Percutaneous aspiration of aortic valve vegetation in a patient with aortic valve endocarditis

Key Clinical Message

Percutaneous aspiration for debulking of vegetations in right-sided infective endocarditis has been well-described, however, this technique can be employed successfully for left-sided vegetations in select high-risk patients.

Abstract

We report a case of percutaneous aspiration of an aortic valve vegetation in a patient with prosthetic valve endocarditis. This novel approach was selected after patient declined surgical intervention for an enlarging vegetation despite antibiotic therapy. The procedure was successful, resulting in the complete removal of solid vegetation without complications.

Water table depth and plant species determine the direction and magnitude of methane fluxes in floodplain meadow soils

Methane (CH4) is a powerful greenhouse gas with ongoing efforts aiming to quantify and map emissions from natural and managed ecosystems. Wetlands play a significant role in the global CH4 budget, but uncertainties in their total emissions remain large, due to a combined lack of CH4 data and fuzzy boundaries between mapped ecosystem categories. European floodplain meadows are anthropogenic ecosystems that originated due to traditional management for hay cropping. These ecosystems are seasonally inundated by river water, and straddle the boundary between grassland and wetland ecosystems; however, an understanding of their CH4 function is lacking. Here, we established a replicated outdoor floodplain-meadow mesocosm experiment to test how water table depth (45, 30, 15 cm below the soil surface) and plant composition affect CH4 fluxes over an annual cycle. Water table was a major controller on CH4, with significantly higher fluxes (overall mean 9.3 mg m-2 d-1) from the high (15 cm) water table treatment. Fluxes from high water table mesocosms with bare soil were low (mean 0.4 mg m-2 d-1), demonstrating that vegetation drove high emissions. Larger emissions came from high water table mesocosms with aerenchymatous plant species (e.g. Alopecurus pratensis, mean 12.8 mg m-2 d-1), suggesting a role for plant-mediated transport. However, at low (45 cm) water tables A. pratensis mesocosms were net CH4 sinks, suggesting that there is plasticity in CH4 exchange if aerenchyma are present. Plant cutting to simulate a hay harvest had no effect on CH4, further supporting a role for plant-mediated transport. Upscaling our CH4 fluxes to a UK floodplain meadow using hydrological modelling showed that the meadow was a net CH4 source because oxic periods of uptake were outweighed by flooding-induced anoxic emissions. Our results show that floodplain meadows can be either small sources or sinks of CH4 over an annual cycle. Their CH4 exchange appears to respond to soil temperature, moisture status and community composition, all of which are likely to be modified by climate change, leading to uncertainty around the future net contribution of floodplain meadows to the CH4 cycle.

Reassessing the role of urban green space in air pollution control

The assumption that vegetation improves air quality is prevalent in scientific, popular, and political discourse. However, experimental and modeling studies show the effect of green space on air pollutant concentrations in urban settings is highly variable and context specific. We revisited the link between vegetation and air quality using satellite-derived changes of urban green space and air pollutant concentrations from 2,615 established monitoring stations over Europe and the United States. Between 2010 and 2019, stations recorded declines in ambient NO2, (particulate matter) PM10, and PM2.5 (average of -3.14% y-1), but not O3 (+0.5% y-1), pointing to the general success of recent policy interventions to restrict anthropogenic emissions. The effect size of total green space on air pollution was weak and highly variable, particularly at the street scale (15 to 60 m radius) where vegetation can restrict ventilation. However, when isolating changes in tree cover, we found a negative association with air pollution at borough to city scales (120 to 16,000 m) particularly for O3 and PM. The effect of green space was smaller than the pollutant deposition and dispersion effects of meteorological drivers including precipitation, humidity, and wind speed. When averaged across spatial scales, a one SD increase in green space resulted in a 0.8% (95% CI: -3.5 to 2%) decline in air pollution. Our findings suggest that while urban greening may improve air quality at the borough-to-city scale, the impact is moderate and may have detrimental street-level effects depending on aerodynamic factors like vegetation type and urban form.

Soil seed bank dynamics of two invasive alien plants in Nigeria: implications for ecosystem restoration

The assessment of seed banks could provide useful hints towards ensuring restoration planning and invasive species management. In this study, the impacts of two invaders such as Hyptis suaveolens and Urena lobata on the soil seed banks were investigated. We also assessed the seed characteristics of the invaders at the invaded sites. This was achieved using 10 sites each for H. suaveolens- and U. lobata-invaded habitats and -non-invaded habitats making a total of 30 sites. We collected 200 soil samples from each habitat type. A seedling emergence method was used to determine the seed bank recruitment of both invasive plants. The diversity indices of the above-ground vegetation of sites invaded by the two plants were significantly lower than those of the non-invaded sites. Only two plant species emerged from the seed banks of H. suaveolens and five plants from those of U. lobata when compared with non-invaded sites where 53 species emerged. A larger portion of the seeds was located in the soil's lower layer at all the sites invaded by H. suaveolens while those of U. lobata and non-invaded sites were found in the upper layers and there are significant associations between the habitats. The lower soil layers of the two species have the highest percentage of viable seeds. These results help us to understand more about the invasiveness of both species as related to their impacts on the seed banks and native vegetation. It also indicates that the native species that emerged from the invaded seed banks could be used for the restoration of the invaded habitats.

Dynamic Evolution of Aquaculture along the Bohai Sea Coastline and Implications for Eco-Coastal Vegetation Restoration Based on Remote Sensing

The expansion and intensification of coastal aquaculture around the Bohai Sea in China has reduced the tidal flats and damaged the coastal vegetation environment. However, there are few studies on the relationship between the evolution of coastal aquaculture and the variability of coastal vegetation, which limits our understanding of the impact of human activities on the coastal ecosystem. In this study, based on remote sensing technology, we firstly used a combination of a neural network classifier and manual correction to monitor the long-term dynamic changes in aquaculture in the Bohai Sea from 1984 to 2022. We then analyzed its evolution, as well as the relationship between the evolution of coastal aquaculture and the variability of coastal vegetation, in detail. Our study had three main conclusions. Firstly, the aquaculture along the coast of the Bohai Sea showed an expanding trend from 1984 to 2022, with an increase of 538%. Secondly, the spatiotemporal changes in the aquaculture centroids in different provinces and cities varied. The centroid of aquaculture in Liaoning Province was mainly distributed in the Liaodong Peninsula, and moved northwest; that in Hebei Province was distributed in the northeast and moved with no apparent pattern; the centroid of aquaculture in Tianjin was mainly distributed in the southeast and moved westward; and the centroid of aquaculture in Shandong Province was mainly distributed in the northwest and moved in a northwesterly direction. Finally, the expansion of aquaculture of the Bohai Sea has increased the regional NDVI and length of the corresponding coastline, and has made coastlines move toward the sea. Our results provide reliable data support and reference for ecologically managing aquaculture and coastal environmental protection in the Bohai Sea.

Infective Endocarditis by Lactobacillus Species-A Narrative Review

Bacteria of the genus Lactobacillus are microaerophilic or aerotolerant anaerobic Gram-positive non-spore-forming rods. They are considered essential members of the human gut microbiome; however, recent studies have revealed that these microorganisms are less predominant in the gut microbiome than initially thought. Lactobacillus spp. is mainly known for its use as a probiotic in foods and supplements to prevent and treat specific issues such as infectious diseases, irritable bowel syndrome, and diabetes mellitus. However, Lactobacillus spp. may occasionally cause infections such as bacteremia or infective endocarditis (IE). The present study aimed to review all cases of IE by Lactobacillus spp. and describe the epidemiology, microbiology, clinical characteristics, treatment, and outcomes of this infection by collecting relevant data from studies existing in Pubmed and Scopus until 28 September 2023. A total of 77 studies containing data for 82 patients were included. The median age was 56 years, and 69.6% were male. A prosthetic valve was present in 16% of patients, and 17.3% had previously been on probiotics. The aortic valve was the most commonly involved intracardiac site, followed by the mitral valve. Fever, embolic phenomena, sepsis, and heart failure were the most common clinical presentations. Aminoglycosides and penicillin were the most commonly used antimicrobials for definitive treatment. Surgery was performed in 53.7% of patients. Overall mortality was 17.1%. IE in prosthetic valves and presentation with shock were independently associated with overall mortality.

