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Reyes-Loaiza V, De La Roche J, Hernandez-Renjifo E, Idárraga O, Da Silva M, Valencia DP, Ghneim-Herrera T, Jaramillo-Botero A. Laser-induced graphene electrochemical sensor for quantitative detection of phytotoxic aluminum ions (Al 3+) in soils extracts. Sci Rep 2024; 14:5772. [PMID: 38459204 PMCID: PMC10923804 DOI: 10.1038/s41598-024-56212-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Accepted: 03/04/2024] [Indexed: 03/10/2024] Open
Abstract
Aluminum in its Al3+ form is a metal that inhibits plant growth, especially in acidic soils (pH < 5.5). Rapid and accurate quantitative detection of Al3+ in agricultural soils is critical for the timely implementation of remediation strategies. However, detecting metal ions requires time-consuming preparation of samples, using expensive instrumentation and non-portable spectroscopic techniques. As an alternative, electrochemical sensors offer a cost-effective and minimally invasive approach for in situ quantification of metal ions. Here, we developed and validated an electrochemical sensor based on bismuth-modified laser-induced graphene (LIG) electrodes for Al3+ quantitative detection in a range relevant to agriculture (1-300 ppm). Our results show a linear Al3+ detection range of 1.07-300 ppm with a variation coefficient of 5.3%, even in the presence of other metal ions (Pb2+, Cd2+, and Cu2+). The sensor offers a limit of detection (LOD) of 0.34 ppm and a limit of quantification (LOQ) of 1.07 ppm. We compared its accuracy for soil samples with pH < 4.8 to within 89-98% of spectroscopic methods (ICP-OES) and potentiometric titration. This technology's portability, easy to use, and cost-effectiveness make it a promising candidate for in situ quantification and remediation of Al3+ in agricultural soils and other complex matrices.
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Affiliation(s)
- Vanessa Reyes-Loaiza
- iOmicas Research Institute, Pontificia Universidad Javeriana, Cali, Valle del Cauca, 760031, Colombia
| | - Jhonattan De La Roche
- iOmicas Research Institute, Pontificia Universidad Javeriana, Cali, Valle del Cauca, 760031, Colombia
| | - Erick Hernandez-Renjifo
- iOmicas Research Institute, Pontificia Universidad Javeriana, Cali, Valle del Cauca, 760031, Colombia
| | - Orlando Idárraga
- iOmicas Research Institute, Pontificia Universidad Javeriana, Cali, Valle del Cauca, 760031, Colombia
- Department of Natural and Exact Sciences, Universidad del Valle, Cali, Valle del Cauca, 760031, Colombia
| | - Mayesse Da Silva
- Multifunctional Landscapes, Alliance Bioversity-CIAT, Cali-Palmira, Valle del Cauca, 763537, Colombia
| | - Drochss P Valencia
- iOmicas Research Institute, Pontificia Universidad Javeriana, Cali, Valle del Cauca, 760031, Colombia
| | - Thaura Ghneim-Herrera
- iOmicas Research Institute, Pontificia Universidad Javeriana, Cali, Valle del Cauca, 760031, Colombia
- Department of Biological Sciences, Universidad ICESI, Cali, Valle del Cauca, 760031, Colombia
| | - Andres Jaramillo-Botero
- iOmicas Research Institute, Pontificia Universidad Javeriana, Cali, Valle del Cauca, 760031, Colombia.
- Chemistry and Chemical Engineering Division, California Institute of Technology, 1200 E California Blvd, Mail Code 139-74, Pasadena, CA, 91125, USA.
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DeLoose M, Clúa J, Cho H, Zheng L, Masmoudi K, Desnos T, Krouk G, Nussaume L, Poirier Y, Rouached H. Recent advances in unraveling the mystery of combined nutrient stress in plants. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 117:1764-1780. [PMID: 37921230 DOI: 10.1111/tpj.16511] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/07/2023] [Revised: 10/05/2023] [Accepted: 10/11/2023] [Indexed: 11/04/2023]
Abstract
Efficiently regulating growth to adapt to varying resource availability is crucial for organisms, including plants. In particular, the acquisition of essential nutrients is vital for plant development, as a shortage of just one nutrient can significantly decrease crop yield. However, plants constantly experience fluctuations in the presence of multiple essential mineral nutrients, leading to combined nutrient stress conditions. Unfortunately, our understanding of how plants perceive and respond to these multiple stresses remains limited. Unlocking this mystery could provide valuable insights and help enhance plant nutrition strategies. This review focuses specifically on the regulation of phosphorous homeostasis in plants, with a primary emphasis on recent studies that have shed light on the intricate interactions between phosphorous and other essential elements, such as nitrogen, iron, and zinc, as well as non-essential elements like aluminum and sodium. By summarizing and consolidating these findings, this review aims to contribute to a better understanding of how plants respond to and cope with combined nutrient stress.
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Affiliation(s)
- Megan DeLoose
- The Plant Resilience Institute, Michigan State University, East Lansing, Michigan, 48824, USA
- Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, Michigan, 48824, USA
| | - Joaquin Clúa
- Department of Plant Molecular Biology, University of Lausanne, Biophore Building, 1015, Lausanne, Switzerland
| | - Huikyong Cho
- The Plant Resilience Institute, Michigan State University, East Lansing, Michigan, 48824, USA
- Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, Michigan, 48824, USA
| | - Luqing Zheng
- College of Life Sciences, Nanjing Agricultural University, Nanjing, Jiangsu, 210095, China
| | - Khaled Masmoudi
- Department of Integrative Agriculture, College of Agriculture and Veterinary Medicine, United Arab Emirates University, Al-Ain, Abu Dhabi, United Arab Emirates
| | - Thierry Desnos
- Aix Marseille Univ, CEA, CNRS, BIAM, EBMP, UMR7265, Cité des énergies, 13115, Saint-Paul-lez-Durance, France
| | - Gabriel Krouk
- IPSiM, Univ. Montpellier, CNRS, INRAE, Montpellier, France
| | - Laurent Nussaume
- Aix Marseille Univ, CEA, CNRS, BIAM, EBMP, UMR7265, Cité des énergies, 13115, Saint-Paul-lez-Durance, France
| | - Yves Poirier
- Department of Plant Molecular Biology, University of Lausanne, Biophore Building, 1015, Lausanne, Switzerland
| | - Hatem Rouached
- The Plant Resilience Institute, Michigan State University, East Lansing, Michigan, 48824, USA
- Department of Plant, Soil, and Microbial Sciences, Michigan State University, East Lansing, Michigan, 48824, USA
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3
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Agrahari RK, Kobayashi Y, Enomoto T, Miyachi T, Sakuma M, Fujita M, Ogata T, Fujita Y, Iuchi S, Kobayashi M, Yamamoto YY, Koyama H. STOP1-regulated SMALL AUXIN UP RNA55 ( SAUR55) is involved in proton/malate co-secretion for Al tolerance in Arabidopsis. PLANT DIRECT 2024; 8:e557. [PMID: 38161730 PMCID: PMC10755337 DOI: 10.1002/pld3.557] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 04/19/2023] [Revised: 10/25/2023] [Accepted: 11/29/2023] [Indexed: 01/03/2024]
Abstract
Proton (H+) release is linked to aluminum (Al)-enhanced organic acids (OAs) excretion from the roots under Al rhizotoxicity in plants. It is well-reported that the Al-enhanced organic acid excretion mechanism is regulated by SENSITIVE TO PROTON RHIZOTOXICITY1 (STOP1), a zinc-finger TF that regulates major Al tolerance genes. However, the mechanism of H+ release linked to OAs excretion under Al stress has not been fully elucidated. Recent physiological and molecular-genetic studies have implicated the involvement of SMALL AUXIN UP RNAs (SAURs) in the activation of plasma membrane H+-ATPases for stress responses in plants. We hypothesized that STOP1 is involved in the regulation of Al-responsive SAURs, which may contribute to the co-secretion of protons and malate under Al stress conditions. In our transcriptome analysis of the roots of the stop1 (sensitive to proton rhizotoxicity1) mutant, we found that STOP1 regulates the transcription of one of the SAURs, namely SAUR55. Furthermore, we observed that the expression of SAUR55 was induced by Al and repressed in the STOP1 T-DNA insertion knockout (KO) mutant (STOP1-KO). Through in silico analysis, we identified a functional STOP1-binding site in the promoter of SAUR55. Subsequent in vitro and in vivo studies confirmed that STOP1 directly binds to the promoter of SAUR55. This suggests that STOP1 directly regulates the expression of SAUR55 under Al stress. We next examined proton release in the rhizosphere and malate excretion in the T-DNA insertion KO mutant of SAUR55 (saur55), in conjunction with STOP1-KO. Both saur55 and STOP1-KO suppressed rhizosphere acidification and malate release under Al stress. Additionally, the root growth of saur55 was sensitive to Al-containing media. In contrast, the overexpressed line of SAUR55 enhanced rhizosphere acidification and malate release, leading to increased Al tolerance. These associations with Al tolerance were also observed in natural variations of Arabidopsis. These findings demonstrate that transcriptional regulation of SAUR55 by STOP1 positively regulates H+ excretion via PM H+-ATPase 2 which enhances Al tolerance by malate secretion from the roots of Arabidopsis. The activation of PM H+-ATPase 2 by SAUR55 was suggested to be due to PP2C.D2/D5 inhibition by interaction on the plasma membrane with its phosphatase. Furthermore, RNAi-suppression of NtSTOP1 in tobacco shows suppression of rhizosphere acidification under Al stress, which was associated with the suppression of SAUR55 orthologs, which are inducible by Al in tobacco. It suggests that transcriptional regulation of Al-inducible SAURs by STOP1 plays a critical role in OAs excretion in several plant species as an Al tolerance mechanism.
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Affiliation(s)
| | | | - Takuo Enomoto
- Faculty of Applied Biological SciencesGifu UniversityGifuJapan
| | - Tasuku Miyachi
- Faculty of Applied Biological SciencesGifu UniversityGifuJapan
| | - Marie Sakuma
- Mass Spectrometry and Microscopy UnitRIKEN Center for Sustainable Resource ScienceTsukubaIbarakiJapan
| | - Miki Fujita
- Mass Spectrometry and Microscopy UnitRIKEN Center for Sustainable Resource ScienceTsukubaIbarakiJapan
| | - Takuya Ogata
- Biological Resources and Post‐harvest DivisionJapan International Research Center for Agricultural Sciences (JIRCAS)TsukubaIbarakiJapan
| | - Yasunari Fujita
- Biological Resources and Post‐harvest DivisionJapan International Research Center for Agricultural Sciences (JIRCAS)TsukubaIbarakiJapan
- Graduate School of Life and Environmental SciencesUniversity of TsukubaTsukubaIbarakiJapan
| | - Satoshi Iuchi
- Experimental Plant DivisionRIKEN BioResource Research CenterTsukubaIbarakiJapan
| | - Masatomo Kobayashi
- Experimental Plant DivisionRIKEN BioResource Research CenterTsukubaIbarakiJapan
| | | | - Hiroyuki Koyama
- Faculty of Applied Biological SciencesGifu UniversityGifuJapan
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4
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Dabravolski SA, Isayenkov SV. Recent Updates on ALMT Transporters' Physiology, Regulation, and Molecular Evolution in Plants. PLANTS (BASEL, SWITZERLAND) 2023; 12:3167. [PMID: 37687416 PMCID: PMC10490231 DOI: 10.3390/plants12173167] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/05/2023] [Revised: 08/18/2023] [Accepted: 08/29/2023] [Indexed: 09/10/2023]
Abstract
Aluminium toxicity and phosphorus deficiency in soils are the main interconnected problems of modern agriculture. The aluminium-activated malate transporters (ALMTs) comprise a membrane protein family that demonstrates various physiological functions in plants, such as tolerance to environmental Al3+ and the regulation of stomatal movement. Over the past few decades, the regulation of ALMT family proteins has been intensively studied. In this review, we summarise the current knowledge about this transporter family and assess their involvement in diverse physiological processes and comprehensive regulatory mechanisms. Furthermore, we have conducted a thorough bioinformatic analysis to decipher the functional importance of conserved residues, structural components, and domains. Our phylogenetic analysis has also provided new insights into the molecular evolution of ALMT family proteins, expanding their scope beyond the plant kingdom. Lastly, we have formulated several outstanding questions and research directions to further enhance our understanding of the fundamental role of ALMT proteins and to assess their physiological functions.
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Affiliation(s)
- Siarhei A. Dabravolski
- Department of Biotechnology Engineering, Braude Academic College of Engineering, Snunit 51, Karmiel 2161002, Israel;
| | - Stanislav V. Isayenkov
- Institute of Agricultural and Nutritional Sciences, Martin Luther University Halle-Wittenberg, Betty-Heimann-Strasse 3, 06120 Halle, Germany
- Department of Plant Food Products and Biofortification, Institute of Food Biotechnology and Genomics, The National Academy of Sciences of Ukraine, Osipovskogo Str. 2a, 04123 Kyiv, Ukraine
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5
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Hajiboland R, Panda CK, Lastochkina O, Gavassi MA, Habermann G, Pereira JF. Aluminum Toxicity in Plants: Present and Future. JOURNAL OF PLANT GROWTH REGULATION 2022. [DOI: 10.1007/s00344-022-10866-0] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/09/2022] [Accepted: 10/26/2022] [Indexed: 06/23/2023]
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6
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Graças JP, Jamet E, Lima JE. Advances towards understanding the responses of root cells to acidic stress. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2022; 191:89-98. [PMID: 36195036 DOI: 10.1016/j.plaphy.2022.09.022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/24/2022] [Accepted: 09/23/2022] [Indexed: 06/16/2023]
Abstract
"Acid soil syndrome" is a worldwide phenomenon characterized by low pH (pH < 5.5), scarce nutrient availability (K+, Ca2+, Mg2+, P), and mineral toxicity such as those caused by soluble aluminium (Al) forms. Regardless of the mineral toxicity, the low pH by itself is detrimental to crop development causing striking sensitivity responses such as root growth arrest. However, low pH-induced responses are still poorly understood and underrated. Here, we review and discuss the core evidence about the action of low pH upon specific root zones, distinct cell types, and possible cellular targets (cell wall, plasma membrane, and alternative oxidase). The role of different players in signaling processes leading to low pH-induced responses, such as the STOP transcription factors, the reactive oxygen species (ROS), auxin, ethylene, and components of the antioxidant system, is also addressed. Information at the molecular level is still lacking to link the low pH targets and the subsequent actors that trigger the observed sensitivity responses. Future studies will have to combine genetic tools to identify the signaling processes triggered by low pH, unraveling not only the mechanisms by which low pH affects root cells but also finding new ways to engineer the tolerance of domesticated plants to acidic stress.
