Seed priming can enhance and retain stress tolerance in ensuing generations by inducing epigenetic changes and trans-generational memory

Past trauma, better future: how stress memory shapes plant adaptation to drought

Can plants remember drought? Emerging evidence suggests that prior stress exposure leaves an epigenetic imprint, reprogramming plants for enhanced resilience. However, the stability and functional relevance of drought memory remain unresolved. This review synthesizes recent advances in epigenetic modifications, transcriptional reprogramming, and metabolic priming, critically assessing their roles in plant stress adaptation. DNA methylation dynamically reshapes chromatin landscapes, yet its transient nature questions its long-term inheritance. Histone modifications, particularly H3K9ac and H2Bub1, may encode stress signatures, enabling rapid transcriptional responses, whereas small RNAs fine-tune chromatin states to reinforce memory. Beyond epigenetics, physiological priming, including osmotic adjustments, antioxidant defenses, and hormonal crosstalk, introduces further complexity, yet its evolutionary advantage remains unclear. Root system plasticity may enhance drought resilience, but its metabolic trade-offs and epigenetic underpinnings are largely unexplored. A critical challenge is disentangling stable adaptive mechanisms from transient acclimatory shifts. We propose a framework for evaluating drought memory across temporal and generational scales and highlight the potential of precision genome editing to establish causality. By integrating multi-omics, gene editing, and field-based validation, this review aims to unlock the molecular blueprint of drought memory. Understanding these mechanisms is key to engineering climate-resilient crops, ensuring global food security in an era of increasing environmental uncertainty.

Drought stress memory in maize: understanding and harnessing the past for future resilience

Maize (Zea mays L.), a cornerstone of global food security, faces significant challenges due to drought stress, which disrupts its growth, development, and productivity. This review synthesizes advances in our understanding of drought stress memory, a mechanism that enables maize to "remember" prior drought exposure through transcriptional, epigenetic, and physiological pathways. Key regulators, including transcription factors (ZmEREB24 and ZmNF-YC12) and epigenetic modifications (DNA methylation and histone acetylation), orchestrate stress-responsive pathways that ensure rapid adaptation to recurrent drought events. Complementing these molecular mechanisms, physiological adaptations, such as optimized root and leaf architecture, enhanced water-use efficiency, and antioxidant defenses, further strengthen drought tolerance. Practical applications, including molecular priming techniques (e.g., osmopriming, hydropriming, nanoparticles) and advanced genetic tools (CRISPR/Cas9, GWAS), promise scalable solutions for breeding drought-resilient maize varieties. Despite this progress, challenges remain, including genotype-specific variability, scalability, and trade-offs between resilience and yield. This review provides a roadmap for integrating laboratory discoveries with field-level practices, bridging molecular and agronomic innovations to address climate variability and ensure sustainable maize production and global food security.

Chemical Seed Priming: Molecules and Mechanisms for Enhancing Plant Germination, Growth, and Stress Tolerance

Food security is one of the world's top challenges, specifically considering global issues like climate change. Seed priming is one strategy to improve crop production, typically via increased germination, yields, and/or stress tolerance. Hydropriming, or soaking seeds in water only, is the simplest form of seed priming. However, the addition of certain seed priming agents has resulted in a variety of modified strategies, including osmopriming, halopriming, hormonal priming, PGR priming, nutripriming, and others. Most current research has focused on hormonal and nutripriming. This review will focus on the specific compounds that have been used most often over the past 3 years and the physiological effects that they have had on crops. Over half of recent research has focused on four compounds: (1) salicylic acid, (2) zinc, (3) gibberellic acid, and (4) potassium nitrate. One of the most interesting characteristics of all chemical seed priming agents is that they are exposed only to seeds yet confer benefits throughout plant development. In some cases, such benefits have been passed to subsequent generations, suggesting an epigenetic effect, which is supported by observed changes in DNA methylation and histone modification. This review will summarize the current state of knowledge on molecular changes and physiological mechanisms associated with chemical seed priming agents and discuss avenues for future research.

