Light quality and quantity regulate aerobic methane emissions from plants

Aerobic methane production in Scots pine shoots is independent of drought or photosynthesis

Shoot-level emissions of aerobically produced methane (CH4) may be an overlooked source of tree-derived CH4, but insufficient understanding of the interactions between their environmental and physiological drivers still prevents the reliable upscaling of canopy CH4 fluxes. We utilised a novel automated chamber system to continuously measure CH4 fluxes from the shoots of Pinus sylvestris (Scots pine) saplings under drought to investigate how canopy CH4 fluxes respond to the drought-induced alterations in their physiological processes and to isolate the shoot-level production of CH4 from soil-derived transport and photosynthesis. We found that aerobic CH4 emissions are not affected by the drought-induced stress, changes in physiological processes, or decrease in photosynthesis. Instead, these emissions vary on short temporal scales with environmental drivers such as temperature, suggesting that they result from abiotic degradation of plant compounds. Our study shows that aerobic CH4 emissions from foliage are distinct from photosynthesis-related processes. Thus, instead of photosynthesis rates, it is more reliable to construct regional and global estimates for the aerobic CH4 emission based on regional differences in foliage biomass and climate, also accounting for short-term variations of weather variables such as air temperature and solar radiation.

Comparative analysis of two kinds of garlic seedings: qualities and transcriptional landscape

BACKGROUND

Facility cultivation is widely applied to meet the increasing demand for high yield and quality, with light intensity and light quality being major limiting factors. However, how changes in the light environment affect development and quality are unclear in garlic. When garlic seedlings are grown, they can also be exposed to blanching culture conditions of darkness or low-light intensity to ameliorate their appearance and modify their bioactive compounds and flavor.

RESULTS

In this study, we determined the quality and transcriptomes of 14-day-old garlic and blanched garlic seedlings (green seedlings and blanched seedlings) to explore the mechanisms by which seedlings integrate light signals. The findings revealed that blanched garlic seedlings were taller and heavier in fresh weight compared to green garlic seedlings. In addition, the contents of allicin, cellulose, and soluble sugars were higher in the green seedlings. We also identified 3,872 differentially expressed genes between green and blanched garlic seedlings. The Kyoto Encyclopedia of Genes and Genomes analysis suggested enrichment for plant-pathogen interactions, phytohormone signaling, mitogen-activated protein kinase signaling, and other metabolic processes. In functional annotations, pathways related to the growth and formation of the main compounds included phytohormone signaling, cell wall metabolism, allicin biosynthesis, secondary metabolism and MAPK signaling. Accordingly, we identified multiple types of transcription factor genes involved in plant-pathogen interactions, plant phytohormone signaling, and biosynthesis of secondary metabolites among the differentially expressed genes between green and blanched garlic seedlings.

CONCLUSIONS

Blanching culture is one facility cultivation mode that promotes chlorophyll degradation, thus changing the outward appearance of crops, and improves their flavor. The large number of DEGs identified confirmed the difference of the regulatory machinery under two culture system. This study increases our understanding of the regulatory network integrating light and darkness signals in garlic seedlings and provides a useful resource for the genetic manipulation and cultivation of blanched garlic seedlings.

Solar radiation drives methane emissions from the shoots of Scots pine

Plants are recognized as sources of aerobically produced methane (CH₄ ), but the seasonality, environmental drivers and significance of CH₄ emissions from the canopies of evergreen boreal trees remain poorly understood. We measured the CH₄ fluxes from the shoots of Pinus sylvestris (Scots pine) and Picea abies (Norway spruce) saplings in a static, non-steady-state chamber setup to investigate if the shoots of boreal conifers are a source of CH₄ during spring. We found that the shoots of Scots pine emitted CH₄ and these emissions correlated with the photosynthetically active radiation. For Norway spruce, the evidence for CH₄ emissions from the shoots was inconclusive. Our study shows that the canopies of evergreen boreal trees are a potential source of CH₄ in the spring and that these emissions are driven by a temperature-by-light interaction effect of solar radiation either directly or indirectly through its effects on tree physiological processes.