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Affiliation(s)
- Jonathas Pereira Graças
- Instituto de Ciências Biológicas, Departamento de Botânica, Plant Physiology Laboratory, Federal University of Minas Gerais, Antonio Carlos, 6627, Bloco I-2, 316, Belo Horizonte, MG, 31270-901, Brazil.
| | - Elisabeth Jamet
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, Toulouse-INP 24, chemin de Borde Rouge 31320 Auzeville-Tolosane, France.
| | - Joni Esrom Lima
- Instituto de Ciências Biológicas, Departamento de Botânica, Plant Physiology Laboratory, Federal University of Minas Gerais, Antonio Carlos, 6627, Bloco I-2, 316, Belo Horizonte, MG, 31270-901, Brazil.
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7
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Koyama H, Huang CF, Piñeros MA, Yamamoto Y. Editorial: Al-Induced and -Activated Signals in Aluminium Resistance. FRONTIERS IN PLANT SCIENCE 2022; 13:925541. [PMID: 35812898 PMCID: PMC9258333 DOI: 10.3389/fpls.2022.925541] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/21/2022] [Accepted: 05/20/2022] [Indexed: 06/15/2023]
Affiliation(s)
| | - Chao-Feng Huang
- Shanghai Center for Plant Stress Biology, Center for Excellence in Molecular Plant Sciences, Chinese Academy of Sciences (CAS), Shanghai, China
| | - Miguel A. Piñeros
- Robert W. Holley Center for Agriculture & Health, USDA Agricultural Research Service (USDA-ARS), Ithaca, NY, United States
| | - Yoko Yamamoto
- Institute of Plant Science and Resources, Okayama University, Kurashiki, Japan
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8
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Abstract
Pinus massoniana is a vital kind of coniferous species rich in rosin. Aluminum stress is a severe problem for P. massoniana growth in acidic soil causing root poisoning. However, the molecular mechanisms of aluminum-responsive are still unclear. We performed a transcriptome analysis of the P. massoniana root in response to aluminum stress. Through WGCNA analysis, we identified 338 early and 743 late response genes to aluminum stress. Gene Ontology analysis found many critical functional pathways, such as carbohydrate binding, cellulase activity, and phenylalanine ammonia-lyase activity. In addition, KEGG analysis revealed a significant enrichment of phenylpropanoid biosynthesis pathways. Further analysis showed that the expression of lignin synthesis genes 4CL, CAD, and COMT were up-regulated, indicating that they may play a crucial role in the process of aluminum tolerance in P. massoniana roots. These results provide method support for studying the regulation mechanism of P. massoniana aluminum stress.
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9
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Agrahari RK, Enomoto T, Ito H, Nakano Y, Yanase E, Watanabe T, Sadhukhan A, Iuchi S, Kobayashi M, Panda SK, Yamamoto YY, Koyama H, Kobayashi Y. Expression GWAS of PGIP1 Identifies STOP1-Dependent and STOP1-Independent Regulation of PGIP1 in Aluminum Stress Signaling in Arabidopsis. FRONTIERS IN PLANT SCIENCE 2021; 12:774687. [PMID: 34975956 PMCID: PMC8719490 DOI: 10.3389/fpls.2021.774687] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 09/12/2021] [Accepted: 11/19/2021] [Indexed: 06/14/2023]
Abstract
To elucidate the unknown regulatory mechanisms involved in aluminum (Al)-induced expression of POLYGALACTURONASE-INHIBITING PROTEIN 1 (PGIP1), which is one of the downstream genes of SENSITIVE TO PROTON RHIZOTOXICITY 1 (STOP1) regulating Al-tolerance genes, we conducted a genome-wide association analysis of gene expression levels (eGWAS) of PGIP1 in the shoots under Al stress using 83 Arabidopsis thaliana accessions. The eGWAS, conducted through a mixed linear model, revealed 17 suggestive SNPs across the genome having the association with the expression level variation in PGIP1. The GWAS-detected SNPs were directly located inside transcription factors and other genes involved in stress signaling, which were expressed in response to Al. These candidate genes carried different expression level and amino acid polymorphisms. Among them, three genes encoding NAC domain-containing protein 27 (NAC027), TRX superfamily protein, and R-R-type MYB protein were associated with the suppression of PGIP1 expression in their mutants, and accordingly, the system affected Al tolerance. We also found the involvement of Al-induced endogenous nitric oxide (NO) signaling, which induces NAC027 and R-R-type MYB genes to regulate PGIP1 expression. In this study, we provide genetic evidence that STOP1-independent NO signaling pathway and STOP1-dependent regulation in phosphoinositide (PI) signaling pathway are involved in the regulation of PGIP1 expression under Al stress.
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Affiliation(s)
| | - Takuo Enomoto
- Faculty of Applied Biological Sciences, Gifu University, Gifu, Japan
| | - Hiroki Ito
- Faculty of Applied Biological Sciences, Gifu University, Gifu, Japan
| | - Yuki Nakano
- Faculty of Applied Biological Sciences, Gifu University, Gifu, Japan
| | - Emiko Yanase
- Faculty of Applied Biological Sciences, Gifu University, Gifu, Japan
| | | | - Ayan Sadhukhan
- Department of Biotechnology, Koneru Lakshmaiah Education Foundation, Guntur, India
| | - Satoshi Iuchi
- Experimental Plant Division, RIKEN BioResource Research Center, Tsukuba, Japan
| | - Masatomo Kobayashi
- Experimental Plant Division, RIKEN BioResource Research Center, Tsukuba, Japan
| | - Sanjib Kumar Panda
- Department of Biochemistry, Central University of Rajasthan, Ajmer, India
| | | | - Hiroyuki Koyama
- Faculty of Applied Biological Sciences, Gifu University, Gifu, Japan
| | - Yuriko Kobayashi
- Faculty of Applied Biological Sciences, Gifu University, Gifu, Japan
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10
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Ye JY, Tian WH, Zhou M, Zhu QY, Du WX, Zhu YX, Liu XX, Lin XY, Zheng SJ, Jin CW. STOP1 activates NRT1.1-mediated nitrate uptake to create a favorable rhizospheric pH for plant adaptation to acidity. THE PLANT CELL 2021; 33:3658-3674. [PMID: 34524462 PMCID: PMC8643680 DOI: 10.1093/plcell/koab226] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/25/2021] [Accepted: 09/06/2021] [Indexed: 05/31/2023]
Abstract
Protons (H+) in acidic soils arrest plant growth. However, the mechanisms by which plants optimize their biological processes to diminish the unfavorable effects of H+ stress remain largely unclear. Here, we showed that in the roots of Arabidopsis thaliana, the C2H2-type transcription factor STOP1 in the nucleus was enriched by low pH in a nitrate-independent manner, with the spatial expression pattern of NITRATE TRANSPORTER 1.1 (NRT1.1) established by low pH required the action of STOP1. Additionally, the nrt1.1 and stop1 mutants, as well as the nrt1.1 stop1 double mutant, had a similar hypersensitive phenotype to low pH, indicating that STOP1 and NRT1.1 function in the same pathway for H+ tolerance. Molecular assays revealed that STOP1 directly bound to the promoter of NRT1.1 to activate its transcription in response to low pH, thus upregulating its nitrate uptake. This action improved the nitrogen use efficiency (NUE) of plants and created a favorable rhizospheric pH for root growth by enhancing H+ depletion in the rhizosphere. Consequently, the constitutive expression of NRT1.1 in stop1 mutants abolished the hypersensitive phenotype to low pH. These results demonstrate that STOP1-NRT1.1 is a key module for plants to optimize NUE and ensure better plant growth in acidic media.
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Affiliation(s)
- Jia Yuan Ye
- State Key Laboratory of Plant Physiology and Biochemistry, College of Natural Resources and Environmental Science, Zhejiang University, Hangzhou 310058, China
| | - Wen Hao Tian
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Science, Zhejiang University, Hangzhou 310058, China
| | - Miao Zhou
- State Key Laboratory of Plant Physiology and Biochemistry, College of Natural Resources and Environmental Science, Zhejiang University, Hangzhou 310058, China
| | - Qing Yang Zhu
- State Key Laboratory of Plant Physiology and Biochemistry, College of Natural Resources and Environmental Science, Zhejiang University, Hangzhou 310058, China
| | - Wen Xin Du
- State Key Laboratory of Plant Physiology and Biochemistry, College of Natural Resources and Environmental Science, Zhejiang University, Hangzhou 310058, China
| | - Ya Xin Zhu
- State Key Laboratory of Plant Physiology and Biochemistry, College of Natural Resources and Environmental Science, Zhejiang University, Hangzhou 310058, China
| | - Xing Xing Liu
- State Key Laboratory of Plant Physiology and Biochemistry, College of Natural Resources and Environmental Science, Zhejiang University, Hangzhou 310058, China
| | - Xian Yong Lin
- State Key Laboratory of Plant Physiology and Biochemistry, College of Natural Resources and Environmental Science, Zhejiang University, Hangzhou 310058, China
| | - Shao Jian Zheng
- State Key Laboratory of Plant Physiology and Biochemistry, College of Life Science, Zhejiang University, Hangzhou 310058, China
| | - Chong Wei Jin
- State Key Laboratory of Plant Physiology and Biochemistry, College of Natural Resources and Environmental Science, Zhejiang University, Hangzhou 310058, China
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Sadhukhan A, Kobayashi Y, Iuchi S, Koyama H. Synergistic and antagonistic pleiotropy of STOP1 in stress tolerance. TRENDS IN PLANT SCIENCE 2021; 26:1014-1022. [PMID: 34253485 DOI: 10.1016/j.tplants.2021.06.011] [Citation(s) in RCA: 22] [Impact Index Per Article: 7.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/09/2021] [Revised: 06/15/2021] [Accepted: 06/17/2021] [Indexed: 05/29/2023]
Abstract
SENSITIVE TO PROTON RHIZOTOXICITY 1 (STOP1) is a master transcription factor (TF) that regulates genes encoding proteins critical for cellular pH homeostasis. STOP1 also causes pleiotropic effects in both roots and shoots associated with various stress tolerances. STOP1-regulated genes in roots synergistically confer tolerance to coexisting stress factors in acid soil, and root-architecture remodeling for superior phosphorus acquisition. Additionally, STOP1 confers salt tolerance to roots under low-potassium conditions. By contrast, STOP1 antagonistically functions in shoots to promote hypoxia tolerance but to suppress drought tolerance. In this review, we discuss how these synergetic- and antagonistic-pleiotropic effects indicate that STOP1 is a central hub of stress regulation and that the harmonization of STOP1-regulated traits is essential for plant adaptation to various environments.
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Affiliation(s)
- Ayan Sadhukhan
- Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
| | - Yuriko Kobayashi
- Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
| | - Satoshi Iuchi
- Experimental Plant Division, RIKEN Bioresource Research Center, 3-1-1 Koyadai, Tsukuba, 305-0074, Japan
| | - Hiroyuki Koyama
- Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan.
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12
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Co-expression network analysis of acidic-responsive genes in Arabidopsis thaliana signifies hub genes expression and their key role assessment for acidity tolerance in Oryza sativa L. Biologia (Bratisl) 2021. [DOI: 10.1007/s11756-021-00837-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/20/2022]
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13
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Genome-Wide Association Study of Natural Variation in Arabidopsis Exposed to Acid Mine Drainage Toxicity and Validation of Associated Genes with Reverse Genetics. PLANTS 2021; 10:plants10020191. [PMID: 33498421 PMCID: PMC7909446 DOI: 10.3390/plants10020191] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 12/31/2020] [Revised: 01/15/2021] [Accepted: 01/18/2021] [Indexed: 11/16/2022]
Abstract
Acid mine drainage (AMD) is a huge environmental problem in mountain-top mining regions worldwide, including the Appalachian Mountains in the United States. This study applied a genome-wide association study (GWAS) to uncover genomic loci in Arabidopsis associated with tolerance to AMD toxicity. We characterized five major root phenotypes—cumulative root length, average root diameter, root surface area, root volume, and primary root length—in 180 Arabidopsis accessions in response to AMD-supplemented growth medium. GWAS of natural variation in the panel revealed genes associated with tolerance to an acidic environment. Most of these genes were transcription factors, anion/cation transporters, metal transporters, and unknown proteins. Two T-DNA insertion mutants, At1g63005 (miR399b) and At2g05635 (DEAD helicase RAD3), showed enhanced acidity tolerance. Our GWAS and the reverse genetic approach revealed genes involved in conferring tolerance to coal AMD. Our results indicated that proton resistance in hydroponic conditions could be an important index to improve plant growth in acidic soil, at least in acid-sensitive plant species.
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14
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Sadhukhan A, Agrahari RK, Wu L, Watanabe T, Nakano Y, Panda SK, Koyama H, Kobayashi Y. Expression genome-wide association study identifies that phosphatidylinositol-derived signalling regulates ALUMINIUM SENSITIVE3 expression under aluminium stress in the shoots of Arabidopsis thaliana. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2021; 302:110711. [PMID: 33288018 DOI: 10.1016/j.plantsci.2020.110711] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/17/2020] [Revised: 10/02/2020] [Accepted: 10/04/2020] [Indexed: 06/12/2023]
Abstract
To identify unknown regulatory mechanisms leading to aluminium (Al)-induction of the Al tolerance gene ALS3, we conducted an expression genome-wide association study (eGWAS) for ALS3 in the shoots of 95 Arabidopsis thaliana accessions in the presence of Al. The eGWAS was conducted using a mixed linear model with 145,940 genome-wide single nucleotide polymorphisms (SNPs) and the association results were validated using reverse genetics. We found that many SNPs from the eGWAS were associated with genes related to phosphatidylinositol metabolism as well as stress signal transduction, including Ca2+signals, inter-connected in a co-expression network. Of these, PLC9, CDPK32, ANAC071, DIR1, and a hypothetical protein (AT4G10470) possessed amino acid sequence/ gene expression level polymorphisms that were significantly associated with ALS3 expression level variation. Furthermore, T-DNA insertion mutants of PLC9, CDPK32, and ANAC071 suppressed shoot ALS3 expression in the presence of Al. This study clarified the regulatory mechanisms of ALS3 expression in the shoot and provided genetic evidence of the involvement of phosphatidylinositol-derived signal transduction under Al stress.