Hallmarks of DNA Damage Response in Germination Across Model and Crop Species

DNA damage response (DDR) contributes to seed quality by guarding genome integrity in the delicate phases of pre- and post-germination. As a key determinant of stress tolerance and resilience, DDR has notable implications on the wider scale of the agroecosystems challenged by harsh climatic events. The present review focuses on the existing and documented links that interconnect DDR efficiency with an array of molecular hallmarks with biochemical, molecular, and physiological valence within the seed metabolic networks. The expression of genes encoding DDR sensors, transducers, mediators, and effectors is interpreted as a source of conserved hallmarks, along with markers of oxidative damage reflecting the seed's ability to germinate. Similarly, the accumulation patterns of proteins and metabolites that contribute to DNA stability are predictive of seed quality traits. While a list of candidates is presented from multiple models and crop species, their interaction with chromatin dynamics, cell cycle progression, and hormonal regulation provides further levels of analysis to investigate the seed stress response holistically. The identification of novel hallmarks of DDR in seeds constitutes a framework to prompt validation with different experimental systems, to refine the current models of pre-germinative metabolism, and to promote targeted approaches for seed quality evaluation.

Transgenerational epigenetic inheritance during plant evolution and breeding

Plants can program and reprogram their genomes to create genetic variation and epigenetic modifications, leading to phenotypic plasticity. Although consequences of genetic changes are comprehensible, the basis for transgenerational inheritance of epigenetic variation is elusive. This review addresses contributions of external (environmental) and internal (genomic) factors to the establishment and maintenance of epigenetic memory during plant evolution, crop domestication, and modern breeding. Dynamic and pervasive changes in DNA methylation and chromatin modifications provide a diverse repertoire of epigenetic variation potentially for transgenerational inheritance. Elucidating and harnessing epigenetic inheritance will help us develop innovative breeding strategies and biotechnological tools to improve crop yield and resilience in the face of environmental challenges. Beyond plants, epigenetic principles are shared across sexually reproducing organisms including humans with relevance to medicine and public health.

Seed priming using different agents can alleviate salt stress in kenaf (Hibiscus cannabinus L.) by activating antioxidant system and related genes expression

High salinity is an abiotic stress that limits crop production. Kenaf (Hibiscus cannabinus L.) is an annual fiber crop of the genus Hibiscus in the family Malvaceae with a certain tolerance to salt stress. Seed priming has been shown to ameliorate the adverse effects of salt stress on plants. However, the salt resistance mechanism in kenaf seeds treated with priming agents is not fully understood. In this study, we used four priming agents (H2O, PEG, ABA, KNO3) in different concentrations to treat kenaf seeds, and subjected the induced kenaf seedlings to salt stress (150 mM NaCl) to measure their agronomic traits and physiological and biochemical indicators. Our results indicate that the optimal priming concentration for PEG was 10%, 0.5 μM for ABA, and 0.5% for KNO3. Under these treatment concentrations, the germination rate of kenaf was significantly increased, and the fresh weight was also increased by 35.1%, 33.39%, 20.78% and 15.3%, respectively. Furthermore, the use of priming agents can alleviate the adverse effects of salt stress to a certain extent, significantly increase the agronomic indicators such as plant height, stem thickness, and leaf area of kenaf, enhance the ability of plants to perform photosynthesis, further improve the activity of antioxidant enzymes and increase the content of osmotic material, and reduce the accumulation of cell H2O2, O2 - and MDA. Meanwhile, seed priming can also enhance the expression of HcSOS1, HcNHX, HcHKT, HcCBL, HcCIPK, HcPD and HcNCED involved in the salt stress pathway. These results warrant that seed priming can reduce the adverse effects of salt stress on kenaf.

Supplementary Information

The online version contains supplementary material available at 10.1007/s12298-024-01521-x.

Nanopriming boost seed vigor: Deeper insights into the effect mechanism

Nanopriming, an advanced seed priming technology, is highly praised for its environmental friendliness, safety, and effectiveness in promoting sustainable agriculture. Studies have shown that nanopriming can enhance seed germination by stimulating the expression of aquaporins and increasing amylase production. By applying an appropriate concentration of nanoparticles, seeds can generate reactive oxygen species (ROS), enhance their antioxidant capacity, improve their response to oxidative stress, and enhance their tolerance to both biotic and abiotic stresses. This positive impact extends beyond the seed germination and seedling growth stages, persisting throughout the entire life cycle. This review offers a comprehensive overview of recent research progress in seed priming using various nanoparticles, while also addressing current challenges and future opportunities for sustainable agriculture.

