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For: Word JM, Bateman RC, Presley BK, Lovell SC, Richardson DC. Exploring steric constraints on protein mutations using MAGE/PROBE. Protein Sci 2000;9:2251-9. [PMID: 11152136 PMCID: PMC2144501 DOI: 10.1110/ps.9.11.2251] [Citation(s) in RCA: 59] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Number Cited by Other Article(s)
1
Wang S, Reeve SM, Holt GT, Ojewole AA, Frenkel MS, Gainza P, Keshipeddy S, Fowler VG, Wright DL, Donald BR. Chiral evasion and stereospecific antifolate resistance in Staphylococcus aureus. PLoS Comput Biol 2022;18:e1009855. [PMID: 35143481 PMCID: PMC8865654 DOI: 10.1371/journal.pcbi.1009855] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Revised: 02/23/2022] [Accepted: 01/21/2022] [Indexed: 11/19/2022]  Open
2
Koga N, Koga R, Liu G, Castellanos J, Montelione GT, Baker D. Role of backbone strain in de novo design of complex α/β protein structures. Nat Commun 2021;12:3921. [PMID: 34168113 PMCID: PMC8225619 DOI: 10.1038/s41467-021-24050-7] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/03/2020] [Accepted: 05/28/2021] [Indexed: 12/24/2022]  Open
3
De novo protein design by citizen scientists. Nature 2019;570:390-394. [PMID: 31168091 PMCID: PMC6701466 DOI: 10.1038/s41586-019-1274-4] [Citation(s) in RCA: 83] [Impact Index Per Article: 13.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/19/2018] [Accepted: 05/14/2019] [Indexed: 01/15/2023]
4
Gibbs AC, Steele R, Liu G, Tounge BA, Montelione GT. Inhibitor Bound Dengue NS2B-NS3pro Reveals Multiple Dynamic Binding Modes. Biochemistry 2018;57:1591-1602. [PMID: 29447443 DOI: 10.1021/acs.biochem.7b01127] [Citation(s) in RCA: 25] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
5
Čalyševa J, Vihinen M. PON-SC - program for identifying steric clashes caused by amino acid substitutions. BMC Bioinformatics 2017;18:531. [PMID: 29187139 PMCID: PMC5707825 DOI: 10.1186/s12859-017-1947-7] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2017] [Accepted: 11/21/2017] [Indexed: 11/10/2022]  Open
6
Wei W, Monard G, Gauld J. Computational insights into substrate binding and catalytic mechanism of the glutaminase domain of glucosamine-6-phosphate synthase (GlmS). RSC Adv 2017. [DOI: 10.1039/c7ra04906d] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]  Open
7
Basanta B, Chan KK, Barth P, King T, Sosnick TR, Hinshaw JR, Liu G, Everett JK, Xiao R, Montelione GT, Baker D. Introduction of a polar core into the de novo designed protein Top7. Protein Sci 2016;25:1299-307. [PMID: 26873166 PMCID: PMC4918430 DOI: 10.1002/pro.2899] [Citation(s) in RCA: 6] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/02/2015] [Revised: 02/04/2016] [Accepted: 02/08/2016] [Indexed: 01/26/2023]
8
Lukacik P, Lobley CMC, Bumann M, Arena de Souza V, Owens RJ, O’Toole PW, Walsh MA. High-resolution structures of Lactobacillus salivarius transketolase in the presence and absence of thiamine pyrophosphate. Acta Crystallogr F Struct Biol Commun 2015;71:1327-34. [PMID: 26457526 PMCID: PMC4601599 DOI: 10.1107/s2053230x1501657x] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/08/2015] [Accepted: 09/04/2015] [Indexed: 11/12/2023]  Open
9
Owen CD, Lukacik P, Potter JA, Sleator O, Taylor GL, Walsh MA. Streptococcus pneumoniae NanC: STRUCTURAL INSIGHTS INTO THE SPECIFICITY AND MECHANISM OF A SIALIDASE THAT PRODUCES A SIALIDASE INHIBITOR. J Biol Chem 2015;290:27736-48. [PMID: 26370075 PMCID: PMC4646021 DOI: 10.1074/jbc.m115.673632] [Citation(s) in RCA: 38] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/29/2015] [Indexed: 12/26/2022]  Open
10
