1
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Feng L, Teng F, Li N, Zhang JC, Zhang BJ, Tsai SN, Yue XL, Gu LF, Meng GH, Deng TQ, Tong SW, Wang CM, Li Y, Shi W, Zeng YL, Jiang YM, Yu W, Ngai SM, An LZ, Lam HM, He JX. A reference-grade genome of the xerophyte Ammopiptanthus mongolicus sheds light on its evolution history in legumes and drought-tolerance mechanisms. PLANT COMMUNICATIONS 2024:100891. [PMID: 38561965 DOI: 10.1016/j.xplc.2024.100891] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/02/2023] [Revised: 02/26/2024] [Accepted: 03/29/2024] [Indexed: 04/04/2024]
Abstract
Plants that grow in extreme environments represent unique sources of stress-resistance genes and mechanisms. Ammopiptanthus mongolicus (Leguminosae) is a xerophytic evergreen broadleaf shrub native to semi-arid and desert regions; however, its drought-tolerance mechanisms remain poorly understood. Here, we report the assembly of a reference-grade genome for A. mongolicus, describe its evolutionary history within the legume family, and examine its drought-tolerance mechanisms. The assembled genome is 843.07 Mb in length, with 98.7% of the sequences successfully anchored to the nine chromosomes of A. mongolicus. The genome is predicted to contain 47 611 protein-coding genes, and 70.71% of the genome is composed of repetitive sequences; these are dominated by transposable elements, particularly long-terminal-repeat retrotransposons. Evolutionary analyses revealed two whole-genome duplication (WGD) events at 130 and 58 million years ago (mya) that are shared by the genus Ammopiptanthus and other legumes, but no species-specific WGDs were found within this genus. Ancestral genome reconstruction revealed that the A. mongolicus genome has undergone fewer rearrangements than other genomes in the legume family, confirming its status as a "relict plant". Transcriptomic analyses demonstrated that genes involved in cuticular wax biosynthesis and transport are highly expressed, both under normal conditions and in response to polyethylene glycol-induced dehydration. Significant induction of genes related to ethylene biosynthesis and signaling was also observed in leaves under dehydration stress, suggesting that enhanced ethylene response and formation of thick waxy cuticles are two major mechanisms of drought tolerance in A. mongolicus. Ectopic expression of AmERF2, an ethylene response factor unique to A. mongolicus, can markedly increase the drought tolerance of transgenic Arabidopsis thaliana plants, demonstrating the potential for application of A. mongolicus genes in crop improvement.
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Affiliation(s)
- Lei Feng
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Sha Tin, New Territories, Hong Kong, China; Guangdong Provincial Key Laboratory of Biotechnology for Plant Development, School of Life Sciences, South China Normal University, Guangzhou 510631, China
| | - Fei Teng
- BGI-Shenzhen Tech Co., Ltd., Beishan Industrial Zone, Yantian District, Shenzhen 518083, China
| | - Na Li
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Sha Tin, New Territories, Hong Kong, China
| | - Jia-Cheng Zhang
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Sha Tin, New Territories, Hong Kong, China
| | - Bian-Jiang Zhang
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Sha Tin, New Territories, Hong Kong, China
| | - Sau-Na Tsai
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Sha Tin, New Territories, Hong Kong, China
| | - Xiu-Le Yue
- School of Life Sciences and Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, Lanzhou University, Lanzhou 730030, China
| | - Li-Fei Gu
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Sha Tin, New Territories, Hong Kong, China
| | - Guang-Hua Meng
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Sha Tin, New Territories, Hong Kong, China
| | - Tian-Quan Deng
- BGI-Shenzhen Tech Co., Ltd., Beishan Industrial Zone, Yantian District, Shenzhen 518083, China
| | - Suk-Wah Tong
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Sha Tin, New Territories, Hong Kong, China
| | - Chun-Ming Wang
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Sha Tin, New Territories, Hong Kong, China
| | - Yan Li
- State Key Laboratory of Subtropical Silviculture, Zhejiang Agriculture and Forestry University, Hangzhou 311300, China
| | - Wei Shi
- BGI-Shenzhen Tech Co., Ltd., Beishan Industrial Zone, Yantian District, Shenzhen 518083, China
| | - Yong-Lun Zeng
- State Key Laboratory of Plant Diversity and Specialty Crops, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
| | - Yue-Ming Jiang
- Guangdong Provincial Key Laboratory of Applied Botany & Key Laboratory of South China Agricultural Plant Molecular Analysis and Genetic Improvement, South China Botanical Garden, Chinese Academy of Sciences, Guangzhou 510650, China
| | - Weichang Yu
- College of Life Sciences and Oceanography, Shenzhen University, Shenzhen 518060, China
| | - Sai-Ming Ngai
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Sha Tin, New Territories, Hong Kong, China
| | - Li-Zhe An
- School of Life Sciences and Ministry of Education Key Laboratory of Cell Activities and Stress Adaptations, Lanzhou University, Lanzhou 730030, China; State Key Laboratory of Efficient Production of Forest Resources, Beijing Forestry University, Beijing 100083, China.
| | - Hon-Ming Lam
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Sha Tin, New Territories, Hong Kong, China.
| | - Jun-Xian He
- School of Life Sciences and State Key Laboratory of Agrobiotechnology, The Chinese University of Hong Kong, Sha Tin, New Territories, Hong Kong, China.