Critical role of water conditions in the responses of autumn phenology of marsh wetlands to climate change on the Tibetan Plateau

The Tibetan Plateau, housing 20% of China's wetlands, plays a vital role in the regional carbon cycle. Examining the phenological dynamics of wetland vegetation in response to climate change is crucial for understanding its impact on the ecosystem. Despite this importance, the specific effects of climate change on wetland vegetation phenology in this region remain uncertain. In this study, we investigated the influence of climate change on the end of the growing season (EOS) of marsh wetland vegetation across the Tibetan Plateau, utilizing satellite-derived Normalized Difference Vegetation Index (NDVI) data and observational climate data. We observed that the regionally averaged EOS of marsh vegetation across the Tibetan Plateau was significantly (p < .05) delayed by 4.10 days/decade from 2001 to 2020. Warming preseason temperatures were found to be the primary driver behind the delay in the EOS of marsh vegetation, whereas preseason cumulative precipitation showed no significant impact. Interestingly, the responses of EOS to climate change varied spatially across the plateau, indicating a regulatory role for hydrological conditions in marsh phenology. In the humid and cold central regions, preseason daytime warming significantly delayed the EOS. However, areas with lower soil moisture exhibited a weaker or reversed delay effect, suggesting complex interplays between temperature, soil moisture, and EOS. Notably, in the arid southwestern regions of the plateau, increased preseason rainfall directly delayed the EOS, while higher daytime temperatures advanced it. Our results emphasize the critical role of hydrological conditions, specifically soil moisture, in shaping marsh EOS responses in different regions. Our findings underscore the need to incorporate hydrological factors into terrestrial ecosystem models, particularly in cold and dry regions, for accurate predictions of marsh vegetation phenological responses to climate change. This understanding is vital for informed conservation and management strategies in the face of current and future climate challenges.

Hawaiian Treeline Ecotones: Implications for Plant Community Conservation under Climate Change

Species within tropical alpine treeline ecotones are predicted to be especially sensitive to climate variability because this zone represents tree species' altitudinal limits. Hawaiian volcanoes have distinct treeline ecotones driven by trade wind inversions. The local climate is changing, but little is known about how this influences treeline vegetation. To predict future impacts of climate variability on treelines, we must define the range of variation in treeline ecotone characteristics. Previous studies highlighted an abrupt transition between subalpine grasslands and wet forest on windward Haleakalā, but this site does not represent the diversity of treeline ecotones among volcanoes, lava substrates, and local climatic conditions. To capture this diversity, we used data from 225 plots spanning treelines (1500-2500 m) on Haleakalā and Mauna Loa to characterize ecotonal plant communities. Treeline indicator species differ by moisture and temperature, with common native species important for wet forest, subalpine woodland, and subalpine shrubland. The frequency or abundance of community indicator species may be better predictors of shifting local climates than the presence or absence of tree life forms per se. This study further supports the hypothesis that changes in available moisture, rather than temperature, will dictate the future trajectory of Hawaiian treeline ecotone communities.

Understanding Bartonella-Associated Infective Endocarditis: Examining Heart Valve and Vegetation Appearance and the Role of Neutrophilic Leukocytes

BACKGROUND

The endocardium and cardiac valves undergo severe impact during infective endocarditis (IE), and the formation of vegetation places IE patients at a heightened risk of embolic complications and mortality. The relevant literature indicates that 50% of IE cases exhibit structurally normal cardiac valves, with no preceding history of heart valve disease. Gram-positive cocci emerge as the predominant causative microorganisms in IE, while Gram-negative Bartonella spp., persisting in the endothelium, follow pathogenic pathways distinct from those of typical IE-causing agents. Employing clinical as well as advanced microbiological and molecular assays facilitated the identification of causative pathogens, and various morphological methods were applied to evaluate heart valve damage, shedding light on the role of neutrophilic leukocytes in host defense. In this research, the immunohistochemical analysis of neutrophilic leukocyte activation markers such as myeloperoxidase, neutrophil elastase, calprotectin, and histone H3, was performed. A distinct difference in the expression patterns of these markers was observed when comparing Bartonella spp.-caused and non-Bartonella spp.-caused IE. The markers exhibited significantly higher expression in non-Bartonella spp.-caused IE compared to Bartonella spp.-caused IE, and they were more prevalent in vegetation than in the valvular leaflets. Notably, the expression of these markers in all IE cases significantly differed from that in control samples. Furthermore, we advocated the use of 16S rRNA Next-Generation Sequencing on excised heart valves as an effective diagnostic tool for IE, particularly in cases where blood cultures yielded negative results. The compelling results achieved in this study regarding the enigmatic nature of Bartonella spp. IE's pathophysiology contribute significantly to our understanding of the peculiarities of inflammation and immune responses.

Acute endocarditis complicated by left ventricular pseudoaneurysm with acute bloody pericardial effusion: A case report

RATIONALE

Delay in seeking medical attention for high fever and inadequate diagnosis can lead to rapid progression of inflammation and spread to surrounding tissues and organs. Staphylococcus aureus is a common cause of systemic infections, and infectious endocarditis can swiftly become severe; therefore, careful management is required.

PATIENT CONCERNS

A 54-year-old woman was admitted to our hospital with high fever and progressive loss of consciousness. Meningitis was suspected, and antibiotic treatment was initiated. Blood culture revealed methicillin-sensitive Staphylococcus aureus. Subsequently, the patient developed hypotension, bradycardia, and cardiac arrest and underwent emergency cardiopulmonary resuscitation.

DIAGNOSES

Transesophageal echocardiography performed during the procedure revealed significant vegetation at the posterior leaflet of the mitral valve, an abscess at the valve annulus, and a pseudoaneurysm of the left ventricular posterior wall.

INTERVENTIONS

The patient underwent emergency small incision pericardiotomy drainage, and her blood pressure and heart rate stabilized. After pericardial drainage, acute renal failure, fulminant hepatitis, and disruption of coagulation function were observed, and she was treated with plasma exchange therapy and intravenous immunoglobulin. Resection of the huge vegetation, debridement, patch closure of the ventricular perforation, and mitral valve replacement were performed.

OUTCOMES

Surgical findings showed massive vegetation in the posterior leaflet of the mitral valve, an annular abscess in the posterior leaflet of the mitral valve connected to the left ventricular posterior wall, and a pseudoaneurysm. Postoperatively, her pseudoaneurysm resolved and her cardiac function stabilized, while circulatory failure due to bacteremia progressed, and she gradually developed acidosis and unstable blood pressure. Plasma exchange and continuous hemodiafiltration were continued; however, she died of progressive multiorgan failure.

LESSON

Staphylococcus aureus bacteremia can cause fatal complications. Even when symptoms of meningitis are suspected, it is essential to examine the patient for endocarditis. Delayed diagnosis can lead to fatal endocarditis-related complications.

Successional theories

Succession is a fundamental concept in ecology because it indicates how species populations, communities, and ecosystems change over time on new substrate or after a disturbance. A mechanistic understanding of succession is needed to predict how ecosystems will respond to land-use change and to design effective ecosystem restoration strategies. Yet, despite a century of conceptual advances a comprehensive successional theory is lacking. Here we provide an overview of 19 successional theories ('models') and their key points, group them based on conceptual similarity, explain conceptual development in successional ideas and provide suggestions how to move forward. Four groups of models can be recognised. The first group (patch & plants) focuses on plants at the patch level and consists of three subgroups that originated in the early 20th century. One subgroup focuses on the processes (dispersal, establishment, and performance) that operate sequentially during succession. Another subgroup emphasises individualistic species responses during succession, and how this is driven by species traits. A last subgroup focuses on how vegetation structure and underlying demographic processes change during succession. A second group of models (ecosystems) provides a more holistic view of succession by considering the ecosystem, its biota, interactions, diversity, and ecosystem structure and processes. The third group (landscape) considers a larger spatial scale and includes the effect of the surrounding landscape matrix on succession as the distance to neighbouring vegetation patches determines the potential for seed dispersal, and the quality of the neighbouring patches determines the abundance and composition of seed sources and biotic dispersal vectors. A fourth group (socio-ecological systems) includes the human component by focusing on socio-ecological systems where management practices have long-lasting legacies on successional pathways and where regrowing vegetations deliver a range of ecosystem services to local and global stakeholders. The four groups of models differ in spatial scale (patch, landscape) or organisational level (plant species, ecosystem, socio-ecological system), increase in scale and scope, and reflect the increasingly broader perspective on succession over time. They coincide approximately with four periods that reflect the prevailing view of succession of that time, although all views still coexist. The four successional views are: succession of plants (from 1910 onwards) where succession was seen through the lens of species replacement; succession of communities and ecosystems (from 1965 onwards) when there was a more holistic view of succession; succession in landscapes (from 2000 onwards) when it was realised that the structure and composition of landscapes strongly impact successional pathways, and increased remote-sensing technology allowed for a better quantification of the landscape context; and succession with people (from 2015 onwards) when it was realised that people and societal drivers have strong effects on successional pathways, that ecosystem processes and services are important for human well-being, and that restoration is most successful when it is done by and for local people. Our review suggests that the hierarchical successional framework of Pickett is the best starting point to move forward as this framework already includes several factors, and because it is flexible, enabling application to different systems. The framework focuses mainly on species replacement and could be improved by focusing on succession occurring at different hierarchical scales (population, community, ecosystem, socio-ecological system), and by integrating it with more recent developments and other successional models: by considering different spatial scales (landscape, region), temporal scales (ecosystem processes occurring over centuries, and evolution), and by taking the effects of the surrounding landscape (landscape integrity and composition, the disperser community) and societal factors (previous and current land-use intensity) into account. Such a new, comprehensive framework could be tested using a combination of empirical research, experiments, process-based modelling and novel tools. Applying the framework to seres across broadscale environmental and disturbance gradients allows a better insight into what successional processes matter and under what conditions.

