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Bruce T, Amir Z, Allen BL, Alting BF, Amos M, Augusteyn J, Ballard G, Behrendorff LM, Bell K, Bengsen AJ, Bennett A, Benshemesh JS, Bentley J, Blackmore CJ, Boscarino‐Gaetano R, Bourke LA, Brewster R, Brook BW, Broughton C, Buettel JC, Carter A, Chiu‐Werner A, Claridge AW, Comer S, Comte S, Connolly RM, Cowan MA, Cross SL, Cunningham CX, Dalziell AH, Davies HF, Davis J, Dawson SJ, Di Stefano J, Dickman CR, Dillon ML, Doherty TS, Driessen MM, Driscoll DA, Dundas SJ, Eichholtzer AC, Elliott TF, Elsworth P, Fancourt BA, Fardell LL, Faris J, Fawcett A, Fisher DO, Fleming PJS, Forsyth DM, Garza‐Garcia AD, Geary WL, Gillespie G, Giumelli PJ, Gracanin A, Grantham HS, Greenville AC, Griffiths SR, Groffen H, Hamilton DG, Harriott L, Hayward MW, Heard G, Heiniger J, Helgen KM, Henderson TJ, Hernandez‐Santin L, Herrera C, Hirsch BT, Hohnen R, Hollings TA, Hoskin CJ, Hradsky BA, Humphrey JE, Jennings PR, Jones ME, Jordan NR, Kelly CL, Kennedy MS, Knipler ML, Kreplins TL, L'Herpiniere KL, Laurance WF, Lavery TH, Le Pla M, Leahy L, Leedman A, Legge S, Leitão AV, Letnic M, Liddell MJ, Lieb ZE, Linley GD, Lisle AT, Lohr CA, Maitz N, Marshall KD, Mason RT, Matheus‐Holland DF, McComb LB, et alBruce T, Amir Z, Allen BL, Alting BF, Amos M, Augusteyn J, Ballard G, Behrendorff LM, Bell K, Bengsen AJ, Bennett A, Benshemesh JS, Bentley J, Blackmore CJ, Boscarino‐Gaetano R, Bourke LA, Brewster R, Brook BW, Broughton C, Buettel JC, Carter A, Chiu‐Werner A, Claridge AW, Comer S, Comte S, Connolly RM, Cowan MA, Cross SL, Cunningham CX, Dalziell AH, Davies HF, Davis J, Dawson SJ, Di Stefano J, Dickman CR, Dillon ML, Doherty TS, Driessen MM, Driscoll DA, Dundas SJ, Eichholtzer AC, Elliott TF, Elsworth P, Fancourt BA, Fardell LL, Faris J, Fawcett A, Fisher DO, Fleming PJS, Forsyth DM, Garza‐Garcia AD, Geary WL, Gillespie G, Giumelli PJ, Gracanin A, Grantham HS, Greenville AC, Griffiths SR, Groffen H, Hamilton DG, Harriott L, Hayward MW, Heard G, Heiniger J, Helgen KM, Henderson TJ, Hernandez‐Santin L, Herrera C, Hirsch BT, Hohnen R, Hollings TA, Hoskin CJ, Hradsky BA, Humphrey JE, Jennings PR, Jones ME, Jordan NR, Kelly CL, Kennedy MS, Knipler ML, Kreplins TL, L'Herpiniere KL, Laurance WF, Lavery TH, Le Pla M, Leahy L, Leedman A, Legge S, Leitão AV, Letnic M, Liddell MJ, Lieb ZE, Linley GD, Lisle AT, Lohr CA, Maitz N, Marshall KD, Mason RT, Matheus‐Holland DF, McComb LB, McDonald PJ, McGregor H, McKnight DT, Meek PD, Menon V, Michael DR, Mills CH, Miritis V, Moore HA, Morgan HR, Murphy BP, Murray AJ, Natusch DJD, Neilly H, Nevill P, Newman P, Newsome TM, Nimmo DG, Nordberg EJ, O'Dwyer TW, O'Neill S, Old JM, Oxenham K, Pauza MD, Pestell AJL, Pitcher BJ, Pocknee CA, Possingham HP, Raiter KG, Rand JS, Rees MW, Rendall AR, Renwick J, Reside A, Rew‐Duffy M, Ritchie EG, Roach CP, Robley A, Rog SM, Rout TM, Schlacher TA, Scomparin CR, Sitters H, Smith DA, Somaweera R, Spencer EE, Spindler RE, Stobo‐Wilson AM, Stokeld D, Streeting LM, Sutherland DR, Taggart PL, Teixeira D, Thompson GG, Thompson SA, Thorpe MO, Todd SJ, Towerton AL, Vernes K, Waller G, Wardle GM, Watchorn DJ, Watson AWT, Welbergen JA, Weston MA, Wijas BJ, Williams SE, Woodford LP, Wooster EIF, Znidersic E, Luskin MS. Large-scale and long-term wildlife research and monitoring using camera traps: a continental synthesis. Biol Rev Camb Philos Soc 2025; 100:530-555. [PMID: 39822039 PMCID: PMC11885691 DOI: 10.1111/brv.13152] [Show More Authors] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2023] [Revised: 09/25/2024] [Accepted: 09/27/2024] [Indexed: 01/19/2025]
Abstract
Camera traps are widely used in wildlife research and monitoring, so it is imperative to understand their strengths, limitations, and potential for increasing impact. We investigated a decade of use of wildlife cameras (2012-2022) with a case study on Australian terrestrial vertebrates using a multifaceted approach. We (i) synthesised information from a literature review; (ii) conducted an online questionnaire of 132 professionals; (iii) hosted an in-person workshop of 28 leading experts representing academia, non-governmental organisations (NGOs), and government; and (iv) mapped camera trap usage based on all sources. We predicted that the last decade would have shown: (i) exponentially increasing sampling effort, a continuation of camera usage trends up to 2012; (ii) analytics to have shifted from naive presence/absence and capture rates towards hierarchical modelling that accounts for imperfect detection, thereby improving the quality of outputs and inferences on occupancy, abundance, and density; and (iii) broader research scales in terms of multi-species, multi-site and multi-year studies. However, the results showed that the sampling effort has reached a plateau, with publication rates increasing only modestly. Users reported reaching a saturation point in terms of images that could be processed by humans and time for complex analyses and academic writing. There were strong taxonomic and geographic biases towards medium-large mammals (>500 g) in forests along Australia's southeastern