Global soil nitrogen cycle pattern and nitrogen enrichment effects: Tropical versus subtropical forests

Microclimatic Influences on Soil Nitrogen Dynamics and Plant Diversity Across Rocky Desertification Gradients in Southwest China

Soil active nitrogen (N) fractions are essential for plant growth and nutrient cycling in terrestrial ecosystems. While previous studies have primarily focused on the impact of vegetation restoration on soil active nitrogen in karst ecosystems, the role of microclimate variation in rocky desertification areas has not been well explored. This study investigates soil active nitrogen fractions and key biotic and abiotic factors across four grades of rocky desertification-non-rocky desertification (NRD), light rocky desertification (LRD), moderate rocky desertification (MRD), and intense rocky desertification (IRD)-within two distinct microclimates: a dry-hot valley and a humid monsoon zone in the karst region of Guizhou Province, China. We evaluate soil organic carbon (SOC), total nitrogen (TN), total phosphorus (TP), soil nitrate nitrogen (NO3--N), ammonium nitrogen (NH4+-N), microbial biomass nitrogen (MBN), soluble organic nitrogen (SON), and plant diversity. Results showed that SOC, TN, and TP were significantly higher in IRD areas. Soil NO3--N, MBN, and SON initially decreased before increasing, with consistent MBN growth in the dry-hot valley. NH4+-N did not differ significantly under NRD but was higher in the dry-hot valley under LRD, MRD, and IRD. The dry-hot valley had higher MBN and SON across most desertification grades. Microclimate significantly influenced soil active N, with higher levels in the dry-hot valley under LRD and MRD conditions. Plant diversity and regeneration varied markedly between the microclimates. In the dry-hot valley, Artemisia dominated herbaceous regeneration, especially in MRD areas. Conversely, the humid monsoon zone showed more diverse regeneration, with Artemisia and Bidens prevalent in MRD and NRD grades. Despite declining plant diversity with desertification, the humid monsoon zone displayed greater resilience. These findings highlight the role of microclimate in influencing soil nitrogen dynamics and plant regeneration across rocky desertification gradients, offering insights for restoration strategies in karst ecosystems.

Edaphic factors mediate the response of nitrogen cycling and related enzymatic activities and functional genes to heavy metals: A review

Soil nitrogen (N) transformations control N availability and plant production and pose environmental concerns when N is lost, raising issues such as soil acidification, water contamination, and climate change. Former studies suggested that soil N cycling is chiefly regulated by microbial activity; however, emerging evidence indicates that this regulation is disrupted by heavy metal (HM) contamination, which alters microbial communities and enzyme functions critical to N transformations. Environmental factors like soil organic carbon, soil texture, water content, temperature, soil pH, N fertilization, and redox status play significant roles in modulating the response of soil N cycling to HM contamination. This review examines how different HMs affect soil N processes, including N fixation, mineralization, nitrification, denitrification, dissimilatory nitrate reduction to ammonium (DNRA), and immobilization, as well as microbial activities and functional genes related to soil N transformations. The review additionally outlines the impact of HMs on environmental degradation, including the risk of soil N losses (e.g., leaching, runoff, and gaseous emissions) and depletion of soil fertility, thus threatening the sustainability of the ecosystem. The effect of edaphic factors and fertilization on soil N cycling response to HM contamination was also examined. The effect of phytoremediation, a sustainable approach to remediate HM polluted soils, on N cycling was also reviewed. Thus, this review underscores the importance of increasing research and innovative strategies to combat HM pollution's effects to enhance soil health, boost crop yields, and protect soil stability and productivity.

Soil moisture determines effects of climates and soil properties on nitrogen cycling: Examination of arid and humid soils

