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Yan SH, Wang XL, Sun ZM, Xia BM, Gu WH, Wang GC. Study of epiphytic non-geniculate coralline algae Reveals an Evolutionarily significant Genus, Pseudoderma gen. nov. (Lithophylloideae, Corallinophycidae). Mol Phylogenet Evol 2025; 206:108313. [PMID: 39993488 DOI: 10.1016/j.ympev.2025.108313] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/12/2024] [Revised: 01/28/2025] [Accepted: 02/20/2025] [Indexed: 02/26/2025]
Abstract
Epiphytic non-geniculate coralline algae (ENCA) are distributed broadly, while limited research on their diversity has constrained our understanding of their ecological roles in marine environments, and impeded a comprehensive understanding of coralline algae. In this study, the diversity and ecological characteristics of ENCA epiphytic on 113 red macroalgal specimens collected from coastal China were examined. Three species delimitation algorithms revealed 24 primary species hypotheses (PSH), of which 22 were corroborated through phylogenetic analysis based on the psbA gene. Further multi-gene concatenated phylogenetic analyses and morpho-anatomical assessments revealed a new genus within Lithophylloideae, Pseudoderma gen. nov., which is closely related to the genus Titanoderma and exhibits morphological similarities. A hypothesis concerning the growth patterns was proposed to elucidate the morphological differences among Titanoderma, Lithophyllum, and Pseudoderma: the presence or absence of hypothallial palisade cells indicated distinct thallus thickening patterns, either dominated by elongation of the hypothallial cells or by division of the perithallial cells. These processes resulted in fast-growing thin-crust thalli or longer-lasting thick-crust thalli, adapted to epiphytic or epilithic lifestyles, respectively. Pseudoderma included at least six new taxa, and Pseudoderma sinicarum sp. nov., was designated as the holotype species of this genus. In conclusion, this study has underscored the unexpected biodiversity of ENCA, and the identification of the novel genus Pseudoderma from ENCA groups carried significant evolutionary implications for enhancing our understanding of coralline algae systematics.
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Affiliation(s)
- Shu-Heng Yan
- Key Laboratory of Breeding Biotechnology and Sustainable Aquaculture (CAS), Qingdao, 266071, China; Laboratory for Marine Biology and Biotechnology, Qingdao Marine Science and Technology Center, Qingdao, 266071, China; Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China; University of Chinese Academy of Sciences, Beijing, 100049, China
| | - Xu-Lei Wang
- Key Laboratory of Breeding Biotechnology and Sustainable Aquaculture (CAS), Qingdao, 266071, China; Laboratory for Marine Biology and Biotechnology, Qingdao Marine Science and Technology Center, Qingdao, 266071, China; Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China.
| | - Zhong-Min Sun
- University of Chinese Academy of Sciences, Beijing, 100049, China; Department of Marine Organism Taxonomy and Phylogeny, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China
| | - Bang-Mei Xia
- Department of Marine Organism Taxonomy and Phylogeny, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China
| | - Wen-Hui Gu
- Key Laboratory of Breeding Biotechnology and Sustainable Aquaculture (CAS), Qingdao, 266071, China; Laboratory for Marine Biology and Biotechnology, Qingdao Marine Science and Technology Center, Qingdao, 266071, China; Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China
| | - Guang-Ce Wang
- Key Laboratory of Breeding Biotechnology and Sustainable Aquaculture (CAS), Qingdao, 266071, China; Laboratory for Marine Biology and Biotechnology, Qingdao Marine Science and Technology Center, Qingdao, 266071, China; Shandong Province Key Laboratory of Experimental Marine Biology, Institute of Oceanology, Chinese Academy of Sciences, Qingdao, 266071, China.
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Pinna F, Ragazzola F, Piazzi L, Evans D, Raddatz J, Ceccherelli G. Crustose coralline algae exhibit complex responses to breakage under current and future climate scenarios. MARINE POLLUTION BULLETIN 2024; 209:117219. [PMID: 39515286 DOI: 10.1016/j.marpolbul.2024.117219] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Revised: 09/19/2024] [Accepted: 10/27/2024] [Indexed: 11/16/2024]
Abstract
Rising pressures from local and global stressors on marine benthic habitats require understanding of their effects on habitat forming species like Crustose Coralline Algae (CCA), which play a crucial role in ecosystem diversity and structure. Here, the impact of mechanical damage and warming on the CCA species Lithophyllum stictiforme was investigated in the Mediterranean Sea using a manipulative field transplant experiment that takes advantage of temperature variations between depths of 35 m and 15 m as proxies for current and future climate scenarios. A significant effect of mechanical damage and warming on the growth angle of the thalli was detected, while no interactive effects on the other biological traits were observed. Higher temperatures increased Mg/Ca ratio in untouched thalli, but mechanical damage disrupted this pattern in broken samples. Overall, our findings highlight the resilience of thalli to warming but demonstrate suffering from mechanical damage, underlining the need for effective benthic habitat management.
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Affiliation(s)
- Federico Pinna
- Department of Integrative Marine Ecology, Genova Marine Centre, Stazione Zoologica Anton Dohrn, Genova, Italy; Department of Chemical, Physical, Mathematical and Natural Sciences, University of Sassari, Sassari, Italy.
| | - Federica Ragazzola
- Department of Integrative Marine Ecology, Genova Marine Centre, Stazione Zoologica Anton Dohrn, Genova, Italy
| | - Luigi Piazzi
- Department of Chemical, Physical, Mathematical and Natural Sciences, University of Sassari, Sassari, Italy
| | - David Evans
- FIERCE - Frankfurt Isotope and Element Research Center, Goethe University Frankfurt, Frankfurt am Main, Germany; Current address: School of Ocean and Earth Science, University of Southampton, Southampton, UK
| | - Jacek Raddatz
- FIERCE - Frankfurt Isotope and Element Research Center, Goethe University Frankfurt, Frankfurt am Main, Germany; GEOMAR - Helmholtz Centre for Ocean Research, Germany
| | - Giulia Ceccherelli
- Department of Chemical, Physical, Mathematical and Natural Sciences, University of Sassari, Sassari, Italy
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3
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Zheng D, Zou L, Zou J, Li Q, Lu S. Refining taxonomic identification of microalgae through molecular and genetic evolution: a case study of Prorocentrum lima and Prorocentrum arenarium. Microbiol Spectr 2024; 12:e0236723. [PMID: 38572997 PMCID: PMC11064606 DOI: 10.1128/spectrum.02367-23] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Accepted: 02/08/2024] [Indexed: 04/05/2024] Open
Abstract
Species delimitation based on lineage definition has become increasingly popular. However, these methods have been limited, especially for species that lack genomic data and are morphologically similar. The trickiest part for the species identification is that the interspecific and intraspecific boundaries are vague. Taking Prorocentrum (Dinophyta) as an example, analysis of cell morphology, growth, and toxin synthesis in both species of P. lima and P. arenarium does not provide a reliable basis for species delineation. However, through phylogenetic and genetic distance analyses of their ITS and LSU sequences, establishment of evolutionary tree based on orthologous gene sequences, and combining the results of automatic barcode gap discovery and Poisson tree processes models, it was sustained that P. arenarium does not belong to the P. lima complex and should be considered as an independent species. Interspecies genetic evolution analysis revealed that P. lima and P. arenarium may contribute to evolutionary direction that favors combating reverse environmental factors. In P. lima, viral invasion may be one of the reasons for its large genome size. In the study, P. lima complex has been selected as an example to enhance the taxonomic identification of microalgae through molecular and genetic evolution, offering valuable insights into refining taxonomic identification and promoting microbial biodiversity research in other species.IMPORTANCEMicroalgae, especially the species known as Prorocentrum, have received significant attention due to their ability to trigger harmful algal blooms and produce toxins. However, the boundaries between species and within species are ambiguous. Clear and comprehensive species delineation indicates that Prorocentrum arenarium should be considered as an independent species, separate from the Prorocentrum lima complex. Improving the classification and identification of microalgae through molecular and genetic evolution will provide reference points for other cryptic species. Prorocentrum occupy multiple ecological niches in marine environments, and studying their evolutionary direction contributes to understanding their ecological adaptations and community succession.
