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Gala R, Al Sammarraie M, Padilla RS, Zhou Z, Neely AL, Kinaia BM. Digitally guided root removal and simultaneous implant placement: A case study. Clin Adv Periodontics 2024. [PMID: 38708920 DOI: 10.1002/cap.10292] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Revised: 04/13/2024] [Accepted: 04/15/2024] [Indexed: 05/07/2024]
Abstract
BACKGROUND Encountering a retained root tip post-extraction and prior to implant placement is a possible clinical complication. There are numerous approaches for removing retained roots that may be traumatic or atraumatic. Regardless of the approach, careful treatment planning is important to minimize complications, reduce morbidity, and preserve bony structures. The aim of the current case study is to introduce a technique and digitally generated device used for identifying and atraumatically removing a retained root tip and simultaneously placing a stable dental implant. METHODS A 63-year-old female with a history of myocardial infarction, hypertension, and acute pancreatitis presented for implant placement at site #5. Clinical examination revealed adequate interocclusal, mesiodistal, and buccolingual dimensions for implant placement. Radiographic examination using cone beam computed tomography revealed that retained root #5 interfered with implant placement. Digital planning was used to extract the root tip with minimal trauma to maintain adequate bone for simultaneous implant placement with good primary stability. RESULTS The follow-ups at 1, 3, and 6 weeks and 4, 8, and 10 months revealed good bone preservation with an osseointegrated implant. CONCLUSIONS Employment of digital planning to create a palatal window allowed excellent accuracy in removing the retained root while maintaining the bony foundation for a well osseointegrated dental implant. KEY POINTS Pre-planning using cone beam computed tomography scan merged with an intraoral digital scan is necessary for precise location of a retained root and correct implant placement with excellent primary stability. A digitally planned 3D surgical guide is a useful method for extracting retained roots during implant placement to minimize bone damage. Digital planning provides a precise and minimally invasive implant surgery.
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Affiliation(s)
- Roksolana Gala
- Division of Graduate Studies, University of Detroit Mercy School of Dentistry, Detroit, Michigan, USA
| | - Mohammed Al Sammarraie
- Division of Graduate Studies, University of Detroit Mercy School of Dentistry, Detroit, Michigan, USA
| | - Rocio Sanchez Padilla
- Division of Graduate Studies, University of Detroit Mercy School of Dentistry, Detroit, Michigan, USA
| | - Zheng Zhou
- Division of Graduate Studies, University of Detroit Mercy School of Dentistry, Detroit, Michigan, USA
- Private Practice, Sterling Heights, Michigan, USA
| | - Anthony L Neely
- Division of Graduate Studies, University of Detroit Mercy School of Dentistry, Detroit, Michigan, USA
- Private Practice, Southfield, Michigan, USA
| | - Bassam M Kinaia
- Division of Graduate Studies, University of Detroit Mercy School of Dentistry, Detroit, Michigan, USA
- Private Practice, Sterling Heights, Michigan, USA
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Cai Z, Dai Y, Jin X, Xu H, Huang Z, Xie Z, Yu X, Luo J. Ambient temperature regulates root circumnutation in rice through the ethylene pathway: transcriptome analysis reveals key genes involved. Front Plant Sci 2024; 15:1348295. [PMID: 38525142 PMCID: PMC10957643 DOI: 10.3389/fpls.2024.1348295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/02/2023] [Accepted: 02/20/2024] [Indexed: 03/26/2024]
Abstract
Plant roots are constantly prepared to adjust their growth trajectories to avoid unfavorable environments, and their ability to reorient is particularly crucial for survival. Under laboratory conditions, this continuous reorientation of the root tip is manifested as coiling or waving, which we refer to as root circumnutation. However, the effect of ambient temperature (AT) on root circumnutation remains unexplored. In this study, rice seedlings were employed to assess the impact of varying ATs on root circumnutation. The role of ethylene in mediating root circumnutation under elevated AT was examined using the ethylene biosynthesis inhibitor aminooxyacetic acid (AOA) and the ethylene perception antagonist silver thiosulfate (STS). Furthermore, transcriptome sequencing, weighted gene co-expression network analysis, and real-time quantitative PCR were utilized to analyze gene expressions in rice root tips under four distinct treatments: 25°C, 35°C, 35°C+STS, and 35°C+AOA. As a result, genes associated with ethylene synthesis and signaling (OsACOs and OsERFs), auxin synthesis and transport (OsYUCCA6, OsABCB15, and OsNPFs), cell elongation (OsEXPAs, OsXTHs, OsEGL1, and OsEXORDIUMs), as well as the inhibition of root curling (OsRMC) were identified. Notably, the expression levels of these genes increased with rising temperatures above 25°C. This study is the first to demonstrate that elevated AT can induce root circumnutation in rice via the ethylene pathway and proposes a potential molecular model through the identification of key genes. These findings offer valuable insights into the growth regulation mechanism of plant roots under elevated AT conditions.
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Affiliation(s)
- Zeping Cai
- School of Tropical Agriculture and Forestry, Hainan University, Hainan, China
| | - Yinuo Dai
- School of Tropical Agriculture and Forestry, Hainan University, Hainan, China
| | - Xia Jin
- School of Tropical Agriculture and Forestry, Hainan University, Hainan, China
| | - Hui Xu
- School of Tropical Agriculture and Forestry, Hainan University, Hainan, China
| | - Zhen Huang
- School of Tropical Agriculture and Forestry, Hainan University, Hainan, China
| | - Zhenyu Xie
- School of Tropical Agriculture and Forestry, Hainan University, Hainan, China
| | - Xudong Yu
- School of Tropical Agriculture and Forestry, Hainan University, Hainan, China
| | - Jiajia Luo
- School of Tropical Agriculture and Forestry, Hainan University, Hainan, China
- Tropical Crops Genetic Resources Institute, Chinese Academy of Tropical Agricultural Sciences, Haikou, Hainan, China
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3
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Bin Rubaia'an MA, Alotaibi MK, Neyaz AA. A Minimally Invasive Technique for the Retrieval of Fractured Root Tips. Cureus 2023; 15:e41458. [PMID: 37546131 PMCID: PMC10404123 DOI: 10.7759/cureus.41458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/03/2023] [Indexed: 08/08/2023] Open
Abstract
Exodontia, the removal of a compromised tooth, ideally consists of the painless removal of the tooth or tooth root, with minimal trauma to the surrounding tissues, resulting in complete healing without creating postoperative prosthetic problems. Fractures of the tooth's root tip during exodontia can be common in some cases, such as in teeth with irregular root morphology or severely decayed teeth. The current article presents a technical report in which endodontic files made it possible to remove a fractured root tip from a maxillary third molar without using force.
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Affiliation(s)
| | | | - Aymen A Neyaz
- College of Dentistry, Riyadh Elm University, Riyadh, SAU
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Sowders JM, Tanaka K. A histochemical reporter system to study extracellular ATP response in plants. Front Plant Sci 2023; 14:1183335. [PMID: 37332691 PMCID: PMC10272726 DOI: 10.3389/fpls.2023.1183335] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/10/2023] [Accepted: 05/09/2023] [Indexed: 06/20/2023]
Abstract
When cells experience acute mechanical distress, they release ATP from their cellular compartment into the surrounding microenvironment. This extracellular ATP (eATP) can then act as a danger signal-signaling cellular damage. In plants, cells adjacent to damage detect rising eATP concentrations through the cell-surface receptor kinase, P2K1. Following eATP perception, P2K1 initiates a signaling cascade mobilizing plant defense. Recent transcriptome analysis revealed a profile of eATP-induced genes sharing pathogen- and wound-response hallmarks-consistent with a working model for eATP as a defense-mobilizing danger signal. To build on the transcriptional footprint and broaden our understanding of dynamic eATP signaling responses in plants, we aimed to i) generate a visual toolkit for eATP-inducible marker genes using a β-glucuronidase (GUS) reporter system and ii) evaluate the spatiotemporal response of these genes to eATP in plant tissues. Here, we demonstrate that the promoter activities of five genes, ATPR1, ATPR2, TAT3, WRKY46, and CNGC19, were highly sensitive to eATP in the primary root meristem and elongation zones with maximal responses at 2 h after treatment. These results suggest the primary root tip as a hub to study eATP-signaling activity and provide a proof-of-concept toward using these reporters to further dissect eATP and damage signaling in plants.
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Affiliation(s)
- Joel M. Sowders
- Department of Plant Pathology, College of Agricultural, Human, and Natural Resource Sciences, Washington State University, Pullman, WA, United States
- Molecular Plant Sciences Program, Washington State University, Pullman, WA, United States
| | - Kiwamu Tanaka
- Department of Plant Pathology, College of Agricultural, Human, and Natural Resource Sciences, Washington State University, Pullman, WA, United States
- Molecular Plant Sciences Program, Washington State University, Pullman, WA, United States
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Ďúranová H, Šimora V, Ďurišová Ľ, Olexiková L, Kovár M, Požgajová M. Modifications in Ultrastructural Characteristics and Redox Status of Plants under Environmental Stress: A Review. Plants (Basel) 2023; 12:1666. [PMID: 37111889 PMCID: PMC10144148 DOI: 10.3390/plants12081666] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/09/2023] [Revised: 03/30/2023] [Accepted: 04/05/2023] [Indexed: 06/19/2023]
Abstract
The rate of global environmental change is unprecedented, with climate change causing an increase in the oscillation and intensification of various abiotic stress factors that have negative impacts on crop production. This issue has become an alarming global concern, especially for countries already facing the threat of food insecurity. Abiotic stressors, such as drought, salinity, extreme temperatures, and metal (nanoparticle) toxicities, are recognized as major constraints in agriculture, and are closely associated with the crop yield penalty and losses in food supply. In order to combat abiotic stress, it is important to understand how plant organs adapt to changing conditions, as this can help produce more stress-resistant or stress-tolerant plants. The investigation of plant tissue ultrastructure and subcellular components can provide valuable insights into plant responses to abiotic stress-related stimuli. In particular, the columella cells (statocytes) of the root cap exhibit a unique architecture that is easily recognizable under a transmission electron microscope, making them a useful experimental model for ultrastructural observations. In combination with the assessment of plant oxidative/antioxidative status, both approaches can shed more light on the cellular and molecular mechanisms involved in plant adaptation to environmental cues. This review summarizes life-threatening factors of the changing environment that lead to stress-related damage to plants, with an emphasis on their subcellular components. Additionally, selected plant responses to such conditions in the context of their ability to adapt and survive in a challenging environment are also described.
