Functional-trait ecology of the plateau pika Ochotona curzoniae in the Qinghai-Tibetan Plateau ecosystem

Connecting the dots: Managing species interaction networks to mitigate the impacts of global change

Global change is causing unprecedented degradation of the Earth's biological systems and thus undermining human prosperity. Past practices have focused either on monitoring biodiversity decline or mitigating ecosystem services degradation. Missing, but critically needed, are management approaches that monitor and restore species interaction networks, thus bridging existing practices. Our overall aim here is to lay the foundations of a framework for developing network management, defined here as the study, monitoring, and management of species interaction networks. We review theory and empirical evidence demonstrating the importance of species interaction networks for the provisioning of ecosystem services, how human impacts on those networks lead to network rewiring that underlies ecosystem service degradation, and then turn to case studies showing how network management has effectively mitigated such effects or aided in network restoration. We also examine how emerging technologies for data acquisition and analysis are providing new opportunities for monitoring species interactions and discuss the opportunities and challenges of developing effective network management. In summary, we propose that network management provides key mechanistic knowledge on ecosystem degradation that links species- to ecosystem-level responses to global change, and that emerging technological tools offer the opportunity to accelerate its widespread adoption.

Dynamics of Suitable Habitats for Typical Predators and Prey on the Qinghai-Tibet Plateau Driven by Climate Change: A Case Study of Tibetan Fox, Red Fox, and Plateau Pika

The Qinghai-Tibet Plateau (QTP) is a biodiversity hotspot highly sensitive to global climate change. The Tibetan fox (Vulpes ferrilata), red fox (V. vulpes), and plateau pika (Ochotona curzoniae) are key species of the plateau, serving as typical representatives of predators and prey among its diverse wildlife. To evaluate the impact of climate change, we employed the maximum entropy model with 1237 distribution points and various environmental variables to predict habitat suitability under three global climate models and four representative concentration pathways for the 2050s and 2070s. The results revealed that the suitable habitats for two predators were projected to decline, with reductions ranging from 0.23% to 5.64% and 4.12% to 6.63%, respectively, with most reductions occurring in the central-western and southern regions of the QTP. The decline was anticipated to be more pronounced in the 2070s compared to the 2050s. Conversely, the suitable habitat for prey species, plateau pikas, was expected to experience only a slight decrease (0.45%-0.98%) under scenarios of moderate greenhouse gas emissions. Habitat centroid analyses indicated a consistent northward migration of suitable areas for both predators and prey in response to climate change on the QTP. Furthermore, future overlap analysis between predator and prey habitats showed uncertain trends; however, the overlap between the Tibetan fox and Plateau pika habitats was notably lower compared to that of the red fox and plateau pika habitats. Regarding the current conservation efforts of both predators and prey, evaluation results highlighted the critical significant role of Sanjiangyuan National Park, China's first national park located in Qinghai Province, and Qiangtang Nature Reserve in Xizang as critical areas for the protection of these species on the QTP in China. The findings and methodologies of this research hold significant reference value for the conservation of predator and prey habitats in other global biodiversity hotspots.

Ancient engineers: The role of plateau pika in shaping ecological uniqueness and guiding plant diversity conservation in alpine grasslands

Small burrowing herbivores play a crucial role in maintaining structure and function of grassland ecosystems. To date, our understanding of whether practicing ecological uniqueness can enhance plant diversity conservation under small herbivore disturbances remains limited. Here, we investigate the ecological uniqueness of plant communities, which include habitats disturbed and undisturbed by plateau pikas. In 30 geographic regions of alpine grasslands, plateau pikas lead to plant assemblages that differ from those in undisturbed habitats and reduce the ecological uniqueness. During this process, plant turnover dominate the changes in ecological uniqueness. In the presence of plateau pika, the influence of altitude is diminished, with plant relative abundance, species richness, and functional richness measurements emerging as core predictors of ecological uniqueness. Notably, the negative effect of relative abundance on ecological uniqueness shifts to a positive effect, supporting the status of the plateau pika as ecosystem engineers at larger spatial scales. A combined beta regression model incorporating bare patch areas and active burrow entrances explains 46% of the variation in the ecological uniqueness. Given the limited resources available for conservation, we propose prioritizing the protection of undisturbed and low-intensity plateau pika habitats, rather than pursuing eradication. Additionally, near-natural restoration (e.g., controlling pika populations, sustainable grazing) in highly disturbed habitats is crucial for maintaining ecological uniqueness. This study provides new insights into the roles of small burrowing herbivores at the regional scale, which can guide grassland conservation efforts.

Deciphering the role of rodents in grassland degradation; A review

Grasslands are vital ecosystems that play a crucial role in providing numerous services to both humans and the environment. Healthy grasslands are characterized by diverse vegetation, efficient soil, and abundant microbial communities, which enable them to function effectively. However, these ecosystems are at risk of degradation due to various factors, such as overgrazing, land conversion for agriculture, climate change, and rodent activities. Rodents, in particular, are known to have a significant impact on grassland ecosystems. Moderate and low rodent density can be beneficial for grassland dynamics by acting as ecological engineers, and playing a role in the food chain, while heavy rodent density and outbreaks can have detrimental effects. The rodent's activities are associated with and influenced by other driving factors of grassland degradation. Depending on their density and habitat, rodents can have either beneficial or detrimental effects on the dynamics of grasslands by altering the microbial communities, edaphic factors, and vegetation. This review focuses on rodent activities as one of the potential drivers of grassland degradation on vegetation, soil physicochemical dynamics, and microbial communities. This work also deciphers the interplay between rodent activities and other driving factors of grassland degradation. It also discusses potential strategies for mitigating the impact of rodent disturbance on degraded grasslands. Additionally, suggestions for future research directions are provided to explore the role of rodent activities in shaping the structure and functions of grassland ecosystems. The exact influence of rodent activities on grasslands is still not fully understood, and further manipulative research is needed to determine its impact on grassland dynamics.

Grazing affects ecosystem traits by regulating plateau pika activities at the landscape scale

The mechanism underlying the effects of livestock grazing on grassland ecosystem traits has been greatly discussed. However, as a common small burrowing mammal on the Tibetan Plateau grasslands, the plateau pika's (Ochotona curzoniae) influence on alpine grassland ecosystem traits has rarely been investigated, especially beyond the plot scale. In this study, we flew an unmanned aerial vehicle (UAV) over a grassland landscape under grazing and nongrazing treatments. Mounted visible spectral remote sensing, in combination with field surveys, was utilized to explore how livestock and pika grazing modify grassland ecosystem traits at the landscape scale on the Tibetan Plateau (TP). Using object-oriented classification and partial least squares regression, we retrieved the pika burrow distribution and grassland ecosystem traits. Then, the relationships among livestock grazing, pika burrowing and ecosystem traits were evaluated. The results indicated that livestock grazing reduces the alpine meadow community height by 0.13 cm and the species number by 0.25 while increasing the vegetation coverage by 9.69 % and the aboveground biomass (AGB) by 10.07 g/m2. A lower statue grassland community with greater coverage caused by livestock grazing promotes pika burrowing. Pika burrow density increases 100/ha per 1.70 % increase in vegetation coverage, a 1.87 g/m2 increase in AGB or a 0.08 m decrease in community height. Under livestock grazing, both community structure and nutrients are more strongly associated with pika burrow density. The structural equation model demonstrated that livestock grazing regulates pika burrow density by moderating structural value and subsequently affecting nutritional value. Pika burrowing activity explains 40 % of the total variation in nutritional value. Our findings revealed an intrinsic linkage between mammal activities and alpine grassland ecosystems, which can provide guidelines for grassland management through pika population control by adjusting grazing intensity on the TP.

