Root-induced soil deformation influences Fe, S and P: rhizosphere chemistry investigated using synchrotron XRF and XANES

Root Growth and Development in "Real Life": Advances and Challenges in Studying Root-Environment Interactions

Plant roots play myriad roles that include foraging for resources in complex soil environments. Within this highly dynamic soil environment roots must sense, interact with, and acclimate to factors such as water availability, microbiota, and heterogeneous distribution of nutrients. To aid their acclimation, roots alter their growth and development to optimize their architecture and actively regulate the physical, chemical, and biological properties of their rhizosphere. Understanding the complex interactions between roots and rhizosphere is critical for designing future crops with improved root traits better adapted to diverse and challenging soil conditions. However, studying roots and their interactions with soil under real-world conditions presents significant challenges. Addressing these challenges demands developing realistic laboratory-based model systems and innovative field-based root imaging techniques. Our review surveys the current knowledge and recent advances in understanding root-environment interactions while proposing future solutions to study roots under more "real-life" soil conditions.

Linking micro-X-ray fluorescence spectroscopy and X-ray computed tomography with model simulation explains differences in nutrient gradients around roots of different types and ages

Plant roots create chemical gradients within the rhizosphere, but little information exists on the effect of root properties on the distribution of chemical gradients. The research aim was to analyse and model the effects of root type and age, radial root geometry and root hairs on nutrient gradients in the rhizosphere. Using micro-X-ray fluorescence spectroscopy (μ-XRF) combined with X-ray computed tomography (X-ray CT), we analysed nutrient gradients around root segments with different diameters and ages of two Zea mays genotypes (wild-type and root hair defective mutant) growing in two substrates (loam and sand). Gradients of key nutrients were compared with gradients obtained by a process-based, radially symmetric 1D rhizosphere model. Results show that root hairs matter for nutrient uptake during supply limitation (phosphorus (P)), but not when it is limited by uptake kinetics (calcium (Ca), sulphur (S)). Higher Ca and S accumulation was observed at the surface of older and thicker root segments than at younger and thinner root segments. Micro-XRF proved suitable for the detection of nutrient gradients of Ca and S, but not of P. While continuum modelling was well suited to explain observed nutrient gradients, it was less effective in representing pore-related phenomena, such as precipitation reactions, which calls for new homogenization approaches.

High-Altitude Open-Pit Coal Mining has Changed the Sulfur Cycle and Ecological Network of Plant Rhizosphere Microorganisms

Ecological restoration of mining sites has a considerable effect on microbial community dynamics; however, its impact on sulfur cycling is unclear. This study explored the changes in functional genes related to sulfur cycling and microbial diversity during different stages of succession following the ecological restoration of a mining site in a cold arid area. A total of three succession stages were selected-natural, secondary, and artificial. The expression of sulfur cycle-related genes and associated microbial drivers was investigated using metagenomics and network analysis. The dominant bacteria in the secondary succession were found to be r-strategy-adopting Proteobacteria and Cyanobacteria. Natural succession primarily comprised Aspergillus and Thermus, whereas artificial succession comprised Proteobacteria, Chlorophyta, and Actinobacteria. Mining disturbances were determined to significantly reduce the abundance of sulfur-cycling archaea. Secondary succession was primarily influenced by soil total phosphorus in the sulfur-cycle gene network. The key bacteria and archaea involved in the sulfur cycle were found to be Bradyrhizobium and Nitrosopumilus, respectively. The abundance of Streptomyces was significantly higher in natural succession than in artificial or secondary succession. Burkholderia, which has biological control and bioremediation effects, was abundant during artificial succession. These results provide a theoretical basis for restoring the sulfur cycle and promoting a positive succession of ecosystems in mining areas.

Plants colonization accelerates galena oxidation, mineralogical transformation, and microbial community reshaping under the soil phytoremediation processes

The ongoing weathering of metal sulfides has substantially posed threats to the eco-systems. For remediating metal sulfides-contaminated soils, phytostabilization is a promising nature-based technique that immobilizing heavy metals (HMs) that dissolved from metal sulfides in the rhizosphere, preventing their leaching and migrating into soil and groundwater. However, the underlying mechanism regarding the mineral-root interaction involving primary metal sulfides such as galena (PbS) during the remediation processes has yet been well studied. This study aims to investigate the geochemical alterations, mineralogical transformations, and microbial community reshaping of galena-added soils during plants colonization using two representative plants, ryegrass (Lolium perenne L.) and alfalfa (Medicago sativa.). After 11 weeks of plants colonization, the morphology of galena surface was altered, as massive erosion pits (ca. 200 nm) were visualized by SEM (Scanning Electron Microscope). The microspectroscopic analyses indicated that the PbS may have transformed to PbCO3 and PbSO4 during the plants colonization. Additionally, the chemical sequential extraction revealed that the plants colonization could promote the soluble Pb to be associated with carbonates and amorphous Fe/Al (oxyhydr)oxides, thus limiting their bioavailability and mobility. Moreover, the key driving factors of microbial community alteration have shifted from pH and bioavailability Pb to cation exchange capacity (CEC) during the plants colonization process. These findings have uncovered the (bio)geochemical behaviors of PbS in soils during the phytostabilization processes, which may develop an integrated mechanism of mineralogical and geochemical stabilization of HMs for non-pollution outcomes.