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Affiliation(s)
- Hana Ďúranová
- AgroBioTech Research Centre, Slovak University of Agriculture, Trieda Andreja Hlinku 2, 949 76 Nitra, Slovakia;
| | - Veronika Šimora
- AgroBioTech Research Centre, Slovak University of Agriculture, Trieda Andreja Hlinku 2, 949 76 Nitra, Slovakia;
| | - Ľuba Ďurišová
- Institute of Plant and Environmental Sciences, Faculty of Agrobiology and Food Resources, Slovak University of Agriculture in Nitra, Trieda Andreja Hlinku 2, 949 76 Nitra, Slovakia; (Ľ.Ď.); (M.K.)
| | - Lucia Olexiková
- Agricultural and Food Centre (NPPC), Research Institute for Animal Production Nitra, Hlohovecká 2, 951 41 Lužianky, Slovakia;
| | - Marek Kovár
- Institute of Plant and Environmental Sciences, Faculty of Agrobiology and Food Resources, Slovak University of Agriculture in Nitra, Trieda Andreja Hlinku 2, 949 76 Nitra, Slovakia; (Ľ.Ď.); (M.K.)
| | - Miroslava Požgajová
- AgroBioTech Research Centre, Slovak University of Agriculture, Trieda Andreja Hlinku 2, 949 76 Nitra, Slovakia;
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Abdirad S, Wu Y, Ghorbanzadeh Z, Tazangi SE, Amirkhani A, Fitzhenry MJ, Kazemi M, Ghaffari MR, Koobaz P, Zeinalabedini M, Habibpourmehraban F, Masoomi-Aladizgeh F, Atwell BJ, Mirzaei M, Salekdeh GH, Haynes PA. Proteomic analysis of the meristematic root zone in contrasting genotypes reveals new insights in drought tolerance in rice. Proteomics 2022; 22:e2200100. [PMID: 35920597 DOI: 10.1002/pmic.202200100] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2022] [Revised: 07/18/2022] [Accepted: 07/21/2022] [Indexed: 12/29/2022]
Abstract
Drought is responsible for major losses in rice production. Root tips contain meristematic and elongation zones that play major roles in determination of root traits and adaptive strategies to drought. In this study we analysed two contrasting genotypes of rice: IR64, a lowland, drought-susceptible, and shallow-rooting genotype; and Azucena, an upland, drought-tolerant, and deep-rooting genotype. Samples were collected of root tips of plants grown under control and water deficit stress conditions. Quantitative proteomics analysis resulted in the identification of 7294 proteins from the root tips of IR64 and 6307 proteins from Azucena. Data are available via ProteomeXchange with identifier PXD033343. Using a Partial Least Square Discriminant Analysis on 4170 differentially abundant proteins, 1138 statistically significant proteins across genotypes and conditions were detected. Twenty two enriched biological processes showing contrasting patterns between two genotypes in response to stress were detected through gene ontology enrichment analysis. This included identification of novel proteins involved in root elongation with specific expression patterns in Azucena, including four Expansins and seven Class III Peroxidases. We also detected an antioxidant network and a metallo-sulfur cluster assembly machinery in Azucena, with roles in reactive oxygen species and iron homeostasis, and positive effects on root cell cycle, growth and elongation.
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Affiliation(s)
- Somayeh Abdirad
- Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran (ABRII), Agricultural Research Education and Extension Organization (AREEO), Karaj, Iran
| | - Yunqi Wu
- Australian Proteome Analysis Facility, Macquarie University, North Ryde, New South Wales, Australia
| | - Zahra Ghorbanzadeh
- Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran (ABRII), Agricultural Research Education and Extension Organization (AREEO), Karaj, Iran
| | - Sara Esmaeili Tazangi
- Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran (ABRII), Agricultural Research Education and Extension Organization (AREEO), Karaj, Iran
| | - Ardeshir Amirkhani
- Australian Proteome Analysis Facility, Macquarie University, North Ryde, New South Wales, Australia
| | - Matthew J Fitzhenry
- Australian Proteome Analysis Facility, Macquarie University, North Ryde, New South Wales, Australia
| | - Mehrbano Kazemi
- Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran (ABRII), Agricultural Research Education and Extension Organization (AREEO), Karaj, Iran
| | - Mohammad Reza Ghaffari
- Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran (ABRII), Agricultural Research Education and Extension Organization (AREEO), Karaj, Iran
| | - Parisa Koobaz
- Department of Molecular Physiology, Agricultural Biotechnology Research Institute of Iran (ABRII), Agricultural Research Education and Extension Organization (AREEO), Karaj, Iran
| | - Mehrshad Zeinalabedini
- Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran (ABRII), Agricultural Research Education and Extension Organization (AREEO), Karaj, Iran
| | | | | | - Brian J Atwell
- School of Natural Sciences, Macquarie University, North Ryde, New South Wales, Australia
| | - Mehdi Mirzaei
- Australian Proteome Analysis Facility, Macquarie University, North Ryde, New South Wales, Australia.,School of Natural Sciences, Macquarie University, North Ryde, New South Wales, Australia
| | - Ghasem Hosseini Salekdeh
- Department of Systems Biology, Agricultural Biotechnology Research Institute of Iran (ABRII), Agricultural Research Education and Extension Organization (AREEO), Karaj, Iran.,School of Natural Sciences, Macquarie University, North Ryde, New South Wales, Australia
| | - Paul A Haynes
- School of Natural Sciences, Macquarie University, North Ryde, New South Wales, Australia
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Deng B, Weng B, Yan D, Xiao S, Fang H, Li M, Wang H. Construction of root tip density function and root water uptake characteristics in alpine meadows. Front Plant Sci 2022; 13:918397. [PMID: 36352864 PMCID: PMC9638077 DOI: 10.3389/fpls.2022.918397] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Accepted: 09/27/2022] [Indexed: 06/16/2023]
Abstract
Accurate calculation of root water uptake (RWU) is the key to improving vegetation water use efficiency and identifying water cycle evolution patterns, and root tips play an important role in RWU. However, most of the current RWU models in the alpine meadow are calculated based on the root length density (RLD) function. In this study, a large number of roots, soil hydraulic conductivity, and physicochemical property indices were obtained by continuous field prototype observation experiments for up to 2 years. It was found that the RLD and root tip density (RTD) in alpine meadows decrease by 16.2% and 14.6%, respectively, in the wilting stage compared to the regreening stage. The RTD distribution function of the alpine meadow was constructed, and the RWU model was established accordingly. The results show that the RTD function is more accurate than the RLD function to reflect the RWU pattern. Compared with RLD, the simulated RWU model constructed by using RTD as the root index that can effectively absorb water increased by 24.64% on average, and the simulated values were more consistent with the actual situation. It can be seen that there is an underestimation of RWU calculated based on the RLD function, which leads to an underestimation of the effect of climate warming on evapotranspiration. The simulation results of the RWU model based on RTD showed that the RWU rate in the regreening stage increased by 30.24% on average compared with that in the wilting stage. Meanwhile, the top 67% of the rhizosphere was responsible for 86.76% of the total RWU on average. This study contributes to the understanding of the alpine meadow water cycle system and provides theoretical support for the implementation of alpine meadow vegetation protection and restoration projects.