coastlines, reflecting proximity to major cities. Regarding analytical choices, bias-prone indices still accounted for ~50% of outputs and this was consistent across user groups. Multi-species, multi-site and multiple-year studies were rare, largely driven by hesitancy around collaboration and data sharing. There is no widely used repository for wildlife camera images and the Atlas of Living Australia (ALA) is the dominant repository for sharing tabular occurrence records. However, the ALA is presence-only and thus is unsuitable for creating detection histories with absences, inhibiting hierarchical modelling. Workshop discussions identified a pressing need for collaboration to enhance the efficiency, quality and scale of research and management outcomes, leading to the proposal of a Wildlife Observatory of Australia (WildObs). To encourage data standards and sharing, WildObs should (i) promote a metadata collection app; (ii) create a tagged image repository to facilitate artificial intelligence/machine learning (AI/ML) computer vision research in this space; (iii) address the image identification bottleneck via the use of AI/ML-powered image-processing platforms; (iv) create data commons for detection histories that are suitable for hierarchical modelling; and (v) provide capacity building and tools for hierarchical modelling. Our review highlights that while Australia's investments in monitoring biodiversity with cameras position it to be a global leader in this context, realising that potential requires a paradigm shift towards best practices for collecting, curating, sharing and analysing 'Big Data'. Our findings and framework have broad applicability outside Australia to enhance camera usage to meet conservation and management objectives ranging from local to global scales. This review articulates a country/continental observatory approach that is also suitable for international collaborative wildlife research networks.
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Affiliation(s)
- Tom Bruce
- Wildlife Observatory of Australia (WildObs), Queensland Cyber Infrastructure Foundation (QCIF)BrisbaneQueensland4072Australia
- School of the EnvironmentUniversity of QueenslandBrisbaneQueensland4072Australia
| | - Zachary Amir
- Wildlife Observatory of Australia (WildObs), Queensland Cyber Infrastructure Foundation (QCIF)BrisbaneQueensland4072Australia
- School of the EnvironmentUniversity of QueenslandBrisbaneQueensland4072Australia
- Terrestrial Ecosystem Research NetworkUniversity of QueenslandBrisbaneQueensland4072Australia
| | - Benjamin L. Allen
- Centre for Sustainable Agricultural Systems, Institute for Life Sciences and the EnvironmentUniversity of Southern QueenslandToowoombaQueensland4350Australia
- Centre for African Conservation EcologyNelson Mandela UniversityGqeberha6034South Africa
| | - Brendan F. Alting
- Centre for Ecosystem Science, School of Biological, Earth and Environmental SciencesUniversity of New South WalesSydneyNew South Wales2052Australia
| | - Matt Amos
- Biosecurity Queensland, Department of Agriculture and Fisheries203 Tor StToowoombaQueensland4350Australia
| | - John Augusteyn
- Queensland Parks and Wildlife Service, Department of Environment Science and InnovationPO Box 3130Red HillQueensland4701Australia
| | - Guy‐Anthony Ballard
- School of Environmental and Rural ScienceUniversity of New EnglandArmidaleNew South Wales2351Australia
| | - Linda M. Behrendorff
- Queensland Parks and Wildlife Service, Department of Environment Science and InnovationPO Box 101MaryboroughQueensland4650Australia
- University of QueenslandBrisbaneQueensland4072Australia
| | - Kristian Bell
- Landscape South Australia, SA Arid Lands Landscape Board1 Jervois StPort AugustaSouth Australia5700Australia
- School of Life and Environmental Sciences, Deakin UniversityBurwood Campus, 221 Burwood HighwayBurwoodVictoria3125Australia
| | - Andrew J. Bengsen
- Vertebrate Pest Research Unit, NSW Department of Primary Industries and Regional DevelopmentOrange Agricultural Institute1447 Forest Road, OrangeNew South Wales2800Australia
| | - Ami Bennett
- School of Agriculture, Food and Ecosystem SciencesThe University of MelbourneParkvilleVictoria3010Australia
| | - Joe S. Benshemesh
- National Malleefowl Recovery Group52 Naroon RdAlphingtonVictora3078Australia
| | - Joss Bentley
- Biodiversity, Conservation and Science, NSW Department of Climate Change, Energy, the Environment and Water4 Parramatta Square, 12 Darcy StreetParramattaNew South Wales2150Australia
| | - Caroline J. Blackmore
- Biodiversity, Conservation and Science, NSW Department of Climate Change, Energy, the Environment and Water4 Parramatta Square, 12 Darcy StreetParramattaNew South Wales2150Australia
| | - Remo Boscarino‐Gaetano
- School of Environmental and Rural ScienceUniversity of New EnglandArmidaleNew South Wales2351Australia
| | - Lachlan A. Bourke
- School of the EnvironmentUniversity of QueenslandBrisbaneQueensland4072Australia
| | - Rob Brewster
- Rewilding Australia ProgramWWF‐AustraliaPO Box 528SydneyNew South Wales2001Australia
| | - Barry W. Brook