Probing Mineral-Organic Interfaces in Soils and Sediments Using Optical Photothermal Infrared Microscopy

Interactions among microbes, minerals, and organic matter are key controls on carbon, nutrient, and contaminant dynamics in soils and sediments. However, probing these interactions at relevant scales and through time remains an analytical challenge due to both their complex nature and the need for tools permitting nondestructive and real-time analysis at sufficient spatial resolution. Here, we demonstrate the ability and provide analytical recommendations for the submicron-scale characterization of complex mineral-organic microstructures using optical photothermal infrared (O-PTIR) microscopy. Compared to conventional infrared techniques, O-PTIR spectra collected at submicron resolution of environmentally relevant mineral and organic reference compounds demonstrated similar spectral quality and sensitivity. O-PTIR detection sensitivity was greatest for highly crystalline minerals and potentially for low molecular weight organic compounds. Due to photothermal effects, O-PTIR was more sensitive toward organics than minerals compared to conventional IR approaches, even when organics were mineral-bound. Moreover, O-PTIR resolved mineral-bound and unbound organics in a complex mixture at submicron (<500 nm) resolution. Finally, we provide best practices for artifact-free analysis of organic and mineral samples by determining the appropriate laser power using damage thresholds. Our results highlight the potential of O-PTIR microscopy for nondestructive and time-resolved analysis of dynamic microbe-mineral-organic matter interactions in soils and sediments.

Differential Exudation Creates Biogeochemically Distinct Microenvironments during Rhizosphere Evolution

Plant roots and associated microbes release a diverse range of functionally distinct exudates into the surrounding rhizosphere with direct impacts on soil carbon storage, nutrient availability, and contaminant dynamics. Yet mechanistic linkages between root exudation and emergent biogeochemical processes remain challenging to measure nondestructively, in real soil, over time. Here we used a novel combination of in situ microsensors with high-resolution mass spectrometry to measure, nondestructively, changing exudation and associated biogeochemical dynamics along single growing plant roots (Avena sativa). We found that metabolite and dissolved organic carbon (DOC) concentrations as well as microbial growth, redox potential (EH), and pH dynamics vary significantly among bulk soil, root tip, and more mature root zones. Surprisingly, the significant spike of rhizosphere DOC upon root tip emergence did not significantly correlate with any biogeochemical parameters. However, the presence of sugars significantly correlated with declines in EH following the arrival of the root tip, likely due to enhanced microbial oxygen demand. Similarly, the presence of organic acids significantly correlated to declines in pH upon root tip emergence. Overall, our in situ measurements highlight how different exudates released along growing roots create functionally distinct soil microenvironments that evolve over time.

Emerging sensing, imaging, and computational technologies to scale nano-to macroscale rhizosphere dynamics - Review and research perspectives

The soil region influenced by plant roots, i.e., the rhizosphere, is one of the most complex biological habitats on Earth and significantly impacts global carbon flow and transformation. Understanding the structure and function of the rhizosphere is critically important for maintaining sustainable plant ecosystem services, designing engineered ecosystems for long-term soil carbon storage, and mitigating the effects of climate change. However, studying the biological and ecological processes and interactions in the rhizosphere requires advanced integrated technologies capable of decoding such a complex system at different scales. Here, we review how emerging approaches in sensing, imaging, and computational modeling can advance our understanding of the complex rhizosphere system. Particularly, we provide our perspectives and discuss future directions in developing in situ rhizosphere sensing technologies that could potentially correlate local-scale interactions to ecosystem scale impacts. We first review integrated multimodal imaging techniques for tracking inorganic elements and organic carbon flow at nano- to microscale in the rhizosphere, followed by a discussion on the use of synthetic soil and plant habitats that bridge laboratory-to-field studies on the rhizosphere processes. We then describe applications of genetically encoded biosensors in monitoring nutrient and chemical exchanges in the rhizosphere, and the novel nanotechnology-mediated delivery approaches for introducing biosensors into the root tissues. Next, we review the recent progress and express our vision on field-deployable sensing technologies such as planar optodes for quantifying the distribution of chemical and analyte gradients in the rhizosphere under field conditions. Moreover, we provide perspectives on the challenges of linking complex rhizosphere interactions to ecosystem sensing for detecting biological traits across scales, which arguably requires using the best-available model predictions including the model-experiment and image-based modeling approaches. Experimental platforms relevant to field conditions like SMART (Sensors at Mesoscales with Advanced Remote Telemetry) soils testbed, coupled with ecosystem sensing and predictive models, can be effective tools to explore coupled ecosystem behavior and responses to environmental perturbations. Finally, we envision that with the advent of novel high-resolution imaging capabilities at nano- to macroscale, and remote biosensing technologies, combined with advanced computational models, future studies will lead to detection and upscaling of rhizosphere processes toward ecosystem and global predictions.