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Affiliation(s)
- Ayan Sadhukhan
- Applied Biological Sciences, Gifu University, Yanagido 1-1, Gifu, Gifu 501-1193, Japan
| | - Raj Kishan Agrahari
- Applied Biological Sciences, Gifu University, Yanagido 1-1, Gifu, Gifu 501-1193, Japan
| | - Liujie Wu
- Applied Biological Sciences, Gifu University, Yanagido 1-1, Gifu, Gifu 501-1193, Japan
| | - Toshihiro Watanabe
- Research Faculty of Agriculture, Hokkaido University, Kita-9, Nishi-9, Kitaku, Sapporo, 060-8589, Japan
| | - Yuki Nakano
- Applied Biological Sciences, Gifu University, Yanagido 1-1, Gifu, Gifu 501-1193, Japan
| | - Sanjib Kumar Panda
- Department of Biochemistry, Central University of Rajasthan, Rajasthan 305817, India
| | - Hiroyuki Koyama
- Applied Biological Sciences, Gifu University, Yanagido 1-1, Gifu, Gifu 501-1193, Japan
| | - Yuriko Kobayashi
- Applied Biological Sciences, Gifu University, Yanagido 1-1, Gifu, Gifu 501-1193, Japan.
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15
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Barros VA, Chandnani R, de Sousa SM, Maciel LS, Tokizawa M, Guimaraes CT, Magalhaes JV, Kochian LV. Root Adaptation via Common Genetic Factors Conditioning Tolerance to Multiple Stresses for Crops Cultivated on Acidic Tropical Soils. FRONTIERS IN PLANT SCIENCE 2020; 11:565339. [PMID: 33281841 PMCID: PMC7688899 DOI: 10.3389/fpls.2020.565339] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/24/2020] [Accepted: 10/20/2020] [Indexed: 06/01/2023]
Abstract
Crop tolerance to multiple abiotic stresses has long been pursued as a Holy Grail in plant breeding efforts that target crop adaptation to tropical soils. On tropical, acidic soils, aluminum (Al) toxicity, low phosphorus (P) availability and drought stress are the major limitations to yield stability. Molecular breeding based on a small suite of pleiotropic genes, particularly those with moderate to major phenotypic effects, could help circumvent the need for complex breeding designs and large population sizes aimed at selecting transgressive progeny accumulating favorable alleles controlling polygenic traits. The underlying question is twofold: do common tolerance mechanisms to Al toxicity, P deficiency and drought exist? And if they do, will they be useful in a plant breeding program that targets stress-prone environments. The selective environments in tropical regions are such that multiple, co-existing regulatory networks may drive the fixation of either distinctly different or a smaller number of pleiotropic abiotic stress tolerance genes. Recent studies suggest that genes contributing to crop adaptation to acidic soils, such as the major Arabidopsis Al tolerance protein, AtALMT1, which encodes an aluminum-activated root malate transporter, may influence both Al tolerance and P acquisition via changes in root system morphology and architecture. However, trans-acting elements such as transcription factors (TFs) may be the best option for pleiotropic control of multiple abiotic stress genes, due to their small and often multiple binding sequences in the genome. One such example is the C2H2-type zinc finger, AtSTOP1, which is a transcriptional regulator of a number of Arabidopsis Al tolerance genes, including AtMATE and AtALMT1, and has been shown to activate AtALMT1, not only in response to Al but also low soil P. The large WRKY family of transcription factors are also known to affect a broad spectrum of phenotypes, some of which are related to acidic soil abiotic stress responses. Hence, we focus here on signaling proteins such as TFs and protein kinases to identify, from the literature, evidence for unifying regulatory networks controlling Al tolerance, P efficiency and, also possibly drought tolerance. Particular emphasis will be given to modification of root system morphology and architecture, which could be an important physiological "hub" leading to crop adaptation to multiple soil-based abiotic stress factors.
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Affiliation(s)
- Vanessa A. Barros
- Embrapa Maize and Sorghum, Sete Lagoas, Brazil
- Departamento de Biologia Geral, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil
| | - Rahul Chandnani
- Global Institute for Food Security, University of Saskatchewan, Saskatoon, SK, Canada
| | | | - Laiane S. Maciel
- Embrapa Maize and Sorghum, Sete Lagoas, Brazil
- Global Institute for Food Security, University of Saskatchewan, Saskatoon, SK, Canada
| | - Mutsutomo Tokizawa
- Global Institute for Food Security, University of Saskatchewan, Saskatoon, SK, Canada
| | | | - Jurandir V. Magalhaes
- Embrapa Maize and Sorghum, Sete Lagoas, Brazil
- Departamento de Biologia Geral, Universidade Federal de Minas Gerais, Belo Horizonte, Brazil
| | - Leon V. Kochian
- Global Institute for Food Security, University of Saskatchewan, Saskatoon, SK, Canada
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16
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Graças JP, Ranocha P, Vitorello VA, Savelli B, Jamet E, Dunand C, Burlat V. The Class III Peroxidase Encoding Gene AtPrx62 Positively and Spatiotemporally Regulates the Low pH-Induced Cell Death in Arabidopsis thaliana Roots. Int J Mol Sci 2020; 21:ijms21197191. [PMID: 33003393 PMCID: PMC7582640 DOI: 10.3390/ijms21197191] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2020] [Revised: 09/23/2020] [Accepted: 09/25/2020] [Indexed: 12/15/2022] Open
Abstract
Exogenous low pH stress causes cell death in root cells, limiting root development, and agricultural production. Different lines of evidence suggested a relationship with cell wall (CW) remodeling players. We investigated whether class III peroxidase (CIII Prx) total activity, CIII Prx candidate gene expression, and reactive oxygen species (ROS) could modify CW structure during low pH-induced cell death in Arabidopsis thaliana roots. Wild-type roots displayed a good spatio-temporal correlation between the low pH-induced cell death and total CIII Prx activity in the early elongation (EZs), transition (TZs), and meristematic (MZs) zones. In situ mRNA hybridization showed that AtPrx62 transcripts accumulated only in roots treated at pH 4.6 in the same zones where cell death was induced. Furthermore, roots of the atprx62-1 knockout mutant showed decreased cell mortality under low pH compared to wild-type roots. Among the ROS, there was a drastic decrease in O2●− levels in the MZs of wild-type and atprx62-1 roots upon low pH stress. Together, our data demonstrate that AtPrx62 expression is induced by low pH and that the produced protein could positively regulate cell death. Whether the decrease in O2●− level is related to cell death induced upon low pH treatment remains to be elucidated.
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Affiliation(s)
- Jonathas Pereira Graças
- Escola Superior de Agricultura "Luiz de Queiroz", University of São Paulo, 13418-900 São Paulo, Brazil
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, 31320 Auzeville-Tolosane, France
| | - Philippe Ranocha
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, 31320 Auzeville-Tolosane, France
| | | | - Bruno Savelli
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, 31320 Auzeville-Tolosane, France
| | - Elisabeth Jamet
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, 31320 Auzeville-Tolosane, France
| | - Christophe Dunand
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, 31320 Auzeville-Tolosane, France
| | - Vincent Burlat
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, 31320 Auzeville-Tolosane, France
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Aluminum-Specific Upregulation of GmALS3 in the Shoots of Soybeans: A Potential Biomarker for Managing Soybean Production in Acidic Soil Regions. AGRONOMY-BASEL 2020. [DOI: 10.3390/agronomy10091228] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Aluminum (Al) toxicity in acidic soils is a global agricultural problem that limits crop productivity through the inhibition of root growth. However, poor management associated with the application of soil acidity amendments such as lime (CaCO3) in certain crop types can pose a threat to low-input farming practices. Accordingly, it is important to develop appropriate techniques for the management of crop production in acidic soils. In this study, we identified ALS3 (ALUMINUM SENSITIVE 3) in soybeans (Glycine max, cultivar Toyomasari), which is highly expressed in the shoot under Al stress. GmALS3 (Glyma.10G047100) expression was found to be Al-specific under various stress conditions. We analyzed GmALS3 expression in the shoots of soybean plants grown in two different types of acidic soils (artificial and natural acidic soil) with different levels of liming and found that GmALS3 expression was suppressed with levels of liming that have been shown to eliminate soil Al3+ toxicity. Using soybeans as a model, we identified a potential biomarker that could indicate Al toxicity and appropriate liming levels for soybeans cultivated in acidic soils.
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18
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Nakano Y, Kusunoki K, Hoekenga OA, Tanaka K, Iuchi S, Sakata Y, Kobayashi M, Yamamoto YY, Koyama H, Kobayashi Y. Genome-Wide Association Study and Genomic Prediction Elucidate the Distinct Genetic Architecture of Aluminum and Proton Tolerance in Arabidopsis thaliana. FRONTIERS IN PLANT SCIENCE 2020; 11:405. [PMID: 32328080 PMCID: PMC7160251 DOI: 10.3389/fpls.2020.00405] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/16/2019] [Accepted: 03/20/2020] [Indexed: 05/27/2023]
Abstract
Under acid soil conditions, Al stress and proton stress can occur, reducing root growth and function. However, these stressors are distinct, and tolerance to each is governed by multiple physiological processes. To better understand the genes that underlie these coincidental but experimentally separable stresses, a genome-wide association study (GWAS) and genomic prediction (GP) models were created for approximately 200 diverse Arabidopsis thaliana accessions. GWAS and genomic prediction identified 140/160 SNPs associated with Al and proton tolerance, respectively, which explained approximately 70% of the variance observed. Reverse genetics of the genes in loci identified novel Al and proton tolerance genes, including TON1-RECRUITING MOTIF 28 (AtTRM28) and THIOREDOXIN H-TYPE 1 (AtTRX1), as well as genes known to be associated with tolerance, such as the Al-activated malate transporter, AtALMT1. Additionally, variation in Al tolerance was partially explained by expression level polymorphisms of AtALMT1 and AtTRX1 caused by cis-regulatory allelic variation. These results suggest that we successfully identified the loci that regulate Al and proton tolerance. Furthermore, very small numbers of loci were shared by Al and proton tolerance as determined by the GWAS. There were substantial differences between the phenotype predicted by genomic prediction and the observed phenotype for Al tolerance. This suggested that the GWAS-undetectable genetic factors (e.g., rare-allele mutations) contributing to the variation of tolerance were more important for Al tolerance than for proton tolerance. This study provides important new insights into the genetic architecture that produces variation in the tolerance of acid soil.
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Affiliation(s)
- Yuki Nakano
- Faculty of Applied Biological Sciences, Gifu University, Gifu, Japan
| | - Kazutaka Kusunoki
- Faculty of Applied Biological Sciences, Gifu University, Gifu, Japan
| | | | - Keisuke Tanaka
- NODAI Genome Research Center, Tokyo University of Agriculture, Tokyo, Japan
| | - Satoshi Iuchi
- Experimental Plant Division, RIKEN BioResource Research Center, Tsukuba, Japan
| | - Yoichi Sakata
- Department of Bioscience, Tokyo University of Agriculture, Tokyo, Japan
| | - Masatomo Kobayashi
- Experimental Plant Division, RIKEN BioResource Research Center, Tsukuba, Japan
| | | | - Hiroyuki Koyama
- Faculty of Applied Biological Sciences, Gifu University, Gifu, Japan
| | - Yuriko Kobayashi
- Faculty of Applied Biological Sciences, Gifu University, Gifu, Japan
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19
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Differential Aquaporin Response to Distinct Effects of Two Zn Concentrations after Foliar Application in Pak Choi (Brassica rapa L.) Plants. AGRONOMY-BASEL 2020. [DOI: 10.3390/agronomy10030450] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Zinc (Zn) is considered an essential element with beneficial effects on plant cells; however, as a heavy metal, it may induce adverse effects on plants if its concentration exceeds a threshold. In this work, the effects of short-term and prolonged application of low (25 µM) and high (500 µM) Zn concentrations on pak choi (Brassica rapa L.) plants were evaluated. For this, two experiments were conducted. In the first, the effects of short-term (15 h) and partial foliar application were evaluated, and in the second a long-term (15 day) foliar application was applied. The results indicate that at short-term, Zn may induce a rapid hydraulic signal from the sprayed leaves to the roots, leading to changes in root hydraulic conductance but without effects on the whole-leaf gas exchange parameters. Root accumulation of Zn may prevent leaf damage. The role of different root and leaf aquaporin isoforms in the mediation of this signal is discussed, since significant variations in PIP1 and PIP2 gene expression were observed. In the second experiment, low Zn concentration had a beneficial effect on plant growth and specific aquaporin isoforms were differentially regulated at the transcriptional level in the roots. By contrast, the high Zn concentration had a detrimental effect on growth, with reductions in the root hydraulic conductance, leaf photosynthesis rate and Ca2+ uptake in the roots. The abundance of the PIP1 isoforms was significantly increased during this response. Therefore, a 25 µM Zn dose resulted in a positive effect in pak choi growth through an increased root hydraulic conductance.