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Affiliation(s)
- Danlin Zheng
- College of Life Science and Technology, and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Jinan University, Guangzhou, China
| | - Ligong Zou
- College of Life Science and Technology, and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Jinan University, Guangzhou, China
| | - Jian Zou
- College of Life Science and Technology, and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Jinan University, Guangzhou, China
| | - Qun Li
- College of Life Science and Technology, and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Jinan University, Guangzhou, China
| | - Songhui Lu
- College of Life Science and Technology, and Southern Marine Science and Engineering Guangdong Laboratory (Zhuhai), Jinan University, Guangzhou, China
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Jeong SY, Gabrielson PW, Hughey JR, Hoey AS, Cho TO, Abdul Wahab MA, Diaz-Pulido G. New branched Porolithon species (Corallinales, Rhodophyta) from the Great Barrier Reef, Coral Sea, and Lord Howe Island. JOURNAL OF PHYCOLOGY 2023; 59:1179-1201. [PMID: 37770245 DOI: 10.1111/jpy.13387] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/14/2023] [Revised: 08/06/2023] [Accepted: 08/08/2023] [Indexed: 09/30/2023]
Abstract
Porolithon is one of the most ecologically important genera of tropical and subtropical crustose (non-geniculate) coralline algae growing abundantly along the shallow margins of coral reefs and functioning to cement reef frameworks. Thalli of branched, fruticose Porolithon specimens from the Indo-Pacific Ocean traditionally have been called P. gardineri, while massive, columnar forms have been called P. craspedium. Sequence comparisons of the rbcL gene both from type specimens of P. gardineri and P. craspedium and from field-collected specimens demonstrate that neither species is present in east Australia and instead resolve into four unique genetic lineages. Porolithon howensis sp. nov. forms columnar protuberances and loosely attached margins and occurs predominantly at Lord Howe Island; P. lobulatum sp. nov. has fruticose to clavate forms and free margins that are lobed and occurs in the Coral Sea and on the Great Barrier Reef (GBR); P. parvulum sp. nov. has short (<2 cm), unbranched protuberances and attached margins and is restricted to the central and southern GBR; and P. pinnaculum sp. nov. has a mountain-like, columnar morphology and occurs on oceanic Coral Sea reefs. A rbcL gene sequence of the isotype of P. castellum demonstrates it is a different species from other columnar species. In addition to the diagnostic rbcL and psbA marker sequences, the four new species may be distinguished by a combination of features including thallus growth form, margin shape (attached or unattached), and medullary system (coaxial or plumose). Porolithon species, because of their ecological importance and sensitivity to ocean acidification, need urgent documentation of their taxonomic diversity.
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Affiliation(s)
- So Young Jeong
- Australian Rivers Institute-Coast & Estuaries and Coastal and Marine Research Centre, School of Environment and Science, Nathan Campus, Griffith University, Nathan, Queensland, Australia
| | - Paul W Gabrielson
- Biology Department and Herbarium, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, USA
| | - Jeffery R Hughey
- Division of Mathematics, Science, and Engineering, Hartnell College, Salinas, California, USA
| | - Andrew S Hoey
- ARC Centre of Excellence for Coral Reef Studies and College of Science and Engineering, James Cook University, Townsville, Queensland, Australia
| | - Tae Oh Cho
- Department of Life Science, Chosun University, Gwangju, South Korea
| | | | - Guillermo Diaz-Pulido
- Coastal and Marine Research Centre, School of Environment and Science, Nathan Campus, Griffith University, Nathan, Queensland, Australia
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5
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Wade RM, Gabrielson PW, Hind KR, Shivak J, Hughey JR, Ohtsu S, Baba M, Kogame K, Lindstrom SC, Miller KA, Schipper SR, Martone PT. Resolving some of the earliest names for Corallina species (Corallinales, Rhodophyta) in the North Pacific by sequencing type specimens and describing the cryptic C. hakodatensis sp. nov. and C. parva sp. nov. JOURNAL OF PHYCOLOGY 2023; 59:221-235. [PMID: 36336979 DOI: 10.1111/jpy.13299] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/21/2022] [Accepted: 10/24/2022] [Indexed: 06/16/2023]
Abstract
Partial rbcL sequences from type specimens of three of the earliest described Corallina species showed that C. arbuscula (type locality: Unalaska Island, Alaska, USA) and C. pilulifera (type locality: Okhotsk Sea, Russia) are synonymous, with C. pilulifera as the taxonomically accepted name and that C. vancouveriensis (type locality: Botanical Beach, Vancouver Island, Canada) is a distinct species. To identify molecular species limits and clarify descriptions and distributions of C. pilulifera and C. vancouveriensis, we sequenced and analyzed portions of one mitochondrial and two plastid genes from historical and recent collections. The single-gene phylogenetic reconstructions support the recognition of both species as distinct, as well as two additional species, C. hakodatensis sp. nov. and C. parva sp. nov., which are sister to, and often morphologically indistinguishable from C. pilulifera and C. vancouveriensis, respectively. DNA sequence data currently illustrate that C. pilulifera is found in the cold northern Pacific waters from the Okhotsk Sea of Russia to Hokkaido, Japan, eastward across the Aleutian Islands to Knoll Head, Alaska, and as far south as Nanaimo, British Columbia. Corallina vancouveriensis is distributed as far west as Attu Island in the Aleutian Islands to Sitka, Alaska, and southeasterly at numerous sites from British Columbia to the north of Point Conception, California, USA. The cryptic species C. hakodatensis and C. parva occur sympatrically with their sister species but with narrower ranges. The complex phylogenetic relationships shown by the single gene trees recommend Corallina as a model genus to explore coralline algal biogeography, evolution, and patterns of speciation.