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Affiliation(s)
- Bin Deng
- State Key Laboratory of Simulation and Regulation of Water Cycle in River Basin, China Institute of Water Resources and Hydropower Research, Beijing, China
- Engineering Research Center of Eco-Environment in TGR Region, Ministry of Education, College of Hydraulic and Environmental Engineering, China Three Gorges University, Yichang, China
| | - Baisha Weng
- State Key Laboratory of Simulation and Regulation of Water Cycle in River Basin, China Institute of Water Resources and Hydropower Research, Beijing, China
- Yinshanbeilu National Field Research Station of Steppe Eco-Hydrological System, China Institute of Water Resources and Hydropower Research, Hohhot, China
| | - Denghua Yan
- State Key Laboratory of Simulation and Regulation of Water Cycle in River Basin, China Institute of Water Resources and Hydropower Research, Beijing, China
| | - Shangbin Xiao
- Engineering Research Center of Eco-Environment in TGR Region, Ministry of Education, College of Hydraulic and Environmental Engineering, China Three Gorges University, Yichang, China
| | - Haotian Fang
- Engineering Research Center of Eco-Environment in TGR Region, Ministry of Education, College of Hydraulic and Environmental Engineering, China Three Gorges University, Yichang, China
| | - Meng Li
- Department of Hydraulic Engineering, Tsinghua University, Beijing, China
| | - Hao Wang
- State Key Laboratory of Simulation and Regulation of Water Cycle in River Basin, China Institute of Water Resources and Hydropower Research, Beijing, China
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Beyer CP, Barrientos-Sanhueza C, Ponce E, Pedreschi R, Cuneo IF, Alvaro JE. Differential Hydraulic Properties and Primary Metabolism in Fine Root of Avocado Trees Rootstocks. Plants (Basel) 2022; 11:1059. [PMID: 35448786 PMCID: PMC9031253 DOI: 10.3390/plants11081059] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 03/17/2022] [Revised: 03/30/2022] [Accepted: 03/31/2022] [Indexed: 06/14/2023]
Abstract
Avocados (Persea americana Mill.) are one of the crops with the highest water footprints in Chile and the production is at risk due to severe and frequent droughts. The current production is mostly based on sexually (seed) propagated rootstocks, while clonally propagated rootstocks are on the rise. In a recent study, we found differences in aerial, root growth and water use efficiency between trees grown on these two different rootstocks under controlled continuous fertigation and environmental conditions. In this study, we further describe possible mechanisms which drive the differences. Avocado cv. "Hass" grafted on "Dusa" (D, clonally propagated) and "Mexicola" (M, sexually propagated) rootstocks and different root segments (3, 5 and 8 cm from root tip) were investigated using a combination of hydraulic measurements and polar metabolite (GC-MS) techniques. The results show significant differences in root hydraulic properties, indicating that "Mexicola" fine roots have higher water uptake capacity. The polar metabolites analysis revealed 13 compounds significantly different between rootstocks while nine were found significantly different among root segments. Principal component analysis (PCA) revealed differences between rootstocks and root segments. The data presented here highlight the importance of considering key physiological knowledge in avocado rootstocks breeding programs to be better prepared for future challenging environmental conditions.
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Tripathi P, Tayade R, Mun BG, Yun BW, Kim Y. Silicon Application Differentially Modulates Root Morphology and Expression of PIN and YUCCA Family Genes in Soybean ( Glycine max L.). Front Plant Sci 2022; 13:842832. [PMID: 35371163 PMCID: PMC8975267 DOI: 10.3389/fpls.2022.842832] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/24/2021] [Accepted: 02/18/2022] [Indexed: 06/14/2023]
Abstract
Silicon (Si) is absorbed and accumulated by some plant species; it has been shown to improve plant growth and performance. The beneficial role of Si in plants is based on the fundamental assumptions, and the biological function of Si is still being researched due to its complex nature, distinctiveness, and interaction. The present study included two distinct experiment sets: a screening test and an advanced test. In the initial examination, we used 21 soybean (Glycine max L.) cultivars. Following the evaluation, we chose four cultivars to investigate further. In particular, the positive response cultivars, Taeseon and Geomjeongsaeol, showed a 14% increase in net photosynthesis (P N ), and a 19-26% increase in transpiration in Si-treated plants when compared to the control plants. Si-treated Taeseon, Geomjeongsaeol, and Somyongkong, Mallikong cultivars showed significant differences in root morphological traits (RMTs) and root system architecture (RSA) when compared to the control plants. Taeseon and Geomjeongsaeol showed a 26 and 46% increase in total root length (TRL) after Si application, respectively, compared to the control, whereas Mallikong and Somyongkong showed 26 and 20% decrease in TRL after Si treatment, respectively, compared to the control. The Si application enhanced the overall RMTs and RSA traits in Taeseon and Geomjeongsaeol; however, the other two cultivars, Somyongkong and Mallikong, showed a decrease in such RMTs and RATs. Furthermore, to understand the underlying molecular mechanism and the response of various cultivars, we measured the Si content and analyzed the gene expression of genes involved in auxin transport and root formation and development. We showed that the Si content significantly increased in the Si-treated Somyongkong (28%) and Taeseon (30%) compared to the control cultivars. Overall, our results suggested that Si affects root development as well as the genes involved in the auxin synthesis, transport pathway, and modulates root growth leading to cultivar-dependent variation in soybeans.
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Abdirad S, Ghaffari MR, Majd A, Irian S, Soleymaniniya A, Daryani P, Koobaz P, Shobbar ZS, Farsad LK, Yazdanpanah P, Sadri A, Mirzaei M, Ghorbanzadeh Z, Kazemi M, Hadidi N, Haynes PA, Salekdeh GH. Genome-Wide Expression Analysis of Root Tips in Contrasting Rice Genotypes Revealed Novel Candidate Genes for Water Stress Adaptation. Front Plant Sci 2022; 13:792079. [PMID: 35265092 PMCID: PMC8899714 DOI: 10.3389/fpls.2022.792079] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/09/2021] [Accepted: 01/05/2022] [Indexed: 06/02/2023]
Abstract
Root system architecture (RSA) is an important agronomic trait with vital roles in plant productivity under water stress conditions. A deep and branched root system may help plants to avoid water stress by enabling them to acquire more water and nutrient resources. Nevertheless, our knowledge of the genetics and molecular control mechanisms of RSA is still relatively limited. In this study, we analyzed the transcriptome response of root tips to water stress in two well-known genotypes of rice: IR64, a high-yielding lowland genotype, which represents a drought-susceptible and shallow-rooting genotype; and Azucena, a traditional, upland, drought-tolerant and deep-rooting genotype. We collected samples from three zones (Z) of root tip: two consecutive 5 mm sections (Z1 and Z2) and the following next 10 mm section (Z3), which mainly includes meristematic and maturation regions. Our results showed that Z1 of Azucena was enriched for genes involved in cell cycle and division and root growth and development whereas in IR64 root, responses to oxidative stress were strongly enriched. While the expansion of the lateral root system was used as a strategy by both genotypes when facing water shortage, it was more pronounced in Azucena. Our results also suggested that by enhancing meristematic cell wall thickening for insulation purposes as a means of confronting stress, the sensitive IR64 genotype may have reduced its capacity for root elongation to extract water from deeper layers of the soil. Furthermore, several members of gene families such as NAC, AP2/ERF, AUX/IAA, EXPANSIN, WRKY, and MYB emerged as main players in RSA and drought adaptation. We also found that HSP and HSF gene families participated in oxidative stress inhibition in IR64 root tip. Meta-quantitative trait loci (QTL) analysis revealed that 288 differentially expressed genes were colocalized with RSA QTLs previously reported under drought and normal conditions. This finding warrants further research into their possible roles in drought adaptation. Overall, our analyses presented several major molecular differences between Azucena and IR64, which may partly explain their differential root growth responses to water stress. It appears that Azucena avoided water stress through enhancing growth and root exploration to access water, whereas IR64 might mainly rely on cell insulation to maintain water and antioxidant system to withstand stress. We identified a large number of novel RSA and drought associated candidate genes, which should encourage further exploration of their potential to enhance drought adaptation in rice.
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Affiliation(s)
- Somayeh Abdirad
- Department of Systems and Synthetic Biology, Agricultural Biotechnology Research Institute of Iran, Agricultural Research, Education and Extension Organization, Karaj, Iran
- Department of Plant Biology, Faculty of Biological Sciences, Kharazmi University, Tehran, Iran
| | - Mohammad Reza Ghaffari
- Department of Systems and Synthetic Biology, Agricultural Biotechnology Research Institute of Iran, Agricultural Research, Education and Extension Organization, Karaj, Iran
| | - Ahmad Majd
- Department of Plant Biology, Faculty of Biological Sciences, Kharazmi University, Tehran, Iran
| | - Saeed Irian
- Department of Cell and Molecular Biology, Faculty of Biological Sciences, Kharazmi University, Tehran, Iran
| | | | - Parisa Daryani
- Department of Systems and Synthetic Biology, Agricultural Biotechnology Research Institute of Iran, Agricultural Research, Education and Extension Organization, Karaj, Iran
| | - Parisa Koobaz
- Department of Molecular Physiology, Agricultural Biotechnology Research Institute of Iran, Agricultural Research, Education and Extension Organization, Karaj, Iran
| | - Zahra-Sadat Shobbar
- Department of Systems and Synthetic Biology, Agricultural Biotechnology Research Institute of Iran, Agricultural Research, Education and Extension Organization, Karaj, Iran
| | - Laleh Karimi Farsad
- Department of Systems and Synthetic Biology, Agricultural Biotechnology Research Institute of Iran, Agricultural Research, Education and Extension Organization, Karaj, Iran
| | - Parisa Yazdanpanah
- Department of Systems and Synthetic Biology, Agricultural Biotechnology Research Institute of Iran, Agricultural Research, Education and Extension Organization, Karaj, Iran
- Department of Plant Biology, Faculty of Biological Sciences, Kharazmi University, Tehran, Iran
| | - Amirhossein Sadri
- Department of Systems and Synthetic Biology, Agricultural Biotechnology Research Institute of Iran, Agricultural Research, Education and Extension Organization, Karaj, Iran
| | - Mehdi Mirzaei
- Faculty of Medicine, Health and Human Sciences, Macquarie University, Sydney, NSW, Australia
| | - Zahra Ghorbanzadeh
- Department of Systems and Synthetic Biology, Agricultural Biotechnology Research Institute of Iran, Agricultural Research, Education and Extension Organization, Karaj, Iran
| | - Mehrbano Kazemi
- Department of Systems and Synthetic Biology, Agricultural Biotechnology Research Institute of Iran, Agricultural Research, Education and Extension Organization, Karaj, Iran
| | - Naghmeh Hadidi
- Department of Clinical Research and Electronic Microscope, Pasteur Institute of Iran, Tehran, Iran
| | - Paul A. Haynes
- Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia
| | - Ghasem Hosseini Salekdeh
- Department of Systems and Synthetic Biology, Agricultural Biotechnology Research Institute of Iran, Agricultural Research, Education and Extension Organization, Karaj, Iran
- Department of Molecular Sciences, Macquarie University, Sydney, NSW, Australia
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11
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Sato M, Akashi H, Sakamoto Y, Matsunaga S, Tsuji H. Whole-Tissue Three-Dimensional Imaging of Rice at Single-Cell Resolution. Int J Mol Sci 2021; 23:40. [PMID: 35008463 PMCID: PMC8744978 DOI: 10.3390/ijms23010040] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/28/2021] [Revised: 11/23/2021] [Accepted: 11/30/2021] [Indexed: 12/23/2022] Open
Abstract
The three-dimensional (3D) arrangement of cells in tissues provides an anatomical basis for analyzing physiological and biochemical aspects of plant and animal cellular development and function. In this study, we established a protocol for tissue clearing and 3D imaging in rice. Our protocol is based on three improvements: clearing with iTOMEI (clearing solution suitable for plants), developing microscopic conditions in which the Z step is optimized for 3D reconstruction, and optimizing cell-wall staining. Our protocol successfully 3D imaged rice shoot apical meristems, florets, and root apical meristems at cellular resolution throughout whole tissues. Using fluorescent reporters of auxin signaling in rice root tips, we also revealed the 3D distribution of auxin signaling events that are activated in the columella, quiescent center, and multiple rows of cells in the stele of the root apical meristem. Examination of cells with higher levels of auxin signaling revealed that only the central row of cells was connected to the quiescent center. Our method provides opportunities to observe the 3D arrangement of cells in rice tissues.