While soil moisture has a significant effect on nitrogen (N) cycling, how it influences the dependence of this important biological process on environmental factors is unknown. Specifically, it is unclear how the relationships of net N mineralization (Nm) and soil moisture vary with soil properties and climates. In turn, how the relationships of Nm vs. soil properties and climates vary with soil moisture is also unknown. Therefore, soil samples from the 26 sites were collected within two climatic regions (i.e., arid and humid) across China. Then a four-week microcosmic incubation experiment was conducted at five soil moisture levels (20, 40, 60, 80, and 100% field water holding capacity (FWHC)) at 25 °C to measure the dynamics of Nm. The results showed that increasing soil moisture significantly increased Nm (+212%) and the N mineralization rate constant (k) (+0.26%), and that the effects of soil moisture were greater in humid soils (+250%) than arid soils (+178%). The slopes of the relationship between Nm vs. soil moisture increased with soil organic carbon (SOC) (+50.6%) and total N (TN) (+65.3%) concentrations, and decreased with pH (-43.0%) and clay content (-0.09%), especially in arid regions. Additionally, Nm was significantly correlated with soil properties and mean annual precipitation (MAP), and the slopes of most of these relationships increased with soil moisture in arid soils (+59.2-3805%), but decreased in humid soils (-1.96-140%). The results indicated that increasing soil moisture strengthened the dependence of Nm on soil properties and climates in arid soils, and that increasing soil pH and clay content reduced, but SOC and TN concentrations enhanced the dependence of Nm on soil moisture. Therefore, with changes in rainfall distribution patterns and an increase in extreme rainfall events, there is enormous potential for Nm in agricultural soils in arid regions, which is regulated by soil moisture and properties. On the contrary, in humid regions, the decoupling of the effects of soil moisture and soil properties on N mineralization could be due to microbial adaptation. Moreover, the coupled effects of soil environment and properties on N cycling in different climatic regions merit great consideration in experimental research as well as in biogeochemical model development and prediction.

Arbuscular mycorrhizal type increases the negative feedback of soil microbial biomass to nitrogen deposition

Soil microbes are crucial for ecosystem health and functioning, playing key roles in decomposing organic matter, nutrient cycling, and carbon sequestration. Mycorrhizal fungi, a vital group of soil microbes, establish symbiotic relationships with plant roots, enhancing plant nutrient uptake and improving soil structure. Globally nitrogen (N) enrichment is recognized as a significant regulator of soil microbial communities. However, whether and how mycorrhiza mediate the effects of N deposition on soil microbial biomass remains unclear. Here, we conducted a global meta-analysis using 1945 paired observations (1309 AM type and 636 NonAM type) from 113 independent studies to assess the mycorrhiza-mediated responses of soil microbial biomass and respiration to N deposition. The results showed that N deposition reduced total, bacterial and fungal biomass, as well as fungi to bacteria ratio (F:B ratio), and the negative impact was more pronounced under AM type compared to NonAM type. Notably, the adverse effects intensified with increasing N application rate under AM type. Moreover, root respiration exhibited a greater increase with N deposition in AM type than in NonAM type, whereas microbial and soil respiration displayed a more significant decrease in AM type compared to NonAM type. The structural equation modeling revealed that the effects of N deposition on microbes were primarily driven by mean annual temperature (MAT) for AM type, whereas for NonAM type, it was mean annual precipitation (MAP) that played a significant role. Overall, our results indicated that soil microbes of the AM type were more susceptible to N deposition compared to those of the NonAM type. The observed patterns indicated that mycorrhizal type could effect the responses of plants and soil to nitrogen deposition, which has implications for ecosystem nutrient cycling and sustainable agriculture.

Effects of vegetation restoration in karst areas on soil nitrogen mineralisation

Background

Nitrogen mineralization plays a critical role in the ecosystem cycle, significantly influencing both the ecosystem function and the nitrogen biogeochemical cycle. Therefore, it is essential to investigate the evolutionary characteristics of soil nitrogen mineralization during the karst vegetation restoration to better understand its importance in the terrestrial nitrogen cycle.

Methods

This study analyzed from various stages of vegetation growth, including a 40-year-old woodland, 20-year-old shrubland, 15-year-old shrubland, 5-year-old grassland, and nearby cropland. The aerobic incubation technique was used for 35 days to evaluate soil N mineralization characteristics and their correlation with soil environmental factors. The study focused on examining the variations in soil N mineralization rate (NMR), N nitrification rate (NR), net nitrification rate (AR), and NH4 +-N and NO3 --N levels.

Results

Nitrate nitrogen, the primary form of inorganic nitrogen, increased by 19.38% in the 0-40 cm soil layer of the 20-year-old shrubland compared to the cultivated land. Soil NH4 +-N levels varied during the incubation period, decreasing by the 14th day and rising again by the 21st day. Soil NO3--N and total inorganic nitrogen levels initially increased, then declined, and eventually stabilized, reaching their highest levels on the 14th day. During vegetation restoration, the soil NR and NMR decreased gradually with increasing incubation time. The 15-year shrub, 20-year shrub, and 40-year woodland showed the potential to increase soil NR and NMR. Furthermore, the 15-year shrub and 20-year shrub also increased soil AR. The Mantel test analysis indicated positive correlations among total nitrogen (TN), total phosphorus (TP), total potassium (TK), silicon (Si), AR, NR, and NMR. While available phosphorus (AP) and NMR demonstrated positive correlations with NR and NMR. Furthermore, TN, TP, TK, and Si were found to be positively correlated with AR, NR, and NMR, whereas AP and NO3 --N showed negative correlations with AR, NR, and NMR. It is worth noting that NH4 +-N had the greatest effect on AR, while the bulk density (BD) significantly affected the NR. Furthermore, ammonium nitrogen (AN) and soil organic carbon (SOC) were identified as the primary contributors to NMR. This study provides a theoretical basis for comprehending the influence of vegetation restoration on soil nitrogen mineralization and its role in ecosystem restoration.