Variation in local population size predicts social network structure in wild songbirds

The structure of animal societies is a key determinant of many ecological and evolutionary processes. Yet, we know relatively little about the factors and mechanisms that underpin detailed social structure. Among other factors, social structure can be influenced by habitat configuration. By shaping animal movement decisions, heterogeneity in habitat features, such as vegetation and the availability of resources, can influence the spatiotemporal distribution of individuals and subsequently key socioecological properties such as the local population size and density. Differences in local population size and density can impact opportunities for social associations and may thus drive substantial variation in local social structure. Here, we investigated spatiotemporal variation in population size at 65 distinct locations in a small songbird, the great tit (Parus major) and its effect on social network structure. We first explored the within-location consistency of population size from weekly samples and whether the observed variation in local population size was predicted by the underlying habitat configuration. Next, we created social networks from the birds' foraging associations at each location for each week and examined if local population size affected social structure. We show that population size is highly repeatable within locations across weeks and years and that some of the observed variation in local population size was predicted by the underlying habitat, with locations closer to the forest edge having on average larger population sizes. Furthermore, we show that local population size affected social structure inferred by four global network metrics. Using simple simulations, we then reveal that much of the observed social structure is shaped by social processes. Across different population sizes, the birds' social structure was largely explained by their preference to forage in flocks. In addition, over and above effects of social foraging, social preferences between birds (i.e. social relationships) shaped certain network features such as the extent of realized social connections. Our findings thus suggest that individual social decisions substantially contribute to shaping certain social network features over and above effects of population size alone.

Floristic-Vegetational Features of Geranium argenteum, an Alpine-Apennine Species at Its Limit of Distribution in the Apennines

We present a floristic-vegetational study on a plant community dominated by Geranium argenteum in the Sibillini Mountains (Central Apennines), at the southern limit of its distribution in the Apennines. It is a rare pioneer community located at an elevation of about 2100 m a.s.l. with northern exposure on the fractured rocky ridges and at the edges of the rocky detrital valleys on lithosol, with a prolonged presence of snowpack and gelifraction processes. The results of the phytosociological analysis allow us to propose the new Festuco italicae-Geranietum argentei association referred to as the Leontopodio nivalis-Elynion myosuroidis alliance (Carici rupestris-Kobresietea bellardii class). The comparison with the Alpine and the Northern Apennines phytocoenoses characterized by Geranium argenteum allows us to provide a new interpretation of the syntaxonomical framework concerning the Geranium argenteum communities within its Alpine-Apennine range in light of the new data presented in this paper. The new Festuco italicae-Geranietum argentei association represents a further contribution to the knowledge of the relict alpine vegetation of the Leontopodio nivalis-Elynion myosuroidis alliance in the Sibillini Mountains and thus in the Central Apennines. Finally, habitat monitoring will be essential for assessing the impacts of climate change on this fragile and narrowly restricted plant community.

Cool shade and not-so-cool shade: How habitat loss may accelerate thermal stress under current and future climate

Worldwide habitat loss, land-use changes, and climate change threaten biodiversity, and we urgently need models that predict the combined impacts of these threats on organisms. Current models, however, overlook microhabitat diversity within landscapes and so do not accurately inform conservation efforts, particularly for ectotherms. Here, we built and field-parameterized a model to examine the effects of habitat loss and climate change on activity and microhabitat selection by a diurnal desert lizard. Our model predicted that lizards in rock-free areas would reduce summer activity levels (e.g. foraging, basking) and that future warming will gradually decrease summer activity in rocky areas, as even large rocks become thermally stressful. Warmer winters will enable more activity but will require bushes and small rocks as shade retreats. Hence, microhabitats that may seem unimportant today will become important under climate change. Modelling frameworks should consider the microhabitat requirements of organisms to improve conservation outcomes.

Relationships between plant species richness and grazing intensity in a semiarid ecosystem

Plant species richness is an important property of ecosystems that is altered by grazing. In a semiarid environment, we tested the hypotheses that (1) small-scale herbaceous plant species richness declines linearly with increasing grazing intensity by large ungulates, (2) precipitation and percent sand interact with grazing intensity, and (3) response of herbaceous plant species richness to increasing intensity of ungulate grazing varies with patch productivity. During January-March 2012, we randomly allocated 50, 1.5-m × 1.5-m grazing exclosures within each of six 2500 ha study sites across South Texas, USA. We counted the number of herbaceous plant species and harvested vegetation in 0.25-m2 plots within exclosures (ungrazed control plots) and in the grazed area outside the exclosures (grazed treatment plots) during October-November 2012-2019. We estimated percent use (grazing intensity) based on the difference in herbaceous plant standing crop between control plots and treatment plots. We selected the negative binomial regression model that best explained the relationship between grazing intensity and herbaceous plant species richness using the Schwarz-Bayesian information criterion. After accounting for the positive effect of precipitation and percent sand on herbaceous plant species richness, species richness/0.25 m2 increased slightly from 0% to 30% grazing intensity and then declined with increasing grazing intensity. Linear and quadratic responses of herbaceous plant species richness to increasing grazing intensity were greater for the least productive patches (<15.7 g/0.25 m2) than for productive patches (≥15.7 g/0.25 m2). Our results followed the pattern predicted by the intermediate disturbance hypothesis model for the effect of grazing intensity on small-scale herbaceous plant species richness.

North American pollen records provide evidence for macroscale ecological changes in the Anthropocene

Recent global changes associated with anthropogenic activities are impacting ecological systems globally, giving rise to the Anthropocene. Critical reorganization of biological communities and biodiversity loss are expected to accelerate as anthropogenic global change continues. Long-term records offer context for understanding baseline conditions and those trajectories that are beyond the range of normal fluctuation seen over recent millennia: Are we causing changes that are fundamentally different from changes in the past? Using a rich dataset of late Quaternary pollen records, stored in the open-access and community-curated Neotoma database, we analyzed changes in biodiversity and community composition since the end Pleistocene in North America. We measured taxonomic richness, short-term taxonomic loss and gain, first/last appearances (FAD/LAD), and abrupt community change. For all analyses, we incorporated age-model uncertainty and accounted for differences in sample size to generate conservative estimates. The most prominent signals of elevated vegetation change were seen during the Pleistocene-Holocene transition and since 200 calendar years before present (cal YBP). During the Pleistocene-Holocene transition, abrupt changes and FADs were elevated, and from 200 to -50 cal YBP, we found increases in short-term taxonomic loss, FADs, LADs, and abrupt changes. Taxonomic richness declined from ~13,000 cal YBP until about 6,000 cal YBP and then increased until the present, reaching levels seen during the end Pleistocene. Regionally, patterns were highly variable. These results show that recent changes associated with anthropogenic impacts are comparable to the landscape changes that took place as we moved from a glacial to interglacial world.

