framework based on individual-based rarefaction to infer whether ISARs result from passive sampling, or whether some processes are acting beyond sampling (e.g., disproportionate effects and/or habitat heterogeneity). Using data on total and relative abundances of four taxa (birds, butterflies, amphibians, and reptiles) from multiple islands in the Andaman and Nicobar archipelago, we examine how different metrics of biodiversity (total species richness, rarefied species richness, and abundance-weighted effective numbers of species emphasizing common species) vary with island area. Total species richness increased for all taxa, as did rarefied species richness controlling for a given sampling effort. This indicates that the ISAR did not result because of passive sampling, but that instead, some species were disproportionately favored on larger islands. For birds, frogs, and lizards, this disproportionate effect was only associated with species that were rarer in the samples, but for butterflies, both more common and rarer species were affected. Furthermore, for the two taxa for which we had plot-level data (reptiles and amphibians), within-island β-diversity did not increase with island size, suggesting that within-island compositional effects were unlikely to be driving these ISARs. Overall, our results indicate that the ISARs of these taxa are most likely driven by disproportionate effects, that is, where larger islands are important sources of biodiversity beyond a simple sampling expectation, especially through their influence on rarer species, thus emphasizing their role in the preservation and conservation of species.
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Affiliation(s)
- Leana D. Gooriah
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
| | - Priya Davidar
- Department of Ecology & Environmental SciencesPondicherry UniversityPondicherryIndia
- Sigur Nature TrustNilgirisIndia
| | - Jonathan M. Chase
- German Centre for Integrative Biodiversity Research (iDiv) Halle‐Jena‐LeipzigLeipzigGermany
- Institute for Computer ScienceMartin Luther University Halle‐WittenbergHalleGermany
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23
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Trindade DPF, Carmona CP, Pärtel M. Temporal lags in observed and dark diversity in the Anthropocene. GLOBAL CHANGE BIOLOGY 2020; 26:3193-3201. [PMID: 32282128 DOI: 10.1111/gcb.15093] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/18/2019] [Accepted: 03/16/2020] [Indexed: 06/11/2023]
Abstract
Understanding biodiversity changes in the Anthropocene (e.g. due to climate and land-use change) is an urgent ecological issue. This important task is challenging because global change effects and species responses are dependent on the spatial scales considered. Furthermore, responses are often not immediate. However, both scale and time delay issues can be tackled when, at each study site, we consider dynamics in both observed and dark diversity. Dark diversity includes those species in the region that can potentially establish and thrive in the local sites' conditions but are currently locally absent. Effectively, dark diversity connects biodiversity at the study site to the regional scales and defines the site-specific species pool (observed and dark diversity together). With dark diversity, it is possible to decompose species gains and losses into two space-related components: one associated with local dynamics (species moving from observed to dark diversity and vice versa) and another related to gains and losses of site-specific species pool (species moving to and from the pool after regional immigration, regional extinction or change in local ecological conditions). Extinction debt and immigration credit are useful to understand dynamics in observed diversity, but delays might happen in species pool changes as well. In this opinion piece we suggest that considering both observed and dark diversity and their temporal dynamics provides a deeper understanding of biodiversity changes. Considering both observed and dark diversity creates opportunities to improve conservation by allowing to identify species that are likely to go regionally extinct as well as foreseeing which of the species that newly arrive to the region are more likely to colonize local sites. Finally, by considering temporal lags and species gains and losses in observed and dark diversity, we combine phenomena at both spatial and temporal scales, providing a novel tool to examine biodiversity change in the Anthropocene.
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Affiliation(s)
- Diego P F Trindade
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Carlos P Carmona
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
| | - Meelis Pärtel
- Institute of Ecology and Earth Sciences, University of Tartu, Tartu, Estonia
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24
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Siqueira T, Saito VS, Bini LM, Melo AS, Petsch DK, Landeiro VL, Tolonen KT, Jyrkänkallio-Mikkola J, Soininen J, Heino J. Community size can affect the signals of ecological drift and niche selection on biodiversity. Ecology 2020; 101:e03014. [PMID: 32068259 DOI: 10.1002/ecy.3014] [Citation(s) in RCA: 28] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/04/2019] [Accepted: 01/22/2020] [Indexed: 11/12/2022]
Abstract
Ecological drift can override the effects of deterministic niche selection on small populations and drive the assembly of some ecological communities. We tested this hypothesis with a unique data set sampled identically in 200 streams in two regions (tropical Brazil and boreal Finland) that differ in macroinvertebrate community size by fivefold. Null models allowed us to estimate the magnitude to which β-diversity deviates from the expectation under a random assembly process while taking differences in richness and relative abundance into account, i.e., β-deviation. We found that both abundance- and incidence-based β-diversity was negatively related to community size only in Brazil. Also, β-diversity of small tropical communities was closer to stochastic expectations compared with β-diversity of large communities. We suggest that ecological drift may drive variation in some small communities by changing the expected outcome of niche selection, increasing the chances of species with low abundance and narrow distribution to occur in some communities. Habitat destruction, overexploitation, pollution, and reductions in connectivity have been reducing the size of biological communities. These environmental pressures might make smaller communities more vulnerable to novel conditions and render community dynamics more unpredictable. Incorporation of community size into ecological models should provide conceptual and applied insights into a better understanding of the processes driving biodiversity.