Ferrihydrite-mediated methanotrophic nitrogen fixation in paddy soil under hypoxia

Biological nitrogen fixation (BNF) by methanotrophic bacteria has been shown to play an important role in maintaining fertility. However, this process is still limited to aerobic methane oxidation with sufficient oxygen. It has remained unknown whether and how methanotrophic BNF proceeds in hypoxic environments. Herein, we incubated paddy soils with a ferrihydrite-containing mineral salt medium to enrich methanotrophic bacteria in the presence of methane (20%, v/v) under oxygen constraints (0.27%, v/v). The resulting microcosms showed that ferrihydrite-dependent aerobic methane oxidation significantly contributed (81%) to total BNF, increasing the 15N fixation rate by 13-fold from 0.02 to 0.28 μmol 15N2 (g dry weight soil) -1 d-1. BNF was reduced by 97% when ferrihydrite was omitted, demonstrating the involvement of ferrihydrite in methanotrophic BNF. DNA stable-isotope probing indicated that Methylocystis, Methylophilaceae, and Methylomicrobium were the dominant methanotrophs/methylotrophs that assimilated labeled isotopes (13C or 15N) into biomass. Metagenomic binning combined with electrochemical analysis suggested that Methylocystis and Methylophilaceae had the potential to perform methane-induced BNF and likely utilized riboflavin and c-type cytochromes as electron carriers for ferrihydrite reduction. It was concluded that ferrihydrite mediated methanotrophic BNF by methanotrophs/methylotrophs solely or in conjunction with iron-reducing bacteria. Overall, this study revealed a previously overlooked yet pronounced coupling of iron-dependent aerobic methane oxidation to BNF and improves our understanding of methanotrophic BNF in hypoxic zones.

Research progress of nano-scale secondary ion mass spectrometry (NanoSIMS) in soil science: Evolution, applications, and challenges

Nano-scale secondary ion mass spectrometry (NanoSIMS) has emerged as a powerful analytical tool for investigating various aspects of soils. In recent decades, the widespread adoption of advanced instrumentation and methods has contributed significantly to our understanding of organic-mineral assemblages. However, few literature reviews have comprehensively summarized NanoSIMS and its evolution, applications, limitations, and integration with other analytical techniques. In this review, we addressed this gap by comprehensively overviewing the development of NanoSIMS as an analytical tool in soils. This review covers studies on soil organic matter (SOM) cycling, soil-root interactions, and the behavior of metals, discussing the capability and limitations related to the distribution, composition, and interactions of various soil components that occur at mineral-organic interfaces. Furthermore, we examine recent advancements in high-resolution imaging and mass spectrometry technologies and their impact on the utilization of NanoSIMS in soils, along with potential new applications such as utilizing multiple ion beams and integrating them with other analytical techniques. The review emphasizes the importance of employing advanced techniques and methods to explore micro-interfaces and provide in situ descriptions of organic-mineral assemblages in future research. The ongoing development and refinement of NanoSIMS may yield new insights and breakthroughs in soil science, deepening our understanding of the intricate relationships between soil components and the processes that govern soil health and fertility.

Plant species identity and plant-induced changes in soil physicochemistry-but not plant phylogeny or functional traits - shape the assembly of the root-associated soil microbiome

The root-associated soil microbiome contributes immensely to support plant health and performance against abiotic and biotic stressors. Understanding the processes that shape microbial assembly in root-associated soils is of interest in microbial ecology and plant health research. In this study, 37 plant species were grown in the same soil mixture for 10 months, whereupon the root-associated soil microbiome was assessed using amplicon sequencing. From this, the contribution of direct and indirect plant effects on microbial assembly was assessed. Plant species and plant-induced changes in soil physicochemistry were the most significant factors that accounted for bacterial and fungal community variation. Considering that all plants were grown in the same starting soil mixture, our results suggest that plants, in part, shape the assembly of their root-associated soil microbiome via their effects on soil physicochemistry. With the increase in phylogenetic ranking from plant species to class, we observed declines in the degree of community variation attributed to phylogenetic origin. That is, plant-microbe associations were unique to each plant species, but the phylogenetic associations between plant species were not important. We observed a large degree of residual variation (> 65%) not accounted for by any plant-related factors, which may be attributed to random community assembly.