Thinning alters nitrogen transformation processes in subtropical forest soil: Key roles of physicochemical properties

Thinning-a widely used forest management practice-can significantly influence soil nitrogen (N) cycling processes in subtropical forests. However, the effects of different thinning intensities on nitrification, denitrification, and their relationships with soil properties and microbial communities remain poorly understood. Here, we conducted a study in a subtropical forest in China and applied three thinning treatments, i.e., no thinning (0 %), intermediate thinning (10-15 %), and heavy thinning (20-25 %), and investigated the effects of thinning intensity on the potential nitrification rate (PNR), potential denitrification rate (PDR), and microbial communities. Moreover, we explored the relationships among soil physicochemical properties, microbial community structure, and nitrogen transformation rates under different thinning intensities. Our results showed that intermediate and heavy thinning significantly increased the PNR by 87 % and 61 % and decreased the PDR by 31 % and 50 % compared to that of the control, respectively. Although the bacterial community structure was markedly influenced by thinning, the fungal community structure remained stable. Importantly, changes in microbial community composition and diversity had minimal impacts on the nitrogen transformation processes, whereas soil physicochemical properties, such as pH, organic carbon content, and nitrogen forms, were identified as the primary drivers. These findings highlight the critical role of managing soil physicochemical properties to regulate nitrogen transformations in forest soils. Effective forest management should focus on precisely adjusting the thinning intensity to enhance the soil physicochemical conditions, thereby promoting more efficient nitrogen cycling and improving forest ecosystem health in subtropical regions.

Patterns and drivers of atmospheric nitrogen deposition retention in global forests

Forests are the largest carbon sink in terrestrial ecosystems, and the impact of nitrogen (N) deposition on this carbon sink depends on the fate of external N inputs. However, the patterns and driving factors of N retention in different forest compartments remain elusive. In this study, we synthesized 408 observations from global forest 15N tracer experiments to reveal the variation and underlying mechanisms of 15N retention in plants and soils. The results showed that the average total ecosystem 15N retention in global forests was 63.04 ± 1.23%, with the soil pool being the main N sink (45.76 ± 1.29%). Plants absorbed 17.28 ± 0.83% of 15N, with more allocated to leaves (5.83 ± 0.63%) and roots (5.84 ± 0.44%). In subtropical and tropical forests, 15N was mainly absorbed by plants and mineral soils, while the organic soil layer in temperate forests retained more 15N. Additionally, forests retained moreN 15 H 4 + $$ {}^{15}\mathrm{N}{\mathrm{H}}_4^{+} $$ thanN 15 O 3 - $$ {}^{15}\mathrm{N}{\mathrm{O}}_3^{-} $$ , primarily due to the stronger capacity of the organic soil layer to retainN 15 H 4 + $$ {}^{15}\mathrm{N}{\mathrm{H}}_4^{+} $$ . The mechanisms of 15N retention varied among ecosystem compartments, with total ecosystem 15N retention affected by N deposition. Plant 15N retention was influenced by vegetative and microbial nutrient demands, while soil 15N retention was regulated by climate factors and soil nutrient supply. Overall, this study emphasizes the importance of climate and nutrient supply and demand in regulating forest N retention and provides data to further explore the impacts of N deposition on forest carbon sequestration.

Canopy nitrogen addition and understory removal destabilize the microbial community in a subtropical Chinese fir plantation

Subtropical Chinese fir plantations have been experiencing increased nitrogen deposition and understory management because of human activities. Nevertheless, effect of increased nitrogen deposition and understory removal in the plantations on microbial community stability and the resulting consequences for ecosystem functioning is still unclear. We carried out a 5-year experiment of canopy nitrogen addition (2.5 g N m-2 year-1), understory removal, and their combination to assess their influences on microbial community stability and functional potentials in a subtropical Chinese fir plantation. Nitrogen addition, understory removal, and their combination reduced soil bacterial diversity (OUT richness, Inverse Simpson index, Shannon index, and phylogenetic diversity) by 11-18%, 15-24%, and 19-31%; reduced fungal diversity indexes by 3-5%, 5-6%, and 5-7%, respectively. We found that environmental filtering and interspecific interactions together determined changes in bacterial community stability, while changes in fungal community stability were mainly caused by environmental filtering. Fungi were more stable than bacteria under disturbances, possibly from having a more stable network structure. Furthermore, we found that microbial community stability was linked to changes in microbial community functional potentials. Importantly, we observed synergistic interactions between understory removal and nitrogen addition on bacterial diversity, network structure, and community stability. These findings suggest that understory plants play a significant role in promoting soil microbial community stability in subtropical Chinese fir plantations and help to mitigate the negative impacts of nitrogen addition. Hence, it is crucial to retain understory vegetation as important components of subtropical plantations.