Seed quality as a proxy of climate-ready orphan legumes: the need for a multidisciplinary and multi-actor vision

In developing countries, orphan legumes stand at the forefront in the struggle against climate change. Their high nutrient value is crucial in malnutrition and chronic diseases prevention. However, as the 'orphan' definition suggests, their seed systems are still underestimated and seed production is scanty. Seed priming is an effective, sustainable strategy to boost seed quality in orphan legumes for which up-to-date guidelines are required to guarantee reliable and reproducible results. How far are we along this path? What do we expect from seed priming? This brings to other relevant questions. What is the socio-economic relevance of orphan legumes in the Mediterranean Basin? How to potentiate a broader cultivation in specific regions? The case study of the BENEFIT-Med (Boosting technologies of orphan legumes towards resilient farming systems) project, developed by multidisciplinary research networks, envisions a roadmap for producing new knowledge and innovative technologies to improve seed productivity through priming, with the long-term objective of promoting sustainability and food security for/in the climate-sensitive regions. This review highlights the existing drawbacks that must be overcome before orphan legumes could reach the state of 'climate-ready crops'. Only by the integration of knowledge in seed biology, technology and agronomy, the barrier existing between research bench and local agricultural fields may be overcome, generating high-impact technical innovations for orphan legumes. We intend to provide a powerful message to encourage future research in line with the United Nations Agenda 2030 for Sustainable Development.

Redox Regulation by Priming Agents Toward a Sustainable Agriculture

Plants are sessile organisms that are often subjected to a multitude of environmental stresses, with the occurrence of these events being further intensified by global climate change. Crop species therefore require specific adaptations to tolerate climatic variability for sustainable food production. Plant stress results in excess accumulation of reactive oxygen species leading to oxidative stress and loss of cellular redox balance in the plant cells. Moreover, enhancement of cellular oxidation as well as oxidative signals has been recently recognized as crucial players in plant growth regulation under stress conditions. Multiple roles of redox regulation in crop production have been well documented, and major emphasis has focused on key redox-regulated proteins and non-protein molecules, such as NAD(P)H, glutathione, peroxiredoxins, glutaredoxins, ascorbate, thioredoxins and reduced ferredoxin. These have been widely implicated in the regulation of (epi)genetic factors modulating growth and health of crop plants, with an agricultural context. In this regard, priming with the employment of chemical and biological agents has emerged as a fascinating approach to improve plant tolerance against various abiotic and biotic stressors. Priming in plants is a physiological process, where prior exposure to specific stressors induces a state of heightened alertness, enabling a more rapid and effective defense response upon subsequent encounters with similar challenges. Priming is reported to play a crucial role in the modulation of cellular redox homeostasis, maximizing crop productivity under stress conditions and thus achieving yield security. By taking this into consideration, the present review is an up-to-date critical evaluation of promising plant priming technologies and their role in the regulation of redox components toward enhanced plant adaptations to extreme unfavorable environmental conditions. The challenges and opportunities of plant priming are discussed, with an aim of encouraging future research in this field toward effective application of priming in stress management in crops including horticultural species.

Effect of seed priming with auxin on ROS detoxification and carbohydrate metabolism and their relationship with germination and early seedling establishment in salt stressed maize

As crucial stages in the plant ontogeny, germination and seedling establishment under adverse conditions greatly determine staple crop growth and productivity. In the context of green technologies aiming to improve crop yield, seed priming is emerging as an effective approach to enhance seed vigor and germination performance under salt stress. In this study, we assess the efficiency of seed priming with indole-3-acetic acid (IAA) in mitigating the adverse effects of salt stress on maize (Zea mays L.) seedlings during germination and early seedling stages. In unprimed seeds, salt stress reduced germination indices, and seedling (both radicle and coleoptile) growth, together with decreased tissue hydration. However, seed priming using IAA significantly improved maize salt response, as reflected by the increased seed germination dynamics, early seedling establishment, and water status. Besides, seedlings from IAA-primed seeds showed a higher activity of α-amylase, resulting in increased sugar contents in roots and coleoptiles of salt-stressed plants. Further, IAA-seed priming stimulated the accumulation of endogenous IAA in salt-stressed seedlings, in concomitance with a significant effect on reactive oxygen species detoxification and lipid peroxidation prevention. Indeed, our data revealed increased antioxidant enzyme activities, differentially regulated in roots and coleoptiles, leading to increased activities of the antioxidant enzymes (SOD, CAT and GPX). In summary, data gained from this study further highlight the potential of IAA in modulating early interactions between multiple signaling pathways in the seed, endowing maize seedlings with enhanced potential and sustained tolerance to subsequent salt stress.