Preference for ground cover when selecting burrow entrances in plateau pikas

Burrow-dwelling animals such as the plateau pika (Ochotona curzoniae) often seek sturdy entrances for their burrows, which can reduce the need for frequent maintenance. The toughness of the ground surface is often reinforced by the interweaving of plant roots and often varies with the root characteristics. To better understand ground cover preferences when selecting burrow entrances by plateau pikas, we investigated the ratios of different ground covers at the rear of the entrances, as well as their coverage and underlying soil compaction in an undegraded alpine meadow on the Qinghai-Xizang Plateau. The results indicated a clear preference hierarchy of sedges > forbs > grass > bare soil. This distribution was aligned with the soil compaction hierarchy of the topsoil layer beneath each cover type. The sedge coverage was significantly negatively correlated with burrow density, suggesting that plateau pikas opt for sturdy entrances with a natural inclination toward energy conservation. However, there is consensus that the population density of plateau pikas often reaches its maximum on almost nonvegetated "black soil beaches." We hypothesized that the survival benefits brought about by vegetation degradation would be higher than the maintenance costs of burrow entrances.

Positive role of plateau pika (Ochotona coronae) on environmental quality at low and moderate density on the Tibetan plateau: Evidence from a meta-analysis

The roles of plateau pika (Ochotona coronae) in the Tibetan Plateau are often controversial, because it is often regarded as a destructive pest or an ecosystem engineer. Here a meta-analysis using 72 paired observations was conducted to examine whether the impacts of plateau pika on environmental quality (i.e., plant and soil properties) depend on population density in the Tibetan Plateau. Pika population density was used as a proxy for disturbance intensity. The pika disturbance intensity was divided into five groups based on the number of burrows, including low disturbance intensity (LD) (9-30 burrows per ha), medium disturbance intensity (MD) (31-100 burrows per ha), high disturbance intensity (HD) (101-170 burrows per ha), extreme disturbance intensity (ED) (171-240 burrows per ha) and uncontrolled (or excessive) disturbance intensity (UD) (>241 burrows per ha). Given that sample sizes in some of the groups are small (especially for the HD), we further pooled the disturbance groups including the LD-MD and HD-UD. Overall, relative to control (i.e., no disturbing), there was a great increase (80.3%) in aboveground biomass under the LD-MD, whereas a decrease of 41.1% occurred under the HD-UD. At the same time, plant coverage, species richness, height, and belowground biomass greatly decreased only in the HD-UD. Furthermore, the effect size of plant coverage, species richness, and aboveground biomass also declined with pika burrow density significantly. With regard to soil properties, there was a significant increase in soil organic carbon, ammonium nitrogen, and soil organic carbon stock under the LD-MD, whereas a decrease under the HD-UD. In addition, soil total nitrogen, total potassium, and nitrate nitrogen increased at the LD-MD and HD-UD. Nevertheless, the effect size of these soil properties (with >20 observations) was not related to pika burrow density. In summary, there is an implication that the low and moderate disturbance of pikas is beneficial to maintain and promote ecosystem functioning in the Tibetan grasslands. In the future pikas' eradication policy should be reconsidered in alpine grassland management.

Dysbiosis of Gut Microbiome Aggravated Male Infertility in Captivity of Plateau Pika

Captivity is an important and efficient technique for rescuing endangered species. However, it induces infertility, and the underlying mechanism remains obscure. This study used the plateau pika (Ochotona curzoniae) as a model to integrate physiological, metagenomic, metabolomic, and transcriptome analyses and explore whether dysbiosis of the gut microbiota induced by artificial food exacerbates infertility in captive wild animals. Results revealed that captivity significantly decreased testosterone levels and the testicle weight/body weight ratio. RNA sequencing revealed abnormal gene expression profiles in the testicles of captive animals. The microbial α-diversity and Firmicutes/Bacteroidetes ratio were drastically decreased in the captivity group. Bacteroidetes and Muribaculaceae abundance notably increased in captive pikas. Metagenomic analysis revealed that the alteration of flora increased the capacity for carbohydrate degradation in captivity. The levels of microbe metabolites' short-chain fatty acids (SCFAs) were significantly high in the captive group. Increasing SCFAs influenced the immune response of captivity plateau pikas; pro-inflammatory cytokines were upregulated in captivity. The inflammation ultimately contributed to male infertility. In addition, a positive correlation was observed between Gastranaerophilales family abundance and testosterone concentration. Our results provide evidence for the interactions between artificial food, the gut microbiota, and male infertility in pikas and benefit the application of gut microbiota interference in threatened and endangered species.

Eimeria infections of plateau pika altered the patterns of temporal alterations in gut bacterial communities

Intestinal parasites, such as Eimeria, are common among plateau pika (Ochotona curzoniae). The gut microbiome is an essential driver of the host response to gastrointestinal parasites. However, the effects of intestinal protozoal parasites on the temporal variations in the gut microbiome and behavioral and physiological activities remain unknown. Our study conducted treatments involving experimental feeding of pika with Eimeria oocysts or anticoccidia under laboratory conditions to focus on the parasite-associated alterations in gut bacterial communities, host behavioral activity, physiology, and host-bacteria relationships. The results showed insignificant differences in bacterial community structures among treatments on the basis of Bray-Curtis distance metrics, whereas the patterns of temporal alterations in the bacterial communities were changed by the treatments. Bacterial alpha diversities did not vary with the treatments, and experimental feeding with Eimeria slowed down the decrement rate of alpha diversity. Furthermore, few bacterial members were significantly changed by the treatments-only the genus Ruminococcus and the species Ruminococcus flavefaciens, which were associated with energy metabolism. Experimental feeding with Eimeria modified the temporal variations in the bacterial members, including a lower loss rate of the relative abundance of the dominant families Muribaculaceae and Ruminococcaceae in the group with Eimeria experimental feeding. Moreover, a shifting energy trade-off was suggested by the parasite-induced increments in thyroid hormones (triiodothyronine and tetraiodothyronine) and decrements in exploration behavior in the group with Eimeria feeding. However, we did not detect specific connections between gut bacterial communities and pika behaviors and physiology in terms of energy trade-offs. Further in-depth research is needed to examine the role of Eimeria-modified differences in the gut bacteria of plateau pika.

Temporal and spatial variations in body mass and thermogenic capacity associated with alterations in the gut microbiota and host transcriptome in mammalian herbivores

Most wild animals follow Bergmann's rule and grow in body size as cold stress increases. However, the underlying thermogenic strategies and their relationship with the gut microbiota have not been comprehensively elucidated. Herein, we used the plateau pikas as a model to investigate body mass, thermogenic capacity, host transcriptome, gut microbiota and metabolites collected from seven sites ranging from 3100 to 4700 m on the Qinghai-Tibetan Plateau (QTP) in summer and winter to test the seasonal thermogenesis strategy in small herbivorous mammals. The results showed that the increase in pika body mass with altitude followed Bergmann's rule in summer and an inverted parabolic shape was observed in winter. However, physiological parameters and transcriptome profiles indicated that the thermogenic capacity of pikas increased with altitude in summer and decreased with altitude in winter. The abundance of Firmicutes declined, whereas that of Bacteroidetes significantly increased with altitude in summer. Phenylalanine, tyrosine, and proline were enriched in summer, whereas carnitine and succinate were enriched in winter. Spearman's correlation analysis revealed significant positive correlations between Prevotella, Bacteroides, Ruminococcus, Alistipes and Akkermansia and metabolites of amino acids, pika physiological parameters, and transcriptome profiles. Moreover, metabolites of amino acids further showed significant positive correlations with pika physiological parameters and transcriptome profiles. Our study highlights that the changes in body mass and thermogenic capacity with altitude distinctly differentiate small herbivorous mammals between summer and winter on the QTP, and that the gut microbiota may regulate host thermogenesis through its metabolites.