Easier said than done! Organic farmers consider free-ranging important for laying hen welfare but outdoor areas need more shelter - important gaps between research and practice

1. The aim of the present study was to investigate the design and management of free-range areas and their use by birds on commercial organic laying hen farms in Sweden and to document farmers' perspectives on outdoor access for poultry.2. Eleven Swedish organic laying hen farms were visited. The farmers were interviewed about general farm management, bird health and behaviour and outdoor access. The free-range areas were assessed in terms of proportion covered by protective (high) vegetation and any artificial shelters provided. The numbers of hens ranging at different distances from the house were recorded twice during the day.3. The outdoor area within 250m from the house contained 0-5% vegetation cover on six of the farms and at least 80% pasture on seven farms. On 10 farms, no more than 13% of the flock was observed outdoors. Of the hens observed in the free-range area, the median proportion ranging within 20m from the house or veranda per observation event was 99% (IQR=55-100%), confirming reports by the farmers.4. Free-range access was considered important by all farmers, primarily for welfare reasons and most agreed that protective vegetation cover and/or artificial shelters were important in encouraging free-ranging. However, there was marked variation among the farmers in their suggestions on how to attract hens outside.

Climate, not grazing, influences soil microbial diversity through changes in vegetation and abiotic factors on geographical patterns in the Eurasian steppe

Livestock grazing has a significant impact on the biodiversity of nature grassland ecosystems, which is mainly regulated by climate factors. Soil microbes are essential components of biogeochemical cycles. However, the coupling effects of grazing with MAT (mean annual temperature) and MAP (mean annual precipitation) on soil microbial communities remain inconsistent. Our study considered the various climates in four grasslands as natural temperature and precipitation gradients combined with grazing intensity (GI). We collected and analyzed vegetation and soil physiochemical properties from four grasslands. Our results showed that climate factors (CF) changed β diversity of soil bacteria and fungi while grazing intensity and their interaction merely affected fungi β diversity. Furthermore, climate factors and grazing intensity impacted changes in vegetation and soil physiochemical properties, with their interaction leading to changes in EC and MBC. Our analysis revealed that climate factors contributed 13.1% to bacteria community variation while grazing intensity contributed 3.01% to fungi community variation. Piecewise SEM analysis demonstrated that MAT and MAP were essential predictors of bacteria β diversity, which was significantly affected by vegetation and soil carbon and nitrogen. At the same time, MAP was an essential factor of fungi β diversity and was mainly affected by soil nitrogen. Our study indicated that bacteria and fungi β diversity was affected by different environmental processes and can adapt to specific grazing intensities over time.

Lesser Prairie-chicken incubation behavior and nest success most influenced by nest vegetation structure

Incubation breaks are necessary for any nesting bird but can increase the mortality risk of the nest or attending parent. How intrinsic and extrinsic variables affect nest attentiveness-the proportion of time a female is on nest during incubation- and subsequent survival of the nest remains unclear for uniparental species. We related female nest attentiveness to nest survival and tested the effects of intrinsic and extrinsic variables on nest attentiveness by female Lesser Prairie-chickens (Tympanuchus pallidicinctus) using GPS locations of 87 females at 109 nest sites in 3 study areas in Kansas during 2013-2015. Daily nest survival increased by 39% when nest attentiveness increased from 21% to 98%. Female Lesser Prairie-chickens were 18% less attentive as body mass increased from 600 to 920 g. Daily precipitation and temperature, controlled for days into the incubation period, had interactive effects on nest attentiveness with nest attentiveness lowest on cool, wet days and increasing as temperature increased, regardless of precipitation (41% attentiveness at 16°C and 79 mm of precipitation to 90% attentiveness at 37°C and 41 mm of precipitation). Nest attentiveness increased by 11% as the quantity of grass at the nest site increased from 5% to 78% when visual obstruction was at 1 and 2 decimeters (dm) and increased 9% as the quantity of grass at the nest site increased from 5% to 83% when visual obstruction was at its maximum (3 dm). Our findings reveal the critical importance of nest attentiveness and incubation behavior, not only in relation to demography, but within the context of changing environmental conditions. As warmer temperatures and extreme precipitation events become more common and change the growth rates of vegetation, species like the Lesser Prairie-chicken that are ground-nesting, rely on vegetation cover, and exhibit uniparental care could experience negative demographic consequences.

An enigmatic presentation of Escherichia coli endocarditis: Emphasizing the role of brain magnetic resonance imaging

Key Clinical Message

Infective endocarditis should be considered in any febrile individual with acute onset neurological symptoms. If suspicion is high, a negative brain computed tomography does not virtually exclude embolism, and magnetic resonance imaging is warranted.

Abstract

A diagnosis of infective endocarditis (IE) is often delayed, particularly in those infected with unusual organisms. Hereby, we report a case of a female patient presented with dysarthria, confusion, and altered mental status after being treated for Escherichia coli bacteremia. Computed tomography of the brain was unrevealing; however, scattered embolic phenomena were visualized on magnetic resonance imaging (MRI). The case underscores the importance of clinical awareness, particularly in the setting of unusual microorganisms, and the role of brain MRI in the diagnosis of IE.

Contribution of Geometric Feature Analysis for Deep Learning Classification Algorithms of Urban LiDAR Data

The use of a Machine Learning (ML) classification algorithm to classify airborne urban Light Detection And Ranging (LiDAR) point clouds into main classes such as buildings, terrain, and vegetation has been widely accepted. This paper assesses two strategies to enhance the effectiveness of the Deep Learning (DL) classification algorithm. Two ML classification approaches are developed and compared in this context. These approaches utilize the DL Pipeline Network (DLPN), which is tailored to minimize classification errors and maximize accuracy. The geometric features calculated from a point and its neighborhood are analyzed to select the features that will be used in the input layer of the classification algorithm. To evaluate the contribution of the proposed approach, five point-clouds datasets with different urban typologies and ground topography are employed. These point clouds exhibit variations in point density, accuracy, and the type of aircraft used (drone and plane). This diversity in the tested point clouds enables the assessment of the algorithm's efficiency. The obtained high classification accuracy between 89% and 98% confirms the efficacy of the developed algorithm. Finally, the results of the adopted algorithm are compared with both rule-based and ML algorithms, providing insights into the positioning of DL classification algorithms among other strategies suggested in the literature.

Multidimensional Drivers of Mercury Distribution in Global Surface Soils: Insights from a Global Standardized Field Survey

Soil stores a large amount of mercury (Hg) that has adverse effects on human health and ecosystem safety. Significant uncertainties still exist in revealing environmental drivers of soil Hg accumulation and predicting global Hg distribution owing to the lack of field data from global standardized analyses. Here, we conducted a global standardized field survey and explored a holistic understanding of the multidimensional environmental drivers of Hg accumulation in global surface soils. Hg content in surface soils from our survey ranges from 3.8 to 618.2 μg kg-1 with an average of 74.0 μg kg-1 across the globe. Atmospheric Hg deposition, particularly vegetation-induced elemental Hg0 deposition, is the major source of surface soil Hg. Soil organic carbon serves as the major substrate for sequestering Hg in surface soils and is significantly influenced by agricultural management, litterfall, and elevation. For human activities, changing land-use could be a more important contributor than direct anthropogenic emissions. Our prediction of a new global Hg distribution highlights the hot spots (high Hg content) in East Asia, the Northern Hemispheric temperate/boreal regions, and tropical areas, while the cold spots (low Hg content) are in arid regions. The holistic understanding of multidimensional environmental drivers helps to predict the Hg distribution in global surface soils under a changing global environment.

Testing concordance and conflict in spatial replication of landscape genetics inferences

The degree to which landscape genetics findings can be extrapolated to different areas of a species range is poorly understood. Here, we used a broadly distributed ectothermic lizard (Sceloporus occidentalis, Western Fence lizard) as a model species to evaluate the full role of topography, climate, vegetation, and roads on dispersal and genetic differentiation. We conducted landscape genetics analyses with a total of 119 individuals in five areas within the Sierra Nevada mountain range. Genetic distances calculated from thousands of ddRAD markers were used to optimize landscape resistance surfaces and infer the effects of landscape and topographic features on genetic connectivity. Across study areas, we found a great deal of consistency in the primary environmental gradients impacting genetic connectivity, along with some site-specific differences, and a range in the proportion of genetic variance explained by environmental factors across study sites. High-elevation colder areas were consistently found to be barriers to gene flow, as were areas of high ruggedness and slope. High temperature seasonality and high precipitation during the winter wet season also presented a substantial barrier to gene flow in a majority of study areas. The effect of other landscape variables on genetic differentiation was more idiosyncratic and depended on specific attributes at each site. Across study areas, canyon valleys were always implicated as facilitators to dispersal and key features linking populations and maintaining genetic connectivity, though the relative importance varied in different areas. We emphasize that spatial data layers are complex and multidimensional, and careful consideration of spatial data correlation structure and robust analytic frameworks will be critical to our continued understanding of spatial genetics processes.