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Yoshida T, Fernie AR. Hormonal regulation of plant primary metabolism under drought. JOURNAL OF EXPERIMENTAL BOTANY 2024; 75:1714-1725. [PMID: 37712613 DOI: 10.1093/jxb/erad358] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 06/28/2023] [Accepted: 09/13/2023] [Indexed: 09/16/2023]
Abstract
Phytohormones are essential signalling molecules globally regulating many processes of plants, including their growth, development, and stress responses. The promotion of growth and the enhancement of stress resistance have to be balanced, especially under adverse conditions such as drought stress, because of limited resources. Plants cope with drought stress via various strategies, including the transcriptional regulation of stress-responsive genes and the adjustment of metabolism, and phytohormones play roles in these processes. Although abscisic acid (ABA) is an important signal under drought, less attention has been paid to other phytohormones. In this review, we summarize progress in the understanding of phytohormone-regulated primary metabolism under water-limited conditions, especially in Arabidopsis thaliana, and highlight recent findings concerning the amino acids associated with ABA metabolism and signalling. We also discuss how phytohormones function antagonistically and synergistically in order to balance growth and stress responses.
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Affiliation(s)
- Takuya Yoshida
- Lehrstuhl für Botanik, Technische Universität München, Emil-Ramann-Str. 4, 85354 Freising, Germany
| | - Alisdair R Fernie
- Max-Planck-Institut für Molekulare Pflanzenphysiologie, 14476 Potsdam-Golm, Germany
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Sato H, Mizoi J, Shinozaki K, Yamaguchi-Shinozaki K. Complex plant responses to drought and heat stress under climate change. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2024; 117:1873-1892. [PMID: 38168757 DOI: 10.1111/tpj.16612] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/28/2023] [Revised: 12/10/2023] [Accepted: 12/15/2023] [Indexed: 01/05/2024]
Abstract
Global climate change is predicted to result in increased yield losses of agricultural crops caused by environmental conditions. In particular, heat and drought stress are major factors that negatively affect plant development and reproduction, and previous studies have revealed how these stresses induce plant responses at physiological and molecular levels. Here, we provide a comprehensive overview of current knowledge concerning how drought, heat, and combinations of these stress conditions affect the status of plants, including crops, by affecting factors such as stomatal conductance, photosynthetic activity, cellular oxidative conditions, metabolomic profiles, and molecular signaling mechanisms. We further discuss stress-responsive regulatory factors such as transcription factors and signaling factors, which play critical roles in adaptation to both drought and heat stress conditions and potentially function as 'hubs' in drought and/or heat stress responses. Additionally, we present recent findings based on forward genetic approaches that reveal natural variations in agricultural crops that play critical roles in agricultural traits under drought and/or heat conditions. Finally, we provide an overview of the application of decades of study results to actual agricultural fields as a strategy to increase drought and/or heat stress tolerance. This review summarizes our current understanding of plant responses to drought, heat, and combinations of these stress conditions.
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Affiliation(s)
- Hikaru Sato
- Department of Integrated Biosciences, Graduate School of Frontier Sciences, The University of Tokyo, 5-1-5 Kashiwanoha, Kashiwa, Chiba, 277-8562, Japan
| | - Junya Mizoi
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan
| | - Kazuo Shinozaki
- RIKEN Center for Sustainable Resource Science, 1-7-22 Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
- Institute for Advanced Research, Nagoya University, Furo-cho, Chikusa-ku, Nagoya, Aichi, 464-8601, Japan
| | - Kazuko Yamaguchi-Shinozaki
- Department of Applied Biological Chemistry, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 1-1-1 Yayoi, Bunkyo-ku, Tokyo, 113-8657, Japan
- Research Institute for Agricultural and Life Sciences, Tokyo University of Agriculture, 1-1-1 Sakuraoka, Setagara-ku, Tokyo, 156-8502, Japan
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Dey N, Bhattacharjee S. Comparative transcriptomic data confirm the findings of dehydration stress-induced redox biology of indigenous aromatic rice cultivars. 3 Biotech 2023; 13:392. [PMID: 37953831 PMCID: PMC10635969 DOI: 10.1007/s13205-023-03829-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Accepted: 10/19/2023] [Indexed: 11/14/2023] Open
Abstract
The present work compares the transcriptome data sets of post-imbibitional dehydration stress-raised seedlings of two contrasting indigenous aromatic rice cultivars (Oryza sativa L., Cultivars Jamainadu and Badshabhog) for unfolding genetic regulation of dehydration stress. The result of RNA-seq analysis in Illumina platform in general revealed significant cultivar-specific expression of genes under dehydration stress that substantiate the data of redox metabolic fingerprints (assessed in terms of differential efficacy of ascorbate-glutathione pathway, ROS-antioxidant interaction dynamics and sensitive biomarkers of oxidative stress). Both the cultivars showed a diverse global transcriptomic response under water-deficit condition. Transcripts selected for heatmap generation with proper annotation revealed genes that are significantly expressed and mainly involved in redox functions, signaling, membrane trafficking, replication, protein synthesis, etc. Gene ontology (GO) analysis proposed that dehydration stress in the drought-tolerant cultivar Badshabhog was attributable to the enhanced expression of genes associated with carbon dioxide-concentrating mechanism, peroxysomal biogenesis, protein modification, protein synthesis, mitochondrial electron transport chain functioning, intercellular protein transport, histone demethylation associated with developmental process, regulation of apoptosis, etc. The redox genes that got significantly over-expressed in the IARC Badshabhog vis-à-vis Jamainadu include l-ascorbate oxidase/peroxidase, monothiol glutaredoxin-S1, thioredoxin-like protein AAED1 (chloroplastic), thioredoxin-like protein CXXS1, NADH-dehydrogenase (ubiquinone)-1-beta subcomplex subunit 3-B, NADH-dehydrogenase subunit 6 and K, lipoxygenase 6 isoform-XI, etc. Overall, the results of the RNA-seq analysis led to the identification of cultivar-specific genes, with the cultivar Badshabhog exhibiting significantly greater molecular reprogramming for redox regulation and signaling necessary for combating dehydration stress. Supplementary Information The online version contains supplementary material available at 10.1007/s13205-023-03829-z.