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Affiliation(s)
- Rachael M Wade
- Department of Botany and Biodiversity Research Centre, University of British Columbia, 3156-6270 University Blvd, Vancouver, British Columbia, V6T 1Z4, Canada
| | - Paul W Gabrielson
- Biology Department and Herbarium, Coker Hall CB 3280, Chapel Hill, North Carolina, 27599-3280, USA
| | - Katharine R Hind
- Department of Biology, University of Victoria, 3800 Finnerty Road, Victoria, British Columbia, V8P 5C2, Canada
| | - Jade Shivak
- Department of Botany, University of British Columbia, 3529-6270 University Blvd, Vancouver, British Columbia, V6T 1Z4, Canada
| | - Jeffery R Hughey
- Division of Mathematics, Science, and Engineering, Hartnell College, 411 Central Ave., Salinas, California, 93901, USA
| | - Sou Ohtsu
- Department of Natural History Sciences, Graduate School of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Masasuke Baba
- Central Laboratory, Marine Ecology Institute, 300 Iwawada, Onjuku-machi, Isumi-gun, Chiba, 299-5105, Japan
| | - Kazuhiro Kogame
- Department of Biological Sciences, Faculty of Science, Hokkaido University, Sapporo, 060-0810, Japan
| | - Sandra C Lindstrom
- Department of Botany and Biodiversity Research Centre, University of British Columbia, 3156-6270 University Blvd, Vancouver, British Columbia, V6T 1Z4, Canada
| | - Kathy Ann Miller
- University Herbarium, University of California at Berkeley, 1001 Valley Life Sciences Building #2465, Berkeley, California, 94720-2465, USA
| | - Soren R Schipper
- Department of Botany and Biodiversity Research Centre, University of British Columbia, 3156-6270 University Blvd, Vancouver, British Columbia, V6T 1Z4, Canada
| | - Patrick T Martone
- Department of Botany and Biodiversity Research Centre, University of British Columbia, 3156-6270 University Blvd, Vancouver, British Columbia, V6T 1Z4, Canada
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6
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Rancel-Rodríguez NM, Afonso-Carrillo J, Tronholm A, Sansón M. A New Species from the Canary Islands Increases the Diversity of the Red Algal Genus Pterocladiella in the Northeastern Atlantic. PLANTS (BASEL, SWITZERLAND) 2023; 12:416. [PMID: 36679129 PMCID: PMC9866342 DOI: 10.3390/plants12020416] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 11/28/2022] [Revised: 01/05/2023] [Accepted: 01/10/2023] [Indexed: 06/17/2023]
Abstract
Environmental and human factors are inducing a drastic decline in many marine algae in regions with a high floristic richness as in the Canary Islands. Simultaneously, undescribed algal species continue to be discovered, suggesting a probable loss in diversity, before being properly identified and catalogued. Turf-forming Gelidiales occur in marine littoral communities from tropical to warm temperate regions and are challenging to identify correctly because of their small size and simple morphology. In the present study, we combined morphological and molecular phylogenetics methods to study a turf-forming species of the genus Pterocladiella from the Canary Islands (NE Atlantic). Both cox1 and rbcL gene analyses revealed a novel species described here, Pterocladiella canariensis sp. nov. The new species has no single unique morphological feature, but it is different by a distinctive combination of attributes, namely, minute size less than 18 mm in height, ribbon-like erect axes, small polygonal cortical cells, cystocarp circular in outline with placental tissue attached to the floor, spermatangial sori with sterile margins with spermatangia simultaneously formed on both sides of the blade, and tetrasporangia arranged in V-shaped rows. Phylogenies inferred from cox1 and concatenated genes (cox1 + rbcL) suggest a link to only two Pterocladiella species endemic to South Africa and Madagascar; nevertheless, the rbcL gene establishes P. canariensis as the earliest divergent lineage of the genus.
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Affiliation(s)
- Nereida M. Rancel-Rodríguez
- Departamento de Botánica, Ecología y Fisiología Vegetal, Facultad de Ciencias, Sección Biología, Universidad de La Laguna, Avenida Astrofísico Francisco Sánchez, 38206 La Laguna, Spain
| | - Julio Afonso-Carrillo
- Departamento de Botánica, Ecología y Fisiología Vegetal, Facultad de Ciencias, Sección Biología, Universidad de La Laguna, Avenida Astrofísico Francisco Sánchez, 38206 La Laguna, Spain
| | - Ana Tronholm
- Departamento de Botánica, Ecología y Fisiología Vegetal, Facultad de Ciencias, Sección Biología, Universidad de La Laguna, Avenida Astrofísico Francisco Sánchez, 38206 La Laguna, Spain
- Department of Biological and Environmental Sciences, University of Gothenburg, P.O. Box 461, 405 30 Göteborg, Sweden
- Gothenburg Global Biodiversity Centre, P.O. Box 461, 405 30 Göteborg, Sweden
| | - Marta Sansón
- Departamento de Botánica, Ecología y Fisiología Vegetal, Facultad de Ciencias, Sección Biología, Universidad de La Laguna, Avenida Astrofísico Francisco Sánchez, 38206 La Laguna, Spain
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Natural Astaxanthin Is a Green Antioxidant Able to Counteract Lipid Peroxidation and Ferroptotic Cell Death. Int J Mol Sci 2022; 23:ijms232315137. [PMID: 36499464 PMCID: PMC9737268 DOI: 10.3390/ijms232315137] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/28/2022] [Revised: 11/22/2022] [Accepted: 11/24/2022] [Indexed: 12/04/2022] Open
Abstract
Astaxanthin is a red orange xanthophyll carotenoid produced mainly by microalgae but which can also be chemically synthesized. As demonstrated by several studies, this lipophilic molecule is endowed with potent antioxidant properties and is able to modulate biological functions. Unlike synthetic astaxanthin, natural astaxanthin (NAst) is considered safe for human nutrition, and its production is considered eco-friendly. The antioxidant activity of astaxanthin depends on its bioavailability, which, in turn, is related to its hydrophobicity. In this study, we analyzed the water-solubility of NAst and assessed its protective effect against oxidative stress by means of different approaches using a neuroblastoma cell model. Moreover, due to its highly lipophilic nature, astaxanthin is particularly protective against lipid peroxidation; therefore, the role of NAst in counteracting ferroptosis was investigated. This recently discovered process of programmed cell death is indeed characterized by iron-dependent lipid peroxidation and seems to be linked to the onset and development of oxidative-stress-related diseases. The promising results of this study, together with the "green sources" from which astaxanthin could derive, suggest a potential role for NAst in the prevention and co-treatment of chronic degenerative diseases by means of a sustainable approach.