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Grants
- 19J21998 Japan Society for the Promotion of Science
- 16H06464 Ministry of Education, Culture, Sports, Science and Technology
- 16H06466 Ministry of Education, Culture, Sports, Science and Technology
- 16H02532 Ministry of Education, Culture, Sports, Science and Technology
- JPMJCR16O4 Japan Science and Technology Agency
- 21H04728 Ministry of Education, Culture, Sports, Science and Technology
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Affiliation(s)
- Moeko Sato
- Kihara Institute for Biological Research, Yokohama City University, Maioka 641-12, Totsuka, Yokohama 244-0813, Kanagawa, Japan; (M.S.); (H.A.)
| | - Hiroko Akashi
- Kihara Institute for Biological Research, Yokohama City University, Maioka 641-12, Totsuka, Yokohama 244-0813, Kanagawa, Japan; (M.S.); (H.A.)
| | - Yuki Sakamoto
- Imaging Frontier Center, Organization for Research Advancement, Tokyo University of Science, 2641 Yamazaki, Noda 278-8510, Chiba, Japan; (Y.S.); (S.M.)
- Department of Biological Sciences, Graduate School of Science, Osaka University, Machikaneyama-cho 1-1, Toyonaka 560-0043, Osaka, Japan
| | - Sachihiro Matsunaga
- Imaging Frontier Center, Organization for Research Advancement, Tokyo University of Science, 2641 Yamazaki, Noda 278-8510, Chiba, Japan; (Y.S.); (S.M.)
- Department of Applied Biological Science, Faculty of Science and Technology, Tokyo University of Science, 2641 Yamazaki, Noda 278-8510, Chiba, Japan
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa 277-8562, Chiba, Japan
| | - Hiroyuki Tsuji
- Kihara Institute for Biological Research, Yokohama City University, Maioka 641-12, Totsuka, Yokohama 244-0813, Kanagawa, Japan; (M.S.); (H.A.)
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12
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Graças JP, Ranocha P, Vitorello VA, Savelli B, Jamet E, Dunand C, Burlat V. The Class III Peroxidase Encoding Gene AtPrx62 Positively and Spatiotemporally Regulates the Low pH-Induced Cell Death in Arabidopsis thaliana Roots. Int J Mol Sci 2020; 21:ijms21197191. [PMID: 33003393 PMCID: PMC7582640 DOI: 10.3390/ijms21197191] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/06/2020] [Revised: 09/23/2020] [Accepted: 09/25/2020] [Indexed: 12/15/2022] Open
Abstract
Exogenous low pH stress causes cell death in root cells, limiting root development, and agricultural production. Different lines of evidence suggested a relationship with cell wall (CW) remodeling players. We investigated whether class III peroxidase (CIII Prx) total activity, CIII Prx candidate gene expression, and reactive oxygen species (ROS) could modify CW structure during low pH-induced cell death in Arabidopsis thaliana roots. Wild-type roots displayed a good spatio-temporal correlation between the low pH-induced cell death and total CIII Prx activity in the early elongation (EZs), transition (TZs), and meristematic (MZs) zones. In situ mRNA hybridization showed that AtPrx62 transcripts accumulated only in roots treated at pH 4.6 in the same zones where cell death was induced. Furthermore, roots of the atprx62-1 knockout mutant showed decreased cell mortality under low pH compared to wild-type roots. Among the ROS, there was a drastic decrease in O2●− levels in the MZs of wild-type and atprx62-1 roots upon low pH stress. Together, our data demonstrate that AtPrx62 expression is induced by low pH and that the produced protein could positively regulate cell death. Whether the decrease in O2●− level is related to cell death induced upon low pH treatment remains to be elucidated.
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Affiliation(s)
- Jonathas Pereira Graças
- Escola Superior de Agricultura "Luiz de Queiroz", University of São Paulo, 13418-900 São Paulo, Brazil
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, 31320 Auzeville-Tolosane, France
| | - Philippe Ranocha
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, 31320 Auzeville-Tolosane, France
| | | | - Bruno Savelli
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, 31320 Auzeville-Tolosane, France
| | - Elisabeth Jamet
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, 31320 Auzeville-Tolosane, France
| | - Christophe Dunand
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, 31320 Auzeville-Tolosane, France
| | - Vincent Burlat
- Laboratoire de Recherche en Sciences Végétales, Université de Toulouse, CNRS, UPS, 24 chemin de Borde Rouge, 31320 Auzeville-Tolosane, France
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13
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Li JW, Zhang SB, Xi HP, Bradshaw CJA, Zhang JL. Processes controlling programmed cell death of root velamen radicum in an epiphytic orchid. Ann Bot 2020; 126:261-275. [PMID: 32318689 PMCID: PMC7380463 DOI: 10.1093/aob/mcaa077] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/15/2019] [Accepted: 04/18/2020] [Indexed: 05/06/2023]
Abstract
BACKGROUND AND AIMS Development of the velamen radicum on the outer surface of the root epidermis is an important characteristic for water uptake and retention in some plant families, particularly epiphytic orchids, for survival under water-limited environments. Velamen radicum cells derive from the primary root meristem; however, following this development, velamen radicum cells die by incompletely understood processes of programmed cell death (PCD). METHODS We combined the use of transmission electron microscopy, X-ray micro-tomography and transcriptome methods to characterize the major anatomical and molecular changes that occur during the development and death of velamen radicum cells of Cymbidium tracyanum, a typical epiphytic orchid, to determine how PCD occurs. KEY RESULTS Typical changes of PCD in anatomy and gene expression were observed in the development of velamen radicum cells. During the initiation of PCD, we found that both cell and vacuole size increased, and several genes involved in brassinosteroid and ethylene pathways were upregulated. In the stage of secondary cell wall formation, significant anatomical changes included DNA degradation, cytoplasm thinning, organelle decrease, vacuole rupture and cell wall thickening. Changes were found in the expression of genes related to the biosynthesis of cellulose and lignin, which are instrumental in the formation of secondary cell walls, and are regulated by cytoskeleton-related factors and phenylalanine ammonia-lyase. In the final stage of PCD, cell autolysis was terminated from the outside to the inside of the velamen radicum. The regulation of genes related to autophagy, vacuolar processing enzyme, cysteine proteases and metacaspase was involved in the final execution of cell death and autolysis. CONCLUSIONS Our results showed that the development of the root velamen radicum in an epiphytic orchid was controlled by the process of PCD, which included initiation of PCD, followed by formation of the secondary cell wall, and execution of autolysis following cell death.