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Affiliation(s)
- Nivedita Dey
- Plant Physiology and Biochemistry Research Laboratory, UGC Centre for Advanced Study, Department of Botany, The University of Burdwan, Burdwan, West Bengal 713104 India
| | - Soumen Bhattacharjee
- Plant Physiology and Biochemistry Research Laboratory, UGC Centre for Advanced Study, Department of Botany, The University of Burdwan, Burdwan, West Bengal 713104 India
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Okemo PA, Njaci I, Kim YM, McClure RS, Peterson MJ, Beliaev AS, Hixson KK, Mundree S, Williams B. Tripogon loliiformis tolerates rapid desiccation after metabolic and transcriptional priming during initial drying. Sci Rep 2023; 13:20613. [PMID: 37996547 PMCID: PMC10667271 DOI: 10.1038/s41598-023-47456-3] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/22/2023] [Accepted: 11/14/2023] [Indexed: 11/25/2023] Open
Abstract
Crop plants and undomesticated resilient species employ different strategies to regulate their energy resources and growth. Most crop species are sensitive to stress and prioritise rapid growth to maximise yield or biomass production. In contrast, resilient plants grow slowly, are small, and allocate their resources for survival in challenging environments. One small group of plants, termed resurrection plants, survive desiccation of their vegetative tissue and regain full metabolic activity upon watering. However, the precise molecular mechanisms underlying this extreme tolerance remain unknown. In this study, we employed a transcriptomics and metabolomics approach, to investigate the mechanisms of desiccation tolerance in Tripogon loliiformis, a modified desiccation-tolerant plant, that survives gradual but not rapid drying. We show that T. loliiformis can survive rapid desiccation if it is gradually dried to 60% relative water content (RWC). Furthermore, the gene expression data showed that T. loliiformis is genetically predisposed for desiccation in the hydrated state, as evidenced by the accumulation of MYB, NAC, bZIP, WRKY transcription factors along with the phytohormones, abscisic acid, salicylic acid, amino acids (e.g., proline) and TCA cycle sugars during initial drying. Through network analysis of co-expressed genes, we observed differential responses to desiccation between T. loliiformis shoots and roots. Dehydrating shoots displayed global transcriptional changes across broad functional categories, although no enrichment was observed during drying. In contrast, dehydrating roots showed distinct network changes with the most significant differences occurring at 40% RWC. The cumulative effects of the early stress responses may indicate the minimum requirements of desiccation tolerance and enable T. loliiformis to survive rapid drying. These findings potentially hold promise for identifying biotechnological solutions aimed at developing drought-tolerant crops without growth and yield penalties.
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Affiliation(s)
- Pauline A Okemo
- School of Biology and Environmental Science, Queensland University of Technology, Brisbane, QLD, Australia
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology, Brisbane, QLD, Australia
- Queensland Alliance for Agriculture and Food Innovation, University of Queensland, Brisbane, QLD, Australia
| | - Isaac Njaci
- School of Biology and Environmental Science, Queensland University of Technology, Brisbane, QLD, Australia
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology, Brisbane, QLD, Australia
| | - Young-Mo Kim
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA
| | - Ryan S McClure
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA
| | | | - Alexander S Beliaev
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology, Brisbane, QLD, Australia
- Physical and Chemical Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA
| | - Kim K Hixson
- Earth and Biological Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA
- Physical and Chemical Sciences Directorate, Pacific Northwest National Laboratory, Richland, WA, USA
| | - Sagadevan Mundree
- School of Biology and Environmental Science, Queensland University of Technology, Brisbane, QLD, Australia
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology, Brisbane, QLD, Australia
| | - Brett Williams
- School of Biology and Environmental Science, Queensland University of Technology, Brisbane, QLD, Australia.
- Centre for Agriculture and the Bioeconomy, Queensland University of Technology, Brisbane, QLD, Australia.
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Yin J, Ren W, Fry EL, Sun S, Han H, Guo F. DNA methylation mediates overgrazing-induced clonal transgenerational plasticity. THE SCIENCE OF THE TOTAL ENVIRONMENT 2023; 897:165338. [PMID: 37414175 DOI: 10.1016/j.scitotenv.2023.165338] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/23/2023] [Revised: 06/22/2023] [Accepted: 07/03/2023] [Indexed: 07/08/2023]
Abstract
Overgrazing generally induces dwarfism in grassland plants, and these phenotypic traits could be transmitted to clonal offspring even when overgrazing is excluded. However, the dwarfism-transmitted mechanism remains largely unknown, despite generally thought to be enabled by epigenetic modification. To clarify the potential role of DNA methylation on clonal transgenerational effects, we conducted a greenhouse experiment with Leymus chinensis clonal offspring from different cattle/sheep overgrazing histories via the demethylating agent 5-azacytidine. The results showed that clonal offspring from overgrazed (by cattle or sheep) parents were dwarfed and the auxin content of leaves significantly decreased compared to offspring from no-grazed parents'. The 5-azaC application generally increased the auxin content and promoted the growth of overgrazed offspring while inhibited no-grazed offspring growth. Meanwhile, there were similar trends in the expression level of genes related to auxin-responsive target genes (ARF7, ARF19), and signal transduction gene (AZF2). These results suggest that DNA methylation leads to overgrazing-induced plant transgenerational dwarfism via inhibiting auxin signal pathway.