Temporal and geographic distribution of gut microbial enterotypes associated with host thermogenesis characteristics in plateau pikas

IMPORTANCE

The gut microbiotas of small mammals play an important role in host energy homeostasis. However, it is still unknown whether small mammals with different enterotypes show differences in thermogenesis characteristics. Our study confirmed that plateau pikas with different bacterial enterotypes harbored distinct thermogenesis capabilities and employed various strategies against cold environments. Additionally, we also found that pikas with different fungal enterotypes may display differences in coprophagy.

Disrupted circadian rhythms in the plateau pika

The plateau pika (Ochotona curzoniae) is the most populous mammal on the 'third pole', the Qinghai-Tibet Plateau, and is presumed to have inhabited the region before the plateau rose up from sea level. Herein we discuss the disrupted circadian rhythm in the plateau pika and the gene polymorphism behind this phenotype, placing these findings in the broader context of circadian rhythms under extreme conditions.

The genomic characteristics and pathogenicity of a mammalian orthoreovirus within a new lineage from wild pika in plateau

Emerging and re-emerging viruses from wild animals have seriously threatened the health of humans and domesticated animals in recent years. Herein, we isolated a new mammalian orthoreovirus (MRV), Pika/MRV/GCCDC7/2019 (PMRV-GCCDC7), in the Qinghai-Tibet Plateau wild pika (Ochotona curzoniae). Though the PMRV-GCCDC7 shows features of a typical reovirus with ten gene segments arranged in 3:3:4 in length, the virus belongs to an independent evolutionary branch compared to other MRVs based on phylogenetic tree analysis. The results of cellular susceptibility, species tropism, and replication kinetics of PMRV-GCCDC7 indicated the virus could infect four human cell lines (A549, Huh7, HCT, and LoVo) and six non-human cell lines, including Vero-E6, LLC-MK2, BHK-21, N2a, MDCK, and RfKT cell, derived from diverse mammals, i.e. monkey, mice, canine and bat, which revealed the potential of PMRV-GCCDC7 to infect a variety of hosts. Infection of BALB/c mice with PMRV-GCCDC7 via intranasal inoculation led to relative weight loss, lung tissue damage and inflammation with the increase of virus titer, but no serious respiratory symptoms and death occurred. The characterization of the new reovirus from a plateau-based wild animal has expanded our knowledge of the host range of MRV and provided insight into its risk of trans-species transmission and zoonotic diseases.

Altitude-dependent metabolite biomarkers reveal the mechanism of plateau pika adaptation to high altitudes

The harsh environment in the Tibetan plateau, the highest place in the world, poses thermoregulatory challenges and hypoxic stress to animals. The impacts of plateau environment on animal physiology and reproduction include external factors such as strong ultraviolet radiation and low temperature, and internal factors such as animal metabolites and gut microbiota. However, it remains unclear how plateau pika adapt to high altitudes through the combination of serum metabolites and gut microbiota. To this end, we captured 24 wild plateau pikas at the altitudes of 3400, 3600, or 3800 m a.s.l. in a Tibetan alpine grassland. Using the machine learning algorithms (random forest), we identified five biomarkers of serum metabolites indicative of the altitudes, that is, dihydrotestosterone, homo-l-arginine, alpha-ketoglutaric-acid, serotonin, and threonine, which were related to body weight, reproduction, and energy metabolism of pika. Those metabolic biomarkers were positively correlated with Lachnospiraceae_ Agathobacter, Ruminococcaceae, or Prevotellaceae_Prevotella, suggesting the close relationship between metabolites and gut microbiota. By identifying the metabolic biomarkers and gut microbiota analysis, we reveal the mechanisms of adaptation to high altitudes in plateau pika.

A bibliometric analysis of research trends and hotspots in alpine grassland degradation on the Qinghai-Tibet Plateau

A bibliometric analysis of current research, hotspots, and development trends was used to develop an overall framework of mechanisms of alpine grassland degradation on the Qinghai-Tibet Plateau. This investigation includes data from 1,330 articles on alpine grassland degradation on the Qinghai-Tibet Plateau, acquired from the Chinese Science Citation Database (CSCD) and Web of Science Core Collection (WOS). Research was divided into three themes: spatial scope and management of typical grassland degradation problems, dynamic mechanisms of grassland degradation and effects of ecological engineering, and grassland degradation risk based on remote sensing technology. The results of the analysis showed that the research can be summarized into three aspects: typical grassland degradation identification, dynamic mechanism analysis of grassland degradation, and grassland ecosystem stability strategy. The main findings can summarized, as follows: (1) Ecological analyses using the river source as a typical region defined the formation of "black soil beach" type degraded grasslands in the region, and promoted the ecological environment management and protection of the alpine grassland by discussing the causes of regional ecological environment changes; (2) Dynamic mechanism analyses of climate change and characteristics analyses of grassland vegetation-soil degradation revealed that alpine grassland degradation is the result of multiple main factors; and (3) Risk prediction methods for grassland degradation, methods of grassland management and sustainable countermeasures for agriculture and animal husbandry development, and the development of a comprehensive index of influencing factors on grassland degradation all indicate that selecting the right grassland restoration measures is the key to grassland restoration. Remote sensing monitoring and high-throughput sequencing technology should be used in future research on grassland ecosystems. In addition, multiscale, multidimensional, and multidisciplinary systematic research methods and long-term series data mining could help identify the characteristics and causes of alpine grassland system degradation. These findings can help identify a more effective coordination of landscape, water, lake, field, forest, grass, and sand management for the prevention of alpine grassland degradation.

Himalayan Marmot (Marmota himalayana) Redistribution to High Latitudes under Climate Change

Climate warming and human activities impact the expansion and contraction of species distribution. The Himalayan marmot (Marmota himalayana) is a unique mammal and an ecosystem engineer in the Qinghai-Tibet Plateau (QTP). This pest aggravates grassland degradation and is a carrier and transmitter of plagues. Therefore, exploring the future distribution of Himalayan marmots based on climate change and human activities is crucial for ecosystem management, biodiversity conservation, and public health safety. Here, a maximum entropy model was explored to forecast changes in the distribution and centroid migration of the Himalayan marmot in the 2050s and 2070s. The results implied that the human footprint index (72.80%) and altitude (16.40%) were the crucial environmental factors affecting the potential distribution of Himalayan marmots, with moderately covered grassland being the preferred habitat of the Himalayan marmot. Over the next 30-50 years, the area of suitable habitat for the Himalayan marmot will increase slightly and the distribution center will shift towards higher latitudes in the northeastern part of the plateau. These results demonstrate the influence of climate change on Himalayan marmots and provide a theoretical reference for ecological management and plague monitoring.

Effect of moderate livestock grazing on soil and vegetation characteristics in zokor mounds of different ages

Mounds formed by plateau zokors (Eospalax baileyi) in alpine meadows are easily disturbed by livestock. We aimed to reveal the effect of moderate livestock grazing (from October 15 to March 15 of the following year) on plant and soil characteristics of zokor mounds. This study explored the effect of zokor mounds of different ages (2015-2018) on soil nutrient content, soil enzymatic activity, plant diversity, and aboveground biomass (AGB) at grazing and non-grazing sites. Compared with the non-grazing sites, soil organic carbon (SOC), total soil phosphorus, and ratio of SOC to total nitrogen were 16.6%-98.7% higher and soil urease activity was 8.4% and 9.6% higher in 1- and 3-year-old mounds, respectively, at the grazing sites. Grazing significantly increased the plant Pielou index, richness, and Shannon-Wiener diversity index of 4-year-old mounds by 20.7%-52.4%. Partial least squares path modeling showed that plant species diversity was the main factor affecting the plant AGB of mounds at the grazing sites, whereas soil enzyme activity was the primary factor at the non-grazing sites. We propose that moderate grazing increases soil nutrient content and the plant diversity in zokor mounds in alpine meadows, which should be considered in future grassland restoration.