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Basso D, Piazza G, Bracchi VA. Calcification traits for cryptic species identification: Insights into coralline biomineralization. PLoS One 2022; 17:e0273505. [PMID: 36190996 PMCID: PMC9529143 DOI: 10.1371/journal.pone.0273505] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Accepted: 08/09/2022] [Indexed: 11/06/2022] Open
Abstract
Calcareous red algae are foundation species and ecosystem engineers with a global distribution. The principles governing their calcification pathways are still debated and the morphological characters are frequently unreliable for species segregation, as shown by molecular genetics. The recent description of the new species Lithophyllum pseudoracemus, previously undetected and morphologically confused with Lithophyllum racemus, offered a challenging opportunity to test the effectiveness of microanatomy and ultrastructural calcification traits as tools for the identification of these two species, for integrative taxonomy. High resolution SEM images of molecularly identified samples showed that the different size of the perithallial cells and the features of the asexual conceptacle chambers may contribute to the separation of the two species. The two species share the same crystallite morphology in the primary and secondary cell-wall calcification, as previously described in other species belonging to the same clade. However, the perithallial secondary calcification was significantly thicker in L. racemus than in L. pseudoracemus. We described a granular calcified layer in the innermost part of the cell wall, as a putative precursor phase in the biomineralization and formation of the secondary calcification. The hypothesis of different pathways for the formation of the primary and secondary calcification is supported by the observed cell elongation associated with thicker and higher Mg/Ca primary calcification, the inverse correlation of primary and secondary calcification thickness, and the absence of primary calcification in the newly formed wall cutting off an epithallial cell from the meristem.
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Affiliation(s)
- Daniela Basso
- Department of Earth and Environmental Sciences, University of Milano-Bicocca, Milan, Italy
- CoNISMa Research Unit of Milano-Bicocca, Milano, Italy
- * E-mail:
| | - Giulia Piazza
- Department of Earth and Environmental Sciences, University of Milano-Bicocca, Milan, Italy
- Department of Earth and Ocean Dynamics, University of Barcelona, Barcelona, Spain
| | - Valentina Alice Bracchi
- Department of Earth and Environmental Sciences, University of Milano-Bicocca, Milan, Italy
- CoNISMa Research Unit of Milano-Bicocca, Milano, Italy
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Rendina F, Buonocore E, di Montanara AC, Russo G. The scientific research on rhodolith beds: A review through bibliometric network analysis. ECOL INFORM 2022. [DOI: 10.1016/j.ecoinf.2022.101738] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
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10
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Boo GH, Leliaert F, Le Gall L, Coppejans E, De Clerck O, Van Nguyen T, Payri CE, Miller KA, Yoon HS. Ancient Tethyan Vicariance and Long-Distance Dispersal Drive Global Diversification and Cryptic Speciation in the Red Seaweed Pterocladiella. FRONTIERS IN PLANT SCIENCE 2022; 13:849476. [PMID: 35720545 PMCID: PMC9201827 DOI: 10.3389/fpls.2022.849476] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/06/2022] [Accepted: 05/13/2022] [Indexed: 05/27/2023]
Abstract
We investigated the globally distributed red algal genus Pterocladiella, comprising 24 described species, many of which are economically important sources of agar and agarose. We used DNA-based species delimitation approaches, phylogenetic, and historical biogeographical analyses to uncover cryptic diversity and infer the drivers of biogeographic patterns. We delimited 43 species in Pterocladiella, of which 19 are undescribed. Our multigene time-calibrated phylogeny and ancestral area reconstruction indicated that Pterocladiella most likely originated during the Early Cretaceous in the Tethys Sea. Ancient Tethyan vicariance and long-distance dispersal have shaped current distribution patterns. The ancestor of Eastern Pacific species likely arose before the formation of the formidable Eastern Pacific Barrier-a first confirmation using molecular data in red algae. Divergences of Northeast and Southeast Pacific species have been driven by the Central American Seaway barrier, which, paradoxically, served as a dispersal pathway for Atlantic species. Both long- and short-distance dispersal scenarios are supported by genetic relationships within cosmopolitan species based on haplotype analysis. Asymmetrical distributions and the predominance of peripatry and sympatry between sister species suggest the importance of budding speciation in Pterocladiella. Our study highlights the underestimation of global diversity in these crucial components of coastal ecosystems and provides evidence for the complex evolution of current species distributions.
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Affiliation(s)
- Ga Hun Boo
- Department of Biological Sciences, Sungkyunkwan University, Suwon, South Korea
- Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum National d’Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Paris, France
- University Herbarium, University of California, Berkeley, CA, United States
| | - Frederik Leliaert
- Meise Botanic Garden, Meise, Belgium
- Phycology Research Group, Department of Biology, Ghent University, Ghent, Belgium
| | - Line Le Gall
- Institut de Systématique, Evolution, Biodiversité (ISYEB), Muséum National d’Histoire Naturelle, CNRS, Sorbonne Université, EPHE, Paris, France
| | - Eric Coppejans
- Phycology Research Group, Department of Biology, Ghent University, Ghent, Belgium
| | - Olivier De Clerck
- Phycology Research Group, Department of Biology, Ghent University, Ghent, Belgium
| | - Tu Van Nguyen
- Department of Ecology, Institute of Tropical Biology, Vietnam Academy of Science and Technology, Ho Chi Minh City, Vietnam
| | - Claude E. Payri
- UMR Entropie (IRD, Ifremer, Univ Nouvelle-Calédonie, Univ La Réunion, CNRS), Nouméa, New Caledonia
| | - Kathy Ann Miller
- University Herbarium, University of California, Berkeley, CA, United States
| | - Hwan Su Yoon
- Department of Biological Sciences, Sungkyunkwan University, Suwon, South Korea
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11
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Rindi F, Gavio B, Pezzolesi L, Pica D, Ponti M, Torsani F, Cerrano C. Spring composition of the macroalgal vegetation of a small offshore island in the north-western Mediterranean (Gallinara Island, Ligurian Sea). ITALIAN BOTANIST 2022. [DOI: 10.3897/italianbotanist.13.81812] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/12/2022] Open
Abstract
Gallinara Island, a small island located 1.5 km off the shore of Liguria (Italy, north-western Mediterranean Sea) was included in a list of proposed Marine Protected Areas (MPA) in the early 90s. Since then, its benthic assemblages have been studied in detail and the main macrophytic communities have been mapped. A detailed assessment of its benthic macroalgal flora, however, has never been made. Gallinara was visited in the course of 5 consecutive years and its macroalgal flora was studied based on collections made by snorkelling and SCUBA diving. Overall, 141 macroalgal taxa were collected and identified (23 Chlorophyta, 94 Rhodophyta, 24 Ochrophyta); 91 of them represent new records for the island. One of the most notable new records is the non-indigenous red alga Womersleyella setacea, previously unreported from the island and widely distributed, particularly on the south-eastern shore. Observations made in the course of the surveys confirm the rarefaction of some large-sized brown algae (particularly Sargassum vulgare) but indicate also that others previously reported as rare (Cystoseira compressa, Dictyopteris polypodioides) are still common on the island.