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Affiliation(s)
- Jingjing Yin
- School of Ecology and Environment, Inner Mongolia University, Hohhot, China
| | - Weibo Ren
- School of Ecology and Environment, Inner Mongolia University, Hohhot, China; Key Laboratory of Forage Breeding and Seed Production of Inner Mongolia, Inner Mongolia M-Grass Ecology and Environment (Group) Co., Ltd., Hohhot 010016, China.
| | - Ellen L Fry
- Department of Biology, Edge Hill University, Ormskirk, Lancashire L39 4QP, UK
| | - Siyuan Sun
- School of Ecology and Environment, Inner Mongolia University, Hohhot, China
| | - Huijie Han
- School of Ecology and Environment, Inner Mongolia University, Hohhot, China
| | - Fenghui Guo
- Industrial Crop Institute, Shanxi Agricultural University, Taiyuan, China
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Wang N, Qi F, Wang F, Lin Y, Xiaoyang C, Peng Z, Zhang B, Qi X, Deyholos MK, Zhang J. Evaluation of Differentially Expressed Genes in Leaves vs. Roots Subjected to Drought Stress in Flax ( Linum usitatissimum L.). Int J Mol Sci 2023; 24:12019. [PMID: 37569394 PMCID: PMC10419004 DOI: 10.3390/ijms241512019] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/02/2023] [Revised: 07/21/2023] [Accepted: 07/25/2023] [Indexed: 08/13/2023] Open
Abstract
Drought stress is a common environmental challenge that plants face, severely constraining plant growth and reducing crop yield and quality. Several studies have highlighted distinct responses between monocotyledonous and dicotyledonous plants. However, the mechanisms underlying flax tolerance to abiotic stress, such as drought, remain unclear. In this study, we investigated the morphological, physiological, and biochemical characteristics and the genome-wide gene expression of oil flax and fiber flax in response to drought stress. The results revealed that drought stress caused significant wilting of flax leaves. Within the first 24 h of stress, various physiological and biochemical characteristics exhibited rapid responses. These included fresh weight, relative water content (RWC), proline, soluble protein, soluble sugar, superoxide dismutase (SOD), peroxidase (POD), and catalase (CAT) in the leaves or roots of flax. Additionally, drought stress led to a significant rise in lignin content in fiber flax. In addition, the transcriptome analysis demonstrated genome-wide variations in gene expression induced by drought stress. Specifically, genes associated with photosynthesis, proline biosynthesis, and phytohormone metabolism exhibited significant differences in expression levels under stress conditions in flax. These findings highlight the rapid response of flax to drought stress within a short-term period. Our experiment also revealed that, although there were variations in the levels of small compound content or gene expression between Longya10 and Fany under drought stress, most stress-resistance responses were similar. Furthermore, the results provide additional evidence supporting the existence of mechanisms underlying the response to drought stress in plants.
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Affiliation(s)
- Ningning Wang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130000, China; (N.W.); (F.Q.); (F.W.); (Y.L.); (C.X.); (B.Z.)
| | - Fan Qi
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130000, China; (N.W.); (F.Q.); (F.W.); (Y.L.); (C.X.); (B.Z.)
| | - Fu Wang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130000, China; (N.W.); (F.Q.); (F.W.); (Y.L.); (C.X.); (B.Z.)
| | - Yujie Lin
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130000, China; (N.W.); (F.Q.); (F.W.); (Y.L.); (C.X.); (B.Z.)
| | - Chunxiao Xiaoyang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130000, China; (N.W.); (F.Q.); (F.W.); (Y.L.); (C.X.); (B.Z.)
| | - Zhanwu Peng
- Information Center, Jilin Agricultural University, Changchun 130000, China;
| | - Bi Zhang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130000, China; (N.W.); (F.Q.); (F.W.); (Y.L.); (C.X.); (B.Z.)
| | - Xin Qi
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130000, China; (N.W.); (F.Q.); (F.W.); (Y.L.); (C.X.); (B.Z.)
| | - Michael K. Deyholos
- Department of Biology, University of British Columbia Okanagan, Kelowna, BC V1V 1V7, Canada;
| | - Jian Zhang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130000, China; (N.W.); (F.Q.); (F.W.); (Y.L.); (C.X.); (B.Z.)
- Department of Biology, University of British Columbia Okanagan, Kelowna, BC V1V 1V7, Canada;
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Trovato M, Brini F, Mseddi K, Rhizopoulou S, Jones MA. A holistic and sustainable approach linked to drought tolerance of Mediterranean crops. FRONTIERS IN PLANT SCIENCE 2023; 14:1167376. [PMID: 37396645 PMCID: PMC10308116 DOI: 10.3389/fpls.2023.1167376] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 02/16/2023] [Accepted: 06/02/2023] [Indexed: 07/04/2023]
Abstract
The rapid increase in average temperatures and the progressive reduction in rainfalls caused by climate change is reducing crop yields worldwide, particularly in regions with hot and semi-arid climates such as the Mediterranean area. In natural conditions, plants respond to environmental drought stress with diverse morphological, physiological, and biochemical adaptations in an attempt to escape, avoid, or tolerate drought stress. Among these adaptations to stress, the accumulation of abscisic acid (ABA) is of pivotal importance. Many biotechnological approaches to improve stress tolerance by increasing the exogenous or endogenous content of ABA have proved to be effective. In most cases the resultant drought tolerance is associated with low productivity incompatible with the requirements of modern agriculture. The on-going climate crisis has provoked the search for strategies to increase crop yield under warmer conditions. Several biotechnological strategies, such as the genetic improvement of crops or the generation of transgenic plants for genes involved in drought tolerance, have been attempted with unsatisfactory results suggesting the need for new approaches. Among these, the genetic modification of transcription factors or regulators of signaling cascades provide a promising alternative. To reconcile drought tolerance with crop yield, we propose mutagenesis of genes controlling key signaling components downstream of ABA accumulation in local landraces to modulate responses. We also discuss the advantages of tackling this challenge with a holistic approach involving different knowledge and perspectives, and the problem of distributing the selected lines at subsidized prices to guarantee their use by small family farms.