Daily and Seasonal Activity Patterns of Plateau Pikas (Ochotona curzoniae) on the Qinghai-Tibet Plateau, China, and Their Relationship with Weather Condition

Exploring the activity patterns of small mammals is important for understanding the survival strategies of these animals, such as foraging and mating. The purpose of the present study was to determine the activity of free-living plateau pikas (Ochotona curzoniae) in different months and seasons (cold and warm seasons), with a particular emphasis on the effects of weather condition. Based on a camera-trapping survey conducted from October 2017 to September 2018, we evaluated the activity patterns and activity levels of plateau pikas inhabiting the eastern Qinghai-Tibet Plateau in China. The effects of environmental factors on the activity of plateau pikas were examined using the generalized additive mixed model (GAMM). The results showed that: (1) The plateau pikas exhibited unimodal patterns of activity during the cold season (October-April). During the warm season (May-September), the activity patterns of the plateau pikas were bimodal. Their activity levels were highest in June. (2) During the cold season, their activity levels rose gradually over the course of the day to a peak near noon, and they were not significantly higher after sunrise than they were before sunset. During the warm season, their activity peaks were in the morning and afternoon, and their activity levels were substantially lower after sunrise than they were before sunset. (3) The plateau pikas were more active under conditions with lower ambient temperatures and precipitation during the cold and warm seasons. While relative air humidity was positively correlated with the activity of the plateau pikas during the warm season, wind speed was negatively correlated with the pikas' activity during the cold season. Overall, these results collectively indicate that plateau pikas occupy habitats with cool and less windy microclimates during the cold season, and with cool and moist microclimates during the warm season. Information on the time allocation of pikas' activity levels during different seasons should provide a baseline for understanding their potential for adaptation to climate change.

Group-living decrease predation risk of individual: Evidence from behavior, hormones and reproduction of plateau pika

Extensive research confirms that abiotic stressors like predation risk can profoundly affect animal condition. However, there is a lack of experimental research assessing the suite of physiological responses to risk. We increased predation risk in free-living plateau pikas (Ochotona curzoniae) by simulating natural chases using a model predator (UAV: unmanned aerial vehicle) and monitored behavior, physiology, and reproduction of pikas. We found that: Predation risk affects the body weight of plateau pika under different population density stress, but the effect is not significant. Compared with the non-predation risk treatment (control), the plateau pika under high population density stress mainly responded to the risk of predation by reducing the foraging time and increasing the vigilance time, while plateau pikas under low population density pressure not only reduce foraging time and appropriately increase vigilance time, but also focus on increasing the concealing time in the burrows. The corticosterone (CORT), cortisol and thyroid (T4) level of plateau pika with low population density under the predation risk was significantly higher than those in the control, and the testosterone (T), progesterone (PROG), leptin (LEP) and testicular weight of plateau pika with low population density in the predation risk was significantly lower than those in the control. There was no difference in the litter size of female pika between predation risk treatments and control. Broadly, our result show that predation risk had significant effects on the behavior, physiology and reproduction of plateau pikas with low population density, but had no significant effect with high population density, and the response of male plateau pika to predation risk was greater than that of female. Therefore, the prevention of plateau pika should focus on the control of population density and the protection of predators, so as to avoid the failure of ecological prevention methods such as natural enemies due to the increase of population density.

Food webs reveal coexistence mechanisms and community organization in carnivores

Globally, massive carnivore guild extirpations have led to trophic downgrading and compromised ecosystem services. However, the complexity of multi-carnivore food webs complicates accurate identification of species interactions and community organization. Here, we used fecal DNA metabarcoding to investigate three communities that together encompass eight large- and meso-carnivore species and their 44 prey taxa of the Qinghai-Tibet Plateau (QTP), one of the last places on Earth that still harbors intact carnivore assemblages. Quantitative food-web analyses revealed pronounced interspecific variations in the carnivores' prey compositions and dietary partitioning both between and within guilds. Additionally, body masses of the carnivores and their prey exhibited consistent hump-shaped correlations across communities. Overall, differences in prey diversity, size category, and proportional utilization among the carnivore species result in trophic niche segregation that likely promotes carnivore coexistence in the harsh QTP environment. Network structure analyses detected significant modularity in all food webs but nestedness in only one. Furthermore, network characterization identified pikas (Ochotona spp.), bharal (Pseudois nayaur), and domestic yak (Bos grunniens) as potential keystone prey across the areas. Our results paint a holistic and detailed picture of the QTP carnivore assemblages' trophic networks and demonstrate that the combined use of the molecular dietary approach and network analysis can generate structural insights into carnivore coexistence and can identify functionally important species in complex communities. Such knowledge can help safeguard carnivore guild integrity and enhance community resilience to environmental perturbations in the sensitive QTP ecosystems.

Phylogeography of the Plateau Pika (Ochotona curzoniae) in Response to the Uplift of the Qinghai-Tibet Plateau

The evolution and current distribution of species on the Qinghai-Tibet Plateau have been significantly impacted by historical occurrences, including the uplift of the plateau and the Quaternary climate upheaval. As a remnant species, the plateau pika (Ochotona curzoniae) is a great model for researching historical events. In this study, 302 samples from 42 sample sites were utilized to analyze the impact of historical events on the evolution and distribution pattern of plateau pikas. The genetic diversity, patterns of differentiation, and historical dynamics of the plateau pika were investigated using molecular markers that included four mitochondrial genes (COI, D-loop, Cytb, and 12S rRNA) and three nuclear genes (GHR, IRBP, and RAG1). The results showed that: (1) The genetic diversity of the plateau pika was high in the Tibetan Plateau (Hd = 0.9997, π = 0.01205), and the plateau pika evolved into five lineages that occupied different geographical areas, with lineage 1 (Group 1) in the south of the Yarlung Zangbo River, lineage 2 (Group 2) in the hinterland of the plateau, lineage 3 (Group 3) in the northeastern part of the plateau, lineage 4 (Group 4) in the Hengduan Mountains, and lineage 5 (Group 5) in the eastern part of the plateau. (2) The gene flow among the five lineages was low, and the differentiation level was high (Nm < 0.25; Fst > 0.25), indicating that the geographical barriers between the five lineages, such as the Yarlung Zangbo River, the Qaidam-Ghuong-Guide Basin, and the Lancang River, effectively promoted the population differentiation of the plateau pika. (3) The plateau pika first spread from the Hengduan Mountains to the entire Qinghai-Tibet Plateau and then conducted small-scale migration and dispersal in several refuges across the plateau in response to climate changes during the glacial and interglacial periods. (4) Except for Group 1 and Group 4, all the other populations exhibited a rapid expansion between 0.06 and 0.01 Mya, but the expansion was considerably delayed or halted by the effects of climate change during the last glacial maximum (0.02 Mya). Overall, the plateau pika on the Qinghai-Tibet Plateau exhibits high genetic diversity, and topographic obstacles, including mountains, valleys, and basins, created by the uplift of the plateau and climatic changes since the Quaternary period have played an important role in the differentiation and historical dynamics of the plateau pika population.

The pikas of China: a review of current research priorities and challenges for conservation

Of the approximately 30 extant species of pika (Ochotona; Ochotonidae; Lagomorpha), at least 23 occur in China. Of these, 8 are endemic, and 3 are classified as Endangered by the IUCN. Research into most Chinese species is scarce, and there is much to learn about basic aspects of their ecology. We reviewed the literature on the 23 Chinese Ochotona species, with the aim of highlighting knowledge gaps and biases in research allocation. Specifically, we identify (1) which pika species receive the most attention from researchers, (2) which topics are the most frequently studied, and (3) how well research satisfies conservation priorities. We covered a total of 879 articles, most of which were written in English or Chinese. Around 75% of all publications focused on the plateau pika Ochotona curzoniae. Seven species were represented by 10 or fewer publications each. Endangered and endemic species were particularly poorly represented. 204 papers treated pikas as a pest, while 13 studied conservation issues. Nine species were considered possible targets for pest control, including some poorly known endemics. We make some recommendations on how research into Chinese Ochotona could be improved, including: (1) recognizing that the current species-level taxonomy may be an ineffective way to prioritize conservation research in Ochotona, (2) directing more research toward threatened and endemic species, subspecies, and populations, (3) researching the ecosystem engineering effects of pikas, (4) collecting basic data on natural history of the many understudied species, and (5) researching threats, including climate change and pest control campaigns.