Making plant methane formation visible-Insights from application of 13C-labeled dimethyl sulfoxide

Methane (CH₄) formation by vegetation has been studied intensively over the last 15 years. However, reported CH₄ emissions vary by several orders of magnitude, thus making global estimates difficult. Moreover, the mechanism(s) for CH₄ formation by plants is (are) largely unknown.Here, we introduce a new approach for making CH₄ formation by plants clearly visible. By application of ¹³C-labeled dimethyl sulfoxide (DMSO) onto the leaves of tobacco plants (Nicotiana tabacum) and Chinese silver grass (Miscanthus sinensis) the effect of light and dark conditions on CH₄ formation of this pathway was examined by monitoring stable carbon isotope ratios of headspace CH₄ (δ¹³C-CH₄ values).Both plant species showed increasing headspace δ¹³C-CH₄ values while exposed to light. Higher light intensities increased CH₄ formation rates in N. tabacum but decreased rates for M. sinensis. In the dark no formation of CH₄ could be detected for N. tabacum, while M. sinensis still produced ~50% of CH₄ compared to that during light exposure.Our findings suggest that CH₄ formation is clearly dependent on light conditions and plant species and thus indicate that DMSO is a potential precursor of vegetative CH₄. The novel isotope approach has great potential to investigate, at high temporal resolution, physiological, and environmental factors that control pathway-specific CH₄ emissions from plants.

New insight to the role of microbes in the methane exchange in trees: evidence from metagenomic sequencing

Methane (CH₄ ) exchange in tree stems and canopies and the processes involved are among the least understood components of the global CH₄ cycle. Recent studies have focused on quantifying tree stems as sources of CH₄ and understanding abiotic CH₄ emissions in plant canopies, with the role of microbial in situ CH₄ formation receiving less attention. Moreover, despite initial reports revealing CH₄ consumption, studies have not adequately evaluated the potential of microbial CH₄ oxidation within trees. In this paper, we discuss the current level of understanding on these processes. Further, we demonstrate the potential of novel metagenomic tools in revealing the involvement of microbes in the CH₄ exchange of plants, and particularly in boreal trees. We detected CH₄ -producing methanogens and novel monooxygenases, potentially involved in CH₄ consumption, in coniferous plants. In addition, our field flux measurements from Norway spruce (Picea abies) canopies demonstrate both net CH₄ emissions and uptake, giving further evidence that both production and consumption are relevant to the net CH₄ exchange. Our findings, together with the emerging diversity of novel CH₄ -producing microbial groups, strongly suggest microbial analyses should be integrated in the studies aiming to reveal the processes and drivers behind plant CH₄ exchange.

Individual and interactive effects of temperature and light intensity on canola growth, physiological characteristics and methane emissions

Earlier studies have shown that plants produce methane (CH₄) under aerobic conditions, and that this emission is not microbial in nature. However, the precursors of aerobic CH₄ remain under debate, and the combined effects of environmental factors on plant-derived CH₄ requires further attention. The objective of this study was to determine the interactive effects of temperature and light intensity on CH₄ and other relevant plant parameters in canola (Brassica napus L.). Plants were grown under two temperature regimes (22/18 °C and 28/24 °C, 16 h light/8 h dark) and two light intensities (300 and 600 μmol photons m^-2 s^-1) for 21 days after one week of growth under 22/18 °C (16 h light/8 h dark). In this study, higher temperature had little effects on CH₄ emissions from plants, indicating the mitigating effects of higher light intensity. Higher light intensity, however, significantly decreased CH₄, which was inversely related to plant dry mass. Higher light intensity decreased stem height, leaf area ratio, chlorophyll, nitrogen balance index, leaf moisture, methionine (Met) and ethylene (C₂H₄), but increased specific leaf mass, photochemical quenching, flavonoids, epicuticular wax, lysine and tyrosine. The results revealed that increased CH₄ emissions from plants could be related to changes in plant physiological activities, which portrayed themselves in increased C₂H₄ evolution, and methylated amino acids, such as Met. We conclude that higher light intensity reduces Met and, in turn, CH₄ and C₂H₄ emissions, but lower light intensity enhances CH₄ formation through cleavage of methyl group of amino acids by reactive oxygen species, as previously suggested.