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Affiliation(s)
- Maurizio Trovato
- Department of Biology and Biotechnologies, Sapienza University of Rome, Rome, Italy
| | - Faiçal Brini
- Biotechnology and Plant Improvement Laboratory, Centre of Biotechnology of Sfax (CBS), Sfax, Tunisia
| | - Khalil Mseddi
- Faculty of Sciences of Sfax, University of Sfax, Sfax, Tunisia
| | - Sophia Rhizopoulou
- Department of Biology, National and Kapodistrian University of Athens, Athens, Greece
| | - Matthew Alan Jones
- School of Molecular Biosciences, University of Glasgow, Glasgow, United Kingdom
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9
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Muhammad S, Xu X, Zhou W, Wu L. Alternative splicing: An efficient regulatory approach towards plant developmental plasticity. WILEY INTERDISCIPLINARY REVIEWS. RNA 2023; 14:e1758. [PMID: 35983878 DOI: 10.1002/wrna.1758] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/24/2022] [Revised: 06/28/2022] [Accepted: 07/19/2022] [Indexed: 05/13/2023]
Abstract
Alternative splicing (AS) is a gene regulatory mechanism that plants adapt to modulate gene expression (GE) in multiple ways. AS generates alternative isoforms of the same gene following various development and environmental stimuli, increasing transcriptome plasticity and proteome complexity. AS controls the expression levels of certain genes and regulates GE networks that shape plant adaptations through nonsense-mediated decay (NMD). This review intends to discuss AS modulation, from interaction with noncoding RNAs to the established roles of splicing factors (SFs) in response to endogenous and exogenous cues. We aim to gather such studies that highlight the magnitude and impact of AS, which are not always clear from individual articles, when AS is increasing in individual genes and at a global level. This work also anticipates making plant researchers know that AS is likely to occur in their investigations and that dynamic changes in AS and their effects must be frequently considered. We also review our understanding of AS-mediated posttranscriptional modulation of plant stress tolerance and discuss its potential application in crop improvement in the future. This article is categorized under: RNA Processing > Splicing Regulation/Alternative Splicing RNA Processing > Splicing Mechanisms RNA-Based Catalysis > RNA Catalysis in Splicing and Translation.
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Affiliation(s)
- Sajid Muhammad
- Hainan Yazhou Bay Seed Laboratory, Hainan Institute of Zhejiang University, Sanya, Hainan, China
- State Key Laboratory of Rice Biology, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang, China
| | - Xiaoli Xu
- Zhejiang Academy of Agricultural Sciences, Hangzhou, China
| | - Weijun Zhou
- State Key Laboratory of Rice Biology, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang, China
| | - Liang Wu
- Hainan Yazhou Bay Seed Laboratory, Hainan Institute of Zhejiang University, Sanya, Hainan, China
- State Key Laboratory of Rice Biology, College of Agriculture and Biotechnology, Zhejiang University, Hangzhou, Zhejiang, China
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Wurms KV, Reglinski T, Buissink P, Ah Chee A, Fehlmann C, McDonald S, Cooney J, Jensen D, Hedderley D, McKenzie C, Rikkerink EHA. Effects of Drought and Flooding on Phytohormones and Abscisic Acid Gene Expression in Kiwifruit. Int J Mol Sci 2023; 24:ijms24087580. [PMID: 37108744 PMCID: PMC10143653 DOI: 10.3390/ijms24087580] [Citation(s) in RCA: 3] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/31/2023] [Revised: 04/14/2023] [Accepted: 04/17/2023] [Indexed: 04/29/2023] Open
Abstract
Environmental extremes, such as drought and flooding, are becoming more common with global warming, resulting in significant crop losses. Understanding the mechanisms underlying the plant water stress response, regulated by the abscisic acid (ABA) pathway, is crucial to building resilience to climate change. Potted kiwifruit plants (two cultivars) were exposed to contrasting watering regimes (water logging and no water). Root and leaf tissues were sampled during the experiments to measure phytohormone levels and expression of ABA pathway genes. ABA increased significantly under drought conditions compared with the control and waterlogged plants. ABA-related gene responses were significantly greater in roots than leaves. ABA responsive genes, DREB2 and WRKY40, showed the greatest upregulation in roots with flooding, and the ABA biosynthesis gene, NCED3, with drought. Two ABA-catabolic genes, CYP707A i and ii were able to differentiate the water stress responses, with upregulation in flooding and downregulation in drought. This study has identified molecular markers and shown that water stress extremes induced strong phytohormone/ABA gene responses in the roots, which are the key site of water stress perception, supporting the theory kiwifruit plants regulate ABA to combat water stress.
