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For: Kreisberg JF, Betts SD, King J. Beta-helix core packing within the triple-stranded oligomerization domain of the P22 tailspike. Protein Sci 2000;9:2338-43. [PMID: 11206055 PMCID: PMC2144511 DOI: 10.1110/ps.9.12.2338] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2022]
Number Cited by Other Article(s)
1
Park H, Kim J, Kim M, Park Y, Ryu S. Development of new strategy combining heat treatment and phage cocktail for post-contamination prevention. Food Res Int 2021;145:110415. [PMID: 34112418 DOI: 10.1016/j.foodres.2021.110415] [Citation(s) in RCA: 13] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/09/2020] [Revised: 04/02/2021] [Accepted: 04/05/2021] [Indexed: 12/12/2022]
2
Lee IM, Tu IF, Yang FL, Ko TP, Liao JH, Lin NT, Wu CY, Ren CT, Wang AHJ, Chang CM, Huang KF, Wu SH. Structural basis for fragmenting the exopolysaccharide of Acinetobacter baumannii by bacteriophage ΦAB6 tailspike protein. Sci Rep 2017;7:42711. [PMID: 28209973 PMCID: PMC5314372 DOI: 10.1038/srep42711] [Citation(s) in RCA: 42] [Impact Index Per Article: 5.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2016] [Accepted: 01/12/2017] [Indexed: 12/24/2022]  Open
3
Zanuy D, Rodríguez-Ropero F, Haspel N, Zheng J, Nussinov R, Aleman C. Stability of tubular structures based on beta-helical proteins: self-assembled versus polymerized nanoconstructs and wild-type versus mutated sequences. Biomacromolecules 2007;8:3135-46. [PMID: 17854222 DOI: 10.1021/bm700561t] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/24/2023]
4
Curcó D, Nussinov R, Aleman C. Coarse-grained representation of beta-helical protein building blocks. J Phys Chem B 2007;111:10538-49. [PMID: 17691836 DOI: 10.1021/jp072832q] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/29/2022]
5
Tsai HHG, Gunasekaran K, Nussinov R. Sequence and structure analysis of parallel beta helices: implication for constructing amyloid structural models. Structure 2006;14:1059-72. [PMID: 16765899 DOI: 10.1016/j.str.2006.03.015] [Citation(s) in RCA: 37] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/27/2005] [Revised: 02/13/2006] [Accepted: 03/25/2006] [Indexed: 11/18/2022]
6
Liu Y, Carbonell J, Weigele P, Gopalakrishnan V. Protein Fold Recognition Using Segmentation Conditional Random Fields (SCRFs). J Comput Biol 2006;13:394-406. [PMID: 16597248 DOI: 10.1089/cmb.2006.13.394] [Citation(s) in RCA: 21] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022]  Open
7
Jain M, Evans MS, King J, Clark PL. Monoclonal Antibody Epitope Mapping Describes Tailspike β-Helix Folding and Aggregation Intermediates. J Biol Chem 2005;280:23032-40. [PMID: 15833745 DOI: 10.1074/jbc.m501963200] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
8
Betts S, Haase-Pettingell C, Cook K, King J. Buried hydrophobic side-chains essential for the folding of the parallel beta-helix domains of the P22 tailspike. Protein Sci 2005;13:2291-303. [PMID: 15322277 PMCID: PMC2280027 DOI: 10.1110/ps.04676704] [Citation(s) in RCA: 10] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/14/2023]
9
Gage MJ, Robinson AS. C-terminal hydrophobic interactions play a critical role in oligomeric assembly of the P22 tailspike trimer. Protein Sci 2003;12:2732-47. [PMID: 14627734 PMCID: PMC2366982 DOI: 10.1110/ps.03150303] [Citation(s) in RCA: 20] [Impact Index Per Article: 0.9] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2003] [Revised: 09/08/2003] [Accepted: 09/08/2003] [Indexed: 10/26/2022]
10
Cowen L, Bradley P, Menke M, King J, Berger B. Predicting the beta-helix fold from protein sequence data. J Comput Biol 2002;9:261-76. [PMID: 12015881 DOI: 10.1089/10665270252935458] [Citation(s) in RCA: 32] [Impact Index Per Article: 1.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/13/2022]  Open
11
Kreisberg JF, Betts SD, Haase-Pettingell C, King J. The interdigitated beta-helix domain of the P22 tailspike protein acts as a molecular clamp in trimer stabilization. Protein Sci 2002;11:820-30. [PMID: 11910025 PMCID: PMC2373520 DOI: 10.1110/ps.3440102] [Citation(s) in RCA: 29] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/17/2022]
12
Mitraki A, Miller S, van Raaij MJ. Review: conformation and folding of novel beta-structural elements in viral fiber proteins: the triple beta-spiral and triple beta-helix. J Struct Biol 2002;137:236-47. [PMID: 12064949 DOI: 10.1006/jsbi.2002.4447] [Citation(s) in RCA: 43] [Impact Index Per Article: 1.9] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
13
Bradley P, Cowen L, Menke M, King J, Berger B. BETAWRAP: successful prediction of parallel beta -helices from primary sequence reveals an association with many microbial pathogens. Proc Natl Acad Sci U S A 2001;98:14819-24. [PMID: 11752429 PMCID: PMC64942 DOI: 10.1073/pnas.251267298] [Citation(s) in RCA: 87] [Impact Index Per Article: 3.6] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/29/2001] [Indexed: 11/18/2022]  Open
14
Jenkins J, Pickersgill R. The architecture of parallel beta-helices and related folds. PROGRESS IN BIOPHYSICS AND MOLECULAR BIOLOGY 2001;77:111-75. [PMID: 11747907 DOI: 10.1016/s0079-6107(01)00013-x] [Citation(s) in RCA: 193] [Impact Index Per Article: 8.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
15
Clark PL, King J. A newly synthesized, ribosome-bound polypeptide chain adopts conformations dissimilar from early in vitro refolding intermediates. J Biol Chem 2001;276:25411-20. [PMID: 11319217 DOI: 10.1074/jbc.m008490200] [Citation(s) in RCA: 66] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]  Open
16
Raso SW, Clark PL, Haase-Pettingell C, King J, Thomas GJ. Distinct cysteine sulfhydryl environments detected by analysis of Raman S-hh markers of Cys-->Ser mutant proteins. J Mol Biol 2001;307:899-911. [PMID: 11273709 DOI: 10.1006/jmbi.2001.4476] [Citation(s) in RCA: 57] [Impact Index Per Article: 2.4] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/22/2022]
17
Haase-Pettingell C, Betts S, Raso SW, Stuart L, Robinson A, King J. Role for cysteine residues in the in vivo folding and assembly of the phage P22 tailspike. Protein Sci 2001;10:397-410. [PMID: 11266625 PMCID: PMC2373931 DOI: 10.1110/ps.34701] [Citation(s) in RCA: 26] [Impact Index Per Article: 1.1] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/14/2022]
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