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12
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Zhan SH, Chen L, Liao CP, Chang WR, Li CC, Tang GY, Liou CY, Wang WL, Wang SW, Liu SL. Geographic distance, sedimentation, and substrate shape cryptic crustose coralline algal assemblages in the world's largest subtropical intertidal algal reef. Mol Ecol 2022; 31:3056-3071. [PMID: 35377521 DOI: 10.1111/mec.16455] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/21/2022] [Revised: 03/14/2022] [Accepted: 03/28/2022] [Indexed: 11/30/2022]
Abstract
Algal reefs, concreted by crustose coralline algae (CCA), are the main biotic reefs in temperate waters but rare in the subtropics and tropics. The world's largest known intertidal algal reef in the subtropics is the Taoyuan Algal Reef (TAR) located in the northwestern coast of Taiwan. The biodiversity and ecology of the TAR are scarcely explored, and now the reef is imperiled by industrialization. Here, we document cryptic species of CCA in Taiwan, particularly the TAR, by sequencing the psbA genes of over 1,800 specimens collected across Taiwan. We also examine the ecological background of the TAR by surveying its benthic composition and measuring its environmental parameters. Our data reveal that the TAR harbors a high diversity of cryptic CCA species (27 molecular operational taxonomic units, or mOTUs), many of which are potentially new to science (18 mOTUs) and/or endemic to the TAR (9 mOTUs). Comparing the CCA species inventory of the TAR with the rest of Taiwan shows that the TAR represents a unique hotspot of CCA taxa in the waters of Taiwan. Our analyses show that variation in the CCA assemblages in the TAR is associated with geographic distance, sedimentation, and substrate type (for example, reef versus hermit crab shell), suggesting that dispersal limitation and contemporary environmental selection shape the CCA assemblages in the TAR. The data from this study can inform the monitoring of human impacts on the health of the TAR and contribute to our understanding of the ecological processes underlying algal reef development.
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Affiliation(s)
- Shing Hei Zhan
- Department of Zoology & Biodiversity Research Centre, University of British Columbia, BC, Canada
| | - Ling Chen
- Department of Life Science & Center for Ecology and Environment, Tunghai University, Taichung, 40704, Taiwan
| | - Chen-Pan Liao
- Department of Life Science & Center for Ecology and Environment, Tunghai University, Taichung, 40704, Taiwan.,Department of Biology, National Museum of Natural Science, Taichung, 404, Taiwan
| | - Wun-Ruei Chang
- Department of Life Science & Center for Ecology and Environment, Tunghai University, Taichung, 40704, Taiwan
| | - Cheng-Chin Li
- Department of Life Science & Center for Ecology and Environment, Tunghai University, Taichung, 40704, Taiwan
| | - Guang-You Tang
- Department of Life Science & Center for Ecology and Environment, Tunghai University, Taichung, 40704, Taiwan
| | - Ching-Yu Liou
- Endemic Species Research Institute, Jiji, Nantou, 552, Taiwan
| | - Wei-Lung Wang
- Department of Biology, National Changhua University of Education, Changhua, 500, Taiwan
| | - Shih-Wei Wang
- Department of Geology, National Museum of Natural Science, Taichung, 404, Taiwan
| | - Shao-Lun Liu
- Department of Life Science & Center for Ecology and Environment, Tunghai University, Taichung, 40704, Taiwan
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13
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Jeong SY, Diaz-Pulido G, Maneveldt GW, Gabrielson PW, Nelson WA, Won BY, Cho TO. Phymatolithopsis gen. nov. (Hapalidiales, Corallinophycidae, Rhodophyta) based on molecular and morpho-anatomical evidence. JOURNAL OF PHYCOLOGY 2022; 58:161-178. [PMID: 34862980 DOI: 10.1111/jpy.13227] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/12/2021] [Accepted: 11/02/2021] [Indexed: 06/13/2023]
Abstract
A multigene (psbA, rbcL, 18S rDNA) molecular phylogeny of the genus Phymatolithon showed a polyphyletic grouping of two monophyletic clades within the Hapalidiales. DNA sequence data integrated with morpho-anatomical comparisons of type material and of recently collected specimens were used to establish Phymatolithopsis gen. nov. with three species, P. prolixa comb. nov., the generitype, P. repanda comb. nov. and P. donghaensis sp. nov. Phymatolithopsis is sister to Mesophyllum and occurs in a clade distinct from Phymatolithon and boreal species currently assigned to Lithothamnion. Morpho-anatomically, Phymatolithopsis is comprised of species that are non-geniculate and encrusting, bear epithallial cells with rounded walls (not flared), subepithallial initials that are usually as short as or shorter than their immediate inward derivatives, conceptacle primordia from all stages forming superficially directly from subepithallial initials, mature carposporangial conceptacles with a discontinuous fusion cell, gonimoblast filaments that develop at the margins of the fusion cell around the periphery of the carposporangial conceptacle chambers, and multiporate tetra/bisporangial conceptacles. Phymatolithopsis can be distinguished from Phymatolithon by the origin of its conceptacle primordia, which are initiated superficially, directly from the layer of subepithallial initials below the epithallial cells and the distribution of gonimoblast filaments in carposporangial conceptacles, that are at the margins of the fusion cells.
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Affiliation(s)
- So Young Jeong
- Australian Rivers Institute-Coast & Estuaries, School of Environment and Science, Nathan Campus, Griffith University, 170 Kessels Road, Nathan, QLD, 4111, Australia
| | - Guillermo Diaz-Pulido
- Australian Rivers Institute-Coast & Estuaries, School of Environment and Science, Nathan Campus, Griffith University, 170 Kessels Road, Nathan, QLD, 4111, Australia
| | - Gavin W Maneveldt
- Department of Biodiversity and Conservation Biology, University of the Western Cape, P. Bag X17, Bellville, 7535, South Africa
| | - Paul W Gabrielson
- Biology Department and Herbarium, Coker Hall CB 3280, University of North Carolina at Chapel Hill, North Carolina, Chapel Hill, 27599-3280, USA
| | - Wendy A Nelson
- National Institute of Water and Atmospheric Research, Private Bag 14-901, Wellington, 6241, New Zealand
- School of Biological Sciences, University of Auckland, Private Bag 92-019, Auckland, 1142, New Zealand
| | - Boo Yeon Won
- Department of Life Science, Chosun University, 309 Pilmun-daero, Dong-gu, Gwangju, 61452, Korea
| | - Tae Oh Cho
- Department of Life Science, Chosun University, 309 Pilmun-daero, Dong-gu, Gwangju, 61452, Korea
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14
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Deep Learning Applied to SEM Images for Supporting Marine Coralline Algae Classification. DIVERSITY 2021. [DOI: 10.3390/d13120640] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/12/2022]
Abstract
The classification of coralline algae commonly relies on the morphology of cells and reproductive structures, along with thallus organization, observed through Scanning Electron Microscopy (SEM). Nevertheless, species identification based on morphology often leads to uncertainty, due to their general plasticity. Evolutionary and environmental studies featured coralline algae for their ecological significance in both recent and past Oceans and need to rely on robust taxonomy. Research efforts towards new putative diagnostic tools have recently been focused on cell wall ultrastructure. In this work, we explored a new classification tool for coralline algae, using fine-tuning pretrained Convolutional Neural Networks (CNNs) on SEM images paired to morphological categories, including cell wall ultrastructure. We considered four common Mediterranean species, classified at genus and at the species level (Lithothamnion corallioides, Mesophyllum philippii, Lithophyllum racemus, Lithophyllum pseudoracemus). Our model produced promising results in terms of image classification accuracy given the constraint of a limited dataset and was tested for the identification of two ambiguous samples referred to as L. cf. racemus. Overall, explanatory image analyses suggest a high diagnostic value of calcification patterns, which significantly contributed to class predictions. Thus, CNNs proved to be a valid support to the morphological approach to taxonomy in coralline algae.