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Affiliation(s)
- Tadeu Siqueira
- Institute of Biosciences, São Paulo State University (UNESP), Avenida 24 A 1515, Rio Claro, SP, 13506-900, Brazil
| | - Victor S Saito
- Departamento de Ciências Ambientais, Universidade Federal de São Carlos (UFSCar), Rodovia Washington Luis, km 235, São Carlos, 13565-905, Brazil
| | - Luis M Bini
- Departamento de Ecologia, ICB, Universidade Federal de Goiás, Avenida Esperança s/n, Câmpus Samambaia, Goiânia, 74690-900, GO, Brazil
| | - Adriano S Melo
- Departamento de Ecologia, ICB, Universidade Federal de Goiás, Avenida Esperança s/n, Câmpus Samambaia, Goiânia, 74690-900, GO, Brazil.,Departamento de Ecologia, IB, Universidade Federal do Rio Grande do Sul, Avenida Bento Gonçalves 9500, Porto Alegre, 91501-970, RS, Brazil
| | - Danielle K Petsch
- Departamento de Ecologia, ICB, Universidade Federal de Goiás, Avenida Esperança s/n, Câmpus Samambaia, Goiânia, 74690-900, GO, Brazil.,Programa de Pós-Graduação em Ecologia de Ambientes Aquáticos Continentais, Universidade Estadual de Maringá, Av. Colombo 5790, Maringá, 87020-900, PR, Brazil
| | - Victor L Landeiro
- Departamento de Botânica e Ecologia, IB, Universidade Federal de Mato Grosso, Bairro Boa Esperança, Cuiabá, 78068-165, MT, Brazil
| | - Kimmo T Tolonen
- Department of Biological and Environmental Science, University of Jyväskylä, P.O. Box 35, Jyväskylä, FI-40014, Finland
| | - Jenny Jyrkänkallio-Mikkola
- Department of Geosciences and Geography, University of Helsinki, PO Box 64, Helsinki, FI-00014, Finland.,WWF Finland, Lintulahdenkatu 10, Helsinki, FIN-00500, Finland
| | - Janne Soininen
- Department of Geosciences and Geography, University of Helsinki, PO Box 64, Helsinki, FI-00014, Finland
| | - Jani Heino
- Finnish Environment Institute, Freshwater Centre, Paavo Havaksen Tie 3, Oulu, FI-90570, Finland
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25
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Affiliation(s)
- John L Orrock
- Department of Integrative Biology, University of Wisconsin, Madison, WI 53706
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26
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Ben-Hur E, Kadmon R. An experimental test of the area-heterogeneity tradeoff. Proc Natl Acad Sci U S A 2020; 117:4815-4822. [PMID: 32071250 PMCID: PMC7060741 DOI: 10.1073/pnas.1911540117] [Citation(s) in RCA: 9] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/18/2022] Open
Abstract
A fundamental property of ecosystems is a tradeoff between the number and size of habitats: as the number of habitats within a fixed area increases, the average area per habitat must decrease. This tradeoff is termed the "area-heterogeneity tradeoff." Theoretical models suggest that the reduction in habitat sizes under high levels of heterogeneity may cause a decline in species richness because it reduces the amount of effective area available for individual species under high levels of heterogeneity, thereby increasing the likelihood of stochastic extinctions. Here, we test this prediction using an experiment that allows us to separate the effect of the area-heterogeneity tradeoff from the total effect of habitat heterogeneity. Surprisingly, despite considerable extinctions, reduction in the amount of effective area available per species facilitated rather than reduced richness in the study communities. Our data suggest that the mechanism behind this positive effect was a decrease in the probability of deterministic competitive exclusion. We conclude that the area-heterogeneity tradeoff may have both negative and positive implications for biodiversity and that its net effect depends on the relative importance of stochastic vs. deterministic drivers of extinction in the relevant system. Our finding that the area-heterogeneity tradeoff may contribute to biodiversity adds a dimension to existing ecological theory and is highly relevant for understanding and predicting biodiversity responses to natural and anthropogenic variations in the environment.
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Affiliation(s)
- Eyal Ben-Hur
- Department of Ecology, Evolution & Behavior, Institute of Life Sciences, The Hebrew University of Jerusalem, Givat Ram, 9190401 Jerusalem, Israel
| | - Ronen Kadmon
- Department of Ecology, Evolution & Behavior, Institute of Life Sciences, The Hebrew University of Jerusalem, Givat Ram, 9190401 Jerusalem, Israel
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27
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Shoemaker LG, Sullivan LL, Donohue I, Cabral JS, Williams RJ, Mayfield MM, Chase JM, Chu C, Harpole WS, Huth A, HilleRisLambers J, James ARM, Kraft NJB, May F, Muthukrishnan R, Satterlee S, Taubert F, Wang X, Wiegand T, Yang Q, Abbott KC. Integrating the underlying structure of stochasticity into community ecology. Ecology 2020; 101:e02922. [PMID: 31652337 PMCID: PMC7027466 DOI: 10.1002/ecy.2922] [Citation(s) in RCA: 65] [Impact Index Per Article: 16.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 02/27/2019] [Revised: 08/26/2019] [Accepted: 09/10/2019] [Indexed: 01/13/2023]
Abstract
Stochasticity is a core component of ecology, as it underlies key processes that structure and create variability in nature. Despite its fundamental importance in ecological systems, the concept is often treated as synonymous with unpredictability in community ecology, and studies tend to focus on single forms of stochasticity rather than taking a more holistic view. This has led to multiple narratives for how stochasticity mediates community dynamics. Here, we present a framework that describes how different forms of stochasticity (notably demographic and environmental stochasticity) combine to provide underlying and predictable structure in diverse communities. This framework builds on the deep ecological understanding of stochastic processes acting at individual and population levels and in modules of a few interacting species. We support our framework with a mathematical model that we use to synthesize key literature, demonstrating that stochasticity is more than simple uncertainty. Rather, stochasticity has profound and predictable effects on community dynamics that are critical for understanding how diversity is maintained. We propose next steps that ecologists might use to explore the role of stochasticity for structuring communities in theoretical and empirical systems, and thereby enhance our understanding of community dynamics.
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Affiliation(s)
- Lauren G. Shoemaker
- Department of BotanyUniversity of Wyoming1000 E. University Ave.LaramieWyoming82017USA
- Department of Ecology, Evolution, and BehaviorUniversity of Minnesota1987 Upper Buford CircleSaint PaulMinnesota55108USA
- Department of Ecology and Evolutionary BiologyUniversity of Colorado1900 Pleasant StreetBoulderColorado80309USA
| | - Lauren L. Sullivan
- Department of Ecology, Evolution, and BehaviorUniversity of Minnesota1987 Upper Buford CircleSaint PaulMinnesota55108USA
- Division of Biological SciencesUniversity of Missouri105 Tucker HallColumbiaMissouri65211USA
| | - Ian Donohue
- Department of Zoology, School of Natural SciencesTrinity CollegeCollege Green Dublin 2Ireland
| | - Juliano S. Cabral
- Synthesis Centre of the German Centre for Integrative Biodiversity Research (sDiv) Halle-Jena-LeipzigDeutscher Platz 5eLeipzig04103Germany
- Ecosystem Modeling, Center of Computation and Theoretical BiologyUniversity of WürzburgEmil-Fischer-Strasse 3297074WürzburgGermany
| | - Ryan J. Williams
- Division of Biological SciencesUniversity of Missouri105 Tucker HallColumbiaMissouri65211USA
| | - Margaret M. Mayfield
- The University of QueenslandSchool of Biological SciencesGoddard BuildingBrisbaneQueensland4072Australia
| | - Jonathan M. Chase
- German Centre for Integrative Biodiversity Research (iDiv)Deutscher Platz 5eLeipzig04103Germany
- Institute for Computer ScienceMartin Luther University Halle-WittenbergHalle06099Germany
| | - Chengjin Chu
- Department of Ecology, State Key Laboratory of Biocontrol and School of Life SciencesSun Yat-sen University510275GuangzhouGuangdongChina
| | - W. Stanley Harpole
- German Centre for Integrative Biodiversity Research (iDiv)Deutscher Platz 5eLeipzig04103Germany
- Helmholtz Center for Environmental Research–UFZPermoserstrasse 1504318LeipzigGermany
- Institute of BiologyMartin Luther University Halle-WittenbergAm Kirchtor 106108Halle (Saale)Germany
| | - Andreas Huth
- German Centre for Integrative Biodiversity Research (iDiv)Deutscher Platz 5eLeipzig04103Germany
- Helmholtz Center for Environmental Research–UFZPermoserstrasse 1504318LeipzigGermany
- Institute of Environmental Research SystemsUniversity of OsnabrückP.O. Box 44 69,49069OsnabrückGermany
| | | | - Aubrie R. M. James
- Department of Ecology and Evolutionary BiologyCornell UniversityE145 Corson HallIthacaNew York14853USA
| | - Nathan J. B. Kraft