A Model for the Determination of Potato Tuber Mass by the Measurement of Carbon Dioxide Concentration

The implementation of advanced precision farming systems, which are becoming relevant due to rapid technological development, requires the invention of new approaches to the diagnostics and control of the growing process of cultivated crops. This is especially relevant for potato, as it is one of the most demanded crops in the world. In the present work, an analytic model of the dependence of potato tubers mass on carbon dioxide concentration under cultivation in a closed vegetation system is presented. The model is based on the quantitative description of starch molecule synthesis from carbon dioxide under photosynthesis. In the frame of this work, a comprehensive description of the proposed model is presented, and the verification of this model was conducted on the basis of experimental data from a closed urban vertical farm with automated climate control. The described model can serve as a basis for the non-contact non-invasive real-time measurement of potato tuber mass under growth in closed vegetation systems, such as vertical farms and greenhouses, as well as orbital and space crop production systems.

Chlorine Distribution in Soil and Vegetation in Boreal Habitats along a Moisture Gradient from Upland Forest to Lake Margin Wetlands

The assumed dominance of chloride (Cl^-) in terrestrial ecosystems is challenged by observations of extensive formation of organically bound Cl (Cl_org), resulting in large soil Cl storage and internal cycling. Yet, little is known about the spatial distribution of Cl in ecosystems. We quantified patterns of Cl distribution in different habitats along a boreal hillslope moisture gradient ranging from relatively dry upland coniferous forests to wet discharge areas dominated by alder. We confirmed that dry habitats are important for Cl storage but found that Cl pools tended to be larger in moist and wet habitats. The storage of Cl_org was less important in wet habitats, suggesting a shift in the balance between soil chlorination and dechlorination rates. Cl concentrations in the herb layer vegetation were high in wet and moist sites attributed to a shift in plant species composition, indicating plant community-dependent ecosystem Cl cycling. Mass-balance calculations showed that internal Cl cycling increased overall ecosystem Cl residence times at all sites and that plant uptake rates of Cl^- were particularly high at wet sites. Our results indicate that habitat characteristics including plant communities and hydrology are key for understanding Cl cycling in the environment.

Contrasting ecosystem vegetation response in global drylands under drying and wetting conditions

Increasing aridity is one major consequence of ongoing global climate change and is expected to cause widespread changes in key ecosystem attributes, functions, and dynamics. This is especially the case in naturally vulnerable ecosystems, such as drylands. While we have an overall understanding of past aridity trends, the linkage between temporal dynamics in aridity and dryland ecosystem responses remain largely unknown. Here, we examined recent trends in aridity over the past two decades within global drylands as a basis for exploring the response of ecosystem state variables associated with land and atmosphere processes (e.g., vegetation cover, vegetation functioning, soil water availability, land cover, burned area, and vapor-pressure deficit) to these trends. We identified five clusters, characterizing spatiotemporal patterns in aridity between 2000 and 2020. Overall, we observe that 44.5% of all areas are getting dryer, 31.6% getting wetter, and 23.8% have no trends in aridity. Our results show strongest correlations between trends in ecosystem state variables and aridity in clusters with increasing aridity, which matches expectations of systemic acclimatization of the ecosystem to a reduction in water availability/water stress. Trends in vegetation (expressed by leaf area index [LAI]) are affected differently by potential driving factors (e.g., environmental, and climatic factors, soil properties, and population density) in areas experiencing water-related stress as compared to areas not exposed to water-related stress. Canopy height for example, has a positive impact on trends in LAI when the system is stressed but does not impact the trends in non-stressed systems. Conversely, opposite relationships were found for soil parameters such as root-zone water storage capacity and organic carbon density. How potential driving factors impact dryland vegetation differently depending on water-related stress (or no stress) is important, for example within management strategies to maintain and restore dryland vegetation.

An Illustration of FY-3E GNOS-R for Global Soil Moisture Monitoring

An effective soil moisture retrieval method for FY-3E (Fengyun-3E) GNOS-R (GNSS occultation sounder II-reflectometry) is developed in this paper. Here, the LAGRS model, which is totally oriented for GNOS-R, is employed to estimate vegetation and surface roughness effects on surface reflectivity. Since the LAGRS (land surface GNSS reflection simulator) model is a space-borne GNSS-R (GNSS reflectometry) simulator based on the microwave radiative transfer equation model, the method presented in this paper takes more consideration on the physical scattering properties for retrieval. Ancillary information from SMAP (soil moisture active passive) such as the vegetation water content and the roughness coefficient are investigated for the final algorithm's development. At first, the SR (surface reflectivity) data calculated from GNOS-R is calculated and then calibrated, and then the vegetation roughness factor is achieved and used to eliminate the effects on both factors. After receiving the Fresnel reflectivity, the corresponding soil moisture estimated from this method is retrieved. The results demonstrate good consistency between soil moisture derived from GNOS-R data and SMAP soil moisture, with a correlation coefficient of 0.9599 and a root mean square error of 0.0483 cm³/cm³. This method succeeds in providing soil moisture on a global scale and is based on the previously developed physical LAGRS model. In this way, the great potential of GNOS-R for soil moisture estimation is presented.

Cardiac pacemaker-related endocarditis complicated with pulmonary embolism: Case report

Cardiac device-related endocarditis as a device-therapy complication is a growing problem due to higher life expectancy and the increasing number of abandoned leads and subclinical symptoms. We reported a case of a 47-year-old woman with an implanted pacemaker who was admitted to the clinic for cardiology due to the right-sided device-related infective endocarditis of the pacemaker leads with vegetations, predominantly in the right atrium and right ventricle and complicated by pulmonary embolism. Several years after pacemaker implantation, she was diagnosed with systemic lupus erythematosus and started immunosuppressive therapy. The patient was treated with prolonged intravenous antibiotic therapy. The atrial and ventricular lead was extirpated, and the posterior leaflet of the tricuspid valve was shaved.

Relevance of Soil Heavy Metal XRF Screening for Quality and Landscaping of Public Playgrounds

Heavy metals have become widespread urban pollutants, exposing vulnerable age groups such as children to potential risk. Specialists need feasible approaches that can routinely assist them in customizing options for sustainable and safer urban playgrounds. The aim of this research was to explore the practical relevance of the X-ray Fluorescence (XRF) method from the perspective of landscaping specialists, and the practical significance of screening for those heavy metals that currently present elevated levels across urban environments Europe-wide. Soil samples from six public children's playgrounds of different typologies from Cluj-Napoca, Romania, were analyzed. The results indicated that this method was sensitive to identifying thresholds stipulated in legislation for the screened elements (V, Cr, Mn, Ni, Cu, Zn, As, and Pb). Coupled with the calculation of pollution indexes, this method can serve as a quick orientation in landscaping options for urban playgrounds. The pollution load index (PLI) for the screened metals showed that three sites displayed baseline pollution with incipient deterioration in soil quality (PLI = 1.01-1.51). The highest contribution to the PLI among the screened elements, depending on the site, was due to Zn, Pb, As, and Mn. The average levels of the detected heavy metals were within admissible limits according to national legislation. Implementable protocols addressed to different categories of specialists could help to transition towards safer playgrounds and more research on accurate cost-effective procedures to overcome the limitations of existing approaches is currently needed.

Relationship among vegetation structure and mixed-species flocks composition along the latitudinal gradient of the subtropical montane forest of the Yungas, Argentina

The structural and physiognomic characteristics of forests and mountain forest are fundamental aspects that influence the richness, abundance and composition in the bird community. The objective of the present work was to analyse how the vegetation structure could influence the species composition of mixed-species flocks (MSF), along the latitudinal gradient of the subtropical montane forest of the Yungas of Argentina. Eight sites were studied along the 700 km of distribution of the Argentine Yungas. Richness and abundance of MSF were determined. In addition, different variables of composition and structure of the vegetation were analysed. Multivariate analysis indicated that vertical strata coverage and litter depth were the main variables associated with changes in the species composition of MSF along the gradient. Variation in MSF composition within the Yungas was associated with the physiognomy of the subtropical montane forest, which could indicate that it is strongly linked to the condition of the local vegetation. Substantial changes in vegetation could drastically change the composition of the resident flocks. This article is part of the theme issue 'Mixed-species groups and aggregations: shaping ecological and behavioural patterns and processes'.