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15
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Peña V, Harvey BP, Agostini S, Porzio L, Milazzo M, Horta P, Le Gall L, Hall-Spencer JM. Major loss of coralline algal diversity in response to ocean acidification. GLOBAL CHANGE BIOLOGY 2021; 27:4785-4798. [PMID: 34268846 DOI: 10.1111/gcb.15757] [Citation(s) in RCA: 11] [Impact Index Per Article: 2.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2021] [Revised: 06/17/2021] [Accepted: 06/17/2021] [Indexed: 06/13/2023]
Abstract
Calcified coralline algae are ecologically important in rocky habitats in the marine photic zone worldwide and there is growing concern that ocean acidification will severely impact them. Laboratory studies of these algae in simulated ocean acidification conditions have revealed wide variability in growth, photosynthesis and calcification responses, making it difficult to assess their future biodiversity, abundance and contribution to ecosystem function. Here, we apply molecular systematic tools to assess the impact of natural gradients in seawater carbonate chemistry on the biodiversity of coralline algae in the Mediterranean and the NW Pacific, link this to their evolutionary history and evaluate their potential future biodiversity and abundance. We found a decrease in the taxonomic diversity of coralline algae with increasing acidification with more than half of the species lost in high pCO2 conditions. Sporolithales is the oldest order (Lower Cretaceous) and diversified when ocean chemistry favoured low Mg calcite deposition; it is less diverse today and was the most sensitive to ocean acidification. Corallinales were also reduced in cover and diversity but several species survived at high pCO2 ; it is the most recent order of coralline algae and originated when ocean chemistry favoured aragonite and high Mg calcite deposition. The sharp decline in cover and thickness of coralline algal carbonate deposits at high pCO2 highlighted their lower fitness in response to ocean acidification. Reductions in CO2 emissions are needed to limit the risk of losing coralline algal diversity.
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Affiliation(s)
- Viviana Peña
- BioCost Research Group, Facultad de Ciencias, Centro de Investigaciones Científicas Avanzadas (CICA), Universidade da Coruña, A Coruña, Spain
- Institut de Systématique, Évolution, Biodiversité (ISYEB), Muséum national d'Histoire naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, Paris, France
| | - Ben P Harvey
- Shimoda Marine Research Center, University of Tsukuba, Shizuoka, Japan
| | - Sylvain Agostini
- Shimoda Marine Research Center, University of Tsukuba, Shizuoka, Japan
| | - Lucia Porzio
- Shimoda Marine Research Center, University of Tsukuba, Shizuoka, Japan
| | - Marco Milazzo
- Department of Earth and Marine Sciences (DiSTeM), University of Palermo, Palermo, Italy
| | - Paulo Horta
- Laboratory of Phycology, Department of Botany, Center for Biological Sciences, Federal University of Santa Catarina, Florianópolis, Santa Catarina, Brazil
| | - Line Le Gall
- Institut de Systématique, Évolution, Biodiversité (ISYEB), Muséum national d'Histoire naturelle, CNRS, Sorbonne Université, EPHE, Université des Antilles, Paris, France
| | - Jason M Hall-Spencer
- Shimoda Marine Research Center, University of Tsukuba, Shizuoka, Japan
- School of Biological and Marine Sciences, University of Plymouth, Plymouth, UK
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16
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Calderon MS, Bustamante DE, Gabrielson PW, Martone PT, Hind KR, Schipper SR, Mansilla A. Type specimen sequencing, multilocus analyses, and species delimitation methods recognize the cosmopolitan Corallina berteroi and establish the northern Japanese C. yendoi sp. nov. (Corallinaceae, Rhodophyta). JOURNAL OF PHYCOLOGY 2021; 57:1659-1672. [PMID: 34310713 DOI: 10.1111/jpy.13202] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Accepted: 07/13/2021] [Indexed: 06/13/2023]
Abstract
A partial rbcL sequence of the lectotype specimen of Corallina berteroi shows that it is the earliest available name for C. ferreyrae. Multilocus species delimitation analyses (ABGD, SPN, GMYC, bPTP, and BPP) using independent or concatenated COI, psbA, and rbcL sequences recognized one, two, or three species in this complex, but only with weak support for each species hypothesis. Conservatively, we recognize a single worldwide species in this complex of what appears to be multiple, evolving populations. Included in this species, besides C. ferreyrae, are C. caespitosa, the morphologically distinct C. melobesioides, and, based on a partial rbcL sequence of the holotype specimen, C. pinnatifolia. Corallina berteroi, not C. officinalis, is the cosmopolitan temperate species found thus far in the NE Atlantic, Mediterranean Sea, warm temperate NW Atlantic and NE Pacific, cold temperate SW Atlantic (Falkland Islands), cold and warm temperate SE Pacific, NW Pacific and southern Australia. Also proposed is C. yendoi sp. nov. from Hokkaido, Japan, which was recognized as distinct by 10 of the 13 species discrimination analyses, including the multilocus BPP.
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Affiliation(s)
- Martha S Calderon
- Laboratorio de Ecosistemas Marinos Antárticos y Sub-antárticos (LEMAS), Universidad de Magallanes, Punta Arenas, Chile
- Instituto de Ecología y Biodiversidad (IEB), Santiago, Chile
| | - Danilo E Bustamante
- Instituto de Investigación para el Desarrollo Sustentable de Ceja de Selva (INDES-CES), Universidad Nacional Toribio Rodríguez de Mendoza, Chachapoyas, Peru
- Department of Civil and Environmental Engineering (FICIAM), Universidad Nacional Toribio Rodríguez de Mendoza, Chachapoyas, Peru
| | - Paul W Gabrielson
- Biology Department and Herbarium, Coker Hall CB 3280, University of North Carolina, Chapel Hill, Chapel Hill, North Carolina, 27599-3280, USA
| | - Patrick T Martone
- Botany Department & Biodiversity Research Centre, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
| | - Katharine R Hind
- Department of Biology, University of Victoria, PO Box 1700 Station CSC, Victoria, BC, V8W 2Y2, Canada
| | - Soren R Schipper
- Botany Department & Biodiversity Research Centre, University of British Columbia, Vancouver, BC, V6T 1Z4, Canada
| | - Andrés Mansilla
- Laboratorio de Ecosistemas Marinos Antárticos y Sub-antárticos (LEMAS), Universidad de Magallanes, Punta Arenas, Chile
- Instituto de Ecología y Biodiversidad (IEB), Santiago, Chile
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17
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Jeong SY, Nelson WA, Sutherland JE, Peña V, Le Gall L, Diaz-Pulido G, Won BY, Cho TO. Corallinapetrales and Corallinapetraceae: A new order and family of coralline red algae including Corallinapetra gabrielii comb. nov. JOURNAL OF PHYCOLOGY 2021; 57:849-862. [PMID: 33305368 DOI: 10.1111/jpy.13115] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/13/2020] [Revised: 10/26/2020] [Accepted: 11/16/2020] [Indexed: 06/12/2023]
Abstract
The coralline algal genus Corallinapetra is currently monospecific and was established on the species Corallinapetra novaezelandiae, known from a single collection from north-eastern New Zealand. On the basis of multi-gene phylogenetic analyses, Corallinapetra has been resolved apart from all currently recognized families and orders within the Corallinophycidae. We analyzed DNA sequence data from the holotype of Lithothamnion gabrielii, which has been considered a heterotypic synonym of L. muelleri, and an unidentified sample collected from Stewart Island in New Zealand, using psbA, rbcL, and COI-5P genes. We also observed detailed morpho-anatomical characters with light and scanning electron microscopy. Our phylogenetic analyses showed that L. gabrielii and the sample from New Zealand belonged to the same clade as Corallinapetra, distinct from other families and orders in the Corallinophycidae. Members of this clade are distinguishable from other families and orders in the Corallinophycidae by possessing sporangia that are surrounded by remnant sterile filaments that are weakly calcified in mature multiporate sporangial conceptacles that produce zonately divided tetrasporangia. Therefore, we propose that Corallinapetra be placed in its own family, Corallinapetraceae and order, Corallinapetrales, and that L. gabrielii should be assigned to Corallinapetra, as C. gabrielii, to reflect their phylogenetic relationships. We also obtained a partial rbcL sequence data from the lectotype of L. muelleri, the generitype of Lithothamnion. Comparison of the L. muelleri type sequence with L. gabrielii unambiguously demonstrated that these two species are not conspecific, and confirm the placement of L. muelleri within the Hapalidiales.