The soil pore structure encountered by roots affects plant-derived carbon inputs and fate

Plant roots are the main supplier of carbon (C) to the soil, the largest terrestrial C reservoir. Soil pore structure drives root growth, yet how it affects belowground C inputs remains a critical knowledge gap. By combining X-ray computed tomography with 14 C plant labelling, we identified root-soil contact as a previously unrecognised influence on belowground plant C allocations and on the fate of plant-derived C in the soil. Greater contact with the surrounding soil, when the growing root encounters a pore structure dominated by small (< 40 μm Ø) pores, results in strong rhizodeposition but in areas of high microbial activity. The root system of Rudbeckia hirta revealed high plasticity and thus maintained high root-soil contact. This led to greater C inputs across a wide range of soil pore structures. The root-soil contact Panicum virgatum, a promising bioenergy feedstock crop, was sensitive to the encountered structure. Pore structure built by a polyculture, for example, restored prairie, can be particularly effective in promoting lateral root growth and thus root-soil contact and associated C benefits. The findings suggest that the interaction of pore structure with roots is an important, previously unrecognised, stimulus of soil C gains.

Exploring the cellular surface polysaccharide and root nodule symbiosis characteristics of the rpoN mutants of Bradyrhizobium sp. DOA9 using synchrotron-based Fourier transform infrared microspectroscopy in conjunction with X-ray absorption spectroscopy

The functional significance of rpoN genes that encode two sigma factors in the Bradyrhizobium sp. strain DOA9 has been reported to affect colony formation, root nodulation characteristics, and symbiotic interactions with Aeschynomene americana. rpoN mutant strains are defective in cellular surface polysaccharide (CSP) production compared with the wild-type (WT) strain, and they accordingly exhibit smaller colonies and diminished symbiotic effectiveness. To gain deeper insights into the changes in CSP composition and the nodules of rpoN mutants, we employed synchrotron-based Fourier transform infrared (SR-FTIR) microspectroscopy and X-ray absorption spectroscopy. FTIR analysis of the CSP revealed the absence of specific components in the rpoN mutants, including lipids, carboxylic groups, polysaccharide-pyranose rings, and β-galactopyranosyl residues. Nodules formed by DOA9WT exhibited a uniform distribution of lipids, proteins, and carbohydrates; mutant strains, particularly DOA9∆rpoNp:ΩrpoNc, exhibited decreased distribution uniformity and a lower concentration of C=O groups. Furthermore, Fe K-edge X-ray absorption near-edge structure and extended X-ray absorption fine structure analyses revealed deficiencies in the nitrogenase enzyme in the nodules of DOA9∆rpoNc and DOA9∆rpoNp:ΩrpoNc mutants; nodules from DOA9WT and DOA9∆rpoNp exhibited both leghemoglobin and the nitrogenase enzyme. IMPORTANCE This work provides valuable insights into how two rpoN genes affect the composition of cellular surface polysaccharides (CSPs) in Bradyrhizobium sp., which subsequently dictates root nodule chemical characteristics and nitrogenase production. We used advanced synchrotron methods, including synchrotron-based Fourier transform infrared (SR-FTIR) microspectroscopy and X-ray absorption spectroscopy (XAS), for the first time in this field to analyze CSP components and reveal the biochemical changes occurring within nodules. These cutting-edge techniques confer significant advantages by providing detailed molecular information, enabling the identification of specific functional groups, chemical bonds, and biomolecule changes. This research not only contributes to our understanding of plant-microbe interactions but also establishes a foundation for future investigations and potential applications in this field. The combined use of the synchrotron-based FTIR and XAS techniques represents a significant advancement in facilitating a comprehensive exploration of bacterial CSPs and their implications in plant-microbe interactions.

Significant difference in the efficacies of silicon application regimes on cadmium species and environmental risks in rice rhizosphere

Silicon (Si) is commonly applied as base-fertilizer or foliar-topdressing to palliate the uptake-translocation-accumulation of cadmium (Cd) in rice through Si-Cd antagonism. However, little is known about the fate of Cd in rice rhizosphere soil and its eco-environmental effects under different Si treatments. Here, systematic works had been carried out to elucidate the Cd species, soil properties, and environmental risks in rice rhizosphere driven by different Si soil-fertilization regimes including CK (without Si-addition), TSi (added before transplanting stage), JSi (added at jointing stage), and TJSi (split into two equal parts, added half before transplanting and another half at jointing stage). Results showed that TJSi outperformed the rest of fertilization regimes. The solid-phase-Cd concentrations treated with TSi, TJSi and JSi were increased by 4.18%, 5.73% and 3.41%, respectively, when compared to CK. The labile Cd (F1+F2) proportion of TJSi was reduced by 16.30%, 9.30% and 6.78%, respectively, when compared to CK, TSi, and JSi. Simultaneously, the liquid-phase-Cd concentration was appreciably suppressed by TJSi throughout the rice lifecycle, while TSi mainly abated Cd dissociation during the vegetative period, and JSi attenuated it during the grain-filling stage. The mobility factor of Cd treated with TJSi was the lowest, which was significantly lower than that of TSi (9.30%) and JSi (6.78%), respectively. Similarly, the oral exposure risk of TJSi was reduced by 4.43% and 32.53%; and the food-chain exposure risk of TJSi was decreased by 13.03% and 42.78%. Additionally, TJSi was the most effective in promoting enzyme activities and nutrient content in rhizosphere soil. Overall, TJSi is more positive and sustainable than TSi and JSi in reconstructing Cd-contaminated rhizosphere environments and abating the environmental risks of Cd. Agronomic practices in Cd-contaminated paddy soils can be informed by applying Si-fertilizer separately before transplanting and at jointing stage to achieve soil welfare and food security.