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20
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Ojeda-Rivera JO, Oropeza-Aburto A, Herrera-Estrella L. Dissection of Root Transcriptional Responses to Low pH, Aluminum Toxicity and Iron Excess Under Pi-Limiting Conditions in Arabidopsis Wild-Type and stop1 Seedlings. FRONTIERS IN PLANT SCIENCE 2020; 11:01200. [PMID: 33133111 PMCID: PMC7550639 DOI: 10.3389/fpls.2020.01200] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/18/2020] [Accepted: 07/23/2020] [Indexed: 05/10/2023]
Abstract
Acidic soils constrain plant growth and development in natural and agricultural ecosystems because of the combination of multiple stress factors including high levels of Fe3+, toxic levels of Al3+, low phosphate (Pi) availability and proton rhizotoxicity. The transcription factor SENSITIVE TO PROTON RHIZOTOXICITY (STOP1) has been reported to underlie root adaptation to low pH, Al3+ toxicity and low Pi availability by activating the expression of genes involved in organic acid exudation, regulation of pH homeostasis, Al3+ detoxification and root architecture remodeling in Arabidopsis thaliana. However, the mechanisms by which STOP1 integrates these environmental signals to trigger adaptive responses to variable conditions in acidic soils remain to be unraveled. It is unknown whether STOP1 activates the expression of a single set of genes that enables root adaptation to acidic soils or multiple gene sets depending on the combination of different types of stress present in acidic soils. Previous transcriptomic studies of stop1 mutants and wild-type plants analyzed the effect of individual types of stress prevalent in acidic soils. An integrative study of the transcriptional regulation pathways that are activated by STOP1 under the combination of major stresses common in acidic soils is lacking. Using RNA-seq, we performed a transcriptional dissection of wild-type and stop1 root responses, individually or in combination, to toxic levels of Al3+, low Pi availability, low pH and Fe excess. We show that the level of STOP1 is post-transcriptionally and coordinately upregulated in the roots of seedlings exposed to single or combined stress factors. The accumulation of STOP1 correlates with the transcriptional activation of stress-specific and common gene sets that are activated in the roots of wild-type seedlings but not in stop1. Our data indicate that perception of low Pi availability, low pH, Fe excess and Al toxicity converges at two levels via STOP1 signaling: post-translationally through the regulation of STOP1 turnover, and transcriptionally, via the activation of STOP1-dependent gene expression that enables the root to better adapt to abiotic stress factors present in acidic soils.
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Affiliation(s)
- Jonathan Odilón Ojeda-Rivera
- Laboratorio Nacional de Genómica para la Biodiversidad (UGA) del Centro de Investigación y de Estudios Avanzados del IPN, Irapuato, México
| | - Araceli Oropeza-Aburto
- Laboratorio Nacional de Genómica para la Biodiversidad (UGA) del Centro de Investigación y de Estudios Avanzados del IPN, Irapuato, México
| | - Luis Herrera-Estrella
- Laboratorio Nacional de Genómica para la Biodiversidad (UGA) del Centro de Investigación y de Estudios Avanzados del IPN, Irapuato, México
- Plant and Soil Science Department, Institute of Genomics for Crop Abiotic Stress Tolerance, Texas Tech University, Lubbock, TX, United States
- *Correspondence: Luis Herrera-Estrella, ;
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21
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Cardoso TB, Pinto RT, Paiva LV. Analysis of gene co-expression networks of phosphate starvation and aluminium toxicity responses in Populus spp. PLoS One 2019; 14:e0223217. [PMID: 31600239 PMCID: PMC6786596 DOI: 10.1371/journal.pone.0223217] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/16/2019] [Accepted: 09/16/2019] [Indexed: 11/23/2022] Open
Abstract
The adaptation of crops to acid soils is needed for the maintenance of food security in a sustainable way, as decreasing fertilizers use and mechanical interventions in the soil would favor the reduction of agricultural practices' environmental impact. Phosphate deficiency and the presence of reactive aluminum affect vital processes to the plant in this soil, mostly water and nutrient absorption. From this, the understanding of the molecular response to these stresses can foster strategies for genetic improvement, so the aim was to broadly analyze the transcriptional variations in Poupulus spp. in response to these abiotic stresses, as a plant model for woody crops. A co-expression network was constructed among 3,180 genes differentially expressed in aluminum-stressed plants with 34,988 connections. Of this total, 344 genes presented two-fold transcriptional variation and the group of genes associated with those regulated after 246 hours of stress had higher number of connections per gene, with some already characterized genes related to this stress as main hubs. Another co-expression network was made up of 8,380 connections between 550 genes regulated by aluminum stress and phosphate deficiency, in which 380 genes had similar profile in both stresses and only eight with transcriptional variation higher than 20%. All the transcriptomic data are presented here with functional enrichment and homology comparisons with already characterized genes in another species that are related to the explored stresses, in order to provide a broad analysis of the co-opted responses for both the stresses as well as some specificity. This approach improves our understanding regarding the plants adaptation to acid soils and may contribute to strategies of crop genetic improvement for this condition that is widely present in regions of high agricultural activity.
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Affiliation(s)
- Thiago Bergamo Cardoso
- Central Laboratory of Molecular Biology, Department of Chemistry, Federal University of Lavras, Lavras, Brazil
| | - Renan Terassi Pinto
- Central Laboratory of Molecular Biology, Department of Chemistry, Federal University of Lavras, Lavras, Brazil
| | - Luciano Vilela Paiva
- Central Laboratory of Molecular Biology, Department of Chemistry, Federal University of Lavras, Lavras, Brazil
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22
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Sadhukhan A, Enomoto T, Kobayashi Y, Watanabe T, Iuchi S, Kobayashi M, Sahoo L, Yamamoto YY, Koyama H. Sensitive to Proton Rhizotoxicity1 Regulates Salt and Drought Tolerance of Arabidopsis thaliana through Transcriptional Regulation of CIPK23. PLANT & CELL PHYSIOLOGY 2019; 60:2113-2126. [PMID: 31241160 DOI: 10.1093/pcp/pcz120] [Citation(s) in RCA: 25] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/26/2019] [Accepted: 06/11/2019] [Indexed: 05/10/2023]
Abstract
The transcription factor sensitive to proton rhizotoxicity 1 (STOP1) regulates multiple stress tolerances. In this study, we confirmed its involvement in NaCl and drought tolerance. The root growth of the T-DNA insertion mutant of STOP1 (stop1) was sensitive to NaCl-containing solidified MS media. Transcriptome analysis of stop1 under NaCl stress revealed that STOP1 regulates several genes related to salt tolerance, including CIPK23. Among all available homozygous T-DNA insertion mutants of the genes suppressed in stop1, only cipk23 showed a NaCl-sensitive root growth phenotype comparable to stop1. The CIPK23 promoter had a functional STOP1-binding site, suggesting a strong CIPK23 suppression led to NaCl sensitivity of stop1. This possibility was supported by in planta complementation of CIPK23 in the stop1 background, which rescued the short root phenotype under NaCl. Both stop1 and cipk23 exhibited a drought tolerant phenotype and increased abscisic acid-regulated stomatal closure, while the complementation of CIPK23 in stop1 reversed these traits. Our findings uncover additional pleiotropic roles of STOP1 mediated by CIPK23, which regulates various ion transporters including those regulating K+-homeostasis, which may induce a trade-off between drought tolerance and other traits.
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Affiliation(s)
- Ayan Sadhukhan
- Faculty of Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu, Japan
| | - Takuo Enomoto
- Faculty of Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu, Japan
| | - Yuriko Kobayashi
- Faculty of Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu, Japan
| | - Toshihiro Watanabe
- Research Faculty of Agriculture, Hokkaido University, Kita-9, Nishi-9, Kitaku, Sapporo, Japan
| | - Satoshi Iuchi
- Experimental Plant Division, RIKEN BioResource Research Center, Tsukuba, Ibaraki, Japan
| | - Masatomo Kobayashi
- Experimental Plant Division, RIKEN BioResource Research Center, Tsukuba, Ibaraki, Japan
| | - Lingaraj Sahoo
- Department of Biosciences and bioengineering, Indian Institute of Technology Guwahati, Guwahati, India
| | - Yoshiharu Y Yamamoto
- Faculty of Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu, Japan
| | - Hiroyuki Koyama
- Faculty of Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu, Japan
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23
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Murakawa M, Ohta H, Shimojima M. Lipid remodeling under acidic conditions and its interplay with low Pi stress in Arabidopsis. PLANT MOLECULAR BIOLOGY 2019; 101:81-93. [PMID: 31201686 PMCID: PMC6695348 DOI: 10.1007/s11103-019-00891-1] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.2] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/12/2019] [Accepted: 06/06/2019] [Indexed: 06/09/2023]
Abstract
Here we show that accumulation of galactose-containing lipids in plastid membranes in shoots and the other membranes in roots maintains Arabidopsis growth under acidic stress and acidic phosphate deficiency. Soil acidification and phosphate deficiency are closely related to each other in natural environments. In addition to the toxicity of high proton concentrations, acid soil can lead to imbalances of ion availability and nutritional deficiencies, including inorganic phosphate (Pi). Among plants, activation of non-phosphorus-containing galactolipid, digalactosyldiacylglycerol (DGDG), synthesis concomitant with phospholipid degradation, namely membrane lipid remodeling, is crucial for coping with Pi starvation. However, regulation mechanisms of membrane lipid composition during acidic stress have not been clarified. Here, we investigated lipid metabolism in Arabidopsis thaliana grown under acidic stress with or without Pi. Under Pi-sufficient acidic conditions, DGDG was increased in shoot membranes, and some Pi starvation-responsive genes that are involved in lipid remodeling were upregulated without reducing Pi content in leaves. In contrast, under acidic Pi deficiency, membrane lipid remodeling in roots was partially repressed at a lower external pH. Nevertheless, phenotypic comparison between wild type and the double mutant of MGD2/3, which are responsible for DGDG accumulation during Pi starvation, indicated that the complete absence of lipid remodeling in roots resulted in a loss of tolerance to Pi deficiency rather specifically under acidic conditions. This result suggested important physiological roles of galactolipid-enriched membranes under acidic Pi deficiency.
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Affiliation(s)
- Masato Murakawa
- School of Life Science and Technology, Tokyo Institute of Technology, 4259-B-65 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa, 226-8501, Japan
| | - Hiroyuki Ohta
- School of Life Science and Technology, Tokyo Institute of Technology, 4259-B-65 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa, 226-8501, Japan
| | - Mie Shimojima
- School of Life Science and Technology, Tokyo Institute of Technology, 4259-B-65 Nagatsuta-cho, Midori-ku, Yokohama, Kanagawa, 226-8501, Japan.
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24
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Godon C, Mercier C, Wang X, David P, Richaud P, Nussaume L, Liu D, Desnos T. Under phosphate starvation conditions, Fe and Al trigger accumulation of the transcription factor STOP1 in the nucleus of Arabidopsis root cells. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2019; 99:937-949. [PMID: 31034704 PMCID: PMC6852189 DOI: 10.1111/tpj.14374] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/24/2018] [Revised: 04/07/2019] [Accepted: 04/24/2019] [Indexed: 05/20/2023]
Abstract
Low-phosphate (Pi) conditions are known to repress primary root growth of Arabidopsis at low pH and in an Fe-dependent manner. This growth arrest requires accumulation of the transcription factor STOP1 in the nucleus, where it activates the transcription of the malate transporter gene ALMT1; exuded malate is suspected to interact with extracellular Fe to inhibit root growth. In addition, ALS3 - an ABC-like transporter identified for its role in tolerance to toxic Al - represses nuclear accumulation of STOP1 and the expression of ALMT1. Until now it was unclear whether Pi deficiency itself or Fe activates the accumulation of STOP1 in the nucleus. Here, by using different growth media to dissociate the effects of Fe from Pi deficiency itself, we demonstrate that Fe is sufficient to trigger the accumulation of STOP1 in the nucleus, which, in turn, activates the expression of ALMT1. We also show that a low pH is necessary to stimulate the Fe-dependent accumulation of nuclear STOP1. Furthermore, pharmacological experiments indicate that Fe inhibits proteasomal degradation of STOP1. We also show that Al acts like Fe for nuclear accumulation of STOP1 and ALMT1 expression, and that the overaccumulation of STOP1 in the nucleus of the als3 mutant grown in low-Pi conditions could be abolished by Fe deficiency. Altogether, our results indicate that, under low-Pi conditions, Fe2/3+ and Al3+ act similarly to increase the stability of STOP1 and its accumulation in the nucleus where it activates the expression of ALMT1.
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Affiliation(s)
- Christian Godon
- Laboratoire de Biologie du Développement des Plantes, Commissariat à l'Énergie Atomique et aux Énergies AlternativesUMR7265 (CEA, Aix‐Marseille Université, CNRS)Saint Paul‐Lez‐DuranceF‐13108France
| | - Caroline Mercier
- Laboratoire de Biologie du Développement des Plantes, Commissariat à l'Énergie Atomique et aux Énergies AlternativesUMR7265 (CEA, Aix‐Marseille Université, CNRS)Saint Paul‐Lez‐DuranceF‐13108France
| | - Xiaoyue Wang
- Ministry of Education Key Laboratory of BioinformaticsCenter for Plant BiologySchool of Life SciencesTsinghua UniversityBeijing100084China
| | - Pascale David
- Laboratoire de Biologie du Développement des Plantes, Commissariat à l'Énergie Atomique et aux Énergies AlternativesUMR7265 (CEA, Aix‐Marseille Université, CNRS)Saint Paul‐Lez‐DuranceF‐13108France
| | - Pierre Richaud
- Laboratoire de Bioénergétique et Biotechnologie des Bactéries et MicroalguesCommissariat à l'Énergie Atomique et aux Énergies AlternativesUMR7265 (CEA, Aix‐Marseille Université, CNRS)Saint Paul‐Lez‐DuranceF‐13108France
| | - Laurent Nussaume
- Laboratoire de Biologie du Développement des Plantes, Commissariat à l'Énergie Atomique et aux Énergies AlternativesUMR7265 (CEA, Aix‐Marseille Université, CNRS)Saint Paul‐Lez‐DuranceF‐13108France
| | - Dong Liu
- Ministry of Education Key Laboratory of BioinformaticsCenter for Plant BiologySchool of Life SciencesTsinghua UniversityBeijing100084China
| | - Thierry Desnos
- Laboratoire de Biologie du Développement des Plantes, Commissariat à l'Énergie Atomique et aux Énergies AlternativesUMR7265 (CEA, Aix‐Marseille Université, CNRS)Saint Paul‐Lez‐DuranceF‐13108France
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Kumar V, Kumar P, Kumar S, Singhal D, Gupta R. Turn-On Fluorescent Sensors for the Selective Detection of Al 3+ (and Ga 3+) and PPi Ions. Inorg Chem 2019; 58:10364-10376. [PMID: 31342750 DOI: 10.1021/acs.inorgchem.9b01550] [Citation(s) in RCA: 59] [Impact Index Per Article: 11.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
Abstract
Rationally designed multiple hydroxyl-group-based chemosensors L1-L4 containing arene-based fluorophores are presented for the selective detection of Al3+ and Ga3+ ions. Changes in the absorption and emission spectra of L1-L4 in ethanol were easily observable upon the addition of Al3+ and Ga3+ ions. Competitive binding studies, detection limits, and binding constants illustrate significant sensing abilities of these chemosensors with L4, showing the best results. The interaction of Al3+/Ga3+ ions with chemosensor L4 was investigated by fluorescence lifetime measurements, whereas Job's plot, high-resolution mass spectrometry, and 1H NMR spectral titrations substantiated the stoichiometry between L4 and Al3+/Ga3+ ions. The solution-generated [L-M3+] species further detected pyrophosphate ion (PPi) by exhibiting emission enhancement and a visible color change. The binding of Al3+/Ga3+ ions with chemosensor L4 was further supported by density functional theory studies. Reversibility for the detection of Al3+/Ga3+ ions was achieved by utilizing a suitable proton source. The multiionic response, reversibility, and optical visualization of the present chemosensors make them ideal for practical applications for real samples, which have been illustrated by paper-strip as well as polystyrene film-based detection.