Metagenomic analysis reveals the microbial response to petroleum contamination in oilfield soils

The response of the microbes to total petroleum hydrocarbons (TPHs) in three types of oilfield soils was researched using metagenomic analysis. The ranges of TPH concentrations in the grassland, abandoned well, working well soils were 1.16 × 102-3.50 × 102 mg/kg, 1.14 × 103-1.62 × 104 mg/kg, and 5.57 × 103-3.33 × 104 mg/kg, respectively. The highest concentration of n-alkanes and 16 PAHs were found in the working well soil of Shengli (SL) oilfield compared with those in Nanyang (NY) and Yanchang (YC) oilfields. The abandoned well soils showed a greater extent of petroleum biodegradation than the grassland and working well soils. Α-diversity indexes based on metagenomic taxonomy showed higher microbial diversity in grassland soils, whereas petroleum-degrading microbes Actinobacteria and Proteobacteria were more abundant in working and abandoned well soils. RDA demonstrated that low moisture content (MOI) in YC oilfield inhibited the accumulation of the petroleum-degrading microbes. Synergistic networks of functional genes and Spearman's correlation analysis showed that heavy petroleum contamination (over 2.10 × 104 mg/kg) negatively correlated with the abundance of the nitrogen fixation genes nifHK, however, in grassland soils, low petroleum content facilitated the accumulation of nitrogen fixation genes. A positive correlation was observed between the abundance of petroleum-degrading genes and denitrification genes (bphAa vs. nirD, todC vs. nirS, and nahB vs. nosZ), whereas a negative correlation was observed between alkB (alkane- degrading genes) and amo (ammonia oxidation), hao (nitrification). The ecotoxicity of petroleum contamination, coupled with petroleum hydrocarbons (PH) degradation competing with nitrifiers for ammonia inhibited ammonia oxidation and nitrification, whereas PH metabolism promoted the denitrification process. Moreover, positive correlations were observed between the abundance of amo gene and MOI, as well as between the abundance of the dissimilatory nitrate reduction gene nirA and clay content. Thus, improving the soil physicochemical properties is a promising approach for decreasing nitrogen loss and alleviating petroleum contamination in oilfield soils.

Land Use Change from Natural Tropical Forests to Managed Ecosystems Reduces Gross Nitrogen Production Rates and Increases the Soil Microbial Nitrogen Limitation

Understanding the underlying mechanisms of soil microbial nitrogen (N) utilization under land use change is critical to evaluating soil N availability or limitation and its environmental consequences. A combination of soil gross N production and ecoenzymatic stoichiometry provides a promising avenue for nutrient limitation assessment in soil microbial metabolism. Gross N production via 15N tracing and ecoenzymatic stoichiometry through the vector and threshold element ratio (Vector-TER) model were quantified to evaluate the soil microbial N limitation in response to land use changes. We used tropical soil samples from a natural forest ecosystem and three managed ecosystems (paddy, rubber, and eucalyptus sites). Soil extracellular enzyme activities were significantly lower in managed ecosystems than in a natural forest. The Vector-TER model results indicated microbial carbon (C) and N limitations in the natural forest soil, and land use change from the natural forest to managed ecosystems increased the soil microbial N limitation. The soil microbial N limitation was positively related to gross N mineralization (GNM) and nitrification (GN) rates. The decrease in microbial biomass C and N as well as hydrolyzable ammonium N in managed ecosystems led to the decrease in N-acquiring enzymes, inhibiting GNM and GN rates and ultimately increasing the microbial N limitation. Soil GNM was also positively correlated with leucine aminopeptidase and β-N-acetylglucosaminidase. The results highlight that converting tropical natural forests to managed ecosystems can increase the soil microbial N limitation through reducing the soil microbial biomass and gross N production.