Human Settlement and Landscape Anthropization of Remote Oceanic Islands: A Comparison between Rapa Nui (Pacific Ocean) and the Azores (Atlantic Ocean)

The flora and vegetation of oceanic islands have been deeply affected by human settlement and further landscape modifications during prehistoric and historical times. The study of these transformations is of interest not only for understanding how current island biotas and ecological communities have been shaped but also for informing biodiversity and ecosystem conservation. This paper compares two oceanic insular entities of disparate geographical, environmental, biological, historical and cultural characteristics-Rapa Nui (Pacific Ocean) and the Azores Islands (Atlantic Ocean)-in terms of human settlement and further landscape anthropization. The similarities and differences between these islands/archipelagos are discussed considering their permanent colonization, the possibility of earlier settlements, the removal of the original forests and the further landscape transformations leading to either full floristic/vegetational degradation (Rapa Nui) or major replacement (Azores). This comparison uses evidence from varied disciplines, notably paleoecology, archaeology, anthropology and history, to obtain a holistic view of the development of the respective socioecological systems from a human ecodynamic perspective. The most relevant issues still to be resolved are identified and some prospects for future research are suggested. The cases of Rapa Nui and Azores Islands may help set a conceptual basis for ocean-wide global comparisons among oceanic islands/archipelagos.

The Alien Plant Species Impact in Rice Crops in Northwestern Italy

Alien species represent one of the causes of biodiversity loss, both in natural and anthropic environments. This study contributes to the assessment of alien species impact on Western Po Plain rice field cultivations, referring to different agricultural management practices and ecological traits. Flora and vegetation were studied (the latter through the phytosociological method), and α-biodiversity was estimated through Shannon and Simpson Indices. Results highlighted a significant floristic contingent depletion and increase in therophyte and alien components, compared to pre-existing studies (1950s); higher α-biodiversity levels in organic farms, compared to conventional farms, but also a higher invasive alien species percentage. The high deterioration of the territorial-landscape context appears to play a major role in shaping these patterns. Some of these alien species are particularly aggressive (e.g., Murdannia keisak), as confirmed by two experimental rice field plots which were left unharvested, continuously flooded, making it possible to assess the competitiveness between weed species. The detected weed vegetation is attributed to the Oryzo sativae-Echinochloetum cruris-galli association, already described for Southern Europe, with two different ecological and floristic variants. Future studies, by including other sites and framing their territorial-landscape context, may further complement this overview on the alien species distribution and behavior in rice fields, hence facilitating their strategic management.

Does Heart Failure Mask Candida Tricuspid Endocarditis?

Infective endocarditis (IE) carries high morbidity and mortality. Although minimal in incidence, fungal causes (mostly Candida species) carry the highest mortality among all cases of infective endocarditis. We describe a rare case of a 47-year-old male with a past medical history of cerebral vascular accident (CVA), heart failure with reduced ejection fraction status post (SP) automated implantable cardioverter defibrillator (AICD) placement, paroxysmal atrial fibrillation, coronary artery disease (CAD), infective endocarditis with mitral valve replacement and tricuspid valve replacement, and pulmonary hypertension who presented to the emergency department (ED) with complaints of shortness of breath and weakness for four days. The patient was admitted to the cardiac care unit (CCU) due to persistent hypotension despite being on a continuous milrinone drip at home. The patient was initially started on antimicrobial agents for sepsis most likely secondary to pneumonia. Echocardiographic imaging showed a large vegetation on the tricuspid valve; hence, blood cultures were sent and came back positive for Candida sp. Appropriate antifungals (micafungin) were added to the medication regimen, and the patient was transferred to a tertiary hospital for surgical intervention. Patients with bioprosthetic valve replacement require regular follow-ups as this would allow providers to catch symptoms of developing endocarditis and prevent disease progression. These appointments may also decrease other risk factors for the disease, including but not limited to infected lines.

Climate-informed forecasts reveal dramatic local habitat shifts and population uncertainty for northern boreal caribou

Most research on boreal populations of woodland caribou (Rangifer tarandus caribou) has been conducted in areas of high anthropogenic disturbance. However, a large portion of the species' range overlaps relatively pristine areas primarily affected by natural disturbances, such as wildfire. Climate-driven habitat change is a key concern for the conservation of boreal-dependent species, where management decisions have yet to consider knowledge from multiple ecological domains integrated into a cohesive and spatially explicit forecast of species-specific habitat and demography. We used a novel ecological forecasting framework to provide climate-sensitive projections of habitat and demography for five boreal caribou monitoring areas within the Northwest Territories (NWT), Canada, over 90 years. Importantly, we quantify uncertainty around forecasted mean values. Our results suggest habitat suitability may increase in central and southwest regions of the NWT's Taiga Plains ecozone but decrease in southern and northwestern regions driven by conversion of coniferous to deciduous forests. We do not project that boreal caribou population growth rates will change despite forecasted changes to habitat suitability. Our results emphasize the importance of efforts to protect and restore northern boreal caribou habitat despite climate uncertainty while highlighting expected spatial variations that are important considerations for local people who rely on them. An ability to reproduce previous work, and critical thought when incorporating sources of uncertainty, will be important to refine forecasts, derive management decisions, and improve conservation efficacy for northern species at risk.

Culture-negative tricuspid valve endocarditis in an intravenous drug abuser masquerading as pulmonary tuberculosis in Nepal: a case report

Infective endocarditis is an infection of the heart valves or endocardium caused by bacterial, viral, or fungal microorganisms. Blood cultures are used to detect the bacteria causing infective endocarditis, and echocardiography is performed to find the damaged heart valves. In blood culture-negative endocarditis, no endocarditis-causing organisms can be found in blood cultures, and blood cultures using usual laboratory methods remain sterile after inoculation of at least three independent blood samples.

Case presentation

A 24-year-old male with a history of polysubstance abuse presented with complaints of fever, cough, and shortness of breath. He had a past history of pulmonary tuberculosis 4 years ago, for which he was treated with antitubercular therapy. High-resolution computed tomography of the chest revealed multiple cavitary lesions and consolidative areas in the bilateral lungs. Based on these findings, a provisional diagnosis of reactivation of pulmonary tuberculosis was considered, and antitubercular therapy was started. Due to his deteriorating condition, he was readmitted and evaluated. Bronchoalveolar lavage was done and sent for culture and sensitivity testing, which showed the presence of Staphylococcus aureus, and treatment was started accordingly. Despite continuing intravenous antibiotics for 5 days, the patient was not improving. Three sets of samples were withdrawn for blood culture and sensitivity testing, which came out to be negative. Transthoracic echocardiography was done, which revealed vegetation in the tricuspid valve. The patient was diagnosed with culture-negative tricuspid valve endocarditis based on the clinical criteria.

Discussion

Blood culture-negative endocarditis is difficult to diagnose and presents challenges. When faced with a diagnosis like culture-negative endocarditis in the context of a condition that can appear very similar, like tuberculosis, a broad differential diagnostic approach is important.

Conclusion

Intravenous drug use is the main cause of right-sided valvular infective endocarditis. Endocarditis should be considered in intravenous drug users even in the absence of positive blood cultures. An appropriate antibiotic regimen and long-term follow-up with a multidisciplinary team are necessary for a good outcome.