Liu G, Poppe L, Aoki K, Yamane H, Lewis J, Szyperski T. High-quality NMR structure of human anti-apoptotic protein domain Mcl-1(171-327) for cancer drug design. PLoS One 2014;9:e96521. [PMID: 24789074 PMCID: PMC4008586 DOI: 10.1371/journal.pone.0096521] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/17/2013] [Accepted: 04/08/2014] [Indexed: 12/18/2022]  Open
11
Christensen T, Hassouneh W, Trabbic-Carlson K, Chilkoti A. Predicting transition temperatures of elastin-like polypeptide fusion proteins. Biomacromolecules 2013;14:1514-9. [PMID: 23565607 DOI: 10.1021/bm400167h] [Citation(s) in RCA: 96] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
12
Principles for designing ideal protein structures. Nature 2013;491:222-7. [PMID: 23135467 DOI: 10.1038/nature11600] [Citation(s) in RCA: 418] [Impact Index Per Article: 34.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/17/2012] [Accepted: 09/19/2012] [Indexed: 02/03/2023]
13
Talavera D, Williams SG, Norris MG, Robertson DL, Lovell SC. Evolvability of Yeast Protein–Protein Interaction Interfaces. J Mol Biol 2012;419:387-96. [DOI: 10.1016/j.jmb.2012.03.021] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2011] [Revised: 03/24/2012] [Accepted: 03/27/2012] [Indexed: 01/27/2023]
14
Headd JJ, Echols N, Afonine PV, Grosse-Kunstleve RW, Chen VB, Moriarty NW, Richardson DC, Richardson JS, Adams PD. Use of knowledge-based restraints in phenix.refine to improve macromolecular refinement at low resolution. ACTA CRYSTALLOGRAPHICA. SECTION D, BIOLOGICAL CRYSTALLOGRAPHY 2012;68:381-90. [PMID: 22505258 PMCID: PMC3322597 DOI: 10.1107/s0907444911047834] [Citation(s) in RCA: 201] [Impact Index Per Article: 15.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 07/01/2011] [Accepted: 11/10/2011] [Indexed: 11/10/2022]
15
Qiu JA, Wilson HL, Rajagopalan KV. Structure-based alteration of substrate specificity and catalytic activity of sulfite oxidase from sulfite oxidation to nitrate reduction. Biochemistry 2012;51:1134-47. [PMID: 22263579 DOI: 10.1021/bi201206v] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
16
Williams SG, Madan R, Norris MGS, Archer J, Mizuguchi K, Robertson DL, Lovell SC. Using knowledge of protein structural constraints to predict the evolution of HIV-1. J Mol Biol 2011;410:1023-34. [PMID: 21763504 DOI: 10.1016/j.jmb.2011.04.037] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2011] [Revised: 04/12/2011] [Accepted: 04/13/2011] [Indexed: 10/18/2022]
17
Mani R, Vorobiev S, Swapna GVT, Neely H, Janjua H, Ciccosanti C, Xiao R, Acton TB, Everett JK, Hunt J, Montelione GT. Solution NMR and X-ray crystal structures of membrane-associated Lipoprotein-17 domain reveal a novel fold. JOURNAL OF STRUCTURAL AND FUNCTIONAL GENOMICS 2011;12:27-32. [PMID: 21153711 PMCID: PMC3636556 DOI: 10.1007/s10969-010-9099-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 07/22/2010] [Accepted: 11/04/2010] [Indexed: 10/18/2022]
18
Liu G, Huang YJ, Xiao R, Wang D, Acton TB, Montelione GT. Solution NMR structure of the ARID domain of human AT-rich interactive domain-containing protein 3A: a human cancer protein interaction network target. Proteins 2010;78:2170-5. [PMID: 20455271 PMCID: PMC2869213 DOI: 10.1002/prot.22718] [Citation(s) in RCA: 12] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
19
Weijers RN. Three-dimensional structure of beta-cell-specific zinc transporter, ZnT-8, predicted from the type 2 diabetes-associated gene variant SLC30A8 R325W. Diabetol Metab Syndr 2010;2:33. [PMID: 20525392 PMCID: PMC2890542 DOI: 10.1186/1758-5996-2-33] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 01/26/2010] [Accepted: 06/05/2010] [Indexed: 01/22/2023]  Open
20