Impact of plateau pika burrowing activity on the grass/sedge ratio in alpine sedge meadows in China

INTRODUCTION

Burrowing activities of plateau pikas cause widespread bare patches in alpine meadows on the Qinghai-Tibet Plateau, affecting the plant community composition and forage production. However, it is not clear how these bare patches influence the main forage composition in alpine meadows.

METHODS

Therefore, we investigated the plant communities in bare patches (BP) and neighboring control plots (CK) in alpine meadows in Maqu county in the Gannan region of China.

RESULTS

Our results showed that plant communities in the CK plots differed from those in the BP plots. The sedge cover, number of sedge species and number of grass species were all significantly higher in the CK plots compared to the BP plots. However, grass cover and its dry weight were significantly higher in the BP plots. Grass cover and the grass dry weight in the BP plots were 1.859 times and 1.802 times higher than that in the CK plots across the five sites, respectively. Grasses also had a significantly higher cover and dry weight than sedge in the BP plots, grass cover was 66.5 times higher than the sedge cover, and the grass dry weight was 68.242 times that of the sedge dry weight. Therefore, bare patches resulting from plateau pika burrowing activity significantly increase the grass/sedge ratio in alpine meadows.

DISCUSSION

A potential explanation is that grasses have a stronger reproductive potential than sedges in bare soil. This has implications for pasture yields since grasses have a higher biomass per unit area compared to sedges in alpine meadows.

Anthropogenic disturbance promotes the diversification of antibiotic resistance genes and virulence factors in the gut of plateau pikas (Ochotona curzoniae)

The prevalence and transmission of antibiotic resistance genes (ARGs) and virulence factors (VFs) pose a great threat to public health. The importance of pollution in determining the occurrence of ARGs and VFs in wildlife is poorly understood. Using a metagenomic approach, this study investigates the composition and functional pathways of bacteria, ARGs, and VFs in the gut microbiome of Plateau pikas in regions of medical pollution (MPR), heavy tourist traffic (HTR), and no contamination (NCR). We found that the abundance of probiotic genera (Clostridium, Eubacterium, Faecalibacterium, and Roseburia) were significantly lower in the HTR. The metabolic pathways of replication and repair in the endocrine and nervous systems were significantly enriched in the MPR, whereas endocrine and metabolic diseases were significantly enriched in the NCR. The Shannon and Gini–Simpson α-diversity indices of ARGs were highest in the HTR, and there were significant differences in β-diversity among the three regions. The resistance of ARGs to glycopeptide antibiotics increased significantly in the MPR, whereas the ARGs for aminocoumarins increased significantly in the HTR. The diversity of mobile genetic elements (MGEs) was significantly higher in the MPR than in other regions. We observed a strong positive correlation between ARGs and pathogenic bacteria, and the network structure was the most complex in the MPR. There were significant differences in the β-diversity of VFs among the three regions. Medical pollution led to significant enrichment of fibronectin-binding protein and PhoP, whereas tourism-related pollution (in the HTR) led to significant enrichment of LPS and LplA1. Our study indicates that environmental pollution can affect the structure and function of gut microbes and disseminate ARGs and VFs via horizontal transmission, thereby posing a threat to the health of wild animals.

Transcriptome analysis of pika heart tissue reveals mechanisms underlying the adaptation of a keystone species on the roof of the world

High-altitude environments impose intense stresses on living organisms and drive striking phenotypic and genetic adaptations, such as hypoxia resistance, cold tolerance, and increases in metabolic capacity and body mass. As one of the most successful and dominant mammals on the Qinghai-Tibetan Plateau (QHTP), the plateau pika (Ochotona curzoniae) has adapted to the extreme environments of the highest altitudes of this region and exhibits tolerance to cold and hypoxia, in contrast to closely related species that inhabit the peripheral alpine bush or forests. To explore the potential genetic mechanisms underlying the adaptation of O. curzoniae to a high-altitude environment, we sequenced the heart tissue transcriptomes of adult plateau pikas (comparing specimens from sites at two different altitudes) and Gansu pikas (O. cansus). Differential expression analysis and weighted gene co-expression network analysis (WGCNA) were used to identify differentially expressed genes (DEGs) and their primary functions. Key genes and pathways related to high-altitude adaptation were identified. In addition to the biological processes of signal transduction, energy metabolism and material transport, the identified plateau pika genes were mainly enriched in biological pathways such as the negative regulation of smooth muscle cell proliferation, the apoptosis signalling pathway, the cellular response to DNA damage stimulus, and ossification involved in bone maturation and heart development. Our results showed that the plateau pika has adapted to the extreme environments of the QHTP via protection against cardiomyopathy, tissue structure alterations and improvements in the blood circulation system and energy metabolism. These adaptations shed light on how pikas thrive on the roof of the world.

Corpse decay of wild animals leads to the divergent succession of nrfA-type microbial communities

Animal carcasses introduce large amounts of nitrates and ammonium into the soil ecosystem. Some of this ammonium is transformed from nitrite through the nrfA-type microbial community. However, it is unclear how nrfA-type microorganisms respond to the decomposition of corpses. This study applied high-throughput sequencing to characterize the ecological succession of nrfA-type microbial communities in grassland soil. Our results showed that Cyclobacterium and Trueperella were the predominant genera for nrfA-type communities in soil with a decomposing corpse (experimental group), while Cyclobacterium and Archangium were dominant in soil without a corpse (control group). The alpha diversity indexes and the resistance and resilience indexes of the microbial communities initially increased and then decreased during decomposition. Compared with the control group, nrfA-encoding community structure in the experimental group gradually became divergent with succession and temporal turnover accelerated. Network analysis revealed that the microbial communities of the experimental group had more complex interactions than those of the control groups. Moreover, the bacterial community assembly in the experimental group was governed by stochastic processes, and the communities of the experimental group had a weaker dispersal capacity than those of the control group. Our results reveal the succession patterns of the nrfA-type microbial communities during degradation of wild animal corpses, which can offer references for demonstrating the ecological mechanism underlying the changes in the nrfA-type microbial community during carcass decay. KEY POINTS: • Corpse decay accelerates the temporal turnover of the nrfA-type community in soil. • Corpse decay changes the ecological succession of the nrfA-type community in soil. • Corpse decay leads to a complex co-occurrence pattern of the nrfA-type community in soil.

A highland-adaptation mutation of the Epas1 protein increases its stability and disrupts the circadian clock in the plateau pika

The Qinghai-Tibet Plateau (QTP) harbors hundreds of species well adapted to its extreme conditions, including its low-oxygen (hypoxic) atmosphere. Here, we show that the plateau pika-a keystone mammal of the QTP-lacks robust circadian rhythms. The major form of the plateau pika Epas1 protein includes a 24-residue insert caused by a point mutation at the 5' juncture site of Intron14 and is more stable than other mammalian orthologs. Biochemical studies reveal that an Epas1-Bmal1 complex with lower trans-activation activity occupies the E1/E2 motifs at the promoter of the core-clock gene Per2, thus explaining how an Epas1 mutation-selected in the hypoxic conditions of the QTP-disrupts the molecular clockwork. Importantly, experiments with hypoxic chambers show that mice expressing the plateau pika Epas1 ortholog in their suprachiasmatic nucleus have dysregulated central clocks, and pika Epas1 knockin mice reared in hypoxic conditions exhibit dramatically reduced heart damage compared with wild-type animals.