- Department of Ecology and Evolutionary BiologyUniversity of California, Los Angeles621 Charles E. Young Drive East, P.O. Box 957246Los AngelesCA90095USA
| | - Felix May
- German Centre for Integrative Biodiversity Research (iDiv)Deutscher Platz 5eLeipzig04103Germany
- Institute for Computer ScienceMartin Luther University Halle-WittenbergHalle06099Germany
- Center for MethodologyLeuphana University LüneburgUniversitätsallee 1D‐21335LüneburgGermany
| | - Ranjan Muthukrishnan
- Environmental Resilience InstituteIndiana University717 E 8th StBloomingtonIndiana 47408USA
- Department of Fisheries, Wildlife, and Conservation BiologyUniversity of Minnesota2003 Upper Buford CircleSt. PaulMinnesota55108USA
| | - Sean Satterlee
- Department of Ecology, Evolution, and Organismal BiologyIowa State University251 Bessey HallAmesIowa50011USA
| | - Franziska Taubert
- Helmholtz Center for Environmental Research–UFZPermoserstrasse 1504318LeipzigGermany
| | - Xugao Wang
- CAS Key Laboratory of Forest Ecology and Management, Institute of Applied EcologyChinese Academy of SciencesShenyang 110016China
| | - Thorsten Wiegand
- German Centre for Integrative Biodiversity Research (iDiv)Deutscher Platz 5eLeipzig04103Germany
- Helmholtz Center for Environmental Research–UFZPermoserstrasse 1504318LeipzigGermany
| | - Qiang Yang
- Department of Zoology, School of Natural SciencesTrinity CollegeCollege Green Dublin 2Ireland
- Department of BiologyUniversity of KonstanzUniversitätsstraße 1078464KonstanzGermany
| | - Karen C. Abbott
- Department of BiologyCase Western Reserve University10900 Euclid AvenueClevelandOH44106USA
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Ecological time lags and the journey towards conservation success. Nat Ecol Evol 2020; 4:304-311. [PMID: 31988448 DOI: 10.1038/s41559-019-1087-8] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/13/2019] [Accepted: 12/19/2019] [Indexed: 11/09/2022]
Abstract
Global conservation targets to reverse biodiversity declines and halt species extinctions are not being met despite decades of conservation action. However, a lack of measurable change in biodiversity indicators towards these targets is not necessarily a sign that conservation has failed; instead, temporal lags in species' responses to conservation action could be masking our ability to observe progress towards conservation success. Here we present our perspective on the influence of ecological time lags on the assessment of conservation success and review the principles of time lags and their ecological drivers. We illustrate how a number of conceptual species may respond to change in a theoretical landscape and evaluate how these responses might influence our interpretation of conservation success. We then investigate a time lag in a real biodiversity indicator using empirical data and explore alternative approaches to understand the mechanisms that drive time lags. Our proposal for setting and evaluating conservation targets is to use milestones, or interim targets linked to specific ecological mechanisms at key points in time, to assess whether conservation actions are likely to be working. Accounting for ecological time lags in biodiversity targets and indicators will greatly improve the way that we evaluate conservation successes.
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Thorn S, Chao A, Bernhardt-Römermann M, Chen YH, Georgiev KB, Heibl C, Müller J, Schäfer H, Bässler C. Rare species, functional groups, and evolutionary lineages drive successional trajectories in disturbed forests. Ecology 2020; 101:e02949. [PMID: 31833562 DOI: 10.1002/ecy.2949] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 07/11/2019] [Revised: 09/09/2019] [Accepted: 11/04/2019] [Indexed: 11/08/2022]
Abstract
Following natural disturbances, additional anthropogenic disturbance may alter community recovery by affecting the occurrences of species, functional groups, and evolutionary lineages. However, our understanding of whether rare, common, or dominant species, functional groups, or evolutionary lineages are most strongly affected by an additional disturbance, particularly across multiple taxa, is limited. Here, we used a generalized diversity concept based on Hill numbers to quantify the community differences of vascular plants, bryophytes, lichens, wood-inhabiting fungi, saproxylic beetles, and birds in a storm-disturbed, experimentally salvage logged forest. Communities of all investigated species groups showed dissimilarities between logged and unlogged plots. Most species groups showed no significant changes in dissimilarities between logged and unlogged plots over the first seven years of succession, indicating a lack of community recovery. In general, the dissimilarities of communities were mainly driven by rare species. Convergence of dissimilarities occurred more often than divergence during the early stages of succession for rare species, indicating a major role in driving decreasing taxonomic dissimilarities between logged and unlogged plots over time. Trends in species dissimilarities only partially match the trends in dissimilarities of functional groups and evolutionary lineages, with little significant changes in successional trajectories. Nevertheless, common and dominant species contributed to a convergence of dissimilarities over time in the case of the functional dissimilarities of wood-inhabiting fungi. Our study shows that salvage logging following disturbances can alter successional trajectories in early stages of forest succession following natural disturbances. However, community changes over time may differ remarkably in different taxonomic groups and are best detected based on taxonomic, rather than functional or phylogenetic dissimilarities.
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Affiliation(s)
- Simon Thorn
- Field Station Fabrikschleichach, Biocenter, University of Würzburg, Glashüttenstrasse 5, Rauhenebrach, 96181, Germany
| | - Anne Chao
- Institute of Statistics, National Tsing Hua University Hsin-Chu, Hsin-Chu City, 30043, Taiwan
| | - Markus Bernhardt-Römermann
- Institute of Ecology and Evolution, Friedrich Schiller University Jena, Dornburger Strasse 159, Jena, 07743, Germany
| | - Yan-Han Chen
- Institute of Statistics, National Tsing Hua University Hsin-Chu, Hsin-Chu City, 30043, Taiwan
| | - Kostadin B Georgiev
- Field Station Fabrikschleichach, Biocenter, University of Würzburg, Glashüttenstrasse 5, Rauhenebrach, 96181, Germany.,Bavarian Forest National Park, Freyunger Strasse 2, Grafenau, 94481, Germany
| | - Christoph Heibl
- Bavarian Forest National Park, Freyunger Strasse 2, Grafenau, 94481, Germany
| | - Jörg Müller
- Field Station Fabrikschleichach, Biocenter, University of Würzburg, Glashüttenstrasse 5, Rauhenebrach, 96181, Germany.,Bavarian Forest National Park, Freyunger Strasse 2, Grafenau, 94481, Germany
| | - Hanno Schäfer
- Plant Biodiversity, Department of Ecology and Ecosystem Management, Technische Universität München, Emil-Ramann Strasse 2, Freising, 85354, Germany
| | - Claus Bässler
- Bavarian Forest National Park, Freyunger Strasse 2, Grafenau, 94481, Germany.,Goethe University Frankfurt, Faculty of Biological Sciences, Institute for Ecology, Evolution and Diversity, Frankfurt am Main, D-60438, Germany
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30
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Fungal community assembly in drought-stressed sorghum shows stochasticity, selection, and universal ecological dynamics. Nat Commun 2020; 11:34. [PMID: 31911594 PMCID: PMC6946711 DOI: 10.1038/s41467-019-13913-9] [Citation(s) in RCA: 110] [Impact Index Per Article: 27.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/06/2019] [Accepted: 11/28/2019] [Indexed: 11/16/2022] Open
Abstract
Community assembly of crop-associated fungi is thought to be strongly influenced by deterministic selection exerted by the plant host, rather than stochastic processes. Here we use a simple, sorghum system with abundant sampling to show that stochastic forces (drift or stochastic dispersal) act on fungal community assembly in leaves and roots early in host development and when sorghum is drought stressed, conditions when mycobiomes are small. Unexpectedly, we find no signal for stochasticity when drought stress is relieved, likely due to renewed selection by the host. In our experimental system, the host compartment exerts the strongest effects on mycobiome assembly, followed by the timing of plant development and lastly by plant genotype. Using a dissimilarity-overlap approach, we find a universality in the forces of community assembly of the mycobiomes of the different sorghum compartments and in functional guilds of fungi. Fungal community assembly on crop plants is thought to be driven by deterministic selection exerted by the host. Here Gao et al. use a sorghum system to show that stochastic forces act on fungal community assembly in leaves and roots early in host development and when sorghum is drought stressed.