Long-term nitrogen and phosphorus addition have stronger negative effects on microbial residual carbon in subsoils than topsoils in subtropical forests

Highly weathered lowland (sub)tropical forests are widely recognized as nitrogen (N)-rich and phosphorus (P)-poor, and the input of N and P affects soil carbon (C) cycling and storage in these ecosystems. Microbial residual C (MRC) plays a crucial role in regulating soil organic C (SOC) stability in forest soils. However, the effects of long-term N and P addition on soil MRC across different soil layers remain unclear. This study conducted a 12-year N and P addition experiment in two typical subtropical plantation forests dominated by Acacia auriculiformis and Eucalyptus urophylla trees, respectively. We measured plant C input (fine root biomass, fine root C, and litter C), microbial community structure, enzyme activity (C/N/P-cycling enzymes), mineral properties, and MRC. Our results showed that continuous P addition reduced MRC in the subsoil (20-40 cm) of both plantations (A. auriculiformis: 28.44% and E. urophylla: 28.29%), whereas no significant changes occurred in the topsoil (0-20 cm). N addition decreased MRC in the subsoil of E. urophylla (25.44%), but had no significant effects on A. auriculiformis. Combined N and P addition reduced MRC (34.63%) in the subsoil of A. auriculiformis but not in that of E. urophylla. The factors regulating MRC varied across soil layers. In the topsoil (0-10 cm), plant C input (the relative contributions to the total variance was 20%, hereafter) and mineral protection (47.2%) were dominant factors. In the soil layer of 10-20 cm, both microbial characteristics (41.3%) and mineral protection (32.3%) had substantial effects, whereas the deeper layer (20-40 cm) was predominantly regulated by microbial characteristics (37.9%) and mineral protection (18.8%). Understanding differential drivers of MRC across soil depth, particularly in deeper soil layers, is crucial for accurately predicting the stability and storage of SOC and its responses to chronic N enrichment and/or increased P limitation in (sub)tropical forests.

Microbial controls over soil priming effects under chronic nitrogen and phosphorus additions in subtropical forests

The soil priming effect (PE), defined as the modification of soil organic matter decomposition by labile carbon (C) inputs, is known to influence C storage in terrestrial ecosystems. However, how chronic nutrient addition, particularly in leguminous and non-leguminous forests, will affect PE through interaction with nutrient (e.g., nitrogen and phosphorus) availability is still unclear. Therefore, we collected soils from leguminous and non-leguminous subtropical plantations across a suite of historical nutrient addition regimes. We added 13C-labeled glucose to investigate how background soil nutrient conditions and microbial communities affect priming and its potential microbial mechanisms. Glucose addition increased soil organic matter decomposition and prompted positive priming in all soils, regardless of dominant overstory tree species or fertilizer treatment. In non-leguminous soil, only combined nitrogen and phosphorus addition led to a higher positive priming than the control. Conversely, soils beneath N-fixing leguminous plants responded positively to P addition alone, as well as to joint NP addition compared to control. Using DNA stable-isotope probing, high-throughput quantitative PCR, enzyme assays and microbial C substrate utilization, we found that positive PE was associated with increased microbial C utilization, accompanied by an increase in microbial community activity, nutrient-related gene abundance, and enzyme activities. Our findings suggest that the balance between soil available N and P effects on the PE,  was dependent on rhizosphere microbial community composition. Furthermore, these findings highlight the roles of the interaction between plants and their symbiotic microbial communities in affecting soil priming and improve our understanding of the potential microbial pathways underlying soil PEs.

Nitrogen Journey in Plants: From Uptake to Metabolism, Stress Response, and Microbe Interaction

Plants uptake and assimilate nitrogen from the soil in the form of nitrate, ammonium ions, and available amino acids from organic sources. Plant nitrate and ammonium transporters are responsible for nitrate and ammonium translocation from the soil into the roots. The unique structure of these transporters determines the specificity of each transporter, and structural analyses reveal the mechanisms by which these transporters function. Following absorption, the nitrogen metabolism pathway incorporates the nitrogen into organic compounds via glutamine synthetase and glutamate synthase that convert ammonium ions into glutamine and glutamate. Different isoforms of glutamine synthetase and glutamate synthase exist, enabling plants to fine-tune nitrogen metabolism based on environmental cues. Under stressful conditions, nitric oxide has been found to enhance plant survival under drought stress. Furthermore, the interaction between salinity stress and nitrogen availability in plants has been studied, with nitric oxide identified as a potential mediator of responses to salt stress. Conversely, excessive use of nitrate fertilizers can lead to health and environmental issues. Therefore, alternative strategies, such as establishing nitrogen fixation in plants through diazotrophic microbiota, have been explored to reduce reliance on synthetic fertilizers. Ultimately, genomics can identify new genes related to nitrogen fixation, which could be harnessed to improve plant productivity.