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Affiliation(s)
- So Young Jeong
- Australian Rivers Institute-Coast & Estuaries and School of Environment and Science, Nathan Campus, Griffith University, Brisbane, QLD, 4111, Australia
- Department of Life Science, Chosun University, Gwangju, 61452, Korea
| | - Wendy A Nelson
- National Institute of Water and Atmospheric Research, Private Bag 14-901, Wellington, 6241, New Zealand
- School of Biological Sciences, University of Auckland, Private Bag 92-019, Auckland, 1142, New Zealand
| | - Judith E Sutherland
- National Institute of Water and Atmospheric Research, Private Bag 14-901, Wellington, 6241, New Zealand
| | - Viviana Peña
- BIOCOST Research Group, Departamento de Bioloxía, Facultade de Ciencias and Advanced Scientific Research Center (CICA), Universidade da Coruña, 15071 A, Coruña, Spain
| | - Line Le Gall
- Institut Systématique Evolution Biodiversité (ISYEB), Muséum National d'Histoire Naturelle, CNRS, Sorbonne Université, EPHE, 57 rue Cuvier, CP 39, 75005, Paris, France
| | - Guillermo Diaz-Pulido
- School of Environment and Science and Australian Rivers Institute-Coast & Estuaries, Nathan Campus, Griffith University, Brisbane, QLD, 4111, Australia
| | - Boo Yeon Won
- Department of Life Science, Chosun University, Gwangju, 61452, Korea
| | - Tae Oh Cho
- Department of Life Science, Chosun University, Gwangju, 61452, Korea
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18
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Puckree-Padua CA, Gabrielson PW, Hughey JR, Maneveldt GW. DNA Sequencing of Type Material Reveals Pneophyllum marlothii comb. nov. from South Africa and P. discoideum comb. nov. (Chamberlainoideae, Corallinales, Rhodophyta) from Argentina. JOURNAL OF PHYCOLOGY 2020; 56:1625-1641. [PMID: 32638378 DOI: 10.1111/jpy.13047] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/09/2020] [Accepted: 06/24/2020] [Indexed: 06/11/2023]
Abstract
A partial rbcL sequence from the type material of Spongites discoideus from southern Argentina showed that it was distinct from rbcL sequences of South African specimens to which that name had been applied based on morpho-anatomy. A partial rbcL sequence from an original syntype specimen, herein designated the lectotype, of Lithophyllum marlothii, type locality Camps Bay, Western Cape Province, South Africa, was identical to rbcL sequences of South African field-collected specimens assigned to S. discoideus. Based on phylogenetic analyses of rbcL and/or psbA sequences, both of these species belong in Pneophyllum and are transferred there as P. discoideum comb. nov. and P. marlothii comb. nov. The two species exhibit a distinct type of development where thick, secondary, monomerous disks are produced from thin, primary, dimerous crusts. Whether this type of development represents an example of convergent evolution or is characteristic of a clade of species within Pneophyllum remains to be resolved.
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Affiliation(s)
- Courtney A Puckree-Padua
- Department of Biodiversity and Conservation Biology, University of the Western Cape, P. Bag X17, Bellville, 7535, South Africa
| | - Paul W Gabrielson
- Biology Department and Herbarium, Coker Hall CB 3280, University of North Carolina at Chapel Hill, Chapel Hill, North Carolina, 27599-3280, USA
| | - Jeffery R Hughey
- Division of Mathematics, Science and Engineering, Hartnell College, Salinas, California, 93901, USA
| | - Gavin W Maneveldt
- Department of Biodiversity and Conservation Biology, University of the Western Cape, P. Bag X17, Bellville, 7535, South Africa
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19
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Rindi F, Pasella MM, Lee MFE, Verbruggen H. Phylogeography of the mediterranean green seaweed Halimeda tuna (Ulvophyceae, Chlorophyta). JOURNAL OF PHYCOLOGY 2020; 56:1109-1113. [PMID: 32315445 DOI: 10.1111/jpy.13006] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/30/2020] [Accepted: 04/03/2020] [Indexed: 06/11/2023]
Abstract
Populations of many Mediterranean marine species show a strong phylogeographic structure, but the knowledge available for native seaweeds is limited. We investigated the genetic diversity of the green alga Halimeda tuna based on two plastid markers (tufA gene and a newly developed amplicon spanning five ribosomal protein genes and intergenic spacers, the rpl2-rpl14 region). The tufA sequences showed that Mediterranean H. tuna represents a single, well-defined species. The rpl2-rpl14 results highlighted a genetic separation between western and eastern Mediterranean populations; specimens collected from widely scattered locations in the Adriatic/Ionian region shared a haplotype unique to this region, and formed a group separated from all western Mediterranean regions. Specimens from Sardinia also formed a unique haplotype. Within the western Mediterranean basin, a gradual shift in the frequency of haplotypes was apparent along a West-East gradient. Our results represent the first clear evidence of an East-West genetic cleavage in a native Mediterranean macroalga and offer an interesting perspective for further research into fine-scale seaweed population structure in the NW Mediterranean Sea.