Redox priming could be an appropriate technique to minimize drought-induced adversities in quinoa

The exogenous use of the redox compound (H2O2) plays a significant role in abiotic stress tolerance. The present study investigated various H2O2 application methods (seed priming, foliar spray, and surface irrigation) with varying concentration levels (0 mM, 5 mM, 10 mM, 15 mM, 40 mM, 80 mM, and 160 mM) to evaluate the efficiency of supplying exogenous H2O2 to quinoa under water-deficit conditions. Drought stress reduced quinoa growth and yield by perturbing morphological traits, leading to the overproduction of reactive oxygen species and increased electrolyte leakage. Although all studied modes of H2O2 application improved quinoa performance, surface irrigation was found to be sensitive, causing oxidative damage in the present study. Seed priming showed a prominent increase in plant height due to profound emergence indexes compared to other modes under drought conditions. Strikingly, seed priming followed by foliar spray improved drought tolerance in quinoa and showed higher grain yield compared to surface irrigations. This increase in the yield performance of quinoa was attributed to improvements in total chlorophyll (37%), leaf relative water content (RWC; 20%), superoxide dismutase (SOD; 35%), peroxidase (97%), polyphenol oxidase (60%), and phenylalanine ammonia-lyase (58%) activities, and the accumulation of glycine betaine (96%), total soluble protein (TSP; 17%), proline contents (35%), and the highest reduction in leaf malondialdehyde contents (MDA; 36%) under drought stress. PCA analysis indicated that physio-biochemical traits (proline, SOD, TSP, total chlorophyll, MSI, and RWC) were strongly positively correlated with grain yield, and their contribution was much higher in redox priming than other application methods. In conclusion, exogenous H2O2 application, preferably redox priming, could be chosen to decrease drought-induced performance and yield losses in quinoa.

Moving forward to understand the alteration of physiological mechanism by seed priming with different halo-agents under salt stress

Soil salinity hampers the survival and productivity of crops. To minimize salt-associated damages in plant, better salt management practices in agriculture have become a prerequisite. Seed priming with different halo-agents is a technique, which improves the primed plant's endurance to tackle sodium. Salt tolerance is achieved in tolerant plants through fundamental physiological mechanisms- ion-exclusion and tissue tolerance, and salt-tolerant plants may (Na+ accumulators) or may not (Na+ excluders) allow sodium movement to leaves. While Na+ excluders depend on ion exclusion in roots, Na+ accumulators are proficient Na+ managers that can compartmentalize Na+ in leaves and use them beneficially as inexpensive osmoticum. Salt-sensitive plants are Na+ accumulators, but their inherent tissue tolerance ability and ion-exclusion process are insufficient for tolerance. Seed priming with different halo-agents aids in 'rewiring' of the salt tolerance mechanisms of plants. The resetting of the salt tolerance mechanism is not universal for every halo-agent and might vary with halo-agents. Here, we review the physiological mechanisms that different halo-agents target to confer enhanced salt tolerance in primed plants. Calcium and potassium-specific halo-agents trigger Na+ exclusion in roots, thus ensuring a low amount of Na+ in leaves. In contrast, Na+-specific priming agents favour processes for Na+ inclusion in leaves, improve plant tissue tolerance or vacuolar sequestration, and provide the greatest benefit to salt-sensitive and sodium accumulating plants. Overall, this review will help to understand the underlying mechanism behind plant's inherent nature towards salt management and its amelioration with different halo-agents, which helps to optimize crop stress performance.

Nano-enabled seed treatment: A new and sustainable approach to engineering climate-resilient crops

Under a changing climate, keeping the food supply steady for an ever-increasing population will require crop plants adapted to environmental fluctuations. Genetic engineering and genome-editing approaches have been used for developing climate-resilient crops. However, genetically modified crops have yet to be widely accepted, especially for small-scale farmers in low-income countries and some societies. Nano-priming (seed exposure to nanoparticles, NPs) has appeared as an alternative to the abovementioned techniques. This technique improves seed germination speed, promotes seedlings' vigor, and enhances plant tolerance to adverse conditions such as drought, salinity, temperature, and flooding, which may occur under extreme weather conditions. Moreover, nano-enabled seed treatment can increase the disease resistance of crops by boosting immunity, which will reduce the use of pesticides. This unsophisticated, farmer-available, cost-effective, and environment-friendly seed treatment approach may help crop plants fight climate change challenges. This review discusses the previous information about nano-enabled seed treatment for enhancing plant tolerance to abiotic stresses and increasing disease resistance. Current knowledge about the mechanisms underlying nanomaterial-seed interactions is discussed. To conclude, the review includes research questions to address before this technique reaches its full potential.