Mechanisms of S cooperating with Fe and Mn to regulate the conversion of Cd and Cu during soil redox process revealed by LDHs-DGT technology

The activity changes of Cd and Cu in paddy field were strongly influenced by the transformation of S, Fe and Mn species. However, in the process of soil redox, how S cooperates with Fe/Mn to regulate the law and mechanism of Cd and Cu speciation transformation still needs to be studied. In this study, we used DGT technology based on layer double hydroxides (LDHs) combined with pore water sampling to investigate soil redox changes, rice growth, and the effects of different forms of sulfur (S⁰, SO₄^2-) on soil Cd and Cu activities. The results showed that the concentrations of C_DGT-Cd and Cu in the soil decreased rapidly in the anaerobic stage, but increased slowly in the oxidative stage. Multiple regression analysis showed that the changes of Cu and Cd concentrations mainly depended on the changes of Fe/Mn morphology. Sulfur treatment promoted the dissolution of Fe/Mn oxides in the short term (<48 h), and the activities of C_DGT-Fe, Mn, and Cd increased simultaneously, but C_DGT-Cu was not affected. However, after long-term anaerobic conditions (>10 d), sulfur addition reduced the activities of C_DGT-Cd and Cu, and decreased the uptake of Cd and Cu by rice. During sulfate reduction, the sulfur addition treatment group resulted in a 24.5-50.2 % decrease in C_DGT-Fe, indicating that sulfur addition may delay the release of Cd and Cu after rice planting by promoting the formation of FeS/FeS₂. In addition, in the anaerobic stage, Cu formed sulfide before Cd and was fixed, and the higher thermodynamic stability of CuS would promote the dissolution of CdS in the oxidation stage. Overall, soil flooding with sulfur to enhance the generation of metal sulfides and secondary iron ores provides an opportunity to use sulfur as an environmentally friendly modifier to coordinate Fe, Mn to improve heavy metal-contaminated soils.

Soft X-ray Fluorescence and Near-Edge Absorption Microscopy for Investigating Metabolic Features in Biological Systems: A Review

Scanning transmission X-ray microscopy (STXM) provides the imaging of biological specimens allowing the parallel collection of localized spectroscopic information by X-ray fluorescence (XRF) and/or X-ray Absorption Near Edge Spectroscopy (XANES). The complex metabolic mechanisms which can take place in biological systems can be explored by these techniques by tracing even small quantities of the chemical elements involved in the metabolic pathways. Here, we present a review of the most recent publications in the synchrotrons' scenario where soft X-ray spectro-microscopy has been employed in life science as well as in environmental research.

Correlative Imaging of the Rhizosphere─A Multimethod Workflow for Targeted Mapping of Chemical Gradients

Examining in situ processes in the soil rhizosphere requires spatial information on physical and chemical properties under undisturbed conditions. We developed a correlative imaging workflow for targeted sampling of roots in their three-dimensional (3D) context and assessed the imprint of roots on chemical properties of the root-soil contact zone at micrometer to millimeter scale. Maize (Zea mays) was grown in 15N-labeled soil columns and pulse-labeled with 13CO2 to visualize the spatial distribution of carbon inputs and nitrogen uptake together with the redistribution of other elements. Soil columns were scanned by X-ray computed tomography (X-ray CT) at low resolution (45 μm) to enable image-guided subsampling of specific root segments. Resin-embedded subsamples were then analyzed by X-ray CT at high resolution (10 μm) for their 3D structure and chemical gradients around roots using micro-X-ray fluorescence spectroscopy (μXRF), nanoscale secondary ion mass spectrometry (NanoSIMS), and laser-ablation isotope ratio mass spectrometry (LA-IRMS). Concentration gradients, particularly of calcium and sulfur, with different spatial extents could be identified by μXRF. NanoSIMS and LA-IRMS detected the release of 13C into soil up to a distance of 100 μm from the root surface, whereas 15N accumulated preferentially in the root cells. We conclude that combining targeted sampling of the soil-root system and correlative microscopy opens new avenues for unraveling rhizosphere processes in situ.