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Affiliation(s)
- Fabio Rindi
- Dipartimento di Scienze della Vita e dell'Ambiente, Università Politecnica delle Marche, Via Brecce Bianche, Ancona, 60131, Italy
| | - Marisa M Pasella
- School of BioSciences, University of Melbourne, Victoria, 3010, Australia
| | - Ming-Fen E Lee
- School of BioSciences, University of Melbourne, Victoria, 3010, Australia
| | - Heroen Verbruggen
- School of BioSciences, University of Melbourne, Victoria, 3010, Australia
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20
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Díaz-Tapia P, Ly M, Verbruggen H. Extensive cryptic diversity in the widely distributed Polysiphonia scopulorum (Rhodomelaceae, Rhodophyta): Molecular species delimitation and morphometric analyses. Mol Phylogenet Evol 2020; 152:106909. [PMID: 32702527 DOI: 10.1016/j.ympev.2020.106909] [Citation(s) in RCA: 13] [Impact Index Per Article: 2.6] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/23/2020] [Revised: 06/30/2020] [Accepted: 07/15/2020] [Indexed: 10/23/2022]
Abstract
Our knowledge of seaweed diversity and biogeography still largely relies on information derived from morphological identifications, but the use of molecular tools is revealing that cryptic diversity is common among algae. Polysiphonia scopulorum is a turf-forming red alga widely reported in tropical and temperate coasts worldwide. The only study based on material collected from its Australian type locality and the Iberian Peninsula indicates that it is a species complex, but the extent of cryptic diversity across its geographical range is not known. To investigate the species diversity in P. scopulorum, the geographical distribution of species-level lineages and their morphological characterization, we collected 135 specimens from Australia, South Africa and southern Europe. Two gene datasets (cox1 and rbcL) were used to delimit species using three methods (GMYC, PTP, ABGD), leading to a consensus result that our collections of the P. scopulorum complex comprise 12 species. Five of these species were resolved in a highly supported clade, while the other seven species were related to other taxonomically accepted species or in unresolved parts of the tree. Morphometric and statistical analysis of a set of ten quantitative characters showed that there are no clear morphological correlates of species boundaries, demonstrating true cryptic diversity in the P. scopulorum complex. Distribution patterns of the 12 species were variable, ranging from species only known from a single site to species with a wide distribution spanning three continents. Our study indicates that a significant level of undiscovered cryptic diversity is likely to be found in algal turfs, a type of seaweed community formed by small entangled species.
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Affiliation(s)
- Pilar Díaz-Tapia
- School of BioSciences, University of Melbourne, Victoria 3010, Australia; Coastal Biology Research Group, Faculty of Sciences and Centre for Advanced Scientific Research (CICA), University of A Coruña, 15071 A Coruña, Spain; Instituto Español de Oceanografía (IEO), Centro Oceanográfico de A Coruña, Aptdo. 130, 15080 A Coruña, Spain.
| | - Monica Ly
- School of BioSciences, University of Melbourne, Victoria 3010, Australia.
| | - Heroen Verbruggen
- School of BioSciences, University of Melbourne, Victoria 3010, Australia.
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21
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Sporolithon franciscanum sp. nov. (Sporolithales, Rhodophyta), a New Rhodolith-Forming Species from Northeast Brazil. DIVERSITY 2020. [DOI: 10.3390/d12050199] [Citation(s) in RCA: 4] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
This paper describes Sporolithon franciscanum, a new rhodolith-forming species of non-geniculate coralline algae found at depths between 47–52 m near the São Francisco river mouth, the second largest and the most extensive drainage basin in Brazil, and also at the Abrolhos Bank, in the world´s largest rhodolith beds. DNA sequences from plastidial psbA and rbcL markers indicate that the species is unique compared to all other Sporolithon species that have thus far been sequenced. Since morpho-anatomical features of the new species are shared with some other Sporolithon species, its identification was only confirmed by DNA sequences.
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22
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The Minute Alga Schizocladia ischiensis (Schizocladiophyceae, Ochrophyta) Isolated by Germling Emergence from 24 m Depth off Rhodes (Greece). DIVERSITY 2020. [DOI: 10.3390/d12030102] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.4] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/11/2022]
Abstract
Substratum collected during diving surveys of sublittoral communities off the Greek island of Rhodes (Dodecanese, South-East Aegean) in late 2015 was incubated in the laboratory. Among the emerging macroalgal germlings, there was the second-ever record and isolate of the small benthic multicellular alga Schizocladia ischiensis of the poorly known monotypic Schizocladiophyceae, the sister group of the brown algae (Phaeophyceae). Its nuclear ribosomal small subunit, Rubisco spacer (rbcL, psaA, and psbC sequences (in total 5237 bp)) were similar to those of the only previous isolate of the species from Ischia, western Mediterranean. Our new strain formed branched upright thalli attached to the substratum by an amorphous substance secreted at the bottom of the basal cell. It is possible that S. ischiensis is a common member of the infralittoral and circalittoral communities in the Mediterranean and generally overlooked because of its minute size. Germling emergence appears to represent the method of choice to reveal benthic algae of this small size.
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High diversity of coralline algae in New Zealand revealed: Knowledge gaps and implications for future research. PLoS One 2019; 14:e0225645. [PMID: 31790447 PMCID: PMC6886753 DOI: 10.1371/journal.pone.0225645] [Citation(s) in RCA: 12] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/19/2019] [Accepted: 11/08/2019] [Indexed: 11/19/2022] Open
Abstract
Coralline algae (Corallinophycideae) are calcifying red algae that are foundation species in euphotic marine habitats globally. In recent years, corallines have received increasing attention due to their vulnerability to global climate change, in particular ocean acidification and warming, and because of the range of ecological functions that coralline algae provide, including provisioning habitat, influencing settlement of invertebrate and other algal species, and stabilising reef structures. Many of the ecological roles corallines perform, as well as their responses to stressors, have been demonstrated to be species-specific. In order to understand the roles and responses of coralline algae, it is essential to be able to reliably distinguish individual species, which are frequently morphologically cryptic. The aim of this study was to document the diversity and distribution of coralline algae in the New Zealand region using DNA based phylogenetic methods, and examine this diversity in a broader global context, discussing the implications and direction for future coralline algal research. Using three independent species delimitation methods, a total of 122 species of coralline algae were identified across the New Zealand region with high diversity found both regionally and also when sampling at small local spatial scales. While high diversity identified using molecular methods mirrors recent global discoveries, what distinguishes the results reported here is the large number of taxa (115) that do not resolve with type material from any genus and/or species. The ability to consistently and accurately distinguish species, and the application of authoritative names, are essential to ensure reproducible science in all areas of research into ecologically important yet vulnerable coralline algae taxa.
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De Jode A, David R, Haguenauer A, Cahill AE, Erga Z, Guillemain D, Sartoretto S, Rocher C, Selva M, Le Gall L, Féral JP, Chenuil A. From seascape ecology to population genomics and back. Spatial and ecological differentiation among cryptic species of the red algae Lithophyllum stictiforme/L. cabiochiae, main bioconstructors of coralligenous habitats. Mol Phylogenet Evol 2019; 137:104-113. [DOI: 10.1016/j.ympev.2019.04.005] [Citation(s) in RCA: 19] [Impact Index Per Article: 3.2] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/21/2018] [Revised: 03/28/2019] [Accepted: 04/01/2019] [Indexed: 01/25/2023]
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