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Affiliation(s)
- Kirstin V Wurms
- Ruakura Research Centre, The New Zealand Institute for Plant and Food Research Limited, Hamilton 3214, New Zealand
| | - Tony Reglinski
- Ruakura Research Centre, The New Zealand Institute for Plant and Food Research Limited, Hamilton 3214, New Zealand
| | - Poppy Buissink
- Ruakura Research Centre, The New Zealand Institute for Plant and Food Research Limited, Hamilton 3214, New Zealand
| | - Annette Ah Chee
- Ruakura Research Centre, The New Zealand Institute for Plant and Food Research Limited, Hamilton 3214, New Zealand
| | - Christina Fehlmann
- Ruakura Research Centre, The New Zealand Institute for Plant and Food Research Limited, Hamilton 3214, New Zealand
| | - Stella McDonald
- Mount Albert Research Centre, The New Zealand Institute for Plant and Food Research Limited, Auckland 1025, New Zealand
| | - Janine Cooney
- Ruakura Research Centre, The New Zealand Institute for Plant and Food Research Limited, Hamilton 3214, New Zealand
| | - Dwayne Jensen
- Ruakura Research Centre, The New Zealand Institute for Plant and Food Research Limited, Hamilton 3214, New Zealand
| | - Duncan Hedderley
- Palmerston North Research Centre, The New Zealand Institute for Plant and Food Research Limited, Palmerston North 4410, New Zealand
| | - Catherine McKenzie
- Te Puke Research Centre, The New Zealand Institute for Plant and Food Research Limited, Te Puke 3182, New Zealand
| | - Erik H A Rikkerink
- Mount Albert Research Centre, The New Zealand Institute for Plant and Food Research Limited, Auckland 1025, New Zealand
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11
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Singh A, Roychoudhury A. Abscisic acid in plants under abiotic stress: crosstalk with major phytohormones. PLANT CELL REPORTS 2023; 42:961-974. [PMID: 37079058 DOI: 10.1007/s00299-023-03013-w] [Citation(s) in RCA: 7] [Impact Index Per Article: 7.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/04/2023] [Accepted: 03/28/2023] [Indexed: 05/03/2023]
Abstract
KEY MESSAGE Extensive crosstalk exists among ABA and different phytohormones that modulate plant tolerance against different abiotic stress. Being sessile, plants are exposed to a wide range of abiotic stress (drought, heat, cold, salinity and metal toxicity) that exert unwarranted threat to plant life and drastically affect growth, development, metabolism, and yield of crops. To cope with such harsh conditions, plants have developed a wide range of protective phytohormones of which abscisic acid plays a pivotal role. It controls various physiological processes of plants such as leaf senescence, seed dormancy, stomatal closure, fruit ripening, and other stress-related functions. Under challenging situations, physiological responses of ABA manifested in the form of morphological, cytological, and anatomical alterations arise as a result of synergistic or antagonistic interaction with multiple phytohormones. This review provides new insight into ABA homeostasis and its perception and signaling crosstalk with other phytohormones at both molecular and physiological level under critical conditions including drought, salinity, heavy metal toxicity, and extreme temperature. The review also reveals the role of ABA in the regulation of various physiological processes via its positive or negative crosstalk with phytohormones, viz., gibberellin, melatonin, cytokinin, auxin, salicylic acid, jasmonic acid, ethylene, brassinosteroids, and strigolactone in response to alteration of environmental conditions. This review forms a basis for designing of plants that will have an enhanced tolerance capability against different abiotic stress.
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Affiliation(s)
- Ankur Singh
- Department of Biotechnology, St. Xavier's College (Autonomous), 30 Mother Teresa Sarani, Kolkata, 700016, West Bengal, India
| | - Aryadeep Roychoudhury
- Discipline of Life Sciences, School of Sciences, Indira Gandhi National Open University, Maidan Garhi, New Delhi, 110068, India.
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12
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Sacco Botto C, Matić S, Moine A, Chitarra W, Nerva L, D’Errico C, Pagliarani C, Noris E. Tomato Yellow Leaf Curl Sardinia Virus Increases Drought Tolerance of Tomato. Int J Mol Sci 2023; 24:ijms24032893. [PMID: 36769211 PMCID: PMC9918285 DOI: 10.3390/ijms24032893] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/30/2022] [Revised: 01/25/2023] [Accepted: 01/31/2023] [Indexed: 02/05/2023] Open
Abstract
Drought stress is one of the major physiological stress factors that adversely affect agricultural production, altering critical features of plant growth and metabolism. Plants can be subjected simultaneously to abiotic and biotic stresses, such as drought and viral infections. Rewarding effects provided by viruses on the ability of host plants to endure abiotic stresses have been reported. Recently, begomoviruses causing the tomato yellow leaf curl disease in tomatoes were shown to increase heat and drought tolerance. However, biological bases underlying the induced drought tolerance need further elucidation, particularly in the case of tomato plants. In this work, tomato plants infected by the tomato yellow leaf curl Sardinia virus (TYLCSV) were subjected to severe drought stress, followed by recovery. Morphological traits, water potential, and hormone contents were measured in leaves together with molecular analysis of stress-responsive and hormone metabolism-related genes. Wilting symptoms appeared three days later in TYLCSV-infected plants compared to healthy controls and post-rehydration recovery was faster (2 vs. 4 days, respectively). Our study contributes new insights into the impact of viruses on the plant's adaptability to environmental stresses. On a broader perspective, such information could have important practical implications for managing the effects of climate change on agroecosystems.
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Affiliation(s)
- Camilla Sacco Botto
- Institute for Sustainable Plant Protection, National Research Council, Strada delle Cacce 73, 10135 Turin, Italy
- Department of Agriculture, Forestry and Food Science DISAFA, Turin University, Largo Braccini 2, 10095 Grugliasco, Italy
| | - Slavica Matić
- Institute for Sustainable Plant Protection, National Research Council, Strada delle Cacce 73, 10135 Turin, Italy
| | - Amedeo Moine
- Institute for Sustainable Plant Protection, National Research Council, Strada delle Cacce 73, 10135 Turin, Italy
| | - Walter Chitarra
- Institute for Sustainable Plant Protection, National Research Council, Strada delle Cacce 73, 10135 Turin, Italy
- Council for Agricultural Research and Economics Centre of Viticultural and Enology Research (CREA-VE), Viale XXVIII Aprile 26, 31015 Conegliano, Italy
| | - Luca Nerva
- Institute for Sustainable Plant Protection, National Research Council, Strada delle Cacce 73, 10135 Turin, Italy
- Council for Agricultural Research and Economics Centre of Viticultural and Enology Research (CREA-VE), Viale XXVIII Aprile 26, 31015 Conegliano, Italy
| | - Chiara D’Errico
- Institute for Sustainable Plant Protection, National Research Council, Strada delle Cacce 73, 10135 Turin, Italy
| | - Chiara Pagliarani
- Institute for Sustainable Plant Protection, National Research Council, Strada delle Cacce 73, 10135 Turin, Italy
- Correspondence: (C.P.); (E.N.); Tel.: +39-01139771 (C.P. & E.N.)
| | - Emanuela Noris
- Institute for Sustainable Plant Protection, National Research Council, Strada delle Cacce 73, 10135 Turin, Italy
- Correspondence: (C.P.); (E.N.); Tel.: +39-01139771 (C.P. & E.N.)