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31
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Wang P, Li S, Yang X, Zhou J, Shu W, Jiang L. Mechanisms of soil bacterial and fungal community assembly differ among and within islands. Environ Microbiol 2019; 22:1559-1571. [DOI: 10.1111/1462-2920.14864] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/01/2019] [Revised: 11/10/2019] [Accepted: 11/14/2019] [Indexed: 11/30/2022]
Affiliation(s)
- Pandeng Wang
- State Key Laboratory of Biocontrol, Guangdong Key Laboratory of Plant Resources and Conservation of Guangdong Higher Education Institutes, School of Life Sciences Sun Yat‐sen University Guangzhou 510275 People's Republic of China
- School of Biological Sciences, Georgia Institute of Technology Atlanta GA 30332 USA
| | - Shao‐Peng Li
- Zhejiang Tiantong Forest Ecosystem National Observation and Research Station, School of Ecological and Environmental Sciences East China Normal University Shanghai 200241 China
- Institute of Eco‐Chongming (IEC) Shanghai 200062 China
| | - Xian Yang
- School of Biological Sciences, Georgia Institute of Technology Atlanta GA 30332 USA
| | - Jizhong Zhou
- Department of Microbiology and Plant Biology, Institute for Environmental Genomics, and School of Civil Engineering and Environmental Sciences University of Oklahoma Norman OK 73019 USA
- State Key Joint Laboratory of Environment Simulation and Pollution Control, School of Environment Tsinghua University Beijing 100084 People's Republic of China
| | - Wensheng Shu
- School of Life Sciences, South China Normal University Guangzhou 510631 People's Republic of China
| | - Lin Jiang
- School of Biological Sciences, Georgia Institute of Technology Atlanta GA 30332 USA
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32
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Jiao S, Wang J, Wei G, Chen W, Lu Y. Dominant role of abundant rather than rare bacterial taxa in maintaining agro-soil microbiomes under environmental disturbances. CHEMOSPHERE 2019; 235:248-259. [PMID: 31260865 DOI: 10.1016/j.chemosphere.2019.06.174] [Citation(s) in RCA: 77] [Impact Index Per Article: 15.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/17/2018] [Revised: 06/19/2019] [Accepted: 06/23/2019] [Indexed: 06/09/2023]
Abstract
Elucidating the mechanisms underpinning the responses of abundant and rare microbial taxa to environmental disturbances is essential for understanding the biodiversity-stability relationship and maintaining microbial diversity. Here, we explored the response patterns of abundant and rare bacterial taxa to disturbances by invasive plant growth and oil contamination in agricultural soils across a large spatial scale (latitude gradient = 18.62°-46.51°). Our meta-analysis based on existing Illumina sequencing datasets showed that abundant taxa persisted under the disturbances whereas rare taxa were more easily affected, indicating the higher resilience or resistance of abundant taxa to disturbances. The responses of abundant taxa were associated with mean annual temperature at the sampling sites, while rare taxa instead showed stochastic responses. There were significantly negative linear regressions between bacterial α-diversity and community dissimilarities (disturbed vs. undisturbed soils), suggesting stronger resilience or resistance in those bacterial communities with higher α-diversity. This resilience or resistance was mainly associated with the α-diversity of abundant taxa. Our network analysis showed that the disturbances substantially decreased the strength of the connections, loosened the co-occurrence relationships, and reshaped the complex bacterial interactions. In the undisturbed soils, abundant taxa were located in central positions within the network more often than were rare taxa, while these trends were reversed in the disturbed soils. Our results suggest that abundant taxa play a dominant role in the stability and maintenance of agro-soil bacterial communities, while rare taxa could greatly influence local bacterial interactions under environmental disturbances.
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Affiliation(s)
- Shuo Jiao
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, 712100, China; College of Urban and Environmental Sciences, Peking University, Beijing, 100871, China
| | - Junman Wang
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Gehong Wei
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, 712100, China
| | - Weimin Chen
- State Key Laboratory of Crop Stress Biology in Arid Areas, College of Life Sciences, Northwest A&F University, Yangling, Shaanxi, 712100, China.
| | - Yahai Lu
- College of Urban and Environmental Sciences, Peking University, Beijing, 100871, China.
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33
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Li P, Liu J, Jiang C, Wu M, Liu M, Li Z. Distinct Successions of Common and Rare Bacteria in Soil Under Humic Acid Amendment - A Microcosm Study. Front Microbiol 2019; 10:2271. [PMID: 31632376 PMCID: PMC6779779 DOI: 10.3389/fmicb.2019.02271] [Citation(s) in RCA: 26] [Impact Index Per Article: 5.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/25/2019] [Accepted: 09/18/2019] [Indexed: 01/08/2023] Open
Abstract
Humic acid (HA) is widely used for soil quality improvement, yet little is known how bacterial communities, especially common and rare bacteria, respond to HA amendment, which is crucial to understand biodiversity and function in agroecosystem. Therefore, a manipulated microcosm experiment with a gradient of HA amendment was conducted to unveil this. The results showed that common and rare taxa had similar patterns in species richness, while rare taxa exhibited a higher turnover, which caused their higher structural dissimilarity. Common species with wider niche breadths were more strongly influenced by deterministic filtering when compared to rare taxa, which occupied narrow niches and were primarily controlled by stochastic processes. Generally, species with wider niche breadths were always more strongly influenced by deterministic selection. The analysis of predicted functions revealed that rare taxa occupied more unique predicted functional traits than common taxa, suggesting that rare taxa played a key role in maintaining the functional diversity. In addition, there was a significant positive correlation between species richness and predicted functional diversity in rare taxa rather than common taxa. Our findings highlight the distinct structural and predicted functional successions of common and rare bacteria in soil under HA amendment.