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Affiliation(s)
- Vijay Kumar
- Department of Chemistry , University of Delhi , New Delhi 110007 , India
| | - Pramod Kumar
- Department of Chemistry , University of Delhi , New Delhi 110007 , India
| | - Sushil Kumar
- Department of Chemistry , University of Delhi , New Delhi 110007 , India
| | - Divya Singhal
- Department of Chemistry , University of Delhi , New Delhi 110007 , India
| | - Rajeev Gupta
- Department of Chemistry , University of Delhi , New Delhi 110007 , India
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Enomoto T, Tokizawa M, Ito H, Iuchi S, Kobayashi M, Yamamoto YY, Kobayashi Y, Koyama H. STOP1 regulates the expression of HsfA2 and GDHs that are critical for low-oxygen tolerance in Arabidopsis. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:3297-3311. [PMID: 30882866 DOI: 10.1093/jxb/erz124] [Citation(s) in RCA: 23] [Impact Index Per Article: 4.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/29/2018] [Accepted: 03/07/2019] [Indexed: 05/03/2023]
Abstract
The SENSITIVE TO PROTON RHIZOTOXICITY 1 (STOP1) transcription factor regulates gene expression associated with multiple stress tolerances in plant roots. In this study, we investigated the mechanism responsible for the sensitivity of the stop1 mutant to low-oxygen stress in Arabidopsis. Transcriptomic analyses revealed that two genes involved in low-oxygen tolerance, namely GLUTAMATE DEHYDROGENASE 1 (GDH1) and GDH2, showed lower expression levels in the stop1 mutant than in the wild-type. Sensitivity of the gdh1gdh2 double-mutant to low-oxygen conditions was partly attributable to the low-oxygen sensitivity of the stop1 mutant. Two transcription factors, STOP2 and HEAT SHOCK FACTOR A2 (HsfA2), were expressed at lower levels in the stop1 mutant. An in planta complementation assay indicated that CaMV35S::STOP2 or CaMV35S::HsfA2 partially rescued the low-oxygen tolerance of the stop1 mutant, which was concomitant with recovered expression of genes regulating low-pH tolerance and genes encoding molecular chaperones. Prediction of cis-elements and in planta promoter assays revealed that STOP1 directly activated the expression of HsfA2. Similar STOP1-dependent low-oxygen sensitivity was detected in tobacco. Suppression of NtSTOP1 induced low-oxygen sensitivity, which was associated with lower expression levels of NtHsfA2 and NtGDHs compared with the wild-type. Our results indicated that STOP1 pleiotropically regulates low-oxygen tolerance by transcriptional regulation.
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Affiliation(s)
- Takuo Enomoto
- Applied Biological Sciences, Gifu University, Gifu, Japan
| | | | - Hiroki Ito
- Applied Biological Sciences, Gifu University, Gifu, Japan
| | | | | | - Yoshiharu Y Yamamoto
- Applied Biological Sciences, Gifu University, Gifu, Japan
- RIKEN CSRS, Kanagawa, Japan
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27
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Wu L, Sadhukhan A, Kobayashi Y, Ogo N, Tokizawa M, Agrahari RK, Ito H, Iuchi S, Kobayashi M, Asai A, Koyama H. Involvement of phosphatidylinositol metabolism in aluminum-induced malate secretion in Arabidopsis. JOURNAL OF EXPERIMENTAL BOTANY 2019; 70:3329-3342. [PMID: 30977815 DOI: 10.1093/jxb/erz179] [Citation(s) in RCA: 20] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/06/2018] [Accepted: 04/03/2019] [Indexed: 05/27/2023]
Abstract
To identify the upstream signaling of aluminum-induced malate secretion through aluminum-activated malate transporter 1 (AtALMT1), a pharmacological assay using inhibitors of human signal transduction pathways was performed. Early aluminum-induced transcription of AtALMT1 and other aluminum-responsive genes was significantly suppressed by phosphatidylinositol 4-kinase (PI4K) and phospholipase C (PLC) inhibitors, indicating that the PI4K-PLC metabolic pathway activates early aluminum signaling. Inhibitors of phosphatidylinositol 3-kinase (PI3K) and PI4K reduced aluminum-activated malate transport by AtALMT1, suggesting that both the PI3K and PI4K metabolic pathways regulate this process. These results were validated using T-DNA insertion mutants of PI4K and PI3K-RNAi lines. A human protein kinase inhibitor, putatively inhibiting homologous calcineurin B-like protein-interacting protein kinase and/or Ca-dependent protein kinase in Arabidopsis, suppressed late-phase aluminum-induced expression of AtALMT1, which was concomitant with the induction of an AtALMT1 repressor, WRKY46, and suppression of an AtALMT1 activator, Calmodulin-binding transcription activator 2 (CAMTA2). In addition, a human deubiquitinase inhibitor suppressed aluminum-activated malate transport, suggesting that deubiquitinases can regulate this process. We also found a reduction of aluminum-induced citrate secretion in tobacco by applying inhibitors of PI3K and PI4K. Taken together, our results indicated that phosphatidylinositol metabolism regulates organic acid secretion in plants under aluminum stress.
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Affiliation(s)
- Liujie Wu
- Applied Biological Sciences, Gifu University, Gifu, Japan
| | - Ayan Sadhukhan
- Applied Biological Sciences, Gifu University, Gifu, Japan
| | | | - Naohisa Ogo
- Graduate Division of Pharmaceutical Sciences, University of Shizuoka, Shizuoka, Japan
| | | | | | - Hiroki Ito
- Applied Biological Sciences, Gifu University, Gifu, Japan
| | - Satoshi Iuchi
- Experimental Plant Division, RIKEN BioResource Research Center, Tsukuba, Ibaraki, Japan
| | - Masatomo Kobayashi
- Experimental Plant Division, RIKEN BioResource Research Center, Tsukuba, Ibaraki, Japan
| | - Akira Asai
- Graduate Division of Pharmaceutical Sciences, University of Shizuoka, Shizuoka, Japan
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28
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Hu H, He J, Zhao J, Ou X, Li H, Ru Z. Low pH stress responsive transcriptome of seedling roots in wheat (Triticum aestivum L.). Genes Genomics 2018; 40:1199-1211. [PMID: 30315523 DOI: 10.1007/s13258-018-0680-6] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2017] [Accepted: 02/28/2018] [Indexed: 12/22/2022]
Abstract
Soil acidification is one of major problems limiting crop growth and especially becoming increasingly serious in China owing to excessive use of nitrogen fertilizer. Only the STOP1 of Arabidopsis was identified clearly sensitive to proton rhizotoxicity and the molecular mechanism for proton toxicity tolerance of plants is still poorly understood. The main objective of this study was to investigate the transcriptomic change in plants under the low pH stress. The low pH as a single factor was employed to induce the response of the wheat seedling roots. Wheat cDNA microarray was used to identify differentially expressed genes (DEGs). A total of 1057 DEGs were identified, of which 761 genes were up-regulated and 296 were down-regulated. The greater percentage of up-regulated genes involved in developmental processes, immune system processes, multi-organism processes, positive regulation of biological processes and metabolic processes of the biological processes. The more proportion of down-regulation genes belong to the molecular function category including transporter activity, antioxidant activity and molecular transducer activity and to the extracellular region of the cellular components category. Moreover, most genes among 41 genes involved in ion binding, 17 WAKY transcription factor genes and 17 genes related to transport activity were up-regulated. KEGG analysis showed that the jasmonate signal transduction and flavonoid biosynthesis might play important roles in response to the low pH stress in wheat seedling roots. Based on the data, it is can be deduced that WRKY transcription factors might play a critical role in the transcriptional regulation, and the alkalifying of the rhizosphere might be the earliest response process to low pH stress in wheat seedling roots. These results provide a basis to reveal the molecular mechanism of proton toxicity tolerance in plants.
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Affiliation(s)
- Haiyan Hu
- School of Life Science and Technology, Henan Institute of Science and Technology, Xinxiang, 453003, Henan, China.
- Collaborative Innovation Center of Modern Biological Breeding, Xinxiang, 453003, Henan, China.
- Henan Engineering Research Center of Crop Genome Editing, Xinxiang, 453003, Henan, China.
| | - Jie He
- School of Life Science and Technology, Henan Institute of Science and Technology, Xinxiang, 453003, Henan, China
| | - Junjie Zhao
- School of Life Science and Technology, Henan Institute of Science and Technology, Xinxiang, 453003, Henan, China
| | - Xingqi Ou
- School of Life Science and Technology, Henan Institute of Science and Technology, Xinxiang, 453003, Henan, China
- Collaborative Innovation Center of Modern Biological Breeding, Xinxiang, 453003, Henan, China
| | - Hongmin Li
- School of Life Science and Technology, Henan Institute of Science and Technology, Xinxiang, 453003, Henan, China
- Henan Engineering Research Center of Crop Genome Editing, Xinxiang, 453003, Henan, China
| | - Zhengang Ru
- School of Life Science and Technology, Henan Institute of Science and Technology, Xinxiang, 453003, Henan, China.
- Collaborative Innovation Center of Modern Biological Breeding, Xinxiang, 453003, Henan, China.
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Wagatsuma T, Maejima E, Watanabe T, Toyomasu T, Kuroda M, Muranaka T, Ohyama K, Ishikawa A, Usui M, Hossain Khan S, Maruyama H, Tawaraya K, Kobayashi Y, Koyama H. Dark conditions enhance aluminum tolerance in several rice cultivars via multiple modulations of membrane sterols. JOURNAL OF EXPERIMENTAL BOTANY 2018; 69:567-577. [PMID: 29294038 PMCID: PMC5853495 DOI: 10.1093/jxb/erx414] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/19/2017] [Accepted: 10/30/2017] [Indexed: 05/22/2023]
Abstract
Aluminum-sensitive rice (Oryza sativa L.) cultivars showed increased Al tolerance under dark conditions, because less Al accumulated in the root tips (1 cm) under dark than under light conditions. Under dark conditions, the root tip concentration of total sterols, which generally reduce plasma membrane permeabilization, was higher in the most Al-sensitive japonica cultivar, Koshihikari (Ko), than in the most Al-tolerant cultivar, Rikuu-132 (R132), but the phospholipid content did not differ between the two. The Al treatment increased the proportion of stigmasterol (which has no ability to reduce membrane permeabilization) out of total sterols similarly in both cultivars under light conditions, but it decreased more in Ko under dark conditions. The carotenoid content in the root tip of Al-treated Ko was significantly lower under dark than under light conditions, indicating that isopentenyl diphosphate transport from the cytosol to plastids was decreased under dark conditions. HMG2 and HMG3 (encoding the key sterol biosynthetic enzyme 3-hydroxy-3-methylglutaryl CoA reductase) transcript levels in the root tips were enhanced under dark conditions. We suggest that the following mechanisms contribute to the increase in Al tolerance under dark conditions: inhibition of stigmasterol formation to retain membrane integrity; greater partitioning of isopentenyl diphosphate for sterol biosynthesis; and enhanced expression of HMGs to increase sterol biosynthesis.
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Affiliation(s)
- Tadao Wagatsuma
- Faculty of Agriculture, Yamagata University, Tsuruoka, Japan
- Correspondence:
| | - Eriko Maejima
- Graduate School of Agriculture, Hokkaido University, Sapporo, Japan
| | | | | | | | - Toshiya Muranaka
- Plant Science Center, RIKEN, Yokohama, Japan
- Department of Biotechnology, Graduate School of Engineering, Osaka University, Suita, Osaka, Japan
| | | | | | - Masami Usui
- Faculty of Agriculture, Yamagata University, Tsuruoka, Japan
| | | | - Hayato Maruyama
- Graduate School of Agriculture, Hokkaido University, Sapporo, Japan
| | | | - Yuriko Kobayashi
- Faculty of Applied Biological Sciences, Gifu University, Gifu, Japan
| | - Hiroyuki Koyama
- Faculty of Applied Biological Sciences, Gifu University, Gifu, Japan
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30
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Xalxo R, Sahu K. Acid rain-induced oxidative stress regulated metabolic interventions and their amelioration mechanisms in plants. Biologia (Bratisl) 2017. [DOI: 10.1515/biolog-2017-0171] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/07/2023]
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31
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Kichigina NE, Puhalsky JV, Shaposhnikov AI, Azarova TS, Makarova NM, Loskutov SI, Safronova VI, Tikhonovich IA, Vishnyakova MA, Semenova EV, Kosareva IA, Belimov AA. Aluminum exclusion from root zone and maintenance of nutrient uptake are principal mechanisms of Al tolerance in Pisum sativum L. PHYSIOLOGY AND MOLECULAR BIOLOGY OF PLANTS : AN INTERNATIONAL JOURNAL OF FUNCTIONAL PLANT BIOLOGY 2017; 23:851-863. [PMID: 29158634 PMCID: PMC5671451 DOI: 10.1007/s12298-017-0469-0] [Citation(s) in RCA: 17] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/28/2017] [Revised: 06/21/2017] [Accepted: 09/11/2017] [Indexed: 05/29/2023]
Abstract
Our study aimed to evaluate intraspecific variability of pea (Pisum sativum L.) in Al tolerance and to reveal mechanisms underlying genotypic differences in this trait. At the first stage, 106 pea genotypes were screened for Al tolerance using root re-elongation assay based on staining with eriochrome cyanine R. The root re-elongation zone varied from 0.5 mm to 14 mm and relationships between Al tolerance and provenance or phenotypic traits of genotypes were found. Tolerance index (TI), calculated as a biomass ratio of Al-treated and non-treated contrasting genotypes grown in hydroponics for 10 days, varied from 30% to 92% for roots and from 38% to 90% for shoots. TI did not correlate with root or shoot Al content, but correlated positively with increasing pH and negatively with residual Al concentration in nutrient solution in the end of experiments. Root exudation of organic acid anions (mostly acetate, citrate, lactate, pyroglutamate, pyruvate and succinate) significantly increased in several Al-treated genotypes, but did not correlate with TI. Al-treatment decreased Ca, Co, Cu, K, Mg, Mn, Mo, Ni, S and Zn contents in roots and/or shoots, whereas contents of several elements (P, B, Fe and Mo in roots and B and Fe in shoots) increased, suggesting that Al toxicity induced substantial disturbances in uptake and translocation of nutrients. Nutritional disturbances were more pronounced in Al sensitive genotypes. In conclusion, pea has a high intraspecific variability in Al tolerance and this trait is associated with provenance and phenotypic properties of plants. Transformation of Al to unavailable (insoluble) forms in the root zone and the ability to maintain nutrient uptake are considered to be important mechanisms of Al tolerance in this plant species.