Comparative physiological and transcriptomic analysis of pear leaves under distinct training systems

Canopy architecture is critical in determining the light interception and distribution, and subsequently the photosynthetic efficiency and productivity. However, the physiological responses and molecular mechanisms by which pear canopy architectural traits impact on photosynthesis remain poorly understood. Here, physiological investigations coupled with comparative transcriptomic analyses were performed in pear leaves under distinct training systems. Compared with traditional freestanding system, flat-type trellis system (DP) showed higher net photosynthetic rate (P_N) levels at the most time points throughout the entire monitored period, especially for the interior of the canopy in sunny side. Gene ontology analysis revealed that photosynthesis, carbohydrate derivative catabolic process and fatty acid metabolic process were over-represented in leaves of DP system with open-canopy characteristics. Weighted gene co-expression network analysis uncovered a significant network module positive correlated with P_N value. The hub genes (PpFKF1 and PpPRR5) of the module were enriched in circadian rhythm pathway, suggesting a functional role for circadian clock genes in mediating photosynthetic performance under distinct training systems. These results draw a link between pear photosynthetic response and specific canopy architectural traits, and highlight light harvesting and circadian clock network as potential targets for the input signals from the fluctuating light availability under distinct training systems.

The role of methane in plant physiology: a review

Methane (CH₄), one of the most important greenhouse gases, has conventionally been considered as a physiologic inert gas. However, this perspective has been challenged by the observation that CH₄ has diverse biological functions in animals, such as anti-inflammatory, antioxidant, and anti-apoptosis. Meanwhile, it has now been identified as a possible candidate of gaseous signaling molecule in plants, although its biosynthetic and metabolic pathways as well as the mechanism(s) of CH₄ signaling have not fully understood yet. This paper aims to review the available evidence for the biological roles of CH₄ in regulating plant physiology. Although currently available reports do not fully support the notion of CH₄ as a gasotransmitter, they do show that CH₄ might be produced by an aerobic, non-microbial pathway from plants, and plays important roles in enhancing plant tolerance against abiotic stresses, such as salinity, drought, heavy metal exposure, and promoting root development, as well as delaying senescence and browning. Further results showed that CH₄ could interact with reactive oxygen species (ROS), other gaseous signaling molecules [e.g., nitric oxide (NO), carbon monoxide (CO), and hydrogen sulfide (H₂S)], and glutathione (GSH). These reports thus support the idea that plant-produced CH₄ might be a component of a survival strategy of plants. Finally, the possibility of CH₄ application in agriculture is preliminarily discussed.

Differential effects of environmental stressors on physiological processes and methane emissions in pea (Pisum sativum) plants at various growth stages

Many studies have investigated the effects of one or two environmental factors on methane (CH4) emissions from plants at a single growth stage, but the impact that multiple co-occurring stress factors may have on emissions at different growth stages has rarely been studied. The objective of this study was to examine the effects of temperature, ultraviolet-B (UVB) radiation, and watering regime on CH4 emissions and some relevant physiological characteristics of pea (Pisum sativum L. cv. 237 J Sundance) plants at three growth stages. We grew plants under two temperature regimes (22/18 °C and 28/24 °C; 16 h light/8 h dark), two UVB levels [0 and 5 kJ m-2 d-1] and two watering regimes (well-watered, watering plants to field capacity, and water-stressed, watering plants at wilting point). Measurements were then taken after 10, 20, and 30 days of growth under experimental conditions, following seven days of initial growth under 22/18 °C. Higher temperatures, UVB5, and water stress adversely affected photosynthesis and chlorophyll fluorescence, but increased CH4 emissions, which decreased with increased plant age. Also, interaction of higher temperatures and UVB5 reversed the pattern of CH4 emissions at growth stages, compared to that of other treatments. We conclude that CH4 emission decreases with plant age, and it is affected by stress factors through changes in physiological activities of plants.