Effects of Soil Water Shortage on Seedling Shoot and Root Growth of Saragolle Lucana Tetraploid Wheat (Triticum durum Desf.) Landrace

Ancient wheats may be a source of traits that are useful for the tolerance of climate change foreseen conditions of raising temperatures and low water availability. Previous research has shown a fine root system and a high mass of rhizosheath per unit root mass in the italian durum wheat (Triticum durum Desf) landrace Saragolle Lucana, and this may be relevant for successfully facing adverse conditions during seedling establishment. We investigated the effect of soil water shortage in Saragolle seedlings on root architecture, rhizosheath formation and biomass allocation. Pot experiments were conducted by comparing two levels of soil available water content (AWC): WW (100% of AWC) and DS (50% of AWC). Phenology was delayed by eight days in DS and above and belowground traits were measured at Zadoks 1.3 for each treatment. Biometric data collected at the same phenological stage show that DS plants did not reach the levels of biomass, surface area and space occupation of WW even after attaining the same developmental stage. Namely, plant dimensions were lower at low soil water availability, with the exception of rhizosheath production: DS yielded a 50% increase in rhizosheath mass and 32% increase in rhizosheath mass per unit root mass. The proportion of plant mass reduction in DS was 29.7% for aboveground parts and 34.7% for roots, while reductions in leaf and root surface areas exceeded 43%. The root/shoot mass and area ratios were not significantly different between treatments, and a higher impact on aboveground than on belowground traits at reduced available water was shown only by a lower ratio of shoot height to root depth in DS than in WW. Increases in rhizosheath in absolute and relative terms, which were observed in our experiment in spite of smaller root systems in the ancient durum wheat variety Saragolle lucana at DS, may provide an interesting trait for plant performance in conditions of low soil water availability both for water-related issue and for other effects on plant nutrition and relations with the rhizosphere.

Characteristics of soil carbon emissions and bacterial community composition in peatlands at different stages of vegetation succession

Microorganisms are important components of soil ecosystems and play an important role in material cycles. Northern peatlands are important ecosystems in middle-high latitude regions. In peatlands, different vegetation successions occur with changes in groundwater levels. The overall carbon emission of peat bogs is related to the carbon stability of the surrounding environment. Unraveling the assembly and distribution of bacterial communities at different succession stages in peatland is essential to understanding the soil nutrient cycle. In this study, we investigated the characteristics of soil carbon emissions and the composition of subsurface microorganisms under six different succession stages. The highest carbon emission was observed in mossy peatlands, and their soil enzyme activity was closely related to the aboveground vegetation cover type. The succession pattern of ground vegetation was the main driver of soil microorganisms. The abundance of the dominant Proteobacteria decreased with increasing soil depth, while the opposite trend was observed for Chloroflexi. Furthermore, the community structure of microorganisms became progressively simpler and looser as soil water content decreased. The bacterial alpha diversity was driven by soil dissolved organic carbon and Fe, and the beta diversity was driven mainly by soil water content. The bacteria presented a random distribution in a nutrient-rich soil environment and shifted to deterministic distribution with decreasing water and nutrient contents. The balance between taxonomic diversity and dispersal limitation mediates species coexistence in the soil microbiome. This study provides new insights into the soil environment at different stages of succession in peatlands.

Struvite-based composites for slow-release fertilization: a case study in sand

Struvite (St) recovered from wastewaters is a sustainable option for phosphorus (P) recovery and fertilization, whose solubility is low in water and high in environments characterized by a low pH, such as acidic soils. To broaden the use of struvite in the field, its application as granules is recommended, and thus the way of application should be optimized to control the solubility. In this study struvite slow-release fertilizers were designed by dispersing St particles (25, 50, and 75 wt%) in a biodegradable and hydrophilic matrix of thermoplastic starch (TPS). It was shown that, in citric acid solution (pH = 2), TPS promoted a steadier P-release from St compared to the pure St pattern. In a pH neutral sand, P-diffusion from St-TPS fertilizers was slower than from the positive control of triple superphosphate (TSP). Nevertheless, St-TPS featured comparable maize growth (i.e. plant height, leaf area, and biomass) and similar available P as TSP in sand after 42 days of cultivation. These results indicated that St-TPS slow P release could provide enough P for maize in sand, achieving a desirable agronomic efficiency while also reducing P runoff losses in highly permeable soils.

Rhizosphere Effects along an Altitudinal Gradient of the Changbai Mountain, China