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Affiliation(s)
- Natalia E. Kichigina
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
| | - Jan V. Puhalsky
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
| | - Aleksander I. Shaposhnikov
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
| | - Tatiana S. Azarova
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
| | - Natalia M. Makarova
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
| | - Svyatoslav I. Loskutov
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
| | - Vera I. Safronova
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
| | - Igor A. Tikhonovich
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
- Saint-Petersburg State University, University Embankment, Saint-Petersburg, Russian Federation 199034
| | - Margarita A. Vishnyakova
- N.I. Vavilov Institute of Plant Genetic Resources, B. Morskaya Str. 42-44, Saint-Petersburg, Russian Federation 190000
| | - Elena V. Semenova
- N.I. Vavilov Institute of Plant Genetic Resources, B. Morskaya Str. 42-44, Saint-Petersburg, Russian Federation 190000
| | - Irina A. Kosareva
- N.I. Vavilov Institute of Plant Genetic Resources, B. Morskaya Str. 42-44, Saint-Petersburg, Russian Federation 190000
| | - Andrey A. Belimov
- All-Russia Research Institute for Agricultural Microbiology, Podbelskogo sh. 3, Pushkin, Saint-Petersburg, Russian Federation 196608
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32
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Wang N, Feng Z, Zhou Y, Zhu H, Yao Q. External hyphae of Rhizophagus irregularis DAOM 197198 are less sensitive to low pH than roots in arbuscular mycorrhizae: evidence from axenic culture system. ENVIRONMENTAL MICROBIOLOGY REPORTS 2017; 9:649-657. [PMID: 28799726 DOI: 10.1111/1758-2229.12573] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/05/2017] [Revised: 07/31/2017] [Accepted: 08/02/2017] [Indexed: 05/10/2023]
Abstract
The growth of plant roots and arbuscular mycorrhizal fungi (AMF) can be inhibited by low pH; however, it is largely unknown which is more sensitive to low pH. This study aimed to compare the physiological and molecular responses of external hyphae (EH) and roots to low pH in terms of growth, development and functioning. We established AM symbiosis in a two-compartmented system (root compartment, RC; hyphal compartment, HC) using AMF and transformed hairy roots and exposed them to pH 6.5 and/or pH 4.5. The results showed that pH 4.5 significantly decreased root cell viability, while EH at pH 6.5 attenuated the effect. In either RC or HC, pH 4.5 reduced biomass, P content, colonization, ALP activity in roots, and ALP activity and polyphosphate accumulation in EH. GintPT expression in EH was inhibited by pH 4.5 in HC but not in RC. The expression of mycorrhiza-responsive LePTs was significantly reduced by the lower colonization due to decreased pH in either RC or HC, while the expression of non-mycorrhiza-responsive LePTs was not affected. Variation partitioning analysis indicated that EH was less sensitive to low pH than roots. The interactions between roots and EH under low pH stress merit further investigation.
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Affiliation(s)
- Ning Wang
- College of Horticulture, South China Agricultural University, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Guangdong Engineering Research Center for Litchi, Guangdong Engineering Research Center for Grass Science, Guangzhou 510642, China
- Department of Municipal Engineering, Guangdong Polytechnic of Water Resources and Electric Engineering, Guangzhou 510635, China
| | - Zengwei Feng
- College of Horticulture, South China Agricultural University, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Guangdong Engineering Research Center for Litchi, Guangdong Engineering Research Center for Grass Science, Guangzhou 510642, China
| | - Yang Zhou
- College of Horticulture, South China Agricultural University, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Guangdong Engineering Research Center for Litchi, Guangdong Engineering Research Center for Grass Science, Guangzhou 510642, China
| | - Honghui Zhu
- Guangdong Institute of Microbiology, State Key Laboratory of Applied Microbiology Southern China, Guangdong Provincial Key Laboratory of Microbial Culture Collection and Application, Guangzhou 510070, China
| | - Qing Yao
- College of Horticulture, South China Agricultural University, Guangdong Province Key Laboratory of Microbial Signals and Disease Control, Guangdong Engineering Research Center for Litchi, Guangdong Engineering Research Center for Grass Science, Guangzhou 510642, China
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33
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Pelagio-Flores R, Esparza-Reynoso S, Garnica-Vergara A, López-Bucio J, Herrera-Estrella A. Trichoderma-Induced Acidification Is an Early Trigger for Changes in Arabidopsis Root Growth and Determines Fungal Phytostimulation. FRONTIERS IN PLANT SCIENCE 2017; 8:822. [PMID: 28567051 PMCID: PMC5434454 DOI: 10.3389/fpls.2017.00822] [Citation(s) in RCA: 14] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/29/2017] [Accepted: 05/02/2017] [Indexed: 05/03/2023]
Abstract
Trichoderma spp. are common rhizosphere inhabitants widely used as biological control agents and their role as plant growth promoting fungi has been established. Although soil pH influences several fungal and plant functional traits such as growth and nutrition, little is known about its influence in rhizospheric or mutualistic interactions. The role of pH in the Trichoderma-Arabidopsis interaction was studied by determining primary root growth and lateral root formation, root meristem status and cell viability, quiescent center (QC) integrity, and auxin inducible gene expression. Primary root growth phenotypes in wild type seedlings and STOP1 mutants allowed identification of a putative root pH sensing pathway likely operating in plant-fungus recognition. Acidification by Trichoderma induced auxin redistribution within Arabidopsis columella root cap cells, causing root tip bending and growth inhibition. Root growth stoppage correlated with decreased cell division and with the loss of QC integrity and cell viability, which were reversed by buffering the medium. In addition, stop1, an Arabidopsis mutant sensitive to low pH, was oversensitive to T. atroviride primary root growth repression, providing genetic evidence that a pH root sensing mechanism reprograms root architecture during the interaction. Our results indicate that root sensing of pH mediates the interaction of Trichoderma with plants.
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Affiliation(s)
- Ramón Pelagio-Flores
- Laboratorio Nacional de Genómica para la Biodiversidad-Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del IPNIrapuato, México
| | - Saraí Esparza-Reynoso
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de HidalgoMorelia, México
| | - Amira Garnica-Vergara
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de HidalgoMorelia, México
| | - José López-Bucio
- Instituto de Investigaciones Químico-Biológicas, Universidad Michoacana de San Nicolás de HidalgoMorelia, México
| | - Alfredo Herrera-Estrella
- Laboratorio Nacional de Genómica para la Biodiversidad-Unidad de Genómica Avanzada, Centro de Investigación y de Estudios Avanzados del IPNIrapuato, México
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34
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Graças JP, Ruiz-Romero R, Figueiredo LD, Mattiello L, Peres LEP, Vitorello VA. Root growth restraint can be an acclimatory response to low pH and is associated with reduced cell mortality: a possible role of class III peroxidases and NADPH oxidases. PLANT BIOLOGY (STUTTGART, GERMANY) 2016; 18:658-68. [PMID: 26891589 DOI: 10.1111/plb.12443] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2015] [Accepted: 02/15/2016] [Indexed: 05/15/2023]
Abstract
Low pH (<5.0) can significantly decrease root growth but whether this is a direct effect of H(+) or an active plant response is examined here. Tomato (Solanum lycopersicum cv Micro-Tom) roots were exposed directly or gradually to low pH through step-wise changes in pH over periods ranging from 4 to 24 h. Roots exposed gradually to pH 4.5 grew even less than those exposed directly, indicating a plant-coordinated response. Direct exposure to pH 4.0 suppressed root growth and caused high cell mortality, in contrast to roots exposed gradually, in which growth remained inhibited but cell viability was maintained. Total class III peroxidase activity increased significantly in all low pH treatments, but was not correlated with the observed differential responses. Use of the enzyme inhibitors salicylhydroxamic acid (SHAM) or diphenyleneiodonium chloride (DPI) suggest that peroxidase and, to a lesser extent, NADPH oxidase were required to prevent or reduce injury in all low pH treatments. However, a role for other enzymes, such as the alternative oxidase is also possible. The results with SHAM, but not DPI, were confirmed in tobacco BY-2 cells. Our results indicate that root growth inhibition from low pH can be part of an active plant response, and suggest that peroxidases may have a critical early role in reducing loss of cell viability and in the observed root growth constraint.
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Affiliation(s)
- J P Graças
- Escola Superior de Agricultura 'Luiz de Queiroz', University of São Paulo, Piracicaba, Brazil
| | - R Ruiz-Romero
- Centro de Energia Nuclear na Agricultura, University of São Paulo, Piracicaba, Brazil
| | - L D Figueiredo
- Escola Superior de Agricultura 'Luiz de Queiroz', University of São Paulo, Piracicaba, Brazil
| | - L Mattiello
- Escola Superior de Agricultura 'Luiz de Queiroz', University of São Paulo, Piracicaba, Brazil
| | - L E P Peres
- Escola Superior de Agricultura 'Luiz de Queiroz', University of São Paulo, Piracicaba, Brazil
| | - V A Vitorello
- Centro de Energia Nuclear na Agricultura, University of São Paulo, Piracicaba, Brazil
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35
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Kobayashi Y, Sadhukhan A, Tazib T, Nakano Y, Kusunoki K, Kamara M, Chaffai R, Iuchi S, Sahoo L, Kobayashi M, Hoekenga OA, Koyama H. Joint genetic and network analyses identify loci associated with root growth under NaCl stress in Arabidopsis thaliana. PLANT, CELL & ENVIRONMENT 2016; 39:918-34. [PMID: 26667381 DOI: 10.1111/pce.12691] [Citation(s) in RCA: 29] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/01/2014] [Revised: 12/04/2015] [Accepted: 12/06/2015] [Indexed: 05/19/2023]
Abstract
Plants have evolved a series of tolerance mechanisms to saline stress, which perturbs physiological processes throughout the plant. To identify genetic mechanisms associated with salinity tolerance, we performed linkage analysis and genome-wide association study (GWAS) on maintenance of root growth of Arabidopsis thaliana in hydroponic culture with weak and severe NaCl toxicity. The top 200 single-nucleotide polymorphisms (SNPs) determined by GWAS could cumulatively explain approximately 70% of the variation observed at each stress level. The most significant SNPs were linked to the genes of ATP-binding cassette B10 and vacuolar proton ATPase A2. Several known salinity tolerance genes such as potassium channel KAT1 and calcium sensor SOS3 were also linked to SNPs in the top 200. In parallel, we constructed a gene co-expression network to independently verify that particular groups of genes work together to a common purpose. We identify molecular mechanisms to confer salt tolerance from both predictable and novel physiological sources and validate the utility of combined genetic and network analysis. Additionally, our study indicates that the genetic architecture of salt tolerance is responsive to the severity of stress. These gene datasets are a significant information resource for a following exploration of gene function.