Methane production and emissions in trees and forests

Contents Summary 35 I. Introduction 36 II. Tree CH₄ fluxes 36 III. Tree emissions of soil-produced CH₄ 40 IV. Tree-produced CH₄ 42 V. Trees in forest CH₄ budgets 44 VI. Conclusions 46 Acknowledgements 48 Author contributions 48 References 48 SUMMARY: Forest ecosystem methane (CH₄ ) research has focused on soils, but trees are also important sources and sinks in forest CH₄ budgets. Living and dead trees transport and emit CH₄ produced in soils; living trees and dead wood emit CH₄ produced inside trees by microorganisms; and trees produce CH₄ through an abiotic photochemical process. Here, we review the state of the science on the production, consumption, transport, and emission of CH₄ by living and dead trees, and the spatial and temporal dynamics of these processes across hydrologic gradients inclusive of wetland and upland ecosystems. Emerging research demonstrates that tree CH₄ emissions can significantly increase the source strength of wetland forests, and modestly decrease the sink strength of upland forests. Scaling from stem or leaf measurements to trees or forests is limited by knowledge of the mechanisms by which trees transport soil-produced CH₄ , microbial processes produce and oxidize CH₄ inside trees, a lack of mechanistic models, the diffuse nature of forest CH₄ fluxes, complex overlap between sources and sinks, and extreme variation across individuals. Understanding the complex processes that regulate CH₄ source-sink dynamics in trees and forests requires cross-disciplinary research and new conceptual models that transcend the traditional binary classification of wetland vs upland forest.

Unravelling the effects of blue light on aerobic methane emissions from canola

It is now well documented that plants produce methane (CH₄) under aerobic conditions. However, the nature of methane production in plants and all the potential precursors and environmental factors that can be involved in the process are not fully understood. Earlier studies have suggested several chemical compounds, including the amino acid methionine, as precursors of aerobic methane in plants, but none have explored other amino acids as potential precursors or blue light as a driving force of methane emission. We examined the effects of blue light, and the promoter or inhibitor of endogenous ethylene on methane and ethylene emissions, amino acids, and some plant physiological parameters in canola (Brassica napus). Plants were grown under four light conditions: no supplemental blue light, and low, medium, or high blue light, and exposed to three chemical treatments: no chemical application, ethylene promoter (kinetin), or ethylene inhibitor (silver nitrate). Regardless of chemical treatment, blue light significantly increased methane emission, which was accompanied by decreased plant biomass, gas exchange, and flavonoids, but by increased wax, and most amino acids. This study revealed that blue light drives aerobic methane emission from plants by releasing of methyl group from a number of amino acids, and that the methane production in plants may have several pathways.

Environmental effects of ozone depletion, UV radiation and interactions with climate change: UNEP Environmental Effects Assessment Panel, update 2017

The Environmental Effects Assessment Panel (EEAP) is one of three Panels of experts that inform the Parties to the Montreal Protocol. The EEAP focuses on the effects of UV radiation on human health, terrestrial and aquatic ecosystems, air quality, and materials, as well as on the interactive effects of UV radiation and global climate change. When considering the effects of climate change, it has become clear that processes resulting in changes in stratospheric ozone are more complex than previously held. Because of the Montreal Protocol, there are now indications of the beginnings of a recovery of stratospheric ozone, although the time required to reach levels like those before the 1960s is still uncertain, particularly as the effects of stratospheric ozone on climate change and vice versa, are not yet fully understood. Some regions will likely receive enhanced levels of UV radiation, while other areas will likely experience a reduction in UV radiation as ozone- and climate-driven changes affect the amounts of UV radiation reaching the Earth's surface. Like the other Panels, the EEAP produces detailed Quadrennial Reports every four years; the most recent was published as a series of seven papers in 2015 (Photochem. Photobiol. Sci., 2015, 14, 1-184). In the years in between, the EEAP produces less detailed and shorter Update Reports of recent and relevant scientific findings. The most recent of these was for 2016 (Photochem. Photobiol. Sci., 2017, 16, 107-145). The present 2017 Update Report assesses some of the highlights and new insights about the interactive nature of the direct and indirect effects of UV radiation, atmospheric processes, and climate change. A full 2018 Quadrennial Assessment, will be made available in 2018/2019.