Qiu JA, Wilson HL, Pushie MJ, Kisker C, George GN, Rajagopalan KV. The structures of the C185S and C185A mutants of sulfite oxidase reveal rearrangement of the active site. Biochemistry 2010;49:3989-4000. [PMID: 20356030 DOI: 10.1021/bi1001954] [Citation(s) in RCA: 24] [Impact Index Per Article: 1.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
21
Liu G, Huang YJ, Xiao R, Wang D, Acton TB, Montelione GT. NMR structure of F-actin-binding domain of Arg/Abl2 from Homo sapiens. Proteins 2010;78:1326-30. [PMID: 20077570 DOI: 10.1002/prot.22656] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
22
Singarapu KK, Mills JL, Xiao R, Acton T, Punta M, Fischer M, Honig B, Rost B, Montelione GT, Szyperski T. Solution NMR structures of proteins VPA0419 from Vibrio parahaemolyticus and yiiS from Shigella flexneri provide structural coverage for protein domain family PFAM 04175. Proteins 2010;78:779-84. [PMID: 19927321 PMCID: PMC2860719 DOI: 10.1002/prot.22630] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/23/2022]
23
Chen VB, Davis IW, Richardson DC. KING (Kinemage, Next Generation): a versatile interactive molecular and scientific visualization program. Protein Sci 2010;18:2403-9. [PMID: 19768809 DOI: 10.1002/pro.250] [Citation(s) in RCA: 123] [Impact Index Per Article: 8.2] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
24
Eletsky A, Sukumaran DK, Xiao R, Acton T, Rost B, Montelione GT, Szyperski T. NMR structure of protein YvyC from Bacillus subtilis reveals unexpected structural similarity between two PFAM families. Proteins 2009;76:1037-41. [PMID: 19455708 PMCID: PMC2735722 DOI: 10.1002/prot.22459] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]
25
Thusberg J, Vihinen M. Pathogenic or not? And if so, then how? Studying the effects of missense mutations using bioinformatics methods. Hum Mutat 2009;30:703-14. [PMID: 19267389 DOI: 10.1002/humu.20938] [Citation(s) in RCA: 180] [Impact Index Per Article: 11.3] [Reference Citation Analysis] [Abstract] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/05/2023]
26
Liu G, Forouhar F, Eletsky A, Atreya HS, Aramini JM, Xiao R, Huang YJ, Abashidze M, Seetharaman J, Liu J, Rost B, Acton T, Montelione GT, Hunt JF, Szyperski T. NMR and X-RAY structures of human E2-like ubiquitin-fold modifier conjugating enzyme 1 (UFC1) reveal structural and functional conservation in the metazoan UFM1-UBA5-UFC1 ubiquination pathway. JOURNAL OF STRUCTURAL AND FUNCTIONAL GENOMICS 2009;10:127-36. [PMID: 19101823 PMCID: PMC2850604 DOI: 10.1007/s10969-008-9054-7] [Citation(s) in RCA: 22] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 04/22/2008] [Accepted: 11/28/2008] [Indexed: 11/25/2022]
27
Parish D, Benach J, Liu G, Singarapu KK, Xiao R, Acton T, Su M, Bansal S, Prestegard JH, Hunt J, Montelione GT, Szyperski T. Protein chaperones Q8ZP25_SALTY from Salmonella typhimurium and HYAE_ECOLI from Escherichia coli exhibit thioredoxin-like structures despite lack of canonical thioredoxin active site sequence motif. JOURNAL OF STRUCTURAL AND FUNCTIONAL GENOMICS 2008;9:41-9. [PMID: 19039680 PMCID: PMC2850599 DOI: 10.1007/s10969-008-9050-y] [Citation(s) in RCA: 11] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Subscribe] [Scholar Register] [Received: 07/25/2008] [Accepted: 11/10/2008] [Indexed: 10/21/2022]
28
Lappalainen I, Thusberg J, Shen B, Vihinen M. Genome wide analysis of pathogenic SH2 domain mutations. Proteins 2008;72:779-92. [PMID: 18260110 DOI: 10.1002/prot.21970] [Citation(s) in RCA: 45] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/30/2022]
29