Effects of Species Invasion and Inundation on the Collembola Community in Coastal Mudflat Wetland from the Perspective of Functional Traits

The group of soil arthropods known as Collembola is characterized by its abundance and sensitivity to environmental changes. They are ideal an species for soil indicators. In order to clarify the effects of species invasion and inundation on the Collembola community in coastal mudflat wetlands, the correlation between the collembolan functional traits and environmental factors was studied in Shanghai Jiuduansha Wetland National Nature Reserve for the first time. Five sample plots, including three vegetations-Spartina alterniflora (an invasive species), Phragmites australis, and Zizania latifolia-were set up following the differences in vegetation types and between high and low tidal flats. Data on the diversity of the Collembolan species and their functional traits were collected and combined with the soil physicochemical properties and vegetation environment factors in different tidal flats. The key findings and conclusions of the study are as follows: a total of 18 species, four families, and three orders make up the obtained Collembola, two species of Proisotoma are dominant species that account for 49.59% and 24.91% of the total, respectively. The maintenance of the species diversity of Collembola is disturbed by the higher conversion efficiency of Spartina alterniflora rather than Phragmites australis with lower organic carbon (C) content and higher total nitrogen (N) content. The primary environmental variables influencing species distribution were the C/N ratio, total N, and bulk soil density. The bulk density of the soil impacts the movement and dispersal of the functional traits. The depth of the soil layer is related to the functional traits of the sensory ability. The analysis of the functional traits and environment is fairly helpful in exploring how species respond to their environment and offers a better explanation for the habitat selection of Collembola.

Biogeographical Relationships and Diversity in the Peruvian Flora Reported by Hipólito Ruiz and José Pavón: Vegetation, Uses and Anthropology

The Royal Spanish Botanical Expedition to the Viceroyalty of Peru in the 18th century was one of the most important European expeditions to American territories. Using the herbarium sheets of Ruiz and Pavón (Royal Botanical Garden of Madrid) and their edited works, manuscripts and expedition diaries, we have constructed a database of the collected and observed flora, which has served as the basis for a map containing all of the Peruvian localities of the expedition. Based on the method of bioclimatic belts and our own observations, we have deduced to which type of vegetation the flora studied in the expedition belongs. The uses of the flora per locality were studied, as well as the ethnic groups involved in the different localities. By using a Principal Component Analysis, we have obtained the distribution of the bioclimatic belts whose vegetation was the most explored. In order to observe the bioclimatic tendency of plant uses, a Detrended Correspondence Analysis (DCA) was conducted to identify the distribution of localities with the highest frequencies of plant uses. The expedition's explorations focused on the most humid areas of the thermo- and mesotropical belts, from where a large number of plants with practical uses were obtained.

Initial ecological change in plant and arthropod community composition after wildfires in designated areas of upland peatlands

Wildfires are an increasing concern due to rising temperatures and incidence of droughts associated with changing climate, poor land management, and direct human interference. Most studies of the impact of fire on temperate heathland and bog examined the consequences of controlled or prescribed burning. Less is known about the impacts of uncontrolled wildfires on sites designated for their conservation value. We examined the initial impact and short-term trajectory (3.5 years) of cool temperate peatland plant and arthropod communities on designated upland sites in Northern Ireland following wildfires, that is, unplanned with respect to where and when they occur, severity, and duration. These near simultaneous wildfires were often due to a failure to control prescribed burns. Wildfires were associated with a loss of blanket bog and heath indicator species. Broad vegetation groups showed initial recovery characterized by a decrease in bare ground and increasing cover of shrub species and bryophytes. However, at a species level, Sphagnum spp and bryophyte communities, which are central to peatland ecosystem functioning, showed no sign of recovery to prefire composition. Rather, bryophyte communities became more divergent over the course of the study and were mainly characterized by increased abundance of the alien pioneer acrocarp Campylopus introflexus. Similarly, composition of arthropod communities (ground beetles and spiders) differed between burnt and unburnt areas and showed no evidence of a return to species composition in unburnt areas. The nationally rare beetle Carabus nitens was more common in the aftermath of wildfire. Synthesis. Whilst, long-term recovery was not investigated, these short-term changes suggest enduring detrimental impacts on the distinctive communities associated with peatlands, primarily through the loss of Sphagnum spp., affecting ecosystem services such as carbon sequestration and water and soil retention. It may not be possible to restore exact prefire species composition of plant and animal communities. We suggest a precautionary approach involving management of upland vegetation, public education, and vigilance, to prevent further wildfires and protect these key upland habitats.

The role of climate, vegetation, and soil factors on carbon fluxes in Chinese drylands

Drylands dominate the trend and variability of the land carbon (C) sink. A better understanding of the implications of climate-induced changes in the drylands for C sink-source dynamics is urgently needed. The effect of climate on ecosystem C fluxes (gross primary productivity (GPP), ecosystem respiration (ER), and net ecosystem productivity (NEP)) in drylands has been extensively explored, but the roles of other concurrently changing factors, such as vegetation conditions and nutrient availability, remain unclear. We used eddy-covariance C-flux measurements from 45 ecosystems with concurrent information on climate (mean annual temperature (MAT) and mean annual precipitation (MAP)), soil (soil moisture (SM) and soil total nitrogen content (soil N)), and vegetation (leaf area index (LAI) and leaf nitrogen content (LNC)) factors to assess their roles in C fluxes. The results showed that the drylands in China were weak C sinks. GPP and ER were positively correlated with MAP, while they were negatively correlated with MAT. NEP first decreased and then increased with increasing MAT and MAP, and 6.6 °C and 207 mm were the boundaries for the NEP response to MAT and MAP, respectively. SM, soil N, LAI, and MAP were the main factors affecting GPP and ER. However, SM and LNC had the most important influence on NEP. Compared with climate and vegetation factors, soil factors (SM and soil N) had a greater impact on C fluxes in the drylands. Climate factors mainly affected C fluxes by regulating vegetation and soil factors. To accurately estimate the global C balance and predict the response of ecosystems to environmental change, it is necessary to fully consider the discrepant effects of climate, vegetation, and soil factors on C fluxes, as well as the cascade relationships between different factors.

Biogeographic inferences across spatial and evolutionary scales

The field of biogeography unites landscape genetics and phylogeography under a common conceptual framework. Landscape genetics traditionally focuses on recent-time, population-based, spatial genetics processes at small geographical scales, while phylogeography typically investigates deep past, lineage- and species-based processes at large geographical scales. Here, we evaluate the link between landscape genetics and phylogeographical methods using the western fence lizard (Sceloporus occidentalis) as a model species. First, we conducted replicated landscape genetics studies across several geographical scales to investigate how population genetics inferences change depending on the spatial extent of the study area. Then, we carried out a phylogeographical study of population structure at two evolutionary scales informed by inferences derived from landscape genetics results to identify concordance and conflict between these sets of methods. We found significant concordance in landscape genetics processes at all but the largest geographical scale. Phylogeographical results indicate major clades are restricted to distinct river drainages or distinct hydrological regions. At a more recent timescale, we find minor clades are restricted to single river canyons in the majority of cases, while the remainder of river canyons include samples from at most two clades. Overall, the broad-scale pattern implicating stream and river valleys as key features linking populations in the landscape genetics results, and high degree of clade specificity within major topographic subdivisions in the phylogeographical results, is consistent. As landscape genetics and phylogeography share many of the same objectives, synthesizing theory, models and methods between these fields will help bring about a better understanding of ecological and evolutionary processes structuring genetic variation across space and time.

Pacemaker Associated Aspergillus fumigatus Endocarditis: A Case Report

Aspergillus endocarditis (AE) is a highly fatal infection that can occur in heart valve replacement, pacemaker implantation and other heart surgeries, and early recognition and sufficient diagnosis are challenging. Here, we report the case of a 68-year-old male with a history of dilated cardiomyopathy and pacemaker implantation who had a repeated fever with failed antibacterial treatment and sterile blood culture. He developed endocarditis, and the culture and biopsy of vegetation tissue showed the abundant presence of septate hyphae, which was subsequently identified as Aspergillus fumigatus by internal transcribed spacer (ITS) sequencing. Although the patient had serious side effects from voriconazole, he had a good prognosis following surgery and prolonged caspofungin antifungal therapy of 42 consecutive days. We discuss the diagnosis and treatment strategy of AE, and recommend galactomannan assays and next-generation sequencing for a timely diagnosis. Early surgical intervention combined with prompt antifungal therapy appears significant for survival.