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Affiliation(s)
- Jia-Wei Li
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan, China
- Center of Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Mengla, Yunnan, China
| | - Shi-Bao Zhang
- Key Laboratory for Economic Plants and Biotechnology, Kunming Institute of Botany, Chinese Academy of Sciences, Kunming, Yunnan, China
- For correspondence. E-mail or
| | - Hui-Peng Xi
- Horticulture Department, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan, China
| | - Corey J A Bradshaw
- Global Ecology, College of Science and Engineering, Flinders University, GPO Box 2100, Adelaide, South Australia, Australia
| | - Jiao-Lin Zhang
- CAS Key Laboratory of Tropical Forest Ecology, Xishuangbanna Tropical Botanical Garden, Chinese Academy of Sciences, Mengla, Yunnan, China
- Center of Plant Ecology, Core Botanical Gardens, Chinese Academy of Sciences, Mengla, Yunnan, China
- For correspondence. E-mail or
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14
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Goswami R, Asnacios A, Milani P, Graindorge S, Houlné G, Mutterer J, Hamant O, Chabouté ME. Mechanical Shielding in Plant Nuclei. Curr Biol 2020; 30:2013-2025.e3. [PMID: 32330420 DOI: 10.1016/j.cub.2020.03.059] [Citation(s) in RCA: 16] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/09/2019] [Revised: 02/05/2020] [Accepted: 03/23/2020] [Indexed: 01/14/2023]
Abstract
In animal single cells in culture, nuclear geometry and stiffness can be affected by mechanical cues, with important consequences for chromatin status and gene expression. This calls for additional investigation into the corresponding physiological relevance in a multicellular context and in different mechanical environments. Using the Arabidopsis root as a model system, and combining morphometry and micro-rheometry, we found that hyperosmotic stress decreases nuclear circularity and size and increases nuclear stiffness in meristematic cells. These changes were accompanied by enhanced expression of touch response genes. The nuclear response to hyperosmotic stress was rescued upon return to iso-osmotic conditions and could even lead to opposite trends upon hypo-osmotic stress. Interestingly, nuclei in a mutant impaired in the functions of the gamma-tubulin complex protein 3 (GCP3) interacting protein (GIP)/MZT1 proteins at the nuclear envelope were almost insensitive to such osmotic changes. The gip1gip2 mutant exhibited constitutive hyperosmotic stress response with stiffer and deformed nuclei, as well as touch response gene induction. The mutant was also resistant to lethal hyperosmotic conditions. Altogether, we unravel a stereotypical geometric, mechanical, and genetic nuclear response to hyperosmotic stress in plants. Our data also suggest that chromatin acts as a gel that stiffens in hyperosmotic conditions and that the nuclear-envelope-associated protein GIPs act as negative regulators of this response.
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Affiliation(s)
- Rituparna Goswami
- Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg 67084, France; Laboratoire de Reproduction et Développement des Plantes, Université de Lyon, UCB Lyon 1, ENS de Lyon, INRAE, CNRS, Lyon 69364, France
| | - Atef Asnacios
- Laboratoire Matière et Systèmes Complexes, Université de Paris, CNRS, Université Paris-Diderot, Paris 75013, France
| | | | - Stéfanie Graindorge
- Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg 67084, France
| | - Guy Houlné
- Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg 67084, France
| | - Jérôme Mutterer
- Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg 67084, France
| | - Olivier Hamant
- Laboratoire de Reproduction et Développement des Plantes, Université de Lyon, UCB Lyon 1, ENS de Lyon, INRAE, CNRS, Lyon 69364, France.
| | - Marie-Edith Chabouté
- Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg 67084, France.
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15
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Gerlitz N, Gerum R, Sauer N, Stadler R. Photoinducible DRONPA-s: a new tool for investigating cell-cell connectivity. Plant J 2018; 94:751-766. [PMID: 29654648 DOI: 10.1111/tpj.13918] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/22/2017] [Revised: 03/02/2018] [Accepted: 03/26/2018] [Indexed: 06/08/2023]
Abstract
The development of multicellular plants relies on the ability of their cells to exchange solutes, proteins and signalling compounds through plasmodesmata, symplasmic pores in the plant cell wall. The aperture of plasmodesmata is regulated in response to developmental cues or external factors such as pathogen attack. This regulation enables tight control of symplasmic cell-to-cell transport. Here we report on an elegant non-invasive method to quantify the passive movement of protein between selected cells even in deeper tissue layers. The system is based on the fluorescent protein DRONPA-s, which can be switched on and off repeatedly by illumination with different light qualities. Using transgenic 35S::DRONPA-s Arabidopsis thaliana and a confocal microscope it was possible to activate DRONPA-s fluorescence in selected cells of the root meristem. This enabled us to compare movement of DRONPA-s from the activated cells into the respective neighbouring cells. Our analyses showed that pericycle cells display the highest efflux capacity with a good lateral connectivity. In contrast, root cap cells showed the lowest efflux of DRONPA-s. Plasmodesmata of quiescent centre cells mediated a stronger efflux into columella cells than into stele initials. To simplify measurements of fluorescence intensity in a complex tissue we developed software that allows simultaneous analyses of fluorescence intensities of several neighbouring cells. Our DRONPA-s system generates reproducible data and is a valuable tool for studying symplasmic connectivity.
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Affiliation(s)
- Nadja Gerlitz
- Molecular Plant Physiology, University of Erlangen, Staudtstrasse 5, Erlangen, 91058, Germany
| | - Richard Gerum
- Biophysics, University of Erlangen, Henkestrasse 91, Erlangen, 91052, Germany
| | - Norbert Sauer
- Molecular Plant Physiology, University of Erlangen, Staudtstrasse 5, Erlangen, 91058, Germany
| | - Ruth Stadler
- Molecular Plant Physiology, University of Erlangen, Staudtstrasse 5, Erlangen, 91058, Germany
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16
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Nino-Barrera JL, Ardila E, Guaman-Pacheco F, Gamboa-Martinez L, Alzate-Mendoza D. Assessment of the relationship between the maxillary sinus floor and the upper posterior root tips: Clinical considerations. ACTA ACUST UNITED AC 2017; 9:e12307. [PMID: 29178271 DOI: 10.1111/jicd.12307] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/27/2017] [Accepted: 09/11/2017] [Indexed: 11/28/2022]
Abstract
AIM The purpose of the present study was to evaluate the relationship between the maxillary sinus floor and the upper posterior root tips in the Colombian population using cone-beam computed tomography. METHODS A total of 1656 roots were analyzed (1104 molars and 552 premolars), classified as types I (outside the maxillary sinus) and II (inside the maxillary sinus). RESULTS The results showed that the palatal root of the maxillary first molar was most frequently found inside the antrum. CONCLUSIONS Understanding the relationship between the maxillary sinus floor and the upper posterior root tips is important to the clinician when performing conventional or surgical endodontic treatment and conventional surgery procedures in order to minimize or avoid the risk of damaging the maxillary sinus.
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Affiliation(s)
- Javier Laureano Nino-Barrera
- Department of Endodontics, Universidad El Bosque, School of Dentistry, Bogota, Colombia.,Department of Basic Sciences and Oral Medicine, Universidad Nacional de Colombia School of Dentistry, Bogota, Colombia
| | - Edith Ardila
- Department of Endodontics, Universidad El Bosque, School of Dentistry, Bogota, Colombia
| | | | - Luis Gamboa-Martinez
- Department of Endodontics, Universidad El Bosque, School of Dentistry, Bogota, Colombia
| | - Diana Alzate-Mendoza
- Department of Endodontics, Universidad El Bosque, School of Dentistry, Bogota, Colombia
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17
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Abstract
Roots respond to changes in environmental nitrate with a localized stimulation of ABA levels in the root tip. This rise in ABA levels is due to the action of ER-localized β-GLUCOSIDASE 1, which releases bioactive ABA from the inactive ABA-glucose ester. The slow rise in root tip ABA levels stimulates expression of nitrate metabolic enzymes and simultaneously activates a negative feedback loop involving the protein phosphatase, ABI2, which reduces nitrate influx via the AtNPF6.3 transceptor. The rise in root-tip localized ABA also negatively regulates expression of the SCARECROW transcription factor, thus providing a sensitive mechanism for modulating root growth in response to environmental changes.
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Affiliation(s)
- Jeanne M. Harris
- Department of Plant Biology, University of Vermont, Burlington, VT, USA
- CONTACT Jeanne M. Harris Department of Plant Biology, University of Vermont, Jeffords Hall, 63 Carrigan Drive, Burlington, VT, 05405, USA
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18
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Lv W, Yang L, Xu C, Shi Z, Shao J, Xian M, Chen J. Cadmium Disrupts the Balance between Hydrogen Peroxide and Superoxide Radical by Regulating Endogenous Hydrogen Sulfide in the Root Tip of Brassica rapa. Front Plant Sci 2017; 8:232. [PMID: 28270829 PMCID: PMC5318417 DOI: 10.3389/fpls.2017.00232] [Citation(s) in RCA: 8] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/30/2016] [Accepted: 02/07/2017] [Indexed: 05/04/2023]
Abstract
Cd (cadmium) stress always alters the homeostasis of ROS (reactive oxygen species) including H2O2 (hydrogen sulfide) and [Formula: see text] (superoxide radical), leading to the oxidative injury and growth inhibition in plants. In addition to triggering oxidative injury, ROS has been suggested as important regulators modulating root elongation. However, whether and how Cd stress induces the inhibition of root elongation by differentially regulating endogenous H2O2 and [Formula: see text], rather than by inducing oxidative injury, remains elusive. To address these gaps, histochemical, physiological, and biochemical approaches were applied to investigate the mechanism for Cd to fine-tune the balance between H2O2 and [Formula: see text] in the root tip of Brassica rapa. Treatment with Cd at 4 and 16 μM significantly inhibited root elongation, while only 16 μM but not 4 μM of Cd induced oxidative injury and cell death in root tip. Fluorescent and pharmaceutical tests suggested that H2O2 and [Formula: see text] played negative and positive roles, respectively, in the regulation of root elongation in the presence of Cd (4 μM) or not. Treatment with Cd at 4 μM led to the increase in H2O2 and the decrease in [Formula: see text] in root tip, which may be attributed to the up-regulation of Br_UPB1s and the down-regulation of their predicted targets (four peroxidase genes). Cd at 4 μM resulted in the increase in endogenous H2S in root tip by inducing the up-regulation of LCDs and DCDs. Treatment with H2S biosynthesis inhibitor or H2S scavenger significantly blocked Cd (4 μM)-induced increase in endogenous H2S level, coinciding with the recovery of root elongation, the altered balance between H2O2 and [Formula: see text], and the expression of Br_UPB1s and two peroxidase genes. Taken together, it can be proposed that endogenous H2S mediated the phytotoxicity of Cd at low concentration by regulating Br_UPB1s-modulated balance between H2O2 and [Formula: see text] in root tip. Such findings shed new light on the regulatory role of endogenous H2S in plant adaptions to Cd stress.