Small Semi-Fossorial Herbivores Affect the Allocation of Above- and Below-Ground Plant Biomass in Alpine Meadows

Small semi-fossorial herbivores can affect plant aboveground biomass (AGB) in grasslands and possibly alter the allocation of AGB and belowground biomass (BGB). In this study, plateau pika (Ochotona curzoniae) was used to investigate such effects at three alpine meadow sites on the Eastern Tibetan Plateau, where pairs of disturbed vs. undisturbed plots were randomly selected and sampled. We also explored the relationships between soil properties and BGB/AGB across the plots in the presence and absence of plateau pikas, respectively. We found that BGB and BGB/AGB were 11.40 and 8.20% lower in the presence of plateau pikas than in their absence, respectively. We also found that the BGB/AGB was positively related to soil moisture and soil total nitrogen (STN) in the absence of plateau pikas. In contrast, BGB/AGB was positively related to STN, soil organic carbon (SOC), soil carbon/nitrogen (C/N), and soil total phosphorus in the presence of plateau pikas. These factors indicated plateau pika disturbance increased AGB allocation. The relationship between AGB and BGB of alpine meadow plants to soil variables was also different between sites with and without plateau pika disturbance. In conclusion, small semi-fossorial herbivore disturbance is likely to alter grassland carbon stock and should be well controlled for sustainable conservation and management of alpine meadows on the Tibetan Plateau.

Seasonal variations in the composition and functional profiles of gut microbiota reflect dietary changes in plateau pikas

Seasonal variations in gut microbiota of small mammals and how it is influenced by environmental variables is relatively poorly understood. We sampled 162 wild plateau pikas (Ochotona curzoniae) in four seasons over two and a half years and recorded the air temperature, precipitation, and nutrient content in edible vegetation at the sampling site. After conducting 16S rRNA and shotgun metagenomic sequencing, we found that the highest alpha diversity, the relative abundance of Firmicutes, and the simplest co-occurrence network occurred in winter, whereas that the highest relative abundance of Proteobacteria and the most complex network structure was observed in spring. The highest relative abundance of Verrucomicrobiota and Spirochaetota were seen in summer and autumn, respectively. Air temperature, precipitation, and the contents of crude protein, crude fiber, and polysaccharide in vegetation had significant effects on the seasonal changes in gut microbiota. Diet contributed more to microbial variation than climatic factors. Metagenomic analysis revealed that the amino acid metabolism pathway and axillary activity enzymes were most abundant in summer, while abundance of carbohydrate-binding modules and carbohydrate esterases were highest in spring. These microbial variations were related to the changes in dietary nutrition, indicating that gut microbiota of plateau pika contribute to the efficient use of food resources. This study provides new evidence of how external environmental factors affect the intestinal environment of small mammals. This article is protected by copyright. All rights reserved.

Metagenomic Comparisons between Soft and Hard Feces of Plateau Pikas (Ochotona curzoniae)

Simple Summary

Plateau pika produces hard and soft feces with different morphology, component and microbial structure. Hard feces had more abundant Firmicutes, while soft feces had more abundant Akkermansia. The differences of microbial communities between hard and soft feces were mainly driven by core microbomes. Soft feces had a comprehensive advances in predict functional pathways compared to hard feces, these strengthened functional pathways were closely associated with metabolism of energy, vitamins, and amino acid. Our study preliminarily explored the differences in microbial structure and function between hard and soft feces, provided a foundation for future systematic explorations of the cecotrophy.

Abstract

The division of hard and soft feces is an effective digestion strategy in the order Lagomorpha. Although previous studies have reported that hard and soft feces differ in morphology and component, the discrepancy in the microbiome remains unclear. This study explored the microbiomes of hard and soft feces in plateau pikas by sequencing the V3 and V4 regions of 16S rDNA. We found that hard feces harbored higher Firmicutes, while soft feces harbored higher Akkermansia. Increased rare bacterial taxa were observed in hard feces compared with soft feces. Moreover, hard and soft feces displayed a greater difference in terms of core operational taxonomy units (OTUs) compared to the total OTUs. The soft feces showed enhancements in all predicted Kyoto Encyclopedia of Genes and Genomes (KEGG) functions, indicating an advancing microbial metabolism compared to hard feces. The significantly upregulated pathways in soft feces were mainly enriched in metabolism of energy and carbohydrate, glycan biosynthesis, cofactors and vitamins, and amino acids—all of which are associated with increased contents of microbial proteins, vitamins, and short-chain fatty acids. Our study reports, for the first time, the differential microbiomes between hard and soft feces of pikas and provides direction for the future studies on cecotrophy.

Habitat characteristics and life history explain reproductive seasonality in lagomorphs

Lagomorphs show extensive seasonal variation in their reproduction. However, the factors causing this large variation have so far mostly been investigated intraspecifically and therefore provide only some exemplary comparisons of lagomorph reproductive seasonality. The present study applies both a categorical description (birth season categories 1–5) and a quantitative measure (birth season length in months) to summarize the degree of birth seasonality in the wild of 69 lagomorph species. Using a comparative approach, I tested the influence of 13 factors, comprising six habitat, five life history and two allometric variables on birth season length in lagomorphs. Leporids mainly show non-seasonal birthing patterns with high intraspecific variation. Their opportunistic breeding strategy with high reproductive output and their large distribution areas across wide latitude and elevation ranges might be the reasons for this finding. Ochotonids reproduce strictly seasonally, likely because they live at northern latitudes, are high-altitude specialists, and occur in limited distribution areas. The most important factors associated with variation in lagomorph birth seasonality are mid-latitude, mean annual temperature and precipitation of a species’ geographical range and life history adaptations including fewer but larger litters in seasonal habitats. Birth seasons become shorter with increasing latitude, colder temperatures, and less precipitation, corresponding to the decreasing length of optimal environmental conditions. Leporid species with shorter breeding seasons force maternal resources into few large litters to maximise reproductive output while circumstances are favourable. Since allometric variables were only weakly associated with reproductive seasonality, life history adaptations and habitat characteristics determine birth seasonality in Lagomorpha.

Effects of Plateau Pika Disturbance on the Spatial Heterogeneity of Vegetation in Alpine Meadows

Herbivory is one of the important factors that influence spatial heterogeneity of vegetation in grasslands. In this study, we focused on plateau pika (Ochotona curzoniae) to investigate the effects of the presence of small semi-fossorial herbivores and their disturbance intensity on the spatial heterogeneity of vegetation in alpine meadows across three sites in the Qinghai-Tibetan Plateau. A random stratified paired sampling method was used to collect vegetation data, and plant species richness at both fine and coarse scales were used to estimate the spatial heterogeneity of vegetation. This study showed that the presence of plateau pikas led to higher spatial heterogeneity of vegetation in alpine meadows, which increased linearly as the disturbance intensities of plateau pikas increased. The findings of this study demonstrate that small semi-fossorial herbivores have an important impact on the spatial heterogeneity of vegetation, and present a possible approach for estimating the effect of the presence of a small semi-fossorial herbivore and its disturbance intensity on the spatial heterogeneity of vegetation in grasslands.

Characterization of the spatial distribution of plateau pika burrows along an alpine grassland degradation gradient on the Qinghai-Tibet Plateau

Plateau pika burrows are common feature of degraded grassland in the Qinghai-Tibet Plateau (QTP) and serve as an important indicator of pika activity and grassland degradation. However, the current understanding of the spatial pattern changes of pika burrows and their critical thresholds across a degradation gradient in alpine grassland is deficient. In this study, we investigated and quantified changes in the spatial pattern of plateau pika burrows under typical degraded alpine shrub meadows in the northeastern QTP using an unmanned aerial vehicle and landscape pattern metrics. The degradation of the alpine shrub meadow leads to a change in landscape pattern from a two-layered structure of alpine shrub and alpine meadow to a mosaic of alpine meadow and bare soil, with plateau pika burrows scattered throughout. Moderate degradation is the tipping point for changes in surface landscape patterns, followed by the disappearance of alpine shrub, the retreat of alpine meadows and the encroachment of bare soil, and the increasing density and size of pika burrows. The area characteristics of alpine meadows have influenced changes in the spatial pattern of pika burrow, and maintaining its proportional area is a vital measure to control the threat of pika burrows to pastures. The results of this paper provide a methodological reference and guidance for the sustainable utilization of grassland on the QTP.