- School of Natural SciencesUniversity of Tasmania, Sandy BayTasmania7001Australia
| | - Colin Broughton
- Bush Heritage Australia, Level 10, 637 Flinders StreetDocklandsVictoria3008Australia
| | - Jessie C. Buettel
- School of Natural SciencesUniversity of Tasmania, Sandy BayTasmania7001Australia
| | - Andrew Carter
- Gulbali InstituteCharles Sturt UniversityThurgoonaNew South Wales2640Australia
| | - Antje Chiu‐Werner
- School of Natural SciencesUniversity of Tasmania, Sandy BayTasmania7001Australia
| | - Andrew W. Claridge
- Vertebrate Pest Research Unit, NSW Department of Primary Industries and Regional Development11 Farrer PlaceQueanbeyanNew South Wales2620Australia
- School of ScienceUniversity of New South Wales, Northcott DriveCanberraAustralian Capital Territory2601Australia
| | - Sarah Comer
- South Coast Region, Parks and Wildlife Service, Department of Biodiversity Conservation and AttractionsSouth Coast Region, 120 Albany HwyAlbanyWestern Australia6330Australia
- University of Western Australia, Centre of Excellence in Natural Resource ManagementAlbanyWestern Australia6330Australia
| | - Sebastien Comte
- Vertebrate Pest Research Unit, NSW Department of Primary Industries and Regional DevelopmentOrange Agricultural Institute1447 Forest Road, OrangeNew South Wales2800Australia
- Evolution and Ecology Research Centre, School of Biological, Earth and Environmental SciencesUniversity of New South WalesSydneyNew South Wales2052Australia
| | - Rod M. Connolly
- Global Wetlands Program, Coastal and Marine Research Centre, Australian Rivers Institute, School of Environment and ScienceGriffith UniversityGold CoastQueensland4222Australia
| | - Mitchell A. Cowan
- Gulbali InstituteCharles Sturt UniversityThurgoonaNew South Wales2640Australia
- School of Agriculture and Environmental SciencesUniversity of Western AustraliaCrawleyWestern Australia6009Australia
| | - Sophie L. Cross
- ARC Centre for Mine Site Restoration, School of Molecular and Life SciencesCurtin UniversityBentleyWestern Australia6102Australia
| | - Calum X. Cunningham
- School of Natural SciencesUniversity of Tasmania, Sandy BayTasmania7001Australia
| | - Anastasia H. Dalziell
- Hawkesbury Institute for the EnvironmentWestern Sydney UniversityRichmondNew South Wales2753Australia
| | - Hugh F. Davies
- School of Environmental and Rural ScienceUniversity of New EnglandArmidaleNew South Wales2351Australia
- Research Institute for the Environment and LivelihoodsCharles Darwin UniversityEllengowan DrCasuarinaNorthern Territory0810Australia
| | - Jenny Davis
- Research Institute for the Environment and LivelihoodsCharles Darwin UniversityEllengowan DrCasuarinaNorthern Territory0810Australia
| | - Stuart J. Dawson
- Invasive Species and Environmental Biosecurity, Department of Primary Industries and Regional Development1 Nash StPerthWestern Australia6000Australia
- Harry Butler Institute, Murdoch University90 South StMurdochWestern Australia6150Australia
| | - Julian Di Stefano
- School of Agriculture, Food and Ecosystem SciencesThe University of Melbourne4 Water StCreswickVictoria3363Australia
| | - Christopher R. Dickman
- School of Life and Environmental SciencesThe University of SydneySydneyNew South Wales2006Australia
| | - Martin L. Dillon
- Northern Tablelands, Local Land Services126 Taylor StreetArmidaleNew South Wales2350Australia
| | - Tim S. Doherty
- School of Life and Environmental SciencesThe University of SydneySydneyNew South Wales2006Australia
- Biodiversity and Conservation Science, Department of Biodiversity, Conservation and AttractionsWoodvaleWestern Australia6026Australia
| | - Michael M. Driessen
- Natural Resources and Environment Tasmania, Tasmanian GovernmentHobartTasmaniaAustralia
| | - Don A. Driscoll
- School of Life and Environmental Sciences, Deakin UniversityBurwood Campus, 221 Burwood HighwayBurwoodVictoria3125Australia
| | - Shannon J. Dundas
- Vertebrate Pest Research Unit, NSW Department of Primary Industries and Regional DevelopmentOrange Agricultural Institute1447 Forest Road, OrangeNew South Wales2800Australia
| | - Anne C. Eichholtzer
- School of Life and Environmental Sciences, Deakin UniversityBurwood Campus, 221 Burwood HighwayBurwoodVictoria3125Australia
| | - Todd F. Elliott
- School of Environmental and Rural ScienceUniversity of New EnglandArmidaleNew South Wales2351Australia
| | - Peter Elsworth
- Biosecurity Queensland, Department of Agriculture and Fisheries203 Tor StToowoombaQueensland4350Australia
| | - Bronwyn A. Fancourt
- School of Environmental and Rural ScienceUniversity of New EnglandArmidaleNew South Wales2351Australia
- Queensland Parks and Wildlife Service, Department of Environment Science and InnovationPO Box 1442ToowoombaQueensland4350Australia
| | - Loren L. Fardell
- School of the EnvironmentUniversity of QueenslandBrisbaneQueensland4072Australia
| | - James Faris
- NSW National Parks and Wildlife Service, NSW Department of Climate Change, Energy, The Environment and Water4 Parramatta Square, 12 Darcy StreetParramattaNew South Wales2150Australia
| | - Adam Fawcett