Rhizosphere effects (REs) play important roles in regulating carbon (C) and nutrient cycling in terrestrial ecosystems. However, little is known about the REs of mature trees in the field, especially at the ecosystem scale. This study aimed to explore the variation and patterns of REs in natural ecosystems. Here, combining soil monoliths with an adhering soil (shaking fine roots) method was adopted to sample paired rhizosphere soil and bulk soil along an altitudinal gradient. Based on the relative REs and the percentage of rhizosphere soil mass, the REs on soil C and net nitrogen mineralization rates (Cmin and net Nmin) at the ecosystem scale were estimated. Our results showed that the REs on soil processes, soil microbial biomass C and extracellular enzyme activities (β-glucosidase and N-acetyl-glucosaminidase activities), and soil chemical properties (total C, total N, inorganic N, extractable P, K, Ca, Mg, Fe, and Mn) were significantly positive across altitudinal sites, while soil pH was significantly negative. Although the relative REs on investigated variables varied significantly among altitudes, the relative REs did not show a clear trend with the increased altitudes. Across altitudes, the mean magnitude of ecosystem-level REs on Cmin and net Nmin were 19% (ranging from 4% to 48%) and 16% (ranging from 3% to 34%), respectively. Furthermore, the magnitude of ecosystem-level rhizosphere effects increased linearly with the increased altitudes. The altitudinal patterns of ecosystem-level RE mainly depend on the percentage of rhizosphere soil mass. In conclusion, our results provided a set of new evidence for the REs, and highlighted the need to incorporate REs into land C and N models.

Building soil sustainability from root-soil interface traits

Great potential exists to harness plant traits at the root-soil interface, mainly rhizodeposition and root hairs, to 'build' soils with better structure that can trap more carbon and resources, resist climate stresses, and promote a healthy microbiome. These traits appear to have been preserved in modern crop varieties, but scope exists to improve them further because they vary considerably between genotypes and respond to environmental conditions. From emerging evidence, rhizodeposition can act as a disperser, aggregator, and/or hydrogel in soil, and root hairs expand rhizosheath size. Future research should explore impacts of selecting these traits on plants and soils concurrently, expanding from model plants to commercial genotypes, and observing whether impacts currently limited to glasshouse studies occur in the field.

Trace Impurities Identified as Forensic Signatures in CMX-5 Fuel Pellets Using X-ray Spectroscopic Techniques

Small-particle analysis is a highly promising emerging forensic tool for analysis of interdicted special nuclear materials. Integration of microstructural, morphological, compositional, and molecular impurity signatures could provide significant advancements in forensic capabilities. We have applied rapid, high-sensitivity, hard X-ray synchrotron chemical imaging to analyze impurity signatures in two differently fabricated fuel pellets from the 5th Collaborative Materials Exercise (CMX5) of the IAEA Nuclear Forensics International Working Group. The spatial distributions, chemical compositions, and morphological and molecular characteristics of impurities were evaluated using X-ray absorption near-edge structure (XANES) and X-ray fluorescence chemical imaging to discover principal impurities, their granularity, particle sizes, modes of occurrence (distinct grains vs incorporation in the UO₂ lattice), and sources and mechanisms of incorporation. Differences in UO_2+x stoichiometry were detected at the microscale in nominally identical UO₂ ceramics (CMX5-A and CMX5-B), implying the presence of multiple UO₂ host phases with characteristic microstructures and feedstock compositions. Al, Fe, Ni, W, and Zr impurities and integrated impurity signature analysis identified distinctly different pellet synthesis and processing methods. For example, two different Al, W, and Zr populations in the CMX5-B sample indicated a more complex processing history than the CMX5-A sample. K-edge XANES measurements reveal both metallic and oxide forms of Fe and Ni but with different proportions between each sample. Altogether, these observations suggest multiple sources of impurities, including fabrication (e.g., force-sieving) and feedstock (mineral oxides). This study demonstrates the potential of synchrotron techniques to integrate different signatures across length scales (angstrom to micrometer) to detect and differentiate between contrasting UO₂ fuel fabrication techniques.

Multimodal correlative imaging and modelling of phosphorus uptake from soil by hyphae of mycorrhizal fungi

Phosphorus (P) is essential for plant growth. Arbuscular mycorrhizal fungi (AMF) aid its uptake by acquiring P from sources distant from roots in return for carbon. Little is known about how AMF colonise soil pore-space, and models of AMF-enhanced P-uptake are poorly validated. We used synchrotron X-ray computed tomography to visualize mycorrhizas in soil and synchrotron X-ray fluorescence/X-ray absorption near edge structure (XRF/XANES) elemental mapping for P, sulphur (S) and aluminium (Al) in combination with modelling. We found that AMF inoculation had a suppressive effect on colonisation by other soil fungi and identified differences in structure and growth rate between hyphae of AMF and nonmycorrhizal fungi. Our results showed that AMF co-locate with areas of high P and low Al, and preferentially associate with organic-type P species over Al-rich inorganic P. We discovered that AMF avoid Al-rich areas as a source of P. Sulphur-rich regions were found to be correlated with higher hyphal density and an increased organic-associated P-pool, whilst oxidized S-species were found close to AMF hyphae. Increased S oxidation close to AMF suggested the observed changes were microbiome-related. Our experimentally-validated model led to an estimate of P-uptake by AMF hyphae that is an order of magnitude lower than rates previously estimated - a result with significant implications for the modelling of plant-soil-AMF interactions.