The distribution and behavioral characteristics of plateau pikas (Ochotonacurzoniae)

Plateau pikas (Ochotonacurzoniae) are regarded as one of the main causes of the degradation of alpine meadows in the Qinghai-Tibet Plateau (QTP). The population density of plateau pikas is directly related to the degree of grassland damage. In this study, field observation was conducted for one week in the southeastern QTP in August 2019. A random encounter model (REM) was used to estimate the population density of plateau pikas from photographs and videos, and the frequencies of different behaviors were calculated. In addition, the effects of water-source distance and terrain on the distribution of plateau pikas and the frequencies of different pika behaviors under different population densities were explored. The observations and knowledge derived from this study provide a reference for the population control of plateau pikas.

Sympatric Yaks and Plateau Pikas Promote Microbial Diversity and Similarity by the Mutual Utilization of Gut Microbiota

Interactions between species provide the basis for understanding coexisting mechanisms. The plateau pika (Ochotona curzoniae) and the yak (Bos grunniens) are considered competitors because they have shared habitats and consumed similar food on the Qinghai–Tibetan Plateau for more than 1 million years. Interestingly, the population density of plateau pikas increases with yak population expansion and subsequent overgrazing. To reveal the underlying mechanism, we sequenced the fecal microbial 16S rDNA from both sympatric and allopatric pikas and yaks. Our results indicated that sympatry increased both gut microbial diversity and similarity between pikas and yaks. The abundance of Firmicutes, Proteobacteria, Cyanobacteria, and Tenericutes decreased, while that of Verrucomicrobia increased in sympatric pikas. As for sympatric yaks, Firmicutes, Bacteroidetes, and Spirochaetes significantly increased, while Cyanobacteria, Euryarchaeota, and Verrucomicrobia significantly decreased. In sympatry, plateau pikas acquired 2692 OTUs from yaks, and yaks obtained 453 OTUs from pikas. The predominant horizontally transmitted bacteria were Firmicutes, Bacteroidetes, Verrucomicrobia, and Proteobacteria. These bacteria enhanced the enrichment of pathways related to prebiotics and immunity for pikas, such as heparin sulfate, heparin, chitin disaccharide, chondroitin-sulfate-ABC, and chondroitin-AC degradation pathways. In yaks, the horizontally transmitted bacteria enhanced pathways related to hepatoprotection, xenobiotic biodegradation, and detoxification. Our results suggest that horizontal transmission is a process of selection, and pikas and yaks tend to develop reciprocity through the horizontal transmission of gut microbiota.

The plant secondary compound swainsonine reshapes gut microbiota in plateau pikas (Ochotona curzoniae)

Abstract

Plants produce various plant secondary compounds (PSCs) to deter the foraging of herbivorous mammals. However, little is known about whether PSCs can reshape gut microbiota and promote gut homeostasis of hosts. Using 16S rDNA sequencing to investigate the effects of PSCs on the gut microbiota of small herbivorous mammals, we studied plateau pikas (Ochotona curzoniae) fed diets containing swainsonine (SW) extracted from Oxytropis ochrocephala. Our results showed that both long- and short-term treatment of a single artificial diet in the laboratory significantly reduced alpha diversity and significantly affected beta diversity, core bacteria abundance, and bacterial functions in pikas. After SW was added to the artificial diet, the alpha diversity significantly increased in the long-term treatment, and core bacteria (e.g., Akkermansiaceae) with altered relative abundances in the two treatments showed no significant difference compared with pikas in the wild. The complexity of the co-occurrence network structure was reduced in the artificial diet, but it increased after SW was added in both treatments. Further, the abundances of bacteria related to altered alanine, aspartate, and glutamate metabolism in the artificial diet were restored in response to SW. SW further decreased the concentration of short-chain fatty acids (SCFAs) in both treatments. Our results suggest that PSCs play a key role in regulating gut microbiota community and intestinal homeostasis, thereby maintaining host health.

Key points

• Swainsonine improves the intestinal bacterial diversity of plateau pikas.

• Swainsonine promotes the recovery of core bacterial abundances in the gut of plateau pikas.

• Swainsonine promotes the restoration of intestinal bacterial functions of plateau pikas.

Supplementary Information

The online version contains supplementary material available at 10.1007/s00253-021-11478-6.

A density estimation model of plateau pika (Ochotona curzoniae) supporting camera-monitoring programs

As an important species in the Qinghai-Tibet Plateau, the roles played by plateau pikas in grassland degradation and protection are controversial. The behavior characteristics and population density of this species are important in answering this question, but these traits have not been fully elucidated to date. Camera-capture methods have been used widely in recent years to characterize or calculate population density with the advantage of simple operation and nonintrusive investigation. However, establishing the relationship between actual population density and monitoring data with the condition that individual identification is not possible is a major challenge for this method. In this study, a model composed of a behavioral module and a burrow system module is proposed and applied to simulate the moving path of each individual pika. Based on Monte Carlo method, the model is used to develop the relationship between population density and recorded capture number, which is compared with the results derived from the random encounter model (REM) based on field observations. The simulated results mixed with the calculated density based on observation data could reach R 2 = 0.98 using linear fitting, with proper parameter settings. A novel index named activity intensity of pikas per population density is also proposed, providing information on both the ecological physical characteristics and monitoring space. The influence of different parameters on this index, mainly the pika number per burrow system, pika activity time outside the burrow, and activity intensity, is discussed. The proposed methodology can be applied to different scenarios in further studies when behavioral characteristics of pikas change for such reasons as climate change and vegetation degradation.

Surviving winter on the Qinghai-Tibetan Plateau: Pikas suppress energy demands and exploit yak feces to survive winter

The Qinghai-Tibetan Plateau, with low precipitation, low oxygen partial pressure, and temperatures routinely dropping below -30 °C in winter, presents several physiological challenges to its fauna. Yet it is home to many endemic mammalian species, including the plateau pika (Ochotona curzoniae). How these small animals that are incapable of hibernation survive the winter is an enigma. Measurements of daily energy expenditure (DEE) using the doubly labeled water method show that pikas suppress their DEE during winter. At the same body weight, pikas in winter expend 29.7% less than in summer, despite ambient temperatures being approximately 25 °C lower. Combined with resting metabolic rates (RMRs), this gives them an exceptionally low metabolic scope in winter (DEE/RMRt = 1.60 ± 0.30; RMRt is resting metabolic rate at thermoneutrality). Using implanted body temperature loggers and filming in the wild, we show that this is achieved by reducing body temperature and physical activity. Thyroid hormone (T₃ and T₄) measurements indicate this metabolic suppression is probably mediated via the thyroid axis. Winter activity was lower at sites where domestic yak (Bos grunniens) densities were higher. Pikas supplement their food intake at these sites by eating yak feces, demonstrated by direct observation, identification of yak DNA in pika stomach contents, and greater convergence in the yak/pika microbiotas in winter. This interspecific coprophagy allows pikas to thrive where yak are abundant and partially explains why pika densities are higher where domestic yak, their supposed direct competitors for food, are more abundant.