- NSW National Parks and Wildlife Service, NSW Department of Climate Change, Energy, The Environment and Water4 Parramatta Square, 12 Darcy StreetParramattaNew South Wales2150Australia
| | - Diana O. Fisher
- School of the EnvironmentUniversity of QueenslandBrisbaneQueensland4072Australia
| | - Peter J. S. Fleming
- School of Environmental and Rural ScienceUniversity of New EnglandArmidaleNew South Wales2351Australia
- Vertebrate Pest Research Unit, NSW Department of Primary Industries and Regional DevelopmentOrange Agricultural Institute1447 Forest Road, OrangeNew South Wales2800Australia
- Centre for Sustainable Agricultural SystemsUniversity of Southern Queensland487‐535 West StreetDarling HeightsQueensland4350Australia
| | - David M. Forsyth
- Vertebrate Pest Research Unit, NSW Department of Primary Industries and Regional DevelopmentOrange Agricultural Institute1447 Forest Road, OrangeNew South Wales2800Australia
- Evolution and Ecology Research Centre, School of Biological, Earth and Environmental SciencesUniversity of New South WalesSydneyNew South Wales2052Australia
| | - Alejandro D. Garza‐Garcia
- School of the EnvironmentUniversity of QueenslandBrisbaneQueensland4072Australia
- Global Wetlands Program, Coastal and Marine Research Centre, Australian Rivers InstituteGriffith UniversityNathanQueensland4111Australia
| | - William L. Geary
- School of Agriculture, Food and Ecosystem SciencesThe University of MelbourneParkvilleVictoria3010Australia
| | - Graeme Gillespie
- Flora and Fauna Division, Northern Territory Department of Environment, Parks and Water SecurityDarwinNorthern TerritoryAustralia
| | - Patrick J. Giumelli
- WWF‐AustraliaSuite 3.01, Level 3/45 Clarence StSydneyNew South Wales2000Australia
| | - Ana Gracanin
- Fenner School of Environment and Society, ANU College of ScienceThe Australian National UniversityCanberraAustralian Capital Territory2601Australia
| | - Hedley S. Grantham
- School of Biological, Earth and Environmental SciencesUniversity of New South WalesSydneyNew South Wales2052Australia
- Science and Conservation, Bush Heritage AustraliaLevel 10, 637 Flinders StreetDocklandsVictoria3008Australia
| | - Aaron C. Greenville
- School of Life and Environmental SciencesThe University of SydneySydneyNew South Wales2006Australia
| | - Stephen R. Griffiths
- Research Centre for Future Landscapes, School of Agriculture, Biomedicine and EnvironmentLa Trobe UniversityKingsbury Drive and Plenty RoadBundooraVictoria3086Australia
| | - Heidi Groffen
- Kangaroo Island Land for Wildlife Association IncorporatedPO Box 1039KingscoteSouth Australia5223Australia
| | - David G. Hamilton
- School of Natural SciencesUniversity of Tasmania, Sandy BayTasmania7001Australia
- Tasmanian Land Conservancy183 Macquarie StreetHobartTasmania7000Australia
| | - Lana Harriott
- Biosecurity Queensland, Department of Agriculture and Fisheries, Ecosciences PrecinctGPO Box 267BrisbaneQueensland4001Australia
| | - Matthew W. Hayward
- College of Engineering, Science and the EnvironmentThe University of NewcastleUniversity DriveCallaghanNew South Wales2308Australia
| | - Geoffrey Heard
- Terrestrial Ecosystem Research NetworkUniversity of QueenslandBrisbaneQueensland4072Australia
| | - Jaime Heiniger
- School of Environmental and Rural ScienceUniversity of New EnglandArmidaleNew South Wales2351Australia
| | - Kristofer M. Helgen
- Australian Museum Research InstituteAustralian Museum, 1 William StreetSydneyNew South Wales2010Australia
| | - Tim J. Henderson
- Central‐South Region, Australian Wildlife ConservancyPMB 146 C/O NewhavenAlice SpringsNorthern Territory0872Australia
| | - Lorna Hernandez‐Santin
- Centre for Mined Land Rehabilitation, Sustainable Minerals InstituteUniversity of QueenslandBrisbaneQueensland4072Australia
| | - Cesar Herrera
- Global Wetlands Program, Coastal and Marine Research Centre, Australian Rivers Institute, School of Environment and ScienceGriffith UniversityGold CoastQueensland4222Australia
| | - Ben T. Hirsch
- Centre for Tropical Environmental and Sustainability Science, College of Science and EngineeringJames Cook UniversityTownsvilleQueensland4811Australia
- Smithsonian Tropical Research InstitutePanamaPanama
| | - Rosemary Hohnen
- Research Institute for the Environment and LivelihoodsCharles Darwin UniversityEllengowan DrCasuarinaNorthern Territory0810Australia
- Department of BiologyWilfrid Laurier University75 University Ave WWaterlooONN2L 3C5Canada
| | - Tracey A. Hollings
- School of BioSciencesThe University of MelbourneParkvilleVictoria3010Australia
| | - Conrad J. Hoskin
- Centre for Tropical Environmental and Sustainability Science, College of Science and EngineeringJames Cook UniversityTownsvilleQueensland4811Australia
| | - Bronwyn A. Hradsky
- School of Agriculture, Food and Ecosystem SciencesThe University of MelbourneParkvilleVictoria3010Australia
| | - Jacinta E. Humphrey
- Department of Environment and Genetics, School of Agriculture, Biomedicine and EnvironmentLa Trobe UniversityKingsbury Drive and Plenty RoadBundooraVictoria3086Australia
- ICON Science, School of Global, Urban and Social StudiesRMIT University124 La Trobe StreetMelbourneVictoria3000Australia