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Affiliation(s)
- Yuriko Kobayashi
- Faculty of Applied Biological Sciences, Gifu University, Gifu, 501-1193, Japan
| | - Ayan Sadhukhan
- Faculty of Applied Biological Sciences, Gifu University, Gifu, 501-1193, Japan
- Department of Biotechnology, Indian Institute of Technology Guwahati, Guwahati, Assam, 781039, India
| | - Tanveer Tazib
- Faculty of Applied Biological Sciences, Gifu University, Gifu, 501-1193, Japan
| | - Yuki Nakano
- Faculty of Applied Biological Sciences, Gifu University, Gifu, 501-1193, Japan
| | - Kazutaka Kusunoki
- Faculty of Applied Biological Sciences, Gifu University, Gifu, 501-1193, Japan
| | - Mohamed Kamara
- Faculty of Applied Biological Sciences, Gifu University, Gifu, 501-1193, Japan
- Agronomy Department, Faculty of Agriculture, Kafrelsheikh University, Kafr el-Sheikh, 33516, Egypt
| | - Radhouane Chaffai
- Faculty of Applied Biological Sciences, Gifu University, Gifu, 501-1193, Japan
- Laboratory of Biotechnology and Bio-Geo Resources Valorization, Higher Institute of Biotechnology, University of Manouba BiotechPole, Sidi Thabet, Ariana, 2020, Tunisia
| | - Satoshi Iuchi
- Experimental Plant Division, RIKEN BioResource Center, Tsukuba, Ibaraki, 305-0074, Japan
| | - Lingaraj Sahoo
- Department of Biotechnology, Indian Institute of Technology Guwahati, Guwahati, Assam, 781039, India
| | - Masatomo Kobayashi
- Experimental Plant Division, RIKEN BioResource Center, Tsukuba, Ibaraki, 305-0074, Japan
| | | | - Hiroyuki Koyama
- Faculty of Applied Biological Sciences, Gifu University, Gifu, 501-1193, Japan
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Lan T, You J, Kong L, Yu M, Liu M, Yang Z. The interaction of salicylic acid and Ca(2+) alleviates aluminum toxicity in soybean (Glycine max L.). PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2016; 98:146-54. [PMID: 26691059 DOI: 10.1016/j.plaphy.2015.11.019] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/21/2015] [Revised: 11/24/2015] [Accepted: 11/26/2015] [Indexed: 05/08/2023]
Abstract
Both calcium ion (Ca(2+)) and salicylic acid (SA) influence various stress responses in plants. In acidic soils, aluminum (Al) toxicity adversely affects crop yield. In this study, we determined the influences of Ca(2+) and SA on root elongation, Al accumulation, and citrate secretion in soybean plant. We also investigated the activity of antioxidative enzymes in Al-exposed soybean roots. Root elongation was severally inhibited when the roots were exposed to 30 μM Al. The Al-induced inhibition of root elongation was ameliorated by Ca(2+) and SA but aggravated by Ca(2+) channel inhibitor (VP), CaM antagonists (TFP), Ca(2+) chelator (EGTA), and SA biosynthesis inhibitor (PAC). Furthermore, 1.0 mM CaCl2 and 10 μM SA reduced the accumulation of Al in roots, but their inhibitors stimulated the accumulation of Al in roots. Citrate secretion from these roots increased with the addition of either 1.0 mM CaCl2 or 10 μM SA but did not increase significantly when treated with higher Ca(2+) concentration. Enzymatic analysis showed that Ca(2+) and SA stimulated the activities of superoxidase (SOD), peroxidase (POD), and ascorbate peroxidase (APX) in Al-treated roots. In addition, SA restored the inhibition of Ca(2+) inhibitors on root elongation and Al content. Thus, both Ca(2+) and SA contribute to Al tolerance in soybean. Furthermore, Ca(2+) supplements rapidly increased Al-induced accumulation of free-SA or conjugated SA (SAG), while Ca(2+) inhibitors delayed the accumulation of SA for more than 8 h. Within 4 h of treatment, SA increased cytosolic Ca(2+) concentration in Al-treated roots, and upregulated the expression of four genes that possibly encode calmodulin-like (CML) proteins. These findings indicate that SA is involved in Ca(2+)-mediated signal transduction pathways in Al tolerance.
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Affiliation(s)
- Tu Lan
- College of Plant Science, Jilin University, Changchun 130062, PR China; Laboratory of Soil and Plant Molecular Genetics, Jilin University, Changchun 130062, PR China
| | - Jiangfeng You
- College of Plant Science, Jilin University, Changchun 130062, PR China; Laboratory of Soil and Plant Molecular Genetics, Jilin University, Changchun 130062, PR China
| | - Lingnan Kong
- College of Plant Science, Jilin University, Changchun 130062, PR China; Laboratory of Soil and Plant Molecular Genetics, Jilin University, Changchun 130062, PR China
| | - Miao Yu
- College of Plant Science, Jilin University, Changchun 130062, PR China; Laboratory of Soil and Plant Molecular Genetics, Jilin University, Changchun 130062, PR China
| | - Minghui Liu
- College of Plant Science, Jilin University, Changchun 130062, PR China; Laboratory of Soil and Plant Molecular Genetics, Jilin University, Changchun 130062, PR China
| | - Zhenming Yang
- College of Plant Science, Jilin University, Changchun 130062, PR China; Laboratory of Soil and Plant Molecular Genetics, Jilin University, Changchun 130062, PR China.
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Shavrukov Y, Hirai Y. Good and bad protons: genetic aspects of acidity stress responses in plants. JOURNAL OF EXPERIMENTAL BOTANY 2016; 67:15-30. [PMID: 26417020 DOI: 10.1093/jxb/erv437] [Citation(s) in RCA: 22] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/15/2023]
Abstract
Physiological aspects of acidity stress in plants (synonymous with H(+) rhizotoxicity or low-pH stress) have long been a focus of research, in particular with respect to acidic soils where aluminium and H(+) rhizotoxicities often co-occur. However, toxic H(+) and Al(3+) elicit different response mechanisms in plants, and it is important to consider their effects separately. The primary aim of this review was to provide the current state of knowledge regarding the genetics of the specific reactions to low-pH stress in growing plants. A comparison of the results gleaned from quantitative trait loci analysis and global transcriptome profiling of plants in response to high proton concentrations revealed a two-stage genetic response: (i) in the short-term, proton pump H(+)-ATPases present the first barrier in root cells, allocating an excess of H(+) into either the apoplast or vacuole; the ensuing defence signaling system involves auxin, salicylic acid, and methyl jasmonate, which subsequently initiate expression of STOP and DREB transcription factors as well as chaperone ROF; (2) the long-term response includes other genes, such as alternative oxidase and type II NAD(P)H dehydrogenase, which act to detoxify dangerous reactive oxygen species in mitochondria, and help plants better manage the stress. A range of transporter genes including those for nitrate (NTR1), malate (ALMT1), and heavy metals are often up-regulated by H(+) rhizotoxicity. Expansins, cell-wall-related genes, the γ-aminobutyric acid shunt and biochemical pH-stat genes also reflect changes in cell metabolism and biochemistry in acidic conditions. However, the genetics underlying the acidity stress response of plants is complicated and only fragmentally understood.
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Affiliation(s)
- Yuri Shavrukov
- School of Agriculture, Food and Wine, University of Adelaide, Waite Campus, Urrbrae, SA 5064, Australia School of Biological Sciences, Flinders University, Bedford Park, SA 5042, Australia
| | - Yoshihiko Hirai
- The Graduate School of Environmental and Life Science, Okayama University, Okayama, Japan
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Lynch JP, Wojciechowski T. Opportunities and challenges in the subsoil: pathways to deeper rooted crops. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:2199-210. [PMID: 25582451 PMCID: PMC4986715 DOI: 10.1093/jxb/eru508] [Citation(s) in RCA: 138] [Impact Index Per Article: 15.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2014] [Revised: 11/04/2014] [Accepted: 11/28/2014] [Indexed: 05/18/2023]
Abstract
Greater exploitation of subsoil resources by annual crops would afford multiple benefits, including greater water and N acquisition in most agroecosystems, and greater sequestration of atmospheric C. Constraints to root growth in the subsoil include soil acidity (an edaphic stress complex consisting of toxic levels of Al, inadequate levels of P and Ca, and often toxic levels of Mn), soil compaction, hypoxia, and suboptimal temperature. Multiple root phenes under genetic control are associated with adaptation to these constraints, opening up the possibility of breeding annual crops with root traits improving subsoil exploration. Adaptation to Al toxicity, hypoxia, and P deficiency are intensively researched, adaptation to soil hardness and suboptimal temperature less so, and adaptations to Ca deficiency and Mn toxicity are poorly understood. The utility of specific phene states may vary among soil taxa and management scenarios, interactions which in general are poorly understood. These traits and issues merit research because of their potential value in developing more productive, sustainable, benign, and resilient agricultural systems.
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Affiliation(s)
- Jonathan P Lynch
- Department of Plant Science, The Pennsylvania State University, University Park, PA 16802, USA IBG2, Forschungszentrum Jülich, Wilhelm-Johnen-Straße, Jülich D-52445, Germany
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Li G, Xu W, Kronzucker HJ, Shi W. Ethylene is critical to the maintenance of primary root growth and Fe homeostasis under Fe stress in Arabidopsis. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:2041-54. [PMID: 25711703 PMCID: PMC4378635 DOI: 10.1093/jxb/erv005] [Citation(s) in RCA: 18] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/28/2014] [Revised: 12/16/2014] [Accepted: 12/19/2014] [Indexed: 05/18/2023]
Abstract
Iron (Fe) is an essential microelement but is highly toxic when in excess. The response of plant roots to Fe toxicity and the nature of the regulatory pathways engaged are poorly understood. Here, we examined the response to excess Fe exposure in Arabidopsis wild type and ethylene mutants with a focus on primary root growth and the role of ethylene. We showed that excess Fe arrested primary root growth by decreasing both cell elongation and division, and principally resulteds from direct external Fe contact at the root tip. Pronounced ethylene, but not abscisic acid, evolution was associated with excess Fe exposure. Ethylene antagonists intensified root growth inhibition in the wild type, while the inhibition was significantly reduced in ethylene-overproduction mutants. We showed that ethylene plays a positive role in tissue Fe homeostasis, even in the absence of iron-plaque formation. Ethylene reduced Fe concentrations in the stele, xylem, and shoot. Furthermore, ethylene increased the expression of genes encoding Fe-sequestering ferritins. Additionally, ethylene significantly enhanced root K(+) status and upregulated K(+)-transporter (HAK5) expression. Our findings highlight the important role of ethylene in tissue Fe and K homeostasis and primary root growth under Fe stress in Arabidopsis.
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Affiliation(s)
- Guangjie Li
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No. 71 East Beijing Road, Nanjing 210008, PR China
| | - Weifeng Xu
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No. 71 East Beijing Road, Nanjing 210008, PR China
| | - Herbert J Kronzucker
- Department of Biological Sciences, University of Toronto, 1265 Military Trail, Toronto, Ontario M1C 1A4, Canada
| | - Weiming Shi
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, No. 71 East Beijing Road, Nanjing 210008, PR China
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Tokizawa M, Kobayashi Y, Saito T, Kobayashi M, Iuchi S, Nomoto M, Tada Y, Yamamoto YY, Koyama H. SENSITIVE TO PROTON RHIZOTOXICITY1, CALMODULIN BINDING TRANSCRIPTION ACTIVATOR2, and other transcription factors are involved in ALUMINUM-ACTIVATED MALATE TRANSPORTER1 expression. PLANT PHYSIOLOGY 2015; 167:991-1003. [PMID: 25627216 PMCID: PMC4348791 DOI: 10.1104/pp.114.256552] [Citation(s) in RCA: 89] [Impact Index Per Article: 9.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/29/2014] [Accepted: 01/22/2015] [Indexed: 05/18/2023]
Abstract
In Arabidopsis (Arabidopsis thaliana) the root apex is protected from aluminum (Al) rhizotoxicity by excretion of malate, an Al chelator, by ALUMINUM-ACTIVATED MALATE TRANSPORTER1 (AtALMT1). AtALMT1 expression is fundamentally regulated by the SENSITIVE TO PROTON RHIZOTOXICITY1 (STOP1) zinc finger protein, but other transcription factors have roles that enable Al-inducible expression with a broad dynamic range. In this study, we characterized multiple cis-elements in the AtALMT1 promoter that interact with transcription factors. In planta complementation assays of AtALMT1 driven by 5' truncated promoters of different lengths showed that the promoter region between -540 and 0 (the first ATG) restored the Al-sensitive phenotype of atalm1 and thus contains cis-elements essential for AtALMT1 expression for Al tolerance. Computation of overrepresented octamers showed that eight regions in this promoter region contained potential cis-elements involved in Al induction and STOP1 regulation. Mutation in a position around -297 from the first ATG completely inactivated AtALMT1 expression and Al response. In vitro binding assays showed that this region contained the STOP1 binding site, which accounted for the recognition by four zinc finger domains of the protein. Other positions were characterized as cis-elements that regulated expression by repressors and activators and a transcription factor that determines root tip expression of AtALMT1. From the consensus of known cis-elements, we identified CALMODULIN-BINDING TRANSCRIPTION ACTIVATOR2 to be an activator of AtALMT1 expression. Al-inducible expression of AtALMT1 changed transcription starting sites, which increased the abundance of transcripts with a shortened 5' untranslated region. The present analyses identified multiple mechanisms that regulate AtALMT1 expression.
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Affiliation(s)
- Mutsutomo Tokizawa
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
| | - Yuriko Kobayashi
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
| | - Tatsunori Saito
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
| | - Masatomo Kobayashi
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
| | - Satoshi Iuchi
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
| | - Mika Nomoto
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
| | - Yasuomi Tada
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
| | - Yoshiharu Y Yamamoto
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
| | - Hiroyuki Koyama
- Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan (M.T., Y.K., T.S., Y.Y.Y., H.K.);RIKEN BioResource Center, Ibaraki 305-0074, Japan (M.K., S.I.); andDivision of Biological Science, Graduate School of Science (M.N.), and The Center for Gene Research, Division of Biological Science (Y.T.), Nagoya University, Aichi 464-8602, Japan
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Wagatsuma T, Khan MSH, Watanabe T, Maejima E, Sekimoto H, Yokota T, Nakano T, Toyomasu T, Tawaraya K, Koyama H, Uemura M, Ishikawa S, Ikka T, Ishikawa A, Kawamura T, Murakami S, Ueki N, Umetsu A, Kannari T. Higher sterol content regulated by CYP51 with concomitant lower phospholipid content in membranes is a common strategy for aluminium tolerance in several plant species. JOURNAL OF EXPERIMENTAL BOTANY 2015; 66:907-18. [PMID: 25416794 PMCID: PMC4321553 DOI: 10.1093/jxb/eru455] [Citation(s) in RCA: 10] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/22/2023]
Abstract
Several studies have shown that differences in lipid composition and in the lipid biosynthetic pathway affect the aluminium (Al) tolerance of plants, but little is known about the molecular mechanisms underlying these differences. Phospholipids create a negative charge at the surface of the plasma membrane and enhance Al sensitivity as a result of the accumulation of positively charged Al(3+) ions. The phospholipids will be balanced by other electrically neutral lipids, such as sterols. In the present research, Al tolerance was compared among pea (Pisum sativum) genotypes. Compared with Al-tolerant genotypes, the Al-sensitive genotype accumulated more Al in the root tip, had a less intact plasma membrane, and showed a lower expression level of PsCYP51, which encodes obtusifoliol-14α-demethylase (OBT 14DM), a key sterol biosynthetic enzyme. The ratio of phospholipids to sterols was higher in the sensitive genotype than in the tolerant genotypes, suggesting that the sterol biosynthetic pathway plays an important role in Al tolerance. Consistent with this idea, a transgenic Arabidopsis thaliana line with knocked-down AtCYP51 expression showed an Al-sensitive phenotype. Uniconazole-P, an inhibitor of OBT 14DM, suppressed the Al tolerance of Al-tolerant genotypes of maize (Zea mays), sorghum (Sorghum bicolor), rice (Oryza sativa), wheat (Triticum aestivum), and triticale (×Triticosecale Wittmark cv. Currency). These results suggest that increased sterol content, regulated by CYP51, with concomitant lower phospholipid content in the root tip, results in lower negativity of the plasma membrane. This appears to be a common strategy for Al tolerance among several plant species.