Ferrihydrite enrichment in the rhizosphere of unsaturated soil improves nutrient retention while limiting arsenic and uranium plant uptake

Improvement of nutrient use efficiency and limiting trace elements such as arsenic and uranium bioavailability is critical for sustainable agriculture and food safety. Arsenic and uranium possess different properties and mobility in soils, which complicates the effort to reduce their uptake by plants. Here, we postulate that unsaturated soil amended with ferrihydrite nanominerals leads to improved nutrient retention and helps reduce uptake of these geogenic contaminants. Unsaturated soil is primarily oxic and can provide a stable environment for ferrihydrite nanominerals. To demonstrate the utility of ferrihydrite soil amendment, maize was grown in an unsaturated agricultural soil that is known to contain geogenic arsenic and uranium. The soil was maintained at a gravimetric moisture content of 15.1 ± 2.5%, typical of periodically irrigated soils of the US Corn Belt. Synthetic 2-line ferrihydrite was used in low doses as a soil amendment at three levels (0.00% w/w (control), 0.05% w/w and 0.10% w/w). Further, the irrigation water was fortified (~50 μg L^-1 each) with elevated arsenic and uranium levels. Plant dry biomass at maturity was ~13.5% higher than that grown in soil not receiving ferrihydrite, indicating positive impact of ferrihydrite on plant growth. Arsenic and uranium concentrations in maize crops (root, shoot and grain combined) were ~ 20% lower in amended soils than that in control soils. Our findings suggest that the addition of low doses of iron nanomineral soil amendment can positively influence rhizosphere geochemical processes, enhancing nutrient plant availability and reduce trace contaminants plant uptake in sprinkler irrigated agroecosystem, which is 55% of total irrigated area in the United States.

Co-fertilization of Sulfur and Struvite-Phosphorus in a Slow-Release Fertilizer Improves Soybean Cultivation

In face of the alarming world population growth predictions and its threat to food security, the development of sustainable fertilizer alternatives is urgent. Moreover, fertilizer performance should be assessed not only in terms of yield but also in root system development, as it impacts soil fertility and crop productivity. Fertilizers containing a polysulfide matrix (PS) with dispersed struvite (St) were studied for S and P nutrition due to their controlled-release behavior. Soybean cultivation in a closed system with St/PS composites provided superior biomass compared to a reference of triple superphosphate (TSP) with ammonium sulfate (AS), with up to 3 and 10 times higher mass of shoots and roots, respectively. Root system architectural changes may explain these results, with a higher proliferation of second order lateral roots in response to struvite ongoing P delivery. The total root length was between 1,942 and 4,291 cm for plants under St/PS composites and only 982 cm with TSP/AS. While phosphorus uptake efficiency was similar in all fertilized treatments (11-14%), St/PS achieved a 22% sulfur uptake efficiency against only 8% from TSP/AS. Overall, the composites showed great potential as efficient slow-release fertilizers for enhanced soybean productivity.

Comparison of methods for mapping rhizosphere processes in the context of their surrounding root and soil environments

The rhizosphere embodies a complex biogeochemical zone with enhanced rates of nutrient exchange between plants, soil, and microbial communities. Understanding controls on rhizosphere dynamics is critical to support emerging concepts including rhizosphere engineering and reduced dependence on chemical fertilizers which have direct application to food production, increased biofuel generation, and habitat restoration efforts. Yet, its fine spatial scale and complex interactions between geochemical and microbial processes within complex spatiotemporal gradients make the rhizosphere notoriously difficult to study. Emerging instrumentation and methodologies, however, are providing improved resolution to rhizosphere measurements and helping to address critical knowledge gaps in rhizosphere function, ecology, and establishment. Here, we examine recent advances in analysis techniques and the resulting potential for improved understanding of rhizosphere function.

Long-term dissolution and transformation of ZnO in soils: The roles of soil pH and ZnO particle size

The ongoing use of ZnO nanoparticles (NPs)-associated commercial products results in large release of ZnO NPs into soils and has prompted systematic investigation regarding their fractionation and fate in soils. To date, little information is available about the long-term dissolution and transformation of ZnO NPs in different soils. The distribution and speciation of Zn in two different soils (i.e., Red soil (RS) and Wushantu soil (WS)) treated with either ZnO NPs or bulk ZnO were elucidated by combining soil incubation study with synchrotron-based techniques. Results revealed that ZnO NPs and bulk ZnO were almost dissolved after 1 day, indicating their rapid dissolution upon entering RS (pH-acidic). Rapid dissolution of ZnO NPs was also observed even in WS (pH- circumneutral). The solubilized Zn²⁺ released from ZnO particles was completely transformed into stable forms (e.g., Zn-Al LDH, Zn-OM, and Zn(OH)₂) and Zn-Al LDH was the dominant species in WS after incubation for 360 days. A majority of solubilized Zn²⁺ released from ZnO particles was also transformed into Zn-Al LDH precipitate in RS. The findings of this study facilitate a better understanding of the fate of ZnO in soils, which could be leveraged for remediation of ZnO-polluted soils.