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Affiliation(s)
- Pengfa Li
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.,University of Chinese Academy of Sciences, Beijing, China
| | - Jia Liu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.,Soil and Fertilizer & Resources and Environment Institute, Jiangxi Academy of Agricultural Sciences, Nanchang, China
| | - Chunyu Jiang
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China
| | - Meng Wu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.,University of Chinese Academy of Sciences, Beijing, China
| | - Ming Liu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.,University of Chinese Academy of Sciences, Beijing, China
| | - Zhongpei Li
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing, China.,University of Chinese Academy of Sciences, Beijing, China
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34
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Xue L, Almario J, Fabiańska I, Saridis G, Bucher M. Dysfunction in the arbuscular mycorrhizal symbiosis has consistent but small effects on the establishment of the fungal microbiota in Lotus japonicus. THE NEW PHYTOLOGIST 2019; 224:409-420. [PMID: 31125425 PMCID: PMC6773208 DOI: 10.1111/nph.15958] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/01/2019] [Accepted: 05/15/2019] [Indexed: 05/10/2023]
Abstract
Most land plants establish mutualistic interactions with arbuscular mycorrhizal (AM) fungi. Intracellular accommodation of AM fungal symbionts remodels important host traits like root morphology and nutrient acquisition. How mycorrhizal colonization impacts plant microbiota is unclear. To understand the impact of AM symbiosis on fungal microbiota, ten Lotus japonicus mutants impaired at different stages of AM formation were grown in non-sterile natural soil and their root-associated fungal communities were studied. Plant mutants lacking the capacity to form mature arbuscules (arb- ) exhibited limited growth performance associated with altered phosphorus (P) acquisition and reduction-oxidation (redox) processes. Furthermore, arb- plants assembled moderately but consistently different root-associated fungal microbiota, characterized by the depletion of Glomeromycota and the concomitant enrichment of Ascomycota, including Dactylonectria torresensis. Single and co-inoculation experiments showed a strong reduction of root colonization by D. torresensis in the presence of AM fungus Rhizophagus irregularis, particularly in arbuscule-forming plants. Our results suggest that impairment of central symbiotic functions in AM host plants leads to specific changes in root microbiomes and in tripartite interactions between the host plant, AM and non-AM fungi. This lays the foundation for mechanistic studies on microbe-microbe and microbe-host interactions in AM symbiosis of the model L. japonicus.
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Affiliation(s)
- Li Xue
- Botanical InstituteCologne BiocenterUniversity of Cologne50674CologneGermany
| | - Juliana Almario
- Botanical InstituteCologne BiocenterUniversity of Cologne50674CologneGermany
- Cluster of Excellence on Plant Sciences (CEPLAS)University of Cologne50674CologneGermany
| | - Izabela Fabiańska
- Botanical InstituteCologne BiocenterUniversity of Cologne50674CologneGermany
| | - Georgios Saridis
- Botanical InstituteCologne BiocenterUniversity of Cologne50674CologneGermany
| | - Marcel Bucher
- Botanical InstituteCologne BiocenterUniversity of Cologne50674CologneGermany
- Cluster of Excellence on Plant Sciences (CEPLAS)University of Cologne50674CologneGermany
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35
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36
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Legault G, Fox JW, Melbourne BA. Demographic stochasticity alters expected outcomes in experimental and simulated non‐neutral communities. OIKOS 2019. [DOI: 10.1111/oik.06028] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/10/2023]
Affiliation(s)
- Geoffrey Legault
- Dept of Ecology and Evolutionary Biology, Univ. of Colorado at Boulder Boulder CO USA
- Dept of Biology, Univ. of North Carolina at Chapel Hill Chapel Hill NC 27599‐3280 USA
| | - Jeremy W. Fox
- Dept of Biological Sciences, Univ. of Calgary Calgary AB Canada
| | - Brett A. Melbourne
- Dept of Ecology and Evolutionary Biology, Univ. of Colorado at Boulder Boulder CO USA
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37
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The Composition and Assembly of Bacterial Communities across the Rhizosphere and Phyllosphere Compartments of Phragmites Australis. DIVERSITY-BASEL 2019. [DOI: 10.3390/d11060098] [Citation(s) in RCA: 17] [Impact Index Per Article: 3.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/06/2023]
Abstract
The rhizosphere and the phyllosphere represent two different epiphytic compartments of host plant, which are closely related to plant growth, health, and productivity. However, the understanding of the diversity, composition, and assembly of the bacterial communities in different epiphytic microenvironments of large emerged macrophytes has remained elusive, especially the abundant and rare taxa across rhizosphere and phyllosphere communities. In this study, we collected samples of two different epiphytic compartments (rhizosphere and phyllosphere) of Phragmites australis. Both 16S rRNA gene-based high-throughput sequencing and null-model analysis were employed to determine the difference in the composition and assembly of above-mentioned epiphytic bacterial communities. Our results indicated that bacterial communities of rhizosphere exhibited higher diversity and richness than those of phyllosphere. Deterministic processes dominated the assembly of bacterial community in both compartments, and stochastic processes contributed a certain proportion (30.30%) in the assembly of phyllosphere bacterial community. We also found that rare taxa contributed more significantly to the alpha- and beta-diversity of bacterial community than those of abundant taxa. The obtained data are useful for better understanding the bacterial community of different epiphytic compartments of P. australis.
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38
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Tielens EK, Neel MN, Leopold DR, Giardina CP, Gruner DS. Multiscale analysis of canopy arthropod diversity in a volcanically fragmented landscape. Ecosphere 2019. [DOI: 10.1002/ecs2.2653] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022] Open
Affiliation(s)
- Elske K. Tielens
- Department of Entomology University of Maryland College Park Maryland USA
| | - Maile N. Neel
- Department of Entomology University of Maryland College Park Maryland USA
| | - Devin R. Leopold
- Department of Botany and Plant Pathology Oregon State University Oregon USA
| | | | - Daniel S. Gruner
- Department of Entomology University of Maryland College Park Maryland USA
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39
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Hung KLJ, Ascher JS, Davids JA, Holway DA. Ecological filtering in scrub fragments restructures the taxonomic and functional composition of native bee assemblages. Ecology 2019; 100:e02654. [PMID: 30942484 DOI: 10.1002/ecy.2654] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 09/03/2018] [Revised: 12/19/2018] [Accepted: 01/14/2019] [Indexed: 01/12/2023]
Abstract
Predicting the long-term consequences of habitat alteration for the preservation of biodiversity and ecosystem function requires an understanding of how ecological filters drive taxonomic and functional biodiversity loss. Here, we test a set of predictions concerning the role of ecological filters in restructuring native bee assemblages inhabiting fragmented coastal sage scrub ecosystems in southern California, USA. In 2011 and 2012, we collected native bees in scrub habitat belonging to two treatment categories: large natural reserves and small habitat fragments embedded in an urban landscape. We compared bee assemblages in reserve and fragment sites with respect to their taxonomic and functional alpha diversity, beta diversity, assemblage composition, and mean geographical range size estimated via distribution maps compiled for this study from digitized specimen records. We found multiple lines of evidence that ecological filtering drove bee diversity loss in fragments: a disproportionate loss of functional diversity relative to taxonomic diversity, shifts in assemblage composition driven largely by the preferential extirpation of reserve-associated indicator species, and disproportionate loss of range-restricted species. However, we found no evidence of taxonomic or functional homogenization across fragment bee assemblages, suggesting that filtering was not sufficiently strong to cause a subset of functional traits (and their associated species) to dominate assemblages in fragments. Our results suggest that ecological filtering altered bee assemblages in habitat fragments, even when such fragments contained well-preserved native plant assemblages, underscoring the importance of preserving large areas of natural habitat for the conservation of bees (especially range-restricted taxa) and their associated ecological functions.