Environment and host species identity shape gut microbiota diversity in sympatric herbivorous mammals

The previous studies have reported that the mammalian gut microbiota is a physiological consequence; nonetheless, the factors influencing its composition and function remain unclear. In this study, to evaluate the contributions of the host and environment to the gut microbiota, we conducted a sequencing analysis of 16S rDNA and shotgun metagenomic DNA from plateau pikas and yaks, two sympatric herbivorous mammals, and further compared the sequences in summer and winter. The results revealed that both pikas and yaks harboured considerably more distinct communities between summer and winter. We detected the over-representation of Verrucomicrobia and Proteobacteria in pikas, and Archaea and Bacteroidetes in yaks. Firmicutes and Actinobacteria, associated with energy-efficient acquisition, significantly enriched in winter. The diversity of the microbial community was determined by the interactive effects between the host and season. Metagenomic analysis revealed that methane-metabolism-related pathway of yaks was significantly enriched in summer, while some pathogenic pathways were more abundant in pikas. Both pikas and yaks had a higher capacity for lipid degradation in winter. Pika and yak shared more OTUs when food shortage occurred in winter, and this caused a convergence in gut microbial composition and function. From winter to summer, the network module number increased from one to five in pikas, which was different in yaks. Our study demonstrates that the host is a dominant factor in shaping the microbial communities and that seasonality promotes divergence or convergence based on dietary quality across host species identity.

Genetic Evolution and Implications of the Mitochondrial Genomes of Two Newly Identified Taenia spp. in Rodents From Qinghai-Tibet Plateau

The larva of Taeniidae species can infect a wide range of mammals, causing major public health and food safety hazards worldwide. The Qinghai-Tibet Plateau (QTP), a biodiversity hotspot, is home to many species of rodents, which act as the critical intermediate hosts of many Taeniidae species. In this study, we identified two new larvae of Taenia spp., named T. caixuepengi and T. tianguangfui, collected from the plateau pika (Ochotona curzoniae) and the Qinghai vole (Neodon fuscus), respectively, in QTP, and their mitochondrial genomes were sequenced and annotated. Phylogenetic trees based on the mitochondrial genome showed that T. caixuepengi has the closest genetic relationship with T. pisiformis, while T. tianguangfui was contained in a monophyletic group with T. crassiceps, T. twitchelli, and T. martis. Biogeographic scenarios analysis based on split time speculated that the speciation of T. caixuepengi (∼5.49 Mya) is due to host switching caused by the evolution of its intermediate host. Although the reason for T. tianguangfui (∼13.11 Mya) speciation is not clear, the analysis suggests that it should be infective to a variety of other rodents following the evolutionary divergence time of its intermediate host and the range of intermediate hosts of its genetically close species. This study confirms the species diversity of Taeniidae in the QTP, and speculates that the uplift of the QTP has not only a profound impact on the biodiversity of plants and animals, but also that of parasites.

A comparison of density estimation methods in plateau pika populations in an alpine meadow ecosystem

Plateau pikas are a keystone species and ecosystem engineers in alpine meadow ecosystems. A number of surveying methods have been used to estimate pika density, but the reliability of these methods is not known. In addition, better population density methodologies allow for more reliable density estimates. We therefore compared the relationship among several commonly used methods of estimating pika relative density and the absolute density (AD) of pika populations. This relationship was investigated in summer and winter pastures to determine whether distribution pattern of the pikas (patchy or uniform) would influence this relationship. During August of 2015 and August of 2016, we measured the relative and absolute population density of pikas in an alpine meadow in the County, Gansu province, northwestern China. Relative density was measured with three indirect and direct methods: the total burrow density (TBD), the active burrow density (ABD), and the direct counting density (DCD) at the peak of pika activity. AD was assessed by removal sampling. Our results showed that the relative population density with all three survey methods was significantly related to the absolute population density. In particular, DCD at the peak of the pika activity showed the best correlation with AD. A simple linear model showed the effect of grazing time by livestock had a significant effect on TBD and ABD. These results imply that using DCD as a method to survey at the peak of the pika activity is more reliable than other methods.

Modeling the Spatial Distribution of Plateau Pika (Ochotona curzoniae) in the Qinghai Lake Basin, China

The plateau pika (Ochotona curzoniae) is a keystone species in the alpine rangeland ecosystem of the Qinghai-Tibetan Plateau. Most previous studies of habitat selection by plateau pika have been conducted at a local microhabitat scale; however, little is known about the relationship between the distribution of plateau pika and macrohabitat factors at broad spatial scales. Using a presence-only ecological niche model (maximum entropy, Maxent), we predicted the distribution of plateau pika in the Qinghai Lake basin based on a set of environmental and anthropogenic variables at 1-km spatial resolution, and identified key macrohabitat factors that contribute to the predictive performance. Our results showed suitable area for plateau pika in the Qinghai Lake basin being approximately 3982 km2, which is 15.8% of the land area in the whole watershed. The distance to road emerged as the most important predictor of the distribution patterns of plateau pika, while the soil type was of ancillary importance. Mean air temperature of wettest quarter, distance to resident site and altitude also produced high gains in defining plateau pika's distribution. A higher predictive accuracy was achieved by the model that combined environmental and anthropogenic variables. With the constraint of human factors, the presence probability of plateau pika in about 1661 km2 will increase. These findings demonstrate the impact of human activities on the distribution of plateau pika, and the importance of vegetation reservation for plateau pika control.

Microhabitat use by plateau pikas: living on the edge

Mammals rely on habitat resources for survival and reproduction. We studied microhabitats used by plateau pikas (Ochotona curzoniae) of the Qinghai-Tibetan Plateau. Microhabitat features used by pikas include sedge meadows that provide forage, burrows that provide safety from predators and cover for nests, degraded open-dirt patches, and edges between sedge meadow and open dirt patches that often have a “lip” between those microhabitats. We investigated the extent to which these edges might serve as a preferred pika microhabitat. GIS techniques were used to overlay individual pika home ranges, determined by focal and scan sampling, on a digitized map containing microhabitat features. Regions that contained multiple coinciding individual home ranges, referred to as overlap polygons, were categorized numerically based on the number of individual home ranges that overlapped each polygon. These overlap polygons were used as relative measures of pika activity. We tested the spatial relationship between pika activity and the microhabitat features of edges, burrows, and proportional area of sedge. There was a significant relationship between the number of pikas in an overlap polygon and the number of pikas in an adjacent polygon. This pattern was controlled statistically to test whether activity was influenced by the presence of potentially favorable microhabitat features. Most of the variation in number of pikas that overlapped a habitat polygon was associated with the relative amount of “edge microhabitat” between sedge meadow and degraded open dirt patches (Cohen’s effect size, f2 = 0.91). Neither burrow openings nor sedge had a strong influence on the number of pika home ranges that overlapped. The importance of microhabitat edges appeared high for plateau pikas.

Impact of plateau pikas (Ochotona curzoniae) on soil properties and nitrous oxide fluxes on the Qinghai-Tibetan Plateau

This paper demonstrates the impact of an endemic fossorial animal, plateau pika (Ochotona curzoniae), on soil properties and N₂O flux at the Zoige Wetland. Pika burrow and control sites without disturbance by pika were selected to measure the soil water content, bulk density, soil organic matter (SOM), NH₄-N content and NO₃-N content in August 2012. N₂O fluxes were measured with static opaque chambers at these sites in June and August 2012. Pika burrowing altered soil aeration by transferring deeper soil to the surface and by constructing underground burrows, which significantly increased bulk density, and reduced soil water content, SOM and NH₄-N content at 0–10 cm and 10–20 cm soil depth. N₂O flux had a significant correlation with bulk density, SOM and NH₄-N content. Pika burrowing significantly influenced N₂O flux by increasing N₂O flux at the control site from near zero to 0.063±0.011 mg m^-2 h^-1. Our findings described how pika burrowing influences the soil traits and significantly increases the principal greenhouse gas N₂O emission. As plateau pika was commonly considered as a pest, our findings give a novel clue to effectively manage populations of plateau pika on the Qinghai-Tibet Plateau from the perspective of greenhouse gas emission.