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Affiliation(s)
- Wenjing Lv
- Institute of Food Quality and Safety, Jiangsu Academy of Agricultural SciencesNanjing, China
- College of Horticulture, Nanjing Agricultural UniversityNanjing, China
- Key Lab of Food Quality and Safety of Jiangsu Province – State Key Laboratory Breeding Base, Jiangsu Provincial Department of Agriculture and ForestryNanjing, China
| | - Lifei Yang
- College of Horticulture, Nanjing Agricultural UniversityNanjing, China
| | - Cunfa Xu
- Central Laboratory, Jiangsu Academy of Agricultural ScienceNanjing, China
| | - Zhiqi Shi
- Institute of Food Quality and Safety, Jiangsu Academy of Agricultural SciencesNanjing, China
- Key Lab of Food Quality and Safety of Jiangsu Province – State Key Laboratory Breeding Base, Jiangsu Provincial Department of Agriculture and ForestryNanjing, China
| | - Jinsong Shao
- Agricultural Products Quality and Safety Superivision, Inspection, and Testing Center, Ministry of AgricultureNanjing, China
| | - Ming Xian
- Department of Chemistry, Washington State University, PullmanWA, USA
| | - Jian Chen
- Institute of Food Quality and Safety, Jiangsu Academy of Agricultural SciencesNanjing, China
- Key Lab of Food Quality and Safety of Jiangsu Province – State Key Laboratory Breeding Base, Jiangsu Provincial Department of Agriculture and ForestryNanjing, China
- *Correspondence: Jian Chen,
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19
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Abstract
Soybean is a widely cultivated crop; however, it is sensitive to flooding and drought stresses. The adverse environmental cues cause the endoplasmic reticulum (ER) stress due to accumulation of unfolded or misfolded proteins. To investigate the mechanisms in response to flooding and drought stresses, ER proteomics was performed in soybean root tips. The enzyme activity of NADH cytochrome c reductase was two-fold higher in the ER than other fractions, indicating that the ER was isolated with high purity. Protein abundance of ribosomal proteins was decreased under both stresses compared to control condition; however, the percentage of increased ribosomes was two-fold higher in flooding compared to drought. The ER proteins related to protein glycosylation and signaling were in response to both stresses. Compared to control condition, calnexin was decreased under both stresses; however, protein disulfide isomerase-like proteins and heat shock proteins were markedly decreased under flooding and drought conditions, respectively. Furthermore, fewer glycoproteins and higher levels of cytosolic calcium were identified under both stresses compared to control condition. These results suggest that reduced accumulation of glycoproteins in response to both stresses might be due to dysfunction of protein folding through calnexin/calreticulin cycle. Additionally, the increased cytosolic calcium levels induced by flooding and drought stresses might disturb the ER environment for proper protein folding in soybean root tips.
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Affiliation(s)
- Xin Wang
- Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan
- National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan
| | - Setsuko Komatsu
- Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan
- National Institute of Crop Science, National Agriculture and Food Research Organization , Tsukuba 305-8518, Japan
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20
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Zhang M, Ma Y, Horst WJ, Yang ZB. Spatial-temporal analysis of polyethylene glycol-reduced aluminium accumulation and xyloglucan endotransglucosylase action in root tips of common bean (Phaseolus vulgaris). Ann Bot 2016; 118:1-9. [PMID: 27106549 PMCID: PMC4934392 DOI: 10.1093/aob/mcw062] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/21/2015] [Revised: 01/28/2015] [Accepted: 02/24/2016] [Indexed: 05/25/2023]
Abstract
BACKGROUND AND AIMS Aluminium (Al) toxicity and drought are two major limiting factors for common bean (Phaseolus vulgaris) production on tropical acid soils. Polyethylene glycol (PEG 6000)-induced osmotic stress (OS) simulating drought stress reduces Al accumulation in the entire root tips of common bean by alteration of cell-wall (CW) porosity, which might be regulated by two genes encoding xyloglucan endotransglucosylase/hydrolase, PvXTH9 and PvXTHb The aim of this research was to understand the spatial and temporal regulation of both XTH genes in PEG-mediated Al accumulation in the root tips. METHODS In this study the spatial and temporal expression patterns of Al-inhibited root elongation, Al accumulation, XTH gene expression and xyloglucan endotransglucosylase (XET) enzyme action in the root tips were analysed under PEG-induced OS by a combination of physiological and molecular approaches such as quantitative reverse transcription-polymerase chain reaction (qRT-PCR) and in situ fluorescence detection of XET in root tips. KEY RESULTS The results showed that Al accumulation, expression of XTH genes and XET action were distinctly reduced in the apical 0-2, 2-7 and 7-12 mm zones under OS, implying a potential regulatory role of XTH genes and XET enzyme in CW Al accumulation in these zones. CONCLUSIONS The results provide novel insights into the physiological and molecular mechanisms of CW structure modification as a response of plant roots to OS, which will contribute to mitigate Al and drought stresses, severely limiting crop yields on acid soils.
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Affiliation(s)
- Maolin Zhang
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Science, Shandong University, Jinan 250100, People's Republic of China
| | - Yanqi Ma
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Science, Shandong University, Jinan 250100, People's Republic of China
| | - Walter J Horst
- Institute of Plant Nutrition, Leibniz Universität Hannover, Herrenhaeuser Str. 2, 30419 Hannover, Germany
| | - Zhong-Bao Yang
- The Key Laboratory of Plant Cell Engineering and Germplasm Innovation, Ministry of Education, School of Life Science, Shandong University, Jinan 250100, People's Republic of China
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21
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Abstract
Flooding has severe negative effects on soybean growth. To explore the flooding-responsive mechanisms in early-stage soybean, a phosphoproteomic approach was used. Two-day-old soybean plants were treated without or with flooding for 3, 6, 12, and 24 h, and root tip proteins were then extracted and analyzed at each time point. After 3 h of flooding exposure, the fresh weight of soybeans increased, whereas the ATP content of soybean root tips decreased. Using a gel-free proteomic technique, a total of 114 phosphoproteins were identified in the root tip samples, and 34 of the phosphoproteins were significantly changed with respect to phosphorylation status after 3 h of flooding stress. Among these phosphoproteins, eukaryotic translation initiation factors were dephosphorylated, whereas several protein synthesis-related proteins were phosphorylated. The mRNA expression levels of sucrose phosphate synthase 1F and eukaryotic translation initiation factor 4 G were down-regulated, whereas UDP-glucose 6-dehydrogenase mRNA expression was up-regulated during growth but down-regulated under flooding stress. Furthermore, bioinformatic protein interaction analysis of flooding-responsive proteins based on temporal phosphorylation patterns indicated that eukaryotic translation initiation factor 4 G was located in the center of the network during flooding. Soybean eukaryotic translation initiation factor 4 G has homology to programmed cell death 4 protein and is implicated in ethylene signaling. The weight of soybeans was increased with treatment by an ethylene-releasing agent under flooding condition, but it was decreased when plants were exposed to an ethylene receptor antagonist. These results suggest that the ethylene signaling pathway plays an important role, via the protein phosphorylation, in mechanisms of plant tolerance to the initial stages of flooding stress in soybean root tips.
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Affiliation(s)
- Xiaojian Yin
- Graduate School of Life and Environmental Sciences, University of Tsukuba , Tsukuba 305-8572, Japan
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Taylor BN, Strand AE, Cooper ER, Beidler KV, Schönholz M, Pritchard SG. Root length, biomass, tissue chemistry and mycorrhizal colonization following 14 years of CO2 enrichment and 6 years of N fertilization in a warm temperate forest. Tree Physiol 2014; 34:955-965. [PMID: 25056092 DOI: 10.1093/treephys/tpu058] [Citation(s) in RCA: 11] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/03/2023]
Abstract
Root systems serve important roles in carbon (C) storage and resource acquisition required for the increased photosynthesis expected in CO2-enriched atmospheres. For these reasons, understanding the changes in size, distribution and tissue chemistry of roots is central to predicting the ability of forests to capture anthropogenic CO2. We sampled 8000 cm(3) soil monoliths in a pine forest exposed to 14 years of free-air-CO2-enrichment and 6 years of nitrogen (N) fertilization to determine changes in root length, biomass, tissue C : N and mycorrhizal colonization. CO2 fumigation led to greater root length (98%) in unfertilized plots, but root biomass increases under elevated CO2 were only found for roots <1 mm in diameter in unfertilized plots (59%). Neither fine root [C] nor [N] was significantly affected by increased CO2. There was significantly less root biomass in N-fertilized plots (19%), but fine root [N] and [C] both increased under N fertilization (29 and 2%, respectively). Mycorrhizal root tip biomass responded positively to CO2 fumigation in unfertilized plots, but was unaffected by CO2 under N fertilization. Changes in fine root [N] and [C] call for further study of the effects of N fertilization on fine root function. Here, we show that the stimulation of pine roots by elevated CO2 persisted after 14 years of fumigation, and that trees did not rely exclusively on increased mycorrhizal associations to acquire greater amounts of required N in CO2-enriched plots. Stimulation of root systems by CO2 enrichment was seen primarily for fine root length rather than biomass. This observation indicates that studies measuring only biomass might overlook shifts in root systems that better reflect treatment effects on the potential for soil resource uptake. These results suggest an increase in fine root exploration as a primary means for acquiring additional soil resources under elevated CO2.