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Affiliation(s)
- Keng-Lou James Hung
- Division of Biological Sciences, University of California, San Diego, MC0116, 9500 Gilman Drive, La Jolla, California, 92093, USA
| | - John S Ascher
- Department of Biological Sciences, National University of Singapore, 16 Science Drive 4, Singapore City, 117558, Singapore
| | - Jessica A Davids
- Division of Biological Sciences, University of California, San Diego, MC0116, 9500 Gilman Drive, La Jolla, California, 92093, USA
| | - David A Holway
- Division of Biological Sciences, University of California, San Diego, MC0116, 9500 Gilman Drive, La Jolla, California, 92093, USA
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40
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Baldo L, Riera JL, Mitsi K, Pretus JL. Processes shaping gut microbiota diversity in allopatric populations of the endemic lizard Podarcis lilfordi from Menorcan islets (Balearic Islands). FEMS Microbiol Ecol 2019; 94:4780271. [PMID: 29294010 DOI: 10.1093/femsec/fix186] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/11/2017] [Accepted: 12/22/2017] [Indexed: 12/22/2022] Open
Abstract
Compositional variation of the gut microbiota across host allopatric populations can reflect both adaptation and stochasticity since the time of separation. Major factors shaping this variation include the host phylogeographic and demographic history, the microbiota inheritance, environmental inputs and dispersal of bacteria. Here we explored the impact of these factors in driving gut community diversity in seven allopatric populations of the omnivorous lizard Podarcis lilfordi from the Menorcan coastal islets, all descending from an ancestral mainland population. Using 16S rRNA Illumina sequencing, we showed that 'islet' and 'age' (time since islet separation from mainland) were the only significant variables in microbial community clustering, suggesting a partial islet-restricted diversification following these lizards phylogeography. Despite a significant variation, islets/populations were characterized by a remarkably low bacterial uniqueness (2.4% of total OTUs) and a minor differential enrichment of taxa, indicating a negligible impact of local inputs and important host common constraints. Overall, the extant pattern of similarity/dissimilarity among islets is compatible with partial retention of the ancestral mainland microbial pool, with differences among islets potentially explained by a differential loss of bacteria following population fragmentation and bottlenecks (i.e. ecological drift). While more quantitative data are needed to validate this hypothesis, this study unveils the importance of considering both neutral and niche-driven processes in driving contemporary patterns of gut metacommunity diversity.
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Affiliation(s)
- Laura Baldo
- Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, 08028 Barcelona, Spain.,Institute for Research on Biodiversity (IRBio), University of Barcelona, 08028 Barcelona, Spain
| | - Joan Lluís Riera
- Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, 08028 Barcelona, Spain
| | - Konstantina Mitsi
- Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, 08028 Barcelona, Spain
| | - Joan Lluís Pretus
- Department of Evolutionary Biology, Ecology and Environmental Sciences, University of Barcelona, 08028 Barcelona, Spain.,Institute for Research on Biodiversity (IRBio), University of Barcelona, 08028 Barcelona, Spain
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41
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Zhou X, Li C, Li H, Shi Q. The competition-dispersal trade-off exists in forbs but not in graminoids: A case study from multispecies alpine grassland communities. Ecol Evol 2019; 9:1403-1409. [PMID: 30805169 PMCID: PMC6374675 DOI: 10.1002/ece3.4856] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/18/2018] [Revised: 10/19/2018] [Accepted: 12/04/2018] [Indexed: 11/07/2022] Open
Abstract
Much theoretical evidence has demonstrated that a trade-off between competitive and dispersal ability plays an important role in facilitating species coexistence. However, experimental evidence from natural communities is still rare. Here, we tested the competition-dispersal trade-off hypothesis in an alpine grassland in the Tianshan Mountains, Xinjiang, China, by quantifying competitive and dispersal ability using a combination of 4 plant traits (seed mass, ramet mass, height, and dispersal mode). Our results show that the competition-dispersal trade-off exists in the alpine grassland community and that this pattern was primarily demonstrated by forbs. The results suggest that most forb species are constrained to be either good competitors or good dispersers but not both, while there was no significant trade-off between competitive and dispersal ability for most graminoids. This might occur because graminoids undergo clonal reproduction, which allows them to find more benign microenvironments, forage for nutrients across a large area and store resources in clonal structures, and they are thus not strictly limited by the particular resources at our study site. To the best of our knowledge, this is the first time the CD trade-off has been tested for plants across the whole life cycle in a natural multispecies plant community, and more comprehensive studies are still needed to explore the underlying mechanisms and the linkage between the CD trade-off and community composition.
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Affiliation(s)
- Xiaolong Zhou
- Institute of Arid Ecology and EnvironmentXinjiang UniversityUrumqiChina
- Key Laboratory of Oasis Ecology Ministry EducationXinjiang UniversityUrumqiChina
| | - Chengzhi Li
- Institute of Arid Ecology and EnvironmentXinjiang UniversityUrumqiChina
- Key Laboratory of Oasis Ecology Ministry EducationXinjiang UniversityUrumqiChina
| | - Honglin Li
- State Key Laboratory of Plateau Ecology and AgricultureQinghai UniversityXinjiangChina
| | - Qingdong Shi
- Institute of Arid Ecology and EnvironmentXinjiang UniversityUrumqiChina
- Key Laboratory of Oasis Ecology Ministry EducationXinjiang UniversityUrumqiChina
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42
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Miyamoto Y, Terashima Y, Nara K. Temperature niche position and breadth of ectomycorrhizal fungi: Reduced diversity under warming predicted by a nested community structure. GLOBAL CHANGE BIOLOGY 2018; 24:5724-5737. [PMID: 30218546 DOI: 10.1111/gcb.14446] [Citation(s) in RCA: 27] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/16/2018] [Revised: 08/23/2018] [Accepted: 09/07/2018] [Indexed: 05/16/2023]
Abstract
Species with narrow niche breadths are assumed to be more susceptible to environmental changes than those with wide niche breadths. Although information on niche properties is necessary for predicting biological responses to environmental changes, such information is largely missing for soil microbes. In this study, we present the temperature niche positions and breadths of a functionally important group of eukaryotic soil microbes, ectomycorrhizal (EM) fungi. We compiled high-quality EM fungal sequence data from 26 forested sites in Japan (with mean annual temperatures ranging from 1.6 to 23.6°C) to create temperature niche profiles for each individual fungal species. Nested theory and a newly developed weighted-randomization null model were applied to 75 fungal operational taxonomic units (OTUs) with high occurrence records to examine potential preferences for certain temperature positions and breadths. Our analyses revealed that (a) many EM fungal OTUs were restricted to habitats with low mean annual temperatures, (b) fungal OTUs observed at colder sites exhibited narrower temperature breadths than expected by chance, (c) the composition of EM fungal OTUs exhibited a nested pattern along the temperature gradient, and (d) EM fungal richness was highest at colder sites, where the greatest degree of overlap in OTU occurrence was observed. These findings imply that future warming may limit the distribution of many EM fungal species that are currently adapted to only cold climates. This could eventually reduce EM fungal biodiversity, which is linked to forest function through symbiotic associations with trees. This study demonstrates the distribution and environmental ranges of various EM fungal species and can contribute to develop species distribution models with the aim of conserving microbes in the face of climate change.