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Affiliation(s)
- Tadao Wagatsuma
- Faculty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan
| | | | - Toshihiro Watanabe
- Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan
| | - Eriko Maejima
- Graduate School of Agriculture, Hokkaido University, Sapporo 060-8589, Japan
| | - Hitoshi Sekimoto
- Faculty of Agriculture, Utsunomiya University, Utsunomiya 321-8505, Japan
| | - Takao Yokota
- Department of Bioscience, Teikyo University, Utsunomiya 320-8551, Japan
| | - Takeshi Nakano
- Antibiotics Laboratory RIKEN, Wako, Saitama 351-0198, Japan; RIKEN Centre for Sustainable Resource Science, Wako, Saitama 351-0198, Japan; CREST, Japan Science and Technology Agency (JST), Japan
| | - Tomonobu Toyomasu
- Faculty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan
| | - Keitaro Tawaraya
- Faculty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan
| | - Hiroyuki Koyama
- Faculty of Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan
| | - Matsuo Uemura
- Cryobiosystem Research Centre, Faculty of Agriculture, Iwate University, Morioka 020-8550, Japan
| | - Satoru Ishikawa
- National Institute for Agro-Environmental Science, Tsukuba 305-8604, Japan
| | - Takashi Ikka
- Faculty of Agriculture, Shizuoka University, Shizuoka 422-8529, Japan
| | - Akifumi Ishikawa
- Faculty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan
| | - Takeshi Kawamura
- Faculty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan
| | - Satoshi Murakami
- Faculty of Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan
| | - Nozomi Ueki
- Faculty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan
| | - Asami Umetsu
- Faculty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan
| | - Takayuki Kannari
- Faculty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan
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Surface Electrical Potentials of Root Cell Plasma Membranes: Implications for Ion Interactions, Rhizotoxicity, and Uptake. Int J Mol Sci 2014; 15:22661-22677. [PMID: 25493475 PMCID: PMC4284729 DOI: 10.3390/ijms151222661] [Citation(s) in RCA: 19] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/14/2014] [Revised: 11/28/2014] [Accepted: 12/01/2014] [Indexed: 11/25/2022] Open
Abstract
Many crop plants are exposed to heavy metals and other metals that may intoxicate the crop plants themselves or consumers of the plants. The rhizotoxicity of heavy metals is influenced strongly by the root cell plasma membrane (PM) surface’s electrical potential (ψ0). The usually negative ψ0 is created by negatively charged constituents of the PM. Cations in the rooting medium are attracted to the PM surface and anions are repelled. Addition of ameliorating cations (e.g., Ca2+ and Mg2+) to the rooting medium reduces the effectiveness of cationic toxicants (e.g., Cu2+ and Pb2+) and increases the effectiveness of anionic toxicants (e.g., SeO42− and H2AsO4−). Root growth responses to ions are better correlated with ion activities at PM surfaces ({IZ}0) than with activities in the bulk-phase medium ({IZ}b) (IZ denotes an ion with charge Z). Therefore, electrostatic effects play a role in heavy metal toxicity that may exceed the role of site-specific competition between toxicants and ameliorants. Furthermore, ψ0 controls the transport of ions across the PM by influencing both {IZ}0 and the electrical potential difference across the PM from the outer surface to the inner surface (Em,surf). Em,surf is a component of the driving force for ion fluxes across the PM and controls ion-channel voltage gating. Incorporation of {IZ}0 and Em,surf into quantitative models for root metal toxicity and uptake improves risk assessments of toxic metals in the environment. These risk assessments will improve further with future research on the application of electrostatic theory to heavy metal phytotoxicity in natural soils and aquatic environments.
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Nunes-Nesi A, Santos Brito D, Inostroza-Blancheteau C, Fernie AR, Araújo WL. The complex role of mitochondrial metabolism in plant aluminum resistance. TRENDS IN PLANT SCIENCE 2014; 19:399-407. [PMID: 24462392 DOI: 10.1016/j.tplants.2013.12.006] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2013] [Revised: 12/16/2013] [Accepted: 12/19/2013] [Indexed: 05/18/2023]
Abstract
The majority of soils in tropical and subtropical regions are acidic, rendering the soil a major limitation to plant growth and food production in many developing countries. High concentrations of soluble aluminum cations, particularly Al3+, are largely responsible for reducing root elongation and disrupting nutrient and water uptake. Two mechanisms, namely, the exclusion mechanism and tolerance mechanism, have been proposed to govern Al3+ resistance in plants. Both mechanisms are related to mitochondrial activity as well as to mitochondrial metabolism and organic acid transport. Here, we review the considerable progress that has been made towards developing an understanding of the physiological role of mitochondria in the aluminum response and discuss the potential for using this knowledge in next-generation engineering.
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Affiliation(s)
- Adriano Nunes-Nesi
- Max Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-000 Viçosa, MG, Brazil.
| | - Danielle Santos Brito
- Max Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-000 Viçosa, MG, Brazil
| | - Claudio Inostroza-Blancheteau
- Núcleo de Investigación en Producción Alimentaría, Facultad de Recursos Naturales, Escuela de Agronomía, Universidad Católica de Temuco, P.O. Box 56-D, Temuco, Chile
| | - Alisdair R Fernie
- Central Metabolism Group, Max Planck Institute of Molecular Plant Physiology, Am Muehlenberg 1, D-14476 Potsdam-Golm, Germany
| | - Wagner L Araújo
- Max Planck Partner Group at the Departamento de Biologia Vegetal, Universidade Federal de Viçosa, 36570-000 Viçosa, MG, Brazil.
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Sawaki Y, Kobayashi Y, Kihara-Doi T, Nishikubo N, Kawazu T, Kobayashi M, Kobayashi Y, Iuchi S, Koyama H, Sato S. Identification of a STOP1-like protein in Eucalyptus that regulates transcription of Al tolerance genes. PLANT SCIENCE : AN INTERNATIONAL JOURNAL OF EXPERIMENTAL PLANT BIOLOGY 2014; 223:8-15. [PMID: 24767110 DOI: 10.1016/j.plantsci.2014.02.011] [Citation(s) in RCA: 30] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/28/2013] [Revised: 02/18/2014] [Accepted: 02/24/2014] [Indexed: 05/06/2023]
Abstract
Tolerance to soil acidity is an important trait for eucalyptus clones that are introduced to commercial forestry plantations in pacific Asian countries, where acidic soil is dominant in many locations. A conserved transcription factor regulating aluminum (Al) and proton (H⁺) tolerance in land-plant species, STOP1 (SENSITIVE TOPROTON RHIZOTOXICITY 1)-like protein, was isolated by polymerase chain reaction-based cloning, and then suppressed by RNA interference in hairy roots produced by Agrobacterium rhizogenes-mediated transformation. Eucalyptus STOP1-like protein complemented proton tolerance in an Arabidopsis thaliana stop1-mutant, and localized to the nucleus in a transient assay of a green fluorescent protein fusion protein expressed in tobacco leaves by Agrobacterium tumefaciens-mediated transformation. Genes encoding a citrate transporting MULTIDRUGS AND TOXIC COMPOUND EXTRUSION protein and an orthologue of ALUMINUM SENSITIVE 3 were suppressed in transgenic hairy roots in which the STOP1 orthologue was knocked down. In summary, we identified a series of genes for Al-tolerance in eucalyptus, including a gene for STOP1-like protein and the Al-tolerance genes it regulates. These genes may be useful for molecular breeding and genomic selection of elite clones to introduce into acid soil regions.
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Affiliation(s)
- Yoshiharu Sawaki
- Forestry Research Institute, Oji Paper Co., Ltd., 24-9 Nobono-Cho, Kameyama, Mie 519-0212, Japan
| | - Yuriko Kobayashi
- Forestry Research Institute, Oji Paper Co., Ltd., 24-9 Nobono-Cho, Kameyama, Mie 519-0212, Japan; Laboratory of Plant Cell Technology, Faculty of Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
| | - Tomonori Kihara-Doi
- Forest Technology Laboratories, Research & Development Division, Oji Paper Co., Ltd., 1-10-6 Shinonome, Koto-ku, Tokyo 135-8558, Japan
| | - Nobuyuki Nishikubo
- Forest Technology Laboratories, Research & Development Division, Oji Paper Co., Ltd., 1-10-6 Shinonome, Koto-ku, Tokyo 135-8558, Japan
| | - Tetsu Kawazu
- Forest Technology Laboratories, Research & Development Division, Oji Paper Co., Ltd., 1-10-6 Shinonome, Koto-ku, Tokyo 135-8558, Japan
| | - Masatomo Kobayashi
- BioResources Center, RIKEN, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan
| | - Yasufumi Kobayashi
- Laboratory of Plant Cell Technology, Faculty of Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
| | - Satoshi Iuchi
- BioResources Center, RIKEN, 3-1-1 Koyadai, Tsukuba, Ibaraki 305-0074, Japan
| | - Hiroyuki Koyama
- Laboratory of Plant Cell Technology, Faculty of Applied Biological Sciences, Gifu University, 1-1 Yanagido, Gifu 501-1193, Japan
| | - Shigeru Sato
- Forest Technology Laboratories, Research & Development Division, Oji Paper Co., Ltd., 1-10-6 Shinonome, Koto-ku, Tokyo 135-8558, Japan.
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Kobayashi Y, Ohyama Y, Kobayashi Y, Ito H, Iuchi S, Fujita M, Zhao CR, Tanveer T, Ganesan M, Kobayashi M, Koyama H. STOP2 activates transcription of several genes for Al- and low pH-tolerance that are regulated by STOP1 in Arabidopsis. MOLECULAR PLANT 2014; 7:311-22. [PMID: 23935008 DOI: 10.1093/mp/sst116] [Citation(s) in RCA: 84] [Impact Index Per Article: 8.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/03/2023]
Abstract
The zinc-finger protein STOP1 (sensitive to proton rhizotoxicity 1) regulates transcription of multiple genes critical for tolerance to aluminum (Al) and low pH in Arabidopsis. We evaluated the contributions of genes that are suppressed in the stop1 mutant to Al- and low pH-tolerance using T-DNA-inserted disruptants, and transgenic stop1 mutants expressing each of the suppressed genes. STOP2, a STOP1 homolog, partially recovered Al- and low pH-tolerance by recovering the expression of genes regulated by STOP1. Growth and root tip viability under proton stress were partially rescued in the STOP2-complemented line. STOP2 localized in the nucleus and regulated transcription of two genes (PGIP1 and PGIP2) associated with cell wall stabilization at low pH. GUS assays revealed that STOP1 and STOP2 showed similar cellular expression in the root. However, the expression level of STOP2 was much lower than that of STOP1. In a STOP1 promoter::STOP2-complemented line, Al tolerance was slightly recovered, concomitant with the recovery of expression of ALS3 (aluminum sensitive 3) and AtMATE (Arabidopsis thaliana multidrug and toxic compound extrusion), while the expression of AtALMT1 (aluminum-activated malate transporter 1) was not recovered. These analyses indicated that STOP2 is a physiologically minor isoform of STOP1, but it can activate expression of some genes regulated by STOP1.
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Affiliation(s)
- Yuriko Kobayashi
- Laboratory of Plant Cell Technology, Faculty of Applied Biological Sciences, Gifu University, Gifu 501-1193, Japan
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Maejima E, Watanabe T, Osaki M, Wagatsuma T. Phosphorus deficiency enhances aluminum tolerance of rice (Oryza sativa) by changing the physicochemical characteristics of root plasma membranes and cell walls. JOURNAL OF PLANT PHYSIOLOGY 2014; 171:9-15. [PMID: 24331414 DOI: 10.1016/j.jplph.2013.09.012] [Citation(s) in RCA: 27] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/10/2013] [Revised: 09/09/2013] [Accepted: 09/26/2013] [Indexed: 05/25/2023]
Abstract
The negative charge at the root surface is mainly derived from the phosphate group of phospholipids in plasma membranes (PMs) and the carboxyl group of pectins in cell walls, which are usually neutralized by calcium (Ca) ions contributing to maintain the root integrity. The major toxic effect of aluminum (Al) in plants is the inhibition of root elongation due to Al binding tightly to these negative sites in exchange for Ca. Because phospholipid and pectin concentrations decrease in roots of some plant species under phosphorus (P)-limiting conditions, we hypothesized that rice (Oryza sativa L.) seedlings grown under P-limiting conditions would demonstrate enhanced Al tolerance because of their fewer sites on their roots. For pretreatment, rice seedlings were grown in a culture solution with (+P) or without (-P) P. Thereafter, the seedlings were transferred to a solution with or without Al, and the lipid, pectin, hemicellulose, and mineral concentrations as well as Al tolerance were then determined. Furthermore, the low-Ca tolerance of P-pretreated seedlings was investigated under different pH conditions. The concentrations of phospholipids and pectins in the roots of rice receiving -P pretreatment were lower than those receiving +P pretreatment. As expected, seedlings receiving the -P pretreatment showed enhanced Al tolerance, accompanied by the decrease in Al accumulation in their roots and shoots. This low P-induced enhanced Al tolerance was not explained by enhanced antioxidant activities or organic acid secretion from roots but by the decrease in phospholipid and pectin concentrations in the roots. In addition, low-Ca tolerance of the roots was enhanced by the -P pretreatment under low pH conditions. This low P-induced enhancement of low-Ca tolerance may be related to the lower Ca requirement to maintain PM and cell wall structures in roots of rice with fewer phospholipids and pectins.
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Affiliation(s)
- Eriko Maejima
- Research Faculty of Agriculture, Hokkaido University, Kita 9, Nishi 9, Kitaku, Sapporo 060-8589, Japan
| | - Toshihiro Watanabe
- Research Faculty of Agriculture, Hokkaido University, Kita 9, Nishi 9, Kitaku, Sapporo 060-8589, Japan.
| | - Mitsuru Osaki
- Research Faculty of Agriculture, Hokkaido University, Kita 9, Nishi 9, Kitaku, Sapporo 060-8589, Japan
| | - Tadao Wagatsuma
- Faculty of Agriculture, Yamagata University, Tsuruoka 997-8555, Japan
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