| | - Paul R. Jennings
- Kangaroo Island Landscape Board, Kangaroo Island Landscape Board35 Dauncey StreetKingscoteSouth Australia5223Australia
| | - Menna E. Jones
- School of Natural SciencesUniversity of Tasmania, Sandy BayTasmania7001Australia
| | - Neil R. Jordan
- Centre for Ecosystem Science, School of Biological, Earth and Environmental SciencesUniversity of New South WalesSydneyNew South Wales2052Australia
- Taronga Institute of Science and Learning, Taronga Conservation Society AustraliaBradleys Head RoadMosmanNew South WalesAustralia
| | - Catherine L. Kelly
- Biosecurity Queensland, Department of Agriculture and Fisheries203 Tor StToowoombaQueensland4350Australia
| | - Malcolm S. Kennedy
- Threatened Species Operations, Department of Environment Science and Innovation203 Tor StToowoombaQueensland4350Australia
| | - Monica L. Knipler
- Biodiversity, Conservation and Science, NSW Department of Climate Change, Energy, the Environment and Water4 Parramatta Square, 12 Darcy StreetParramattaNew South Wales2150Australia
| | - Tracey L. Kreplins
- Harry Butler Institute, Murdoch University90 South StMurdochWestern Australia6150Australia
- Invasive Species and Environmental Biosecurity, Department of Primary Industries and Regional Development75 York RdNorthamWestern Australia6401Australia
| | - Kiara L. L'Herpiniere
- Bush Heritage Australia, Level 10, 637 Flinders StreetDocklandsVictoria3008Australia
| | - William F. Laurance
- Centre for Tropical Environmental and Sustainability Science, College of Science and EngineeringJames Cook University1/14‐88 McGregor RoadSmithfieldQueensland4870Australia
| | - Tyrone H. Lavery
- School of BioSciencesThe University of MelbourneParkvilleVictoria3010Australia
| | - Mark Le Pla
- School of Agriculture, Food and Ecosystem SciencesThe University of MelbourneParkvilleVictoria3010Australia
| | - Lily Leahy
- Department of Environment and Genetics, School of Agriculture, Biomedicine and EnvironmentLa Trobe UniversityKingsbury Drive and Plenty RoadBundooraVictoria3086Australia
| | - Ashley Leedman
- Department of Climate Change, Energy, the Environment and Water, Department of Climate Change, Energy, the Environment and WaterGPO Box 3090CanberraAustralian Captial Territory2601Australia
| | - Sarah Legge
- Research Institute for the Environment and LivelihoodsCharles Darwin UniversityEllengowan DrCasuarinaNorthern Territory0810Australia
- Fenner School of Environment and Society, ANU College of ScienceThe Australian National UniversityCanberraAustralian Capital Territory2601Australia
| | - Ana V. Leitão
- School of BioSciencesThe University of MelbourneParkvilleVictoria3010Australia
- CIBIO – Research Centre in Biodiversity and Genetic ResourcesUniversity of PortoCampus de Vairo, Rua Padre Armando Quintas, 4485‐661 VairoPortugal
- BIOPOLIS – Program in Genomics, Biodiversity and Land PlanningCampus de Vairo, Rua Padre Armando Quintas, 4485‐661 VairoPortugal
| | - Mike Letnic
- Evolution and Ecology Research Centre, School of Biological, Earth and Environmental SciencesUniversity of New South WalesSydneyNew South Wales2052Australia
| | - Michael J. Liddell
- Centre for Tropical Environmental and Sustainability Science, College of Science and EngineeringJames Cook University1/14‐88 McGregor RoadSmithfieldQueensland4870Australia
| | - Zoë E. Lieb
- School of the EnvironmentUniversity of QueenslandBrisbaneQueensland4072Australia
| | - Grant D. Linley
- Gulbali InstituteCharles Sturt UniversityThurgoonaNew South Wales2640Australia
| | - Allan T. Lisle
- Queensland Alliance for Agriculture and Food InnovationUniversity of QueenslandBrisbaneQueensland4072Australia
- School of Agriculture and Food SustainabilityUniversity of QueenslandBrisbaneQueensland4072Australia
| | - Cheryl A. Lohr
- Biodiversity and Conservation Science, Department of Biodiversity, Conservation and AttractionsWoodvaleWestern Australia6026Australia
| | - Natalya Maitz
- School of the EnvironmentUniversity of QueenslandBrisbaneQueensland4072Australia
| | - Kieran D. Marshall
- NSW National Parks and Wildlife Service, NSW Department of Climate Change, Energy, The Environment and Water4 Parramatta Square, 12 Darcy StreetParramattaNew South Wales2150Australia
| | - Rachel T. Mason
- School of Life and Environmental Sciences, Deakin UniversityBurwood Campus, 221 Burwood HighwayBurwoodVictoria3125Australia
| | | | - Leo B. McComb
- School of BioSciencesThe University of MelbourneParkvilleVictoria3010Australia
| | - Peter J. McDonald
- Flora and Fauna Division, Northern Territory Department of Environment, Parks and Water SecurityArid Zone Research InstituteSouth Stuart HighwayAlice SpringsNorthern Territory0870Australia
| | - Hugh McGregor
- Nature FoundationLevel 2, Payinthi, 128 Prospect Road, ProspectSouth Australia5082Australia
| | | | - Paul D. Meek
- School of Environmental and Rural ScienceUniversity of New EnglandArmidaleNew South Wales2351Australia
- Vertebrate Pest Research Unit, NSW Department of Primary Industries and Regional Development30 Park AvenueCoffs HarbourNew South Wales2450Australia
| | - Vishnu Menon