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Affiliation(s)
- Yumiko Miyamoto
- Arctic Research Center, Hokkaido University, Kita-ku, Sapporo, Hokkaido, Japan
| | - Yoshie Terashima
- Tropical Biosphere Research Center, University of the Ryukyus, Nishihara-cho, Nakagami-gun, Okinawa, Japan
| | - Kazuhide Nara
- Graduate School of Frontier Sciences, The University of Tokyo, Kashiwa-shi, Chiba, Japan
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43
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Ron R, Fragman-Sapir O, Kadmon R. Dispersal increases ecological selection by increasing effective community size. Proc Natl Acad Sci U S A 2018; 115:11280-11285. [PMID: 30322907 PMCID: PMC6217402 DOI: 10.1073/pnas.1812511115] [Citation(s) in RCA: 22] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022] Open
Abstract
Selection and drift are universally accepted as the cornerstones of evolutionary changes. Recent theories extend this view to ecological changes, arguing that any change in species composition is driven by deterministic fitness differences among species (enhancing selection) and/or stochasticity in birth and death rates of individuals within species (enhancing drift). These forces have contrasting effects on the predictability of ecological dynamics, and thus understanding the factors affecting their relative importance is crucial for understanding ecological dynamics. Here we test the hypothesis that dispersal increases the relative importance of ecological selection by increasing the effective size of the community (i.e., the size relevant for competitive interactions and drift). According to our hypothesis, dispersal increases the effective size of the community by mixing individuals from different localities. This effect diminishes the relative importance of demographic stochasticity, thereby reducing drift and increasing the relative importance of selective forces as drivers of species composition. We tested our hypothesis, which we term the "effective community size" hypothesis, using two independent experiments focusing on annual plants: a field experiment in which we manipulated the magnitude of dispersal and a mesocosm experiment in which we directly manipulated the effective size of the communities. Both experiments, as well as related model simulations, were consistent with the hypothesis that increasing dispersal increases the role of selective forces as drivers of species composition. This finding has important implications for our understanding of the fundamental forces affecting community dynamics, as well as the management of species diversity, particularly in patchy and fragmented environments.
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Affiliation(s)
- Ronen Ron
- Department of Ecology, Evolution, and Behavior, The Hebrew University of Jerusalem, Givat Ram, 91904 Jerusalem, Israel
| | - Ori Fragman-Sapir
- Jerusalem Botanical Gardens, The Hebrew University of Jerusalem, Givat Ram, 91904 Jerusalem, Israel
| | - Ronen Kadmon
- Department of Ecology, Evolution, and Behavior, The Hebrew University of Jerusalem, Givat Ram, 91904 Jerusalem, Israel;
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44
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45
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Lin W, Pennings SC. Predator-prey interactions in a ladybeetle-aphid system depend on spatial scale. Ecol Evol 2018; 8:6537-6546. [PMID: 30038755 PMCID: PMC6053568 DOI: 10.1002/ece3.4117] [Citation(s) in RCA: 5] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2017] [Revised: 02/09/2018] [Accepted: 03/22/2018] [Indexed: 11/29/2022] Open
Abstract
The outcome of species interactions may manifest differently at different spatial scales; therefore, our interpretation of observed interactions will depend on the scale at which observations are made. For example, in ladybeetle-aphid systems, the results from small-scale cage experiments usually cannot be extrapolated to landscape-scale field observations. To understand how ladybeetle-aphid interactions change across spatial scales, we evaluated predator-prey interactions in an experimental system. The experimental habitat consisted of 81 potted plants and was manipulated to facilitate analysis across four spatial scales. We also simulated a spatially explicit metacommunity model parallel to the experiment. In the experiment, we found that the negative effect of ladybeetles on aphids decreased with increasing spatial scales. This pattern can be explained by ladybeetles strongly suppressing aphids at small scales, but not colonizing distant patches fast enough to suppress aphids at larger scales. In the experiment, the positive effects of aphids on ladybeetles were strongest at three-plant scale. In a model scenario where predators did not have demographic dynamics, we found, consistent with the experiment, that both the effects of ladybeetles on aphids and the effects of aphids on ladybeetles decreased with increasing spatial scales. These patterns suggest that dispersal was the primary cause of ladybeetle population dynamics in our experiment: aphids increased ladybeetle numbers at smaller scales because ladybeetles stayed in a patch longer and performed area-restricted searches after encountering aphids; these behaviors did not affect ladybeetle numbers at larger spatial scales. The parallel experimental and model results illustrate how predator-prey interactions can change across spatial scales, suggesting that our interpretation of observed predator-prey dynamics would differ if observations were made at different scales. This study demonstrates how studying ecological interactions at a range of scales can help link the results of small-scale ecological experiments to landscape-scale ecological problems.
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Affiliation(s)
- Wei‐Ting Lin
- Department of Biology and BiochemistryUniversity of HoustonHoustonTexasUSA
| | - Steven C. Pennings
- Department of Biology and BiochemistryUniversity of HoustonHoustonTexasUSA
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46
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McLeish MJ, Fraile A, García-Arenal F. Ecological Complexity in Plant Virus Host Range Evolution. Adv Virus Res 2018; 101:293-339. [PMID: 29908592 DOI: 10.1016/bs.aivir.2018.02.009] [Citation(s) in RCA: 24] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
The host range of a plant virus is the number of species in which it can reproduce. Most studies of plant virus host range evolution have focused on the genetics of host-pathogen interactions. However, the distribution and abundance of plant viruses and their hosts do not always overlap, and these spatial and temporal discontinuities in plant virus-host interactions can result in various ecological processes that shape host range evolution. Recent work shows that the distributions of pathogenic and resistant genotypes, vectors, and other resources supporting transmission vary widely in the environment, producing both expected and unanticipated patterns. The distributions of all of these factors are influenced further by competitive effects, natural enemies, anthropogenic disturbance, the abiotic environment, and herbivory to mention some. We suggest the need for further development of approaches that (i) explicitly consider resource use and the abiotic and biotic factors that affect the strategies by which viruses exploit resources; and (ii) are sensitive across scales. Host range and habitat specificity will largely determine which phyla are most likely to be new hosts, but predicting which host and when it is likely to be infected is enormously challenging because it is unclear how environmental heterogeneity affects the interactions of viruses and hosts.