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13
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Tian H, Watanabe Y, Nguyen KH, Tran CD, Abdelrahman M, Liang X, Xu K, Sepulveda C, Mostofa MG, Van Ha C, Nelson DC, Mochida K, Tian C, Tanaka M, Seki M, Miao Y, Tran LSP, Li W. KARRIKIN UPREGULATED F-BOX 1 negatively regulates drought tolerance in Arabidopsis. PLANT PHYSIOLOGY 2022; 190:2671-2687. [PMID: 35822606 PMCID: PMC9706471 DOI: 10.1093/plphys/kiac336] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 02/11/2022] [Accepted: 06/26/2022] [Indexed: 06/15/2023]
Abstract
The karrikin (KAR) receptor and several related signaling components have been identified by forward genetic screening, but only a few studies have reported on upstream and downstream KAR signaling components and their roles in drought tolerance. Here, we characterized the functions of KAR UPREGULATED F-BOX 1 (KUF1) in drought tolerance using a reverse genetics approach in Arabidopsis (Arabidopsis thaliana). We observed that kuf1 mutant plants were more tolerant to drought stress than wild-type (WT) plants. To clarify the mechanisms by which KUF1 negatively regulates drought tolerance, we performed physiological, transcriptome, and morphological analyses. We found that kuf1 plants limited leaf water loss by reducing stomatal aperture and cuticular permeability. In addition, kuf1 plants showed increased sensitivity of stomatal closure, seed germination, primary root growth, and leaf senescence to abscisic acid (ABA). Genome-wide transcriptome comparisons of kuf1 and WT rosette leaves before and after dehydration showed that the differences in various drought tolerance-related traits were accompanied by differences in the expression of genes associated with stomatal closure (e.g. OPEN STOMATA 1), lipid and fatty acid metabolism (e.g. WAX ESTER SYNTHASE), and ABA responsiveness (e.g. ABA-RESPONSIVE ELEMENT 3). The kuf1 mutant plants had higher root/shoot ratios and root hair densities than WT plants, suggesting that they could absorb more water than WT plants. Together, these results demonstrate that KUF1 negatively regulates drought tolerance by modulating various physiological traits, morphological adjustments, and ABA responses and that the genetic manipulation of KUF1 in crops is a potential means of enhancing their drought tolerance.
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Affiliation(s)
- Hongtao Tian
- Jilin Da’an Agro-ecosystem National Observation Research Station, Changchun Jingyuetan Remote Sensing Experiment Station, Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
- State Key Laboratory of Cotton Biology, Henan Joint International Laboratory for Crop Multi-Omics Research, School of Life Sciences, Henan University, No. 85 Jinming Road, Kaifeng 475004, China
| | - Yasuko Watanabe
- Bioproductivity Informatics Research Team, RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan
| | - Kien Huu Nguyen
- National Key Laboratory for Plant Cell Biotechnology, Agricultural Genetics Institute, Vietnam Academy of Agricultural Science, Pham-Van-Dong Str., Hanoi, 100000, Vietnam
| | - Cuong Duy Tran
- National Key Laboratory for Plant Cell Biotechnology, Agricultural Genetics Institute, Vietnam Academy of Agricultural Science, Pham-Van-Dong Str., Hanoi, 100000, Vietnam
| | - Mostafa Abdelrahman
- Botany Department, Faculty of Science, Aswan University, Aswan 81528, Egypt
- Molecular Biotechnology Program, Faculty of Science, Galala University, Suze, New Galala 43511, Egypt
| | - Xiaohan Liang
- State Key Laboratory of Cotton Biology, Henan Joint International Laboratory for Crop Multi-Omics Research, School of Life Sciences, Henan University, No. 85 Jinming Road, Kaifeng 475004, China
| | - Kun Xu
- State Key Laboratory of Cotton Biology, Henan Joint International Laboratory for Crop Multi-Omics Research, School of Life Sciences, Henan University, No. 85 Jinming Road, Kaifeng 475004, China
| | - Claudia Sepulveda
- Department of Botany & Plant Sciences, University of California, Riverside, California 92521, USA
| | - Mohammad Golam Mostofa
- Institute of Genomics for Crop Abiotic Stress Tolerance, Texas Tech University, Lubbock, Texas 79409, USA
| | - Chien Van Ha
- Institute of Genomics for Crop Abiotic Stress Tolerance, Texas Tech University, Lubbock, Texas 79409, USA
| | - David C Nelson
- Department of Botany & Plant Sciences, University of California, Riverside, California 92521, USA
| | - Keiichi Mochida
- Bioproductivity Informatics Research Team, RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi, Yokohama 230-0045, Japan
- Microalgae Production Control Technology Laboratory, RIKEN Baton Zone Program, RIKEN Cluster for Science, Technology and Innovation Hub, Yokohama, Japan
- Kihara Institute for Biological Research, Yokohama City University, Yokohama, Japan
- Graduate School of Nanobioscience, Yokohama City University, Yokohama, Japan
- School of Information and Data Sciences, Nagasaki University, Nagasaki, Japan
| | - Chunjie Tian
- Jilin Da’an Agro-ecosystem National Observation Research Station, Changchun Jingyuetan Remote Sensing Experiment Station, Key Laboratory of Mollisols Agroecology, Northeast Institute of Geography and Agroecology, Chinese Academy of Sciences, Changchun 130102, China
| | - Maho Tanaka
- Plant Genomic Network Research Team, RIKEN Center for Sustainable Resource Science, Yokohama, Japan
- Plant Epigenome Regulation Laboratory, RIKEN Cluster for Pioneering Research, Wako, Japan
| | - Motoaki Seki
- Plant Genomic Network Research Team, RIKEN Center for Sustainable Resource Science, Yokohama, Japan
- Plant Epigenome Regulation Laboratory, RIKEN Cluster for Pioneering Research, Wako, Japan
| | - Yuchen Miao
- State Key Laboratory of Cotton Biology, Henan Joint International Laboratory for Crop Multi-Omics Research, School of Life Sciences, Henan University, No. 85 Jinming Road, Kaifeng 475004, China
| | | | - Weiqiang Li
- Author for correspondence: or (W.L.), (L.-S.P.T.)