- School of Agriculture, Food and Ecosystem SciencesThe University of MelbourneParkvilleVictoria3010Australia
| | - Damian R. Michael
- Gulbali InstituteCharles Sturt UniversityThurgoonaNew South Wales2640Australia
| | - Charlotte H. Mills
- Evolution and Ecology Research Centre, School of Biological, Earth and Environmental SciencesUniversity of New South WalesSydneyNew South Wales2052Australia
| | - Vivianna Miritis
- School of Life and Environmental SciencesThe University of SydneySydneyNew South Wales2006Australia
| | - Harry A. Moore
- School of Agriculture and Environmental SciencesUniversity of Western AustraliaCrawleyWestern Australia6009Australia
- Biodiversity and Conservation Science, Department of Biodiversity, Conservation and AttractionsWoodvaleWestern Australia6026Australia
| | - Helen R. Morgan
- Tasmanian Land Conservancy183 Macquarie StreetHobartTasmania7000Australia
| | - Brett P. Murphy
- Research Institute for the Environment and LivelihoodsCharles Darwin UniversityEllengowan DrCasuarinaNorthern Territory0810Australia
| | - Andrew J. Murray
- Natural Environments Program, Gippsland, Victorian Government Department of Environment, Land, Water and Planning71‐173 Nicholson Street, OrbostVictoria3888Australia
| | - Daniel J. D. Natusch
- School of Natural SciencesMacquarie University, Wallumattagal CampusMacquarie ParkNew South WalesAustralia
| | - Heather Neilly
- Future Regions Research CentreFederation UniversityMount HelenVictoria3350Australia
- Australian Landscape TrustPO Box 955RenmarkSouth Australia5341Australia
| | - Paul Nevill
- Minesite Biodiversity Monitoring with eDNA (MBioMe) Research Group, TrEnD Lab, School of Life and Molecular SciencesCurtin UniversityBentleyWestern Australia6102Australia
| | - Peggy Newman
- Atlas of Living Australia, CSIRO National Collections and Marine InfrastructureMelbourneVictoriaAustralia
| | - Thomas M. Newsome
- School of Life and Environmental SciencesThe University of SydneySydneyNew South Wales2006Australia
| | - Dale G. Nimmo
- Gulbali InstituteCharles Sturt UniversityThurgoonaNew South Wales2640Australia
| | - Eric J. Nordberg
- School of Environmental and Rural ScienceUniversity of New EnglandArmidaleNew South Wales2351Australia
- College of Science and EngineeringJames Cook UniversityTownsvilleQueensland4811Australia
| | - Terence W. O'Dwyer
- Gadfly Ecological Services34 Ashford StreetShorncliffeQueensland4017Australia
| | - Sally O'Neill
- Terrestrial Ecosystem Research NetworkThe University of AdelaideGPO Box 498AdelaideSouth Australia5005Australia
| | - Julie M. Old
- School of ScienceWestern Sydney UniversityRichmondNew South Wales2753Australia
| | - Katherine Oxenham
- NSW National Parks and Wildlife Service, NSW Department of Climate Change, Energy, The Environment and Water4 Parramatta Square, 12 Darcy StreetParramattaNew South Wales2150Australia
| | - Matthew D. Pauza
- Natural Resources and Environment Tasmania, Tasmanian GovernmentHobartTasmaniaAustralia
| | - Ange J. L. Pestell
- School of Life and Environmental Sciences, Deakin UniversityBurwood Campus, 221 Burwood HighwayBurwoodVictoria3125Australia
| | - Benjamin J. Pitcher
- Taronga Institute of Science and Learning, Taronga Conservation Society AustraliaBradleys Head RoadMosmanNew South WalesAustralia
- School of Natural Science, Faculty of Science and EngineeringMacquarie UniversityWallumattagal CampusMacquarie ParkNew South WalesAustralia
| | | | - Hugh P. Possingham
- School of the EnvironmentUniversity of QueenslandBrisbaneQueensland4072Australia
| | - Keren G. Raiter
- School of the EnvironmentUniversity of QueenslandBrisbaneQueensland4072Australia
- School of Biological SciencesUniversity of Western Australia35 Stirling Hwy CrawleyPerthWestern Australia6009Australia
- Environment, CSIROUnderwood AveFloreatWestern Australia6010Australia
| | - Jacquie S. Rand
- School of Veterinary ScienceUniversity of QueenslandGattonQueenslandAustralia
- Australian Pet Welfare Foundation13 Robertson Place, Fig Tree PocketQueensland4069Australia
| | - Matthew W. Rees
- Health and Biosecurity, Commonwealth Science and Industrial Research OrganisationBrisbaneQueenslandAustralia
| | - Anthony R. Rendall
- School of Life and Environmental Sciences, Deakin UniversityBurwood Campus, 221 Burwood HighwayBurwoodVictoria3125Australia
| | - Juanita Renwick
- Threatened Species Operations, Department of Environment Science and InnovationLevel 6, 12 First AvenueMaroochydoreQueensland4558Australia
| | - April Reside
- School of the EnvironmentUniversity of QueenslandBrisbaneQueensland4072Australia
| | - Miranda Rew‐Duffy
- School of Agriculture and Food SustainabilityUniversity of QueenslandBrisbaneQueensland4072Australia
| | - Euan G. Ritchie
- School of Life and Environmental Sciences, Deakin UniversityBurwood Campus, 221 Burwood HighwayBurwoodVictoria3125Australia
| | - Chris P. Roach
- Queensland Parks and Wildlife Service, Department of Environment Science and InnovationPO Box 44, InnisfailQueensland4860Australia
| | - Alan Robley
- Department of Energy, Environment and Climate Action, Arthur Rylah Institute for Environmental Research123 Brown StreetHeidelbergVictoria3084Australia