Cui F, Jernigan R, Wu Z. Knowledge-based versus experimentally acquired distance and angle constraints for NMR structure refinement. J Bioinform Comput Biol 2008;6:283-300. [PMID: 18464323 DOI: 10.1142/s0219720008003448] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/16/2007] [Revised: 10/30/2007] [Accepted: 11/17/2007] [Indexed: 11/18/2022]
30
Singarapu KK, Xiao R, Acton T, Rost B, Montelione GT, Szyperski T. NMR structure of the peptidyl-tRNA hydrolase domain from Pseudomonas syringae expands the structural coverage of the hydrolysis domains of class 1 peptide chain release factors. Proteins 2008;71:1027-31. [PMID: 18247350 DOI: 10.1002/prot.21947] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/07/2022]
31
Consistent blind protein structure generation from NMR chemical shift data. Proc Natl Acad Sci U S A 2008;105:4685-90. [PMID: 18326625 DOI: 10.1073/pnas.0800256105] [Citation(s) in RCA: 669] [Impact Index Per Article: 39.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
32
Singarapu KK, Xiao R, Sukumaran DK, Acton T, Montelione GT, Szyperski T. NMR structure of protein Cgl2762 from Corynebacterium glutamicum implicated in DNA transposition reveals a helix-turn-helix motif attached to a flexibly disordered leucine zipper. Proteins 2008;70:1650-4. [PMID: 18175328 DOI: 10.1002/prot.21840] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/09/2022]
33
Bhattacharya A, Wunderlich Z, Monleon D, Tejero R, Montelione GT. Assessing model accuracy using the homology modeling automatically software. Proteins 2007;70:105-18. [PMID: 17640066 DOI: 10.1002/prot.21466] [Citation(s) in RCA: 33] [Impact Index Per Article: 1.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
34
Singarapu KK, Liu G, Xiao R, Bertonati C, Honig B, Montelione GT, Szyperski T. NMR structure of protein yjbR from Escherichia coli reveals 'double-wing' DNA binding motif. Proteins 2007;67:501-4. [PMID: 17266124 DOI: 10.1002/prot.21297] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
35
Bhattacharya A, Tejero R, Montelione GT. Evaluating protein structures determined by structural genomics consortia. Proteins 2007;66:778-95. [PMID: 17186527 DOI: 10.1002/prot.21165] [Citation(s) in RCA: 603] [Impact Index Per Article: 33.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/10/2022]
36
Thusberg J, Vihinen M. The structural basis of hyper IgM deficiency – CD40L mutations. Protein Eng Des Sel 2007;20:133-41. [PMID: 17307885 DOI: 10.1093/protein/gzm004] [Citation(s) in RCA: 39] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
37
Lin YC, Liu G, Shen Y, Bertonati C, Yee A, Honig B, Arrowsmith CH, Szyperski T. NMR structure of protein PA2021 from Pseudomonas aeruginosa. Proteins 2007;65:767-70. [PMID: 16927296 DOI: 10.1002/prot.21098] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
38
Thusberg J, Vihinen M. Bioinformatic analysis of protein structure-function relationships: case study of leukocyte elastase (ELA2) missense mutations. Hum Mutat 2006;27:1230-43. [PMID: 16986121 DOI: 10.1002/humu.20407] [Citation(s) in RCA: 43] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/08/2023]
39
Kapustina M, Carter CW. Computational studies of tryptophanyl-tRNA synthetase: activation of ATP by induced-fit. J Mol Biol 2006;362:1159-80. [PMID: 16949606 DOI: 10.1016/j.jmb.2006.06.078] [Citation(s) in RCA: 46] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/29/2005] [Revised: 05/24/2006] [Accepted: 06/30/2006] [Indexed: 11/21/2022]
40
Davis IW, Arendall WB, Richardson DC, Richardson JS. The backrub motion: how protein backbone shrugs when a sidechain dances. Structure 2006;14:265-74. [PMID: 16472746 DOI: 10.1016/j.str.2005.10.007] [Citation(s) in RCA: 202] [Impact Index Per Article: 10.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/06/2005] [Revised: 10/10/2005] [Accepted: 10/12/2005] [Indexed: 11/16/2022]