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Affiliation(s)
- Benton N Taylor
- Department of Biology, College of Charleston, 58 Coming St., Charleston, SC 29424, USA
| | - Allan E Strand
- Department of Biology, College of Charleston, 58 Coming St., Charleston, SC 29424, USA
| | - Emily R Cooper
- Department of Biology, College of Charleston, 58 Coming St., Charleston, SC 29424, USA
| | - Katilyn V Beidler
- Department of Biology, College of Charleston, 58 Coming St., Charleston, SC 29424, USA
| | - Marcos Schönholz
- Department of Biology, College of Charleston, 58 Coming St., Charleston, SC 29424, USA
| | - Seth G Pritchard
- Department of Biology, College of Charleston, 58 Coming St., Charleston, SC 29424, USA
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Ji H, Liu L, Li K, Xie Q, Wang Z, Zhao X, Li X. PEG-mediated osmotic stress induces premature differentiation of the root apical meristem and outgrowth of lateral roots in wheat. J Exp Bot 2014; 65:4863-72. [PMID: 24935621 PMCID: PMC4144773 DOI: 10.1093/jxb/eru255] [Citation(s) in RCA: 31] [Impact Index Per Article: 3.1] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/19/2023]
Abstract
Water stress is one of the major environmental stresses causing growth retardation and yield loss of plants. In the past decades, osmotic adjustment, antioxidant protection, and stomatal movement have been extensively studied, but much less attention has been paid to the study of root system reprogramming to maximize water absorption and survival under water stress. Here, it is shown that polyethylene glycol (PEG)-simulated mild and moderate osmotic stress induced premature differentiation of the root apical meristem (RAM). It is demonstrated that RAM premature differentiation is a conserved adaptive mechanism that is widely adopted by various plants to cope with osmotic stress simulated by PEG 8000, and the occurrence of RAM premature differentiation is directly related to stress tolerance of plants. It is shown that the osmotic stress-induced premature differentiation caused growth cessation of primary roots allowing outgrowth of lateral roots. This work has uncovered a key mechanism for controlling the plastic development of the root system by which plants are capable of survival, growth, or reproduction under water stress.
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Affiliation(s)
- Hongtao Ji
- The State Key Laboratory of Plant Cell & Chromosome Engineering, Center for Agricultural Research Resources, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang, Hebei 050021, China
| | - Ling Liu
- The State Key Laboratory of Plant Cell & Chromosome Engineering, Center for Agricultural Research Resources, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang, Hebei 050021, China
| | - Kexue Li
- The State Key Laboratory of Plant Cell & Chromosome Engineering, Center for Agricultural Research Resources, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang, Hebei 050021, China
| | - Qingen Xie
- The State Key Laboratory of Plant Cell & Chromosome Engineering, Center for Agricultural Research Resources, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang, Hebei 050021, China
| | - Zhijuan Wang
- The State Key Laboratory of Plant Cell & Chromosome Engineering, Center for Agricultural Research Resources, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang, Hebei 050021, China
| | - Xuhua Zhao
- The State Key Laboratory of Plant Cell & Chromosome Engineering, Center for Agricultural Research Resources, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang, Hebei 050021, China
| | - Xia Li
- The State Key Laboratory of Plant Cell & Chromosome Engineering, Center for Agricultural Research Resources, Institute of Genetics and Developmental Biology, Chinese Academy of Sciences, 286 Huaizhong Road, Shijiazhuang, Hebei 050021, China
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Pinosa F, Begheldo M, Pasternak T, Zermiani M, Paponov IA, Dovzhenko A, Barcaccia G, Ruperti B, Palme K. The Arabidopsis thaliana Mob1A gene is required for organ growth and correct tissue patterning of the root tip. Ann Bot 2013; 112:1803-14. [PMID: 24201137 PMCID: PMC3838559 DOI: 10.1093/aob/mct235] [Citation(s) in RCA: 16] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/20/2013] [Revised: 07/22/2013] [Accepted: 08/20/2013] [Indexed: 05/24/2023]
Abstract
BACKGROUND AND AIMS The Mob1 family includes a group of kinase regulators conserved throughout eukaryotes. In multicellular organisms, Mob1 is involved in cell proliferation and apoptosis, thus controlling appropriate cell number and organ size. These functions are also of great importance for plants, which employ co-ordinated growth processes to explore the surrounding environment and respond to changing external conditions. Therefore, this study set out to investigate the role of two Arabidopsis thaliana Mob1-like genes, namely Mob1A and Mob1B, in plant development. METHODS A detailed spatio-temporal analysis of Mob1A and Mob1B gene expression was performed by means of bioinformatic tools, the generation of expression reporter lines and in situ hybridization of gene-specific probes. To explore the function of the two genes in plant development, knock-out and knock-down mutants were isolated and their phenotype quantitatively characterized. KEY RESULTS Transcripts of the two genes were detected in specific sets of cells in all plant organs. Mob1A was upregulated by several stress conditions as well as by abscisic acid and salicylic acid. A knock-out mutation in Mob1B did not cause any visible defect in plant development, whereas suppression of Mob1A expression affected organ growth and reproduction. In the primary root, reduced levels of Mob1A expression brought about severe defects in tissue patterning of the stem cell niche and columella and led to a decrease in meristem size. Moreover, loss of Mob1A function resulted in a higher sensitivity of root growth to abscisic acid. CONCLUSIONS Taken together, the results indicate that arabidopsis Mob1A is involved in the co-ordination of tissue patterning and organ growth, similarly to its orthologues in other multicellular eukaryotes. In addition, Mob1A serves a plant-specific function by contributing to growth adjustments in response to stress conditions.
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Affiliation(s)
- Francesco Pinosa
- Institute of Biology II/Molecular Plant Physiology, Faculty of Biology, Albert-Ludwigs-University of Freiburg, Schänzlestrasse 1, D-79104 Freiburg, Germany
| | - Maura Begheldo
- Department of Agriculture, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, Agripolis, viale dell'Università, 16, 35020 Legnaro (PD), Italy
| | - Taras Pasternak
- Institute of Biology II/Molecular Plant Physiology, Faculty of Biology, Albert-Ludwigs-University of Freiburg, Schänzlestrasse 1, D-79104 Freiburg, Germany
| | - Monica Zermiani
- Department of Agriculture, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, Agripolis, viale dell'Università, 16, 35020 Legnaro (PD), Italy
| | - Ivan A. Paponov
- Institute of Biology II/Molecular Plant Physiology, Faculty of Biology, Albert-Ludwigs-University of Freiburg, Schänzlestrasse 1, D-79104 Freiburg, Germany
| | - Alexander Dovzhenko
- Institute of Biology II/Molecular Plant Physiology, Faculty of Biology, Albert-Ludwigs-University of Freiburg, Schänzlestrasse 1, D-79104 Freiburg, Germany
| | - Gianni Barcaccia
- Department of Agriculture, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, Agripolis, viale dell'Università, 16, 35020 Legnaro (PD), Italy
| | - Benedetto Ruperti
- Department of Agriculture, Food, Natural resources, Animals and Environment (DAFNAE), University of Padova, Agripolis, viale dell'Università, 16, 35020 Legnaro (PD), Italy
| | - Klaus Palme
- Institute of Biology II/Molecular Plant Physiology, Faculty of Biology, Albert-Ludwigs-University of Freiburg, Schänzlestrasse 1, D-79104 Freiburg, Germany
- Centre for Biological Systems Analysis, Albert-Ludwigs-University of Freiburg, Habsburgerstrasse 49, D-79104 Freiburg, Germany
- Freiburg Institute for Advanced Sciences (FRIAS), Albert-Ludwigs-University of Freiburg, Albertstrasse 19, D-79104 Freiburg, Germany
- Centre for Biological Signalling Studies (bioss), Albert-Ludwigs-University of Freiburg, Albertstrasse 19, D-79104 Freiburg, Germany
- Freiburg Initiative for Systems Biology (FRISYS), Albert-Ludwigs-University of Freiburg, Schänzlestrasse 1, D-79104 Freiburg, Germany
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Abstract
Tomato is a model and economically important crop plant with little information available about gene expression in roots. Currently, there have only been a few studies that examine hormonal responses in tomato roots and none at a genome-wide level. This study examined the transcriptome atlas of tomato root regions (root tip, lateral roots, and whole roots) and the transcriptional regulation of each root region in response to the plant hormones cytokinin and auxin using Illumina RNA sequencing. More than 165 million 1×54 base pair reads were mapped onto the Solanum lycopersicum reference genome and differential expression patterns in each root region in response to each hormone were assessed. Many novel cytokinin- and auxin-induced and -repressed genes were identified as significantly differentially expressed and the expression levels of several were confirmed by qPCR. A number of these regulated genes represent tomato orthologues of cytokinin- or auxin-regulated genes identified in other species, including CKXs, type-A RRs, Aux/IAAs, and ARFs. Additionally, the data confirm some of the hormone regulation studies for recently examined genes in tomato such as SlIAAs and SlGH3s. Moreover, genes expressed abundantly in each root region were identified which provide a spatial distribution of many classes of genes, including plant defence, secondary metabolite production, and general metabolism across the root. Overall this study presents the first global expression patterns of hormone-regulated transcripts in tomato roots, which will be functionally relevant for future studies directed towards tomato root growth and development.