| | - Stefanie M. Rog
- Wildlife and Natural Heritage, Royal Commision of AlulaRoad 375, 7487AlulaSaudi Arabia
| | - Tracy M. Rout
- WWF‐AustraliaSuite 3.01, Level 3/45 Clarence StSydneyNew South Wales2000Australia
| | - Thomas A. Schlacher
- School of Science, Engineering and TechnologyUniversity of the Sunshine CoastMaroochydore DCQueensland4558Australia
| | - Cyril R. Scomparin
- School of Natural SciencesUniversity of Tasmania, Sandy BayTasmania7001Australia
| | - Holly Sitters
- School of Agriculture, Food and Ecosystem SciencesThe University of MelbourneParkvilleVictoria3010Australia
- National Science, Australian Wildlife ConservancyPO Box 8070, EastSubiacoWestern Australia6008Australia
| | - Deane A. Smith
- School of Environmental and Rural ScienceUniversity of New EnglandArmidaleNew South Wales2351Australia
- Vertebrate Pest Research Unit, NSW Department of Primary Industries and Regional DevelopmentArmidaleNew South Wales2351Australia
| | - Ruchira Somaweera
- Ecology Team, Stantec AustraliaPerthWestern Australia6000Australia
- School of Environmental and Conservation ScienceMurdoch UniversityMurdochWestern Australia6150Australia
| | - Emma E. Spencer
- WWF‐AustraliaSuite 3.01, Level 3/45 Clarence StSydneyNew South Wales2000Australia
| | - Rebecca E. Spindler
- Bush Heritage Australia, Level 10, 637 Flinders StreetDocklandsVictoria3008Australia
| | - Alyson M. Stobo‐Wilson
- Environment, Commonwealth Science and Industrial Research OrganisationWinnellieNorthern TerritoryAustralia
| | - Danielle Stokeld
- NSW National Parks and Wildlife Service, NSW Department of Climate Change, Energy, The Environment and Water4 Parramatta Square, 12 Darcy StreetParramattaNew South Wales2150Australia
- Flora and Fauna Division, Northern Territory Department of Environment, Parks and Water SecurityDarwinNorthern TerritoryAustralia
| | - Louise M. Streeting
- School of Environmental and Rural ScienceUniversity of New EnglandArmidaleNew South Wales2351Australia
| | - Duncan R. Sutherland
- School of Agriculture, Food and Ecosystem SciencesThe University of MelbourneParkvilleVictoria3010Australia
- Conservation DepartmentPhillip Island Nature Parks, PO Box 97CowesVictoria3922Australia
| | - Patrick L. Taggart
- Bush Heritage Australia, Level 10, 637 Flinders StreetDocklandsVictoria3008Australia
| | - Daniella Teixeira
- Bush Heritage Australia, Level 10, 637 Flinders StreetDocklandsVictoria3008Australia
- School of Biology and Environmental ScienceQueensland University of TechnologyGardens Point CampusBrisbaneQueensland4000Australia
| | - Graham G. Thompson
- School of Biological SciencesUniversity of Western Australia35 Stirling Hwy CrawleyPerthWestern Australia6009Australia
- Terrestrial Ecosystems10 Houston PlaceMt ClaremontWestern Australia6010Australia
| | - Scott A. Thompson
- Terrestrial Ecosystems10 Houston PlaceMt ClaremontWestern Australia6010Australia
- School of Molecular and Life SciencesCurtin UniversityBentleyWestern Australia6102Australia
| | - Mary O. Thorpe
- Environment & Science Directorate, Research Partnerships & Programs UnitParks Victoria, Level 1, 65 Church StreetMorwellVictoria3840Australia
| | - Stephanie J. Todd
- Centre for Tropical Environmental and Sustainability Science, College of Science and EngineeringJames Cook University1/14‐88 McGregor RoadSmithfieldQueensland4870Australia
| | - Alison L. Towerton
- Greater Sydney, Local Land ServicesLevel 4, 2‐6 Station StreetPenrithNew South Wales2750Australia
| | - Karl Vernes
- School of Environmental and Rural ScienceUniversity of New EnglandArmidaleNew South Wales2351Australia
| | - Grace Waller
- Southern Ark, Victorian Government Department of Energy, Environment and Climate Action171‐173 Nicholson StreetOrbostVictoria3888Australia
| | - Glenda M. Wardle
- School of Life and Environmental SciencesThe University of SydneySydneyNew South Wales2006Australia
| | - Darcy J. Watchorn
- School of Life and Environmental Sciences, Deakin UniversityBurwood Campus, 221 Burwood HighwayBurwoodVictoria3125Australia
- Wildlife Conservation and Science Department, Zoos VictoriaHealesville Sanctuary, Badger Creek RoadHealesvilleVictoria3777Australia
| | - Alexander W. T. Watson
- North‐East Region, Australian Wildlife Conservancy21 Balfe StCairnsQueensland4870Australia
| | - Justin A. Welbergen
- Hawkesbury Institute for the EnvironmentWestern Sydney UniversityRichmondNew South Wales2753Australia
| | - Michael A. Weston
- School of Life and Environmental Sciences, Deakin UniversityBurwood Campus, 221 Burwood HighwayBurwoodVictoria3125Australia
- Deakin Marine Research and Innovation Centre GeelongDeakin UniversityGeelongVICAustralia
| | - Baptiste J. Wijas
- Evolution and Ecology Research Centre, School of Biological, Earth and Environmental SciencesUniversity of New South WalesSydneyNew South Wales2052Australia
| | - Stephen E. Williams
- Centre for Tropical Environmental and Sustainability Science, College of Science and EngineeringJames Cook University1/14‐88 McGregor RoadSmithfieldQueensland4870Australia
| | - Luke P. Woodford