"Bet hedging" against climate change in developing and adult animals: roles for stochastic gene expression, phenotypic plasticity, epigenetic inheritance and adaptation

Animals from embryos to adults experiencing stress from climate change have numerous mechanisms available for enhancing their long-term survival. In this review we consider these options, and how viable they are in a world increasingly experiencing extreme weather associated with climate change. A deeply understood mechanism involves natural selection, leading to evolution of new adaptations that help cope with extreme and stochastic weather events associated with climate change. While potentially effective at staving off environmental challenges, such adaptations typically occur very slowly and incrementally over evolutionary time. Consequently, adaptation through natural selection is in most instances regarded as too slow to aid survival in rapidly changing environments, especially when considering the stochastic nature of extreme weather events associated with climate change. Alternative mechanisms operating in a much shorter time frame than adaptation involve the rapid creation of alternate phenotypes within a life cycle or a few generations. Stochastic gene expression creates multiple phenotypes from the same genotype even in the absence of environmental cues. In contrast, other mechanisms for phenotype change that are externally driven by environmental clues include well-understood developmental phenotypic plasticity (variation, flexibility), which can enable rapid, within-generation changes. Increasingly appreciated are epigenetic influences during development leading to rapid phenotypic changes that can also immediately be very widespread throughout a population, rather than confined to a few individuals as in the case of favorable gene mutations. Such epigenetically-induced phenotypic plasticity can arise rapidly in response to stressors within a generation or across a few generations and just as rapidly be "sunsetted" when the stressor dissipates, providing some capability to withstand environmental stressors emerging from climate change. Importantly, survival mechanisms resulting from adaptations and developmental phenotypic plasticity are not necessarily mutually exclusive, allowing for classic "bet hedging". Thus, the appearance of multiple phenotypes within a single population provides for a phenotype potentially optimal for some future environment. This enhances survival during stochastic extreme weather events associated with climate change. Finally, we end with recommendations for future physiological experiments, recommending in particular that experiments investigating phenotypic flexibility adopt more realistic protocols that reflect the stochastic nature of weather.

Trends in Seed Priming Research in the Past 30 Years Based on Bibliometric Analysis

Seed priming (SP) treatments are widely used in agriculture and restoration to improve seed germination and seedling vigor. Although there exists a considerable amount of scientific literature on SP, it has seldom undergone visual and quantitative analyses. To gain insights into the patterns observed in SP research over the last three decades, we conducted a bibliometric analysis using the Science Citation Index-Expanded (SCI-E) database, aiming to minimize the similarity score in plagiarism detection. This analysis offers a thorough examination of yearly publications, temporal patterns in keyword usage, the top-performing journals, authors, institutions, and countries within the field of SP. Our research findings suggest a steady annual increase of 10.59% in the volume of SP publications, accompanied by a significant upward trajectory in the average citations received per paper annually. According to the analysis of keywords, it was found that "priming" and "germination" emerged as the most frequently used terms in the field of SP research. Seed Science and Technology ranked first among the top journals, and Plant Physiology had greater influence in the field of SP in terms of number of citations. The majority of the top 10 productive institutions were situated in developing countries. In addition, these nations exhibited the highest volume of published works and citations. Our analysis revealed a shift in research focus within the field of SP over the past three decades, transitioning from agricultural science to encompass plant science and environmental science. With the growing recognition of SP's research across different disciplines, there exist abundant prospects for international and interdisciplinary partnerships, collaborative organizations, and progress in this field.

Combination of Iron and Zinc Enhanced the Root Cell Division, Mitotic Regularity and Nucleolar Activity of Hexaploid Triticale

Hexaploid triticale results from crosses between durum wheat and rye. Despite its high agronomic potential, triticale is mainly used for livestock feed. Triticale surpasses their parental species in adaptability and tolerance to abiotic and biotic stresses, being able to grow in acidic soils where a high amount of iron (Fe) and zinc (Zn) is typical. On the other hand, high amounts of these essential trace elements can be cytotoxic to bread wheat. The cytotoxicity induced by seed priming with a high concentration of Fe and Zn impaired root cell division and induced nucleolar changes in bread wheat. Such cytogenetic approaches were expedited and successfully determined cytotoxic and suited micronutrient dosages for wheat nutripriming. With this study, we intended to analyse the hexaploid triticale cv 'Douro' root mitotic cell cycle and nucleolar activity after seed priming performed with aqueous solutions of iron (Fe) and/or zinc (Zn), containing a concentration that was previously considered cytotoxic, to bread wheat and to infer the higher tolerance of triticale to these treatments. The overall cytogenetic data allowed us to conclude that the Fe + Zn treatment enhanced the root mitotic index (MI), mitosis regularity and nucleolar activity of 'Douro' relative to the control and the individual treatments performed with Fe or Zn alone. The Fe + Zn treatment might suit triticale biofortification through seed priming.