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Affiliation(s)
- Michael J McLeish
- Centro de Biotecnología y Genómica de Plantas UPM-INIA, and E.T.S.I. Agrícola, Alimentaria y de Biosistemas, Campus de Montegancedo, Universidad Politécnica de Madrid, Madrid, Spain
| | - Aurora Fraile
- Centro de Biotecnología y Genómica de Plantas UPM-INIA, and E.T.S.I. Agrícola, Alimentaria y de Biosistemas, Campus de Montegancedo, Universidad Politécnica de Madrid, Madrid, Spain
| | - Fernando García-Arenal
- Centro de Biotecnología y Genómica de Plantas UPM-INIA, and E.T.S.I. Agrícola, Alimentaria y de Biosistemas, Campus de Montegancedo, Universidad Politécnica de Madrid, Madrid, Spain.
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47
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Wittmann MJ, Fukami T. Eco-Evolutionary Buffering: Rapid Evolution Facilitates Regional Species Coexistence despite Local Priority Effects. Am Nat 2018; 191:E171-E184. [PMID: 29750553 DOI: 10.1086/697187] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022]
Abstract
Inhibitory priority effects, in which early-arriving species exclude competing species from local communities, are thought to enhance regional species diversity via community divergence. Theory suggests, however, that these same priority effects make it difficult for species to coexist in the region unless individuals are continuously supplied from an external species pool, often an unrealistic assumption. Here we develop an eco-evolutionary hypothesis to solve this conundrum. We build a metacommunity model in which local priority effects occur between two species via interspecific interference. Within each species there are two genotypes: one is more resistant to interspecific interference than the other but pays a fitness cost for its resistance. Because of this trade-off, species evolve to become less resistant as they become regionally more common. Rare species can then invade some local patches and consequently recover in regional frequency. This "eco-evolutionary buffering" enables the regional coexistence of species despite local priority effects, even in the absence of immigration from an external species pool. Our model predicts that eco-evolutionary buffering is particularly effective when local communities are small and connected by infrequent dispersal.
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48
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Svensson EI, Gómez-Llano MA, Torres AR, Bensch HM. Frequency Dependence and Ecological Drift Shape Coexistence of Species with Similar Niches. Am Nat 2018; 191:691-703. [PMID: 29750557 DOI: 10.1086/697201] [Citation(s) in RCA: 25] [Impact Index Per Article: 4.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
Abstract
The coexistence of ecologically similar species might be counteracted by ecological drift and demographic stochasticity, both of which erode local diversity. With niche differentiation, species can be maintained through performance trade-offs between environments, but trade-offs are difficult to invoke for species with similar ecological niches. Such similar species might then go locally extinct due to stochastic ecological drift, but there is little empirical evidence for such processes. Previous studies have relied on biogeographical surveys and inferred process from pattern, while experimental field investigations of ecological drift are rare. Mechanisms preserving local species diversity, such as frequency dependence (e.g., rare-species advantages), can oppose local ecological drift, but the combined effects of ecological drift and such counteracting forces have seldom been investigated. Here, we investigate mechanisms between coexistence of ecologically similar but strongly sexually differentiated damselfly species (Calopteryx virgo and Calopteryx splendens). Combining field surveys, behavioral observations, experimental manipulations of species frequencies and densities, and simulation modeling, we demonstrate that species coexistence is shaped by the opposing forces of ecological drift and negative frequency dependence (rare-species advantage), generated by interference competition. Stochastic and deterministic processes therefore jointly shape coexistence. The role of negative frequency dependence in delaying the loss of ecologically similar species, such as those formed by sexual selection, should therefore be considered in community assembly, macroecology, macroevolution, and biogeography.
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Staude IR, Vélez-Martin E, Andrade BO, Podgaiski LR, Boldrini II, Mendonça M, Pillar VD, Overbeck GE. Local biodiversity erosion in south Brazilian grasslands under moderate levels of landscape habitat loss. J Appl Ecol 2018. [DOI: 10.1111/1365-2664.13067] [Citation(s) in RCA: 28] [Impact Index Per Article: 4.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2022]
Affiliation(s)
- Ingmar R. Staude
- Graduate Program in Botany; Universidade Federal do Rio Grande do Sul; Porto Alegre RS Brazil
| | - Eduardo Vélez-Martin
- Graduate Program in Ecology; Universidade Federal do Rio Grande do Sul; Porto Alegre RS Brazil
| | - Bianca O. Andrade
- Graduate Program in Botany; Universidade Federal do Rio Grande do Sul; Porto Alegre RS Brazil
| | | | - Ilsi I. Boldrini
- Graduate Program in Botany; Universidade Federal do Rio Grande do Sul; Porto Alegre RS Brazil
- Department of Botany; Universidade Federal do Rio Grande do Sul; Porto Alegre RS Brazil
| | - Milton Mendonça
- Graduate Program in Ecology; Universidade Federal do Rio Grande do Sul; Porto Alegre RS Brazil
- Department of Ecology; Universidade Federal do Rio Grande do Sul; Porto Alegre RS Brazil
| | - Valério D. Pillar
- Graduate Program in Ecology; Universidade Federal do Rio Grande do Sul; Porto Alegre RS Brazil
- Department of Ecology; Universidade Federal do Rio Grande do Sul; Porto Alegre RS Brazil
| | - Gerhard E. Overbeck
- Graduate Program in Botany; Universidade Federal do Rio Grande do Sul; Porto Alegre RS Brazil
- Department of Botany; Universidade Federal do Rio Grande do Sul; Porto Alegre RS Brazil
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50
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Chen X, Adams B, Layne M, Swarzenski C, Norris D, Hooper-Bùi L. Effects of isolation on ant assemblages depend on microhabitat. Ecosphere 2017. [DOI: 10.1002/ecs2.2049] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022] Open
Affiliation(s)
- Xuan Chen
- College of the Coast and Environment; Louisiana State University; Baton Rouge Louisiana 70803 USA
| | - Benjamin Adams
- Department of Biology; University of Louisville; 139 Life Science Building Louisville Kentucky 40292 USA
| | - Michael Layne
- College of the Coast and Environment; Louisiana State University; Baton Rouge Louisiana 70803 USA
| | - Christopher Swarzenski
- U.S. Geological Survey; Lower Mississippi-Gulf Water Science Center; 3535 S. Sherwood Forest Blvd. Baton Rouge Louisiana 70816 USA
| | - David Norris
- School of Renewable Natural Resources; Louisiana State University; Baton Rouge Louisiana 70803 USA
| | - Linda Hooper-Bùi
- College of the Coast and Environment; Louisiana State University; Baton Rouge Louisiana 70803 USA
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