- Department of Energy, Environment and Climate Action, Arthur Rylah Institute for Environmental Research123 Brown StreetHeidelbergVictoria3084Australia
| | | | - Elizabeth Znidersic
- Gulbali InstituteCharles Sturt UniversityThurgoonaNew South Wales2640Australia
| | - Matthew S. Luskin
- Wildlife Observatory of Australia (WildObs), Queensland Cyber Infrastructure Foundation (QCIF)BrisbaneQueensland4072Australia
- School of the EnvironmentUniversity of QueenslandBrisbaneQueensland4072Australia
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5
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Li Y, Devenish C, Tosa MI, Luo M, Bell DM, Lesmeister DB, Greenfield P, Pichler M, Levi T, Yu DW. Combining environmental DNA and remote sensing for efficient, fine-scale mapping of arthropod biodiversity. Philos Trans R Soc Lond B Biol Sci 2024; 379:20230123. [PMID: 38705177 PMCID: PMC11070265 DOI: 10.1098/rstb.2023.0123] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/31/2023] [Accepted: 01/31/2024] [Indexed: 05/07/2024] Open
Abstract
Arthropods contribute importantly to ecosystem functioning but remain understudied. This undermines the validity of conservation decisions. Modern methods are now making arthropods easier to study, since arthropods can be mass-trapped, mass-identified, and semi-mass-quantified into 'many-row (observation), many-column (species)' datasets, with homogeneous error, high resolution, and copious environmental-covariate information. These 'novel community datasets' let us efficiently generate information on arthropod species distributions, conservation values, uncertainty, and the magnitude and direction of human impacts. We use a DNA-based method (barcode mapping) to produce an arthropod-community dataset from 121 Malaise-trap samples, and combine it with 29 remote-imagery layers using a deep neural net in a joint species distribution model. With this approach, we generate distribution maps for 76 arthropod species across a 225 km2 temperate-zone forested landscape. We combine the maps to visualize the fine-scale spatial distributions of species richness, community composition, and site irreplaceability. Old-growth forests show distinct community composition and higher species richness, and stream courses have the highest site-irreplaceability values. With this 'sideways biodiversity modelling' method, we demonstrate the feasibility of biodiversity mapping at sufficient spatial resolution to inform local management choices, while also being efficient enough to scale up to thousands of square kilometres. This article is part of the theme issue 'Towards a toolkit for global insect biodiversity monitoring'.
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Affiliation(s)
- Yuanheng Li
- Yunnan Key Laboratory of Biodiversity and Ecological Security of Gaoligong Mountain, State Key Laboratory of Genetic Resources and Evolution, Chinese Academy of Sciences, Kunming, Yunnan 650223, People’s Republic of China
- Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650223, People’s Republic of China
- Faculty of Biology, University of Duisburg-Essen, Essen 45141, Germany
| | - Christian Devenish
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, Norfolk NR47TJ, UK
| | - Marie I. Tosa
- Department of Fisheries, Wildlife, and Conservation Sciences, Oregon State University, Corvallis, OR 97331, USA
| | - Mingjie Luo
- Yunnan Key Laboratory of Biodiversity and Ecological Security of Gaoligong Mountain, State Key Laboratory of Genetic Resources and Evolution, Chinese Academy of Sciences, Kunming, Yunnan 650223, People’s Republic of China
- Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650223, People’s Republic of China
- Kunming College of Life Sciences, University of Chinese Academy of Sciences, Kunming, People’s Republic of China
| | - David M. Bell
- Pacific Northwest Research Station, U.S. Department of Agriculture Forest Service, Corvallis, OR 97331, USA
| | - Damon B. Lesmeister
- Department of Fisheries, Wildlife, and Conservation Sciences, Oregon State University, Corvallis, OR 97331, USA
- Pacific Northwest Research Station, U.S. Department of Agriculture Forest Service, Corvallis, OR 97331, USA
| | - Paul Greenfield
- CSIRO Energy, Lindfield, New South Wales, Australia
- School of Biological Sciences, Macquarie University, Sydney, Australia
| | | | - Taal Levi
- Department of Fisheries, Wildlife, and Conservation Sciences, Oregon State University, Corvallis, OR 97331, USA
| | - Douglas W. Yu
- Yunnan Key Laboratory of Biodiversity and Ecological Security of Gaoligong Mountain, State Key Laboratory of Genetic Resources and Evolution, Chinese Academy of Sciences, Kunming, Yunnan 650223, People’s Republic of China
- Kunming Institute of Zoology, Chinese Academy of Sciences, Kunming, Yunnan 650223, People’s Republic of China
- School of Biological Sciences, University of East Anglia, Norwich Research Park, Norwich, Norfolk NR47TJ, UK
- Center for Excellence in Animal Evolution and Genetics, Chinese Academy of Sciences, Kunming Yunnan 650223, People’s Republic of China
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