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Affiliation(s)
- Sarika Gupta
- Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA
| | - Xiuling Shi
- Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA
| | - Ingrid E. Lindquist
- National Center for Genome Resources, 2935 Rodeo Park Drive East, Santa Fe, NM 87505, USA
| | - Nicholas Devitt
- National Center for Genome Resources, 2935 Rodeo Park Drive East, Santa Fe, NM 87505, USA
| | - Joann Mudge
- National Center for Genome Resources, 2935 Rodeo Park Drive East, Santa Fe, NM 87505, USA
| | - Aaron M. Rashotte
- Department of Biological Sciences, Auburn University, Auburn, AL 36849, USA
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Xu W, Jia L, Baluška F, Ding G, Shi W, Ye N, Zhang J. PIN2 is required for the adaptation of Arabidopsis roots to alkaline stress by modulating proton secretion. J Exp Bot 2012; 63:6105-14. [PMID: 23002434 PMCID: PMC3481202 DOI: 10.1093/jxb/ers259] [Citation(s) in RCA: 63] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/18/2023]
Abstract
Soil alkalinity is a widespread environmental problem that limits agricultural productivity. The hypothesis that an auxin-regulated proton secretion by plasma membrane H(+)-ATPase plays an important role in root adaption to alkaline stress was studied. It was found that alkaline stress increased auxin transport and PIN2 (an auxin efflux transporter) abundance in the root tip of wild-type Arabidopsis plants (WT). Compared with WT roots, the pin2 mutant roots exhibited much reduced plasma membrane H(+)-ATPase activity, root elongation, auxin transport, and proton secretion under alkaline stress. More importantly, roots of the pks5 mutant (PKS5, a protein kinase) lacking PIN2 (a pks5/pin2 double mutant) lost the previous higher proton-secretion capacity and higher elongation rate of primary roots under alkaline stress. By using Arabidopsis natural accessions with a high proton-secretion capacity, it was found that their PIN2 transcription abundance is positively related to the elongation rate of the primary root and proton-secretion capacity under alkaline stress. Taken together, our results confirm that PIN2 is involved in the PKS5-mediated signalling cascade under alkaline-stress and suggest that PIN2 is required for the adaptation of roots to alkaline stress by modulating proton secretion in the root tip to maintain primary root elongation.
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Affiliation(s)
- Weifeng Xu
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
- These authors contributed equally to this paper
| | - Liguo Jia
- Department of Biology, Hong Kong Baptist University, Hong Kong,China
- These authors contributed equally to this paper
| | - František Baluška
- Institute of Cellular and Molecular Botany, University of Bonn, Kirschellee 1, 53115 Bonn, Germany
| | - Guochang Ding
- College of Forestry, Fujian Agriculture and Forestry University, Fuzhou 350002, China
| | - Weiming Shi
- State Key Laboratory of Soil and Sustainable Agriculture, Institute of Soil Science, Chinese Academy of Sciences, Nanjing 210008, China
- To whom correspondence should be addressed: E-mail: ;
| | - Nenghui Ye
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong
| | - Jianhua Zhang
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Shatin, Hong Kong
- To whom correspondence should be addressed: E-mail: ;
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CHEN RONGFU, SHEN RENFANG, GU PEI, DONG XIAOYING, DU CHANGWEN, MA JIANFENG. Response of rice (Oryza sativa) with root surface iron plaque under aluminium stress. Ann Bot 2006; 98:389-95. [PMID: 16735401 PMCID: PMC2803463 DOI: 10.1093/aob/mcl110] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/19/2006] [Revised: 03/24/2006] [Accepted: 04/10/2006] [Indexed: 05/09/2023]
Abstract
BACKGROUND AND AIMS Rice (Oryza sativa) is an aquatic plant with a characteristic of forming iron plaque on its root surfaces. It is considered to be the most Al-tolerant species among the cereal crops. The objective of this study was to determine the effects of root surface iron plaque on Al translocation, accumulation and the change of physiological responses under Al stress in rice in the presence of iron plaque. METHODS The japonica variety rice, Koshihikari, was used in this study and was grown hydroponically in a growth chamber. Iron plaque was induced by exposing the rice roots to 30 mg L(-1) ferrous iron either as Fe(II)-EDTA in nutrient solution (6 d, Method I) or as FeSO(4) in water solution (12 h, Method II). Organic acid in root exudates was retained in the anion-exchange resin and eluted with 2 m HCl, then analysed by high-performance liquid chromatography (HPLC) after proper pre-treatment. Fe and Al in iron plaque were extracted with DCB (dithionite-citrate-bicarbonate) solution. KEY RESULTS AND CONCLUSIONS Both methods (I and II) could induce the formation of iron plaque on rice root surfaces. The amounts of DCB-extractable Fe and Al on root surfaces were much higher in the presence of iron plaque than in the absence of iron plaque. Al contents in root tips were significantly decreased with iron plaque; translocation of Al from roots to shoots was significantly reduced with iron plaque. Al-induced secretion of citrate was observed and iron plaque could greatly depress this citrate secretion. These results suggested that iron plaque on rice root surfaces can be a sink to sequester Al onto the root surfaces and Fe ions can pre-saturate Al-binding sites in root tips, which protects the rice root tips from suffering Al stress to a certain extent.
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Affiliation(s)
- RONG FU CHEN
- State Key Laboratory of Soil and Sustainable Agriculture (Institute of Soil Science, Chinese Academy of Sciences), Nanjing 210008, China, Graduate School of the Chinese Academy of Sciences, Beijing 100039, China and Research Institute for Bioresources, Okayama University, 2-20-1, Chuo, Kurashiki, 710-0046 Japan
| | - REN FANG SHEN
- State Key Laboratory of Soil and Sustainable Agriculture (Institute of Soil Science, Chinese Academy of Sciences), Nanjing 210008, China, Graduate School of the Chinese Academy of Sciences, Beijing 100039, China and Research Institute for Bioresources, Okayama University, 2-20-1, Chuo, Kurashiki, 710-0046 Japan
| | - PEI GU
- State Key Laboratory of Soil and Sustainable Agriculture (Institute of Soil Science, Chinese Academy of Sciences), Nanjing 210008, China, Graduate School of the Chinese Academy of Sciences, Beijing 100039, China and Research Institute for Bioresources, Okayama University, 2-20-1, Chuo, Kurashiki, 710-0046 Japan
| | - XIAO YING DONG
- State Key Laboratory of Soil and Sustainable Agriculture (Institute of Soil Science, Chinese Academy of Sciences), Nanjing 210008, China, Graduate School of the Chinese Academy of Sciences, Beijing 100039, China and Research Institute for Bioresources, Okayama University, 2-20-1, Chuo, Kurashiki, 710-0046 Japan
| | - CHANG WEN DU
- State Key Laboratory of Soil and Sustainable Agriculture (Institute of Soil Science, Chinese Academy of Sciences), Nanjing 210008, China, Graduate School of the Chinese Academy of Sciences, Beijing 100039, China and Research Institute for Bioresources, Okayama University, 2-20-1, Chuo, Kurashiki, 710-0046 Japan
| | - JIAN FENG MA
- State Key Laboratory of Soil and Sustainable Agriculture (Institute of Soil Science, Chinese Academy of Sciences), Nanjing 210008, China, Graduate School of the Chinese Academy of Sciences, Beijing 100039, China and Research Institute for Bioresources, Okayama University, 2-20-1, Chuo, Kurashiki, 710-0046 Japan
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28
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Jordy MN, Azémar-Lorentz S, Brun A, Botton B, Pargney JC. Cytolocalization of glycogen, starch, and other insoluble polysaccharides during ontogeny of Paxillus involutus-Betula pendula ectomycorrhizas. New Phytol 1998; 140:331-341. [PMID: 33862837 DOI: 10.1046/j.1469-8137.1998.00254.x] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Affiliation(s)] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/12/2023]
Abstract
The Paxillus involutus (Fries) Karsten-Betula pendula Roth association was studied during the early stages of formation. Cytological studies revealed fungal colonization behind the root cap and gradually around the entire root apex. Ultrastructural investigations were carried out and insoluble polysaccharide distribution was followed. The density of starch grains increased in plant cells especially after 4 d of contact between the two partners, but later on decreased strongly in the root cap. Large amounts of glycogen were revealed in the hyphae in certain mycorrhizal regions after 6 d of contact: in the Hartig net, in the inner sheath but only near the net, and all along the outer sheath surrounding the mycorrhiza. Thickenings of the epidermal cell walls were detected as early as 2 d after contact and then varied according to the distance from the root tip. Such polysaccharide distributions are assumed to show a transfer of carbohydrates from the root to the fungus and are discussed in terms of carbon requirements for both partners.
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Affiliation(s)
- M N Jordy
- Laboratoire de Biologie Forestière, Université Henri Poincaré, Nancy I, BP 239, 54506 Vandoeuvre-Lès-Nancy, France
| | - S Azémar-Lorentz
- Laboratoire de Biologie Forestière, Université Henri Poincaré, Nancy I, BP 239, 54506 Vandoeuvre-Lès-Nancy, France
| | - A Brun
- Laboratoire de Biologie Forestière, Université Henri Poincaré, Nancy I, BP 239, 54506 Vandoeuvre-Lès-Nancy, France
| | - B Botton
- Laboratoire de Biologie Forestière, Université Henri Poincaré, Nancy I, BP 239, 54506 Vandoeuvre-Lès-Nancy, France
- To whom correspondence should be addressed. E-mail:
| | - J C Pargney
- Laboratoire de Biologie Forestière, Université Henri Poincaré, Nancy I, BP 239, 54506 Vandoeuvre-Lès-Nancy, France
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