Spatiotemporal variation in vegetation phenology and its response to climate change in marshes of Sanjiang Plain, China

Sanjiang Plain is the largest marsh distribution area of China, and marshes in this region significantly affect regional carbon cycle and biodiversity protection. The vegetation phenology of marsh significantly affects the energy exchange and carbon cycle in that region. Under the influence of global climatic change, identifying the changes in phenology and their responses to climatic variation in marshes of Sanjiang Plain is essential for predicting the carbon stocks of marsh ecosystem in that region. Using climate and NDVI data, this paper analyzed the spatiotemporal variations in the start (SOS), end (EOS), and length (LOS) of vegetation growing season and explored the impacts of climatic variation on vegetation phenology in marshes of Sanjiang Plain. Results showed that the SOS advanced by 0.30 days/a, and EOS delayed by 0.23 days/a, causing LOS to increase significantly (p < .05) by 0.53 days/a over marshes of Sanjiang Plain. Spatially, the large SOS advance and EOS delay resulted in an obvious increasing trend for LOS in northern Sanjiang Plain. The rise of spring and winter temperatures advanced the SOS and increased the LOS, and the rise in temperature in autumn delayed the EOS in marshes of Sanjiang Plain. Our findings highlight the necessity of considering seasonal climatic conditions in simulating marsh vegetation phenology and indicate that the different influences of climatic variation on marsh vegetation phenology in different regions should be fully considered to assess the marsh ecosystem response to climatic change in Sanjiang Plain.

Selection of Nest Material and Summer Nest Location by the Hazel Dormouse (Muscardinus avellanarius) in the Bidstrup Forests, Denmark

Hazel dormice (Muscardinus avellanarius) construct summer nests for resting and breeding. The nests are built directly in the vegetation, in tree hollows, or in nest boxes. The availability of nest materials and vegetation coverage may affect the likelihood of finding hazel dormice at a location. The aim of the study is: (1) To investigate the preferences of hazel dormice for nesting materials today compared to four decades ago. (2) To investigate hazel dormice preferences for vegetation coverage at nest sites. In total, 148 hazel dormouse summer nests from the Bidstrup forests in Zealand (Denmark), were analysed. Of these, 82 were collected in the period A: 1980−1985 and 66 were collected in B: 2019−2020. In total 26 different nest materials were found. Beech was the major nest material in both periods, and Jacob’s selectivity index indicates that beech is selected for as nesting material and that hazel dormice may travel to collect beech leaves. Nests from period A contained more beech (W = 1521, p < 0.05) and less oak (W = 1304, p < 0.01) compared to nests from period B. Vegetation analysis showed that coverage of shrubs higher than 2 m above ground (W = 1.5, p = 0.07) may be of great importance for hazel dormice.

Retrieval of an infectious leadless pacemaker with vegetation

This case discusses the retrieval of a pacemaker with vegetation from a 78-year-old man. It suggests that grasping side of Micra body and pulling Micra into Agilis sheath is a possible technique for retrieval.

Towards a continent-wide ecological site condition database using calibrated expert evaluations

A cost-effective way of undertaking comprehensive, continental-scale, assessments of ecological condition is needed to support large-scale conservation planning, monitoring, reporting, and decision-making. Currently, cross-jurisdictional inconsistency in assessment methods limits the capacity to scale-up monitoring. Here we present a novel way to build a coherent continent-wide site-level ecological condition dataset, using cross-calibration methods to integrate assessments from many observers. We focus on the use of condition assessments from individual expert observers, a currently untapped resource. Our approach has two components: (1) a simple online tool that captures expert assessments at specific locations; (2) a process of calibrating and rescaling disparate expert evaluations that can be applied to the data to provide a consistent dataset for use in conservation assessments. We describe a pilot study, involving 28 experts, who contributed 314 individual site condition assessments across a wide range of ecosystems and regions throughout continental Australia. A correction factor for each expert was used to rescale the contributed site condition assessment scores, based on a set of 77 photographic images, each scored for their condition by multiple experts, using a linear mixed model. Our approach shows strong promise for delivering the volumes of data required to develop continental-scale reference libraries of site condition assessments. Although developed from expert elicitation, the approach could also be used to harmonize the collation of existing condition datasets. The process we demonstrate can also facilitate online citizen scientists to make site condition assessments that can be cross-calibrated using contributed images.

Damage Assessment in Rural Environments Following Natural Disasters Using Multi-Sensor Remote Sensing Data

The damage caused by natural disasters in rural areas differs in nature extent, landscape, and structure, from the damage caused in urban environments. Previous and current studies have focused mainly on mapping damaged structures in urban areas after catastrophic events such as earthquakes or tsunamis. However, research focusing on the level of damage or its distribution in rural areas is lacking. This study presents a methodology for mapping, characterizing, and assessing the damage in rural environments following natural disasters, both in built-up and vegetation areas, by combining synthetic-aperture radar (SAR) and optical remote sensing data. As a case study, we applied the methodology to characterize the rural areas affected by the Sulawesi earthquake and the subsequent tsunami event in Indonesia that occurred on 28 September 2018. High-resolution COSMO-SkyMed images obtained pre- and post-event, alongside Sentinel-2 images, were used as inputs. This study's results emphasize that remote sensing data from rural areas must be treated differently from that of urban areas following a disaster. Additionally, the analysis must include the surrounding features, not only the damaged structures. Furthermore, the results highlight the applicability of the methodology for a variety of disaster events, as well as multiple hazards, and can be adapted using a combination of different optical and SAR sensors.

Changes in the Populations of Two Lymnaeidae and Their Infection by Fasciola hepatica and/or Calicophoron daubneyi over the Past 30 Years in Central France

Field investigations were carried out during three periods (from 1976 to 1997, in 2013-2014, and in 2020-2021) on 39 cattle-raising farms on acidic soils to track changes in the populations of two Lymnaeidae (Galba truncatula and Omphiscola glabra) and their infection with Fasciola hepatica and/or Calicophoron daubneyi. Compared to the survey between 1976 and 1997 on these farms, there was a significant decrease in the number of the two lymnaeid populations and the size of the G. truncatula populations in both 2013-2014 and 2020-2021. This decline was significantly faster in the last nine years than it was before 2013. The area of habitats colonized by G. truncatula showed no significant variation over the years, while that of habitats with O. glabra significantly decreased in the period covered by the three surveys. The prevalence of F. hepatica infection in snails significantly decreased over the years, while C. daubneyi infection increased over time in both lymnaeid species. These changes are due to the use of triclabendazole to treat fasciolosis in ruminants since the 1990s, and are probably a consequence of the successive heatwaves that have occurred since 2018 in the region.

Exploring Long-Term Anomalies in the Vegetation Cover of Peri-Urban Parks Using the Fisher-Shannon Method

The main goal of this study was to evaluate the potential of the Fisher-Shannon statistical method applied to the MODIS satellite time series to search for and explore any small multiyear trends and changes (herein also denoted as inner anomalies) in vegetation cover. For the purpose of our investigation, we focused on the vegetation cover of three peri-urban parks close to Rome and Naples (Italy). For each of these three areas, we analyzed the 2000-2020 time variation of four MODIS-based vegetation indices: evapotranspiration (ET), normalized difference vegetation index (NDVI), leaf area index (LAI), and enhanced vegetation index (EVI). These data sets are available in the Google Earth Engine (GEE) and were selected because they are related to the interactions between soil, water, atmosphere, and plants. To account for the great variability exhibited by the seasonal variations while identifying small multiyear trends and changes, we devised a procedure composed of two steps: (i) application of the Singular Spectrum Analysis (SSA) to each satellite-based time series to detect and remove the annual cycle including the seasonality and then (ii) analysis of the detrended signals using the Fisher-Shannon method, which combines the Shannon entropy and the Fisher Information Measure (FIM). Our results indicate that among all the three pilot test areas, Castel Volturno is characterized by the highest Shannon entropy and the lowest FIM that indicate a low level of order and organization of vegetation time series. This behaviour can be linked to the degradation phenomena induced by the parasite (Toumeyella parvicornis) that has affected dramatically the area in recent years. Our results were nicely confirmed by the comparison with in situ analyzed and independent data sets revealing the existence of subtle, small multiyear trends and changes in MODIS-based vegetation indices.

A case of infective endocarditis in an 8-year-old boy 3 months after transcatheter atrial septal defect closure using Figulla Flex II occluder

Infective endocarditis is a rare complication of atrial septal defect closure using transcatheter procedure. We report about infective endocarditis in an 8-year-old boy 3 months after transcatheter closure using a Figulla Flex II atrial septal defect occluder. Transesophageal echocardiography showed vegetation attached to the left atrium side of the device. Device removal and atrial septal defect closure were performed. The device was less endothelialized on the left than on the right atrium side. Therefore, insufficient endothelialization may cause infective endocarditis.