41
Arendall WB, Tempel W, Richardson JS, Zhou W, Wang S, Davis IW, Liu ZJ, Rose JP, Carson WM, Luo M, Richardson DC, Wang BC. A test of enhancing model accuracy in high-throughput crystallography. ACTA ACUST UNITED AC 2006;6:1-11. [PMID: 15965733 DOI: 10.1007/s10969-005-3138-4] [Citation(s) in RCA: 42] [Impact Index Per Article: 2.2] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2005] [Accepted: 02/10/2005] [Indexed: 11/30/2022]
42
Liu G, Shen Y, Xiao R, Acton T, Ma LC, Joachimiak A, Montelione GT, Szyperski T. NMR structure of protein yqbG from Bacillus subtilis reveals a novel α-helical protein fold. Proteins 2005;62:288-91. [PMID: 16281282 DOI: 10.1002/prot.20666] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.1] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
43
Liu G, Shen Y, Atreya HS, Parish D, Shao Y, Sukumaran DK, Xiao R, Yee A, Lemak A, Bhattacharya A, Acton TA, Arrowsmith CH, Montelione GT, Szyperski T. NMR data collection and analysis protocol for high-throughput protein structure determination. Proc Natl Acad Sci U S A 2005;102:10487-92. [PMID: 16027363 PMCID: PMC1180791 DOI: 10.1073/pnas.0504338102] [Citation(s) in RCA: 89] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/06/2004] [Indexed: 11/18/2022]  Open
44
Snyder DA, Bhattacharya A, Huang YJ, Montelione GT. Assessing precision and accuracy of protein structures derived from NMR data. Proteins 2005;59:655-61. [PMID: 15822105 DOI: 10.1002/prot.20499] [Citation(s) in RCA: 40] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/11/2022]
45
Huang YJ, Moseley HNB, Baran MC, Arrowsmith C, Powers R, Tejero R, Szyperski T, Montelione GT. An integrated platform for automated analysis of protein NMR structures. Methods Enzymol 2005;394:111-41. [PMID: 15808219 DOI: 10.1016/s0076-6879(05)94005-6] [Citation(s) in RCA: 55] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/03/2022]
46
Baran MC, Huang YJ, Moseley HNB, Montelione GT. Automated analysis of protein NMR assignments and structures. Chem Rev 2004;104:3541-56. [PMID: 15303826 DOI: 10.1021/cr030408p] [Citation(s) in RCA: 74] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
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Persaud-Sawin DA, McNamara JO, Rylova S, Vandongen A, Boustany RMN. A galactosylceramide binding domain is involved in trafficking of CLN3 from Golgi to rafts via recycling endosomes. Pediatr Res 2004;56:449-63. [PMID: 15240864 DOI: 10.1203/01.pdr.0000136152.54638.95] [Citation(s) in RCA: 56] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
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Wales TE, Richardson JS, Fitzgerald MC. Facile chemical synthesis and equilibrium unfolding properties of CopG. Protein Sci 2004;13:1918-26. [PMID: 15169951 PMCID: PMC2279938 DOI: 10.1110/ps.04671804] [Citation(s) in RCA: 7] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/26/2022]
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Richardson JS, Bryan WA, Richardson DC. New tools and data for improving structures, using all-atom contacts. Methods Enzymol 2004;374:385-412. [PMID: 14696383 DOI: 10.1016/s0076-6879(03)74018-x] [Citation(s) in RCA: 20] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/23/2023]
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Murray LJW, Arendall WB, Richardson DC, Richardson JS. RNA backbone is rotameric. Proc Natl Acad Sci U S A 2003;100:13904-9. [PMID: 14612579 PMCID: PMC283519 DOI: 10.1073/pnas.1835769100] [Citation(s) in RCA: 149] [Impact Index Per Article: 6.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/18/2022]  Open
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