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14
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Wang N, Wang S, Qi F, Wang Y, Lin Y, Zhou Y, Meng W, Zhang C, Wang Y, Ma J. Autotetraploidization Gives Rise to Differential Gene Expression in Response to Saline Stress in Rice. PLANTS (BASEL, SWITZERLAND) 2022; 11:3114. [PMID: 36432844 PMCID: PMC9698567 DOI: 10.3390/plants11223114] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 10/13/2022] [Revised: 11/12/2022] [Accepted: 11/14/2022] [Indexed: 06/16/2023]
Abstract
Plant polyploidization represents an effective means for plants to perpetuate their adaptive advantage in the face of environmental variation. Numerous studies have identified differential responsiveness to environmental cues between polyploids and their related diploids, and polyploids might better adapt to changing environments. However, the mechanism that underlies polyploidization contribution during abiotic stress remains hitherto obscure and needs more comprehensive assessment. In this study, we profile morphological and physiological characteristics, and genome-wide gene expression between an autotetraploid rice and its diploid donor plant following saline stress. The results show that the autotetraploid rice is more tolerant to saline stress than its diploid precursor. The physiological characteristics were rapidly responsive to saline stress in the first 24 h, during which the elevations in sodium ion, superoxide dismutase, peroxidase, and 1-aminocyclopropane-1-carboxylic acid were all significantly higher in the autotetraploid than in the diploid rice. Meanwhile, the genome-wide gene expression analysis revealed that the genes related to ionic transport, peroxidase activity, and phytohormone metabolism were differentially expressed in a significant manner between the autotetraploid and the diploid rice in response to saline stress. These findings support the hypothesis that diverse mechanisms exist between the autotetraploid rice and its diploid donor plant in response to saline stress, providing vital information for improving our understanding on the enhanced performance of polyploid plants in response to salt stress.
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Affiliation(s)
- Ningning Wang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130117, China
| | - Shiyan Wang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130117, China
| | - Fan Qi
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130117, China
| | - Yingkai Wang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130117, China
| | - Yujie Lin
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130117, China
| | - Yiming Zhou
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130117, China
| | - Weilong Meng
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130117, China
| | - Chunying Zhang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130117, China
| | - Yunpeng Wang
- Institute of Agricultural Biotechnology, Jilin Academy of Agricultural Sciences, Changchun 130033, China
| | - Jian Ma
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130117, China
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15
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Mining Candidate Genes Related to Heavy Metals in Mature Melon ( Cucumis melo L.) Peel and Pulp Using WGCNA. Genes (Basel) 2022; 13:genes13101767. [PMID: 36292652 PMCID: PMC9602089 DOI: 10.3390/genes13101767] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/09/2022] [Revised: 09/16/2022] [Accepted: 09/23/2022] [Indexed: 11/04/2022] Open
Abstract
The content of metal ions in fruits is inseparable from plant intake of trace elements and health effects in the human body. To understand metal ion content in the fruit and pericarp of melon (Cucumis melo L.) and the candidate genes responsible for controlling this process, we analyzed the metal ion content in distinct parts of melon fruit and pericarp and performed RNA-seq. The results showed that the content of metal ions in melon fruit tissue was significantly higher than that in the pericarp. Based on transcriptome expression profiling, we found that the fruit and pericarp contained elevated levels of DEGs. GO functional annotations included cell surface receptor signaling, signal transduction, organic substance metabolism, carbohydrate derivative binding, and hormone-mediated signaling pathways. KEGG pathways included pectate lyase, pentose and glucuronate interconversions, H+-transporting ATPase, oxidative phosphorylation, plant hormone signal transduction, and MAPK signaling pathways. We also analyzed the expression patterns of genes and transcription factors involved in hormone biosynthesis and signal transduction. Using weighted gene co-expression network analysis (WGCNA), a co-expression network was constructed to identify a specific module that was significantly correlated with the content of metal ions in melon, after which the gene expression in the module was measured. Connectivity and qRT–PCR identified five candidate melon genes, LOC103501427, LOC103501539, LOC103503694, LOC103504124, and LOC107990281, associated with metal ion content. This study provides a theoretical basis for further understanding the molecular mechanism of heavy metal ion content in melon fruit and peel and provides new genetic resources for the study of heavy metal ion content in plant tissues.
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16
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Transcriptome Analyses Reveal the Role of Light in Releasing the Morphological Dormancy of Celery Seed by Integrating Plant Hormones, Sugar Metabolism and Endosperm Weakening. Int J Mol Sci 2022; 23:ijms231710140. [PMID: 36077537 PMCID: PMC9456436 DOI: 10.3390/ijms231710140] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/03/2022] [Revised: 08/20/2022] [Accepted: 08/24/2022] [Indexed: 11/17/2022] Open
Abstract
Celery seed is known to be difficult to germinate due to its morphological dormancy. Light is the key signal to release morphological dormancy and promote seed germination. However, this mechanism has rarely been studied. We performed physiological, transcriptome analyses on celery seed exposed to light and dark to decipher the mechanism by which light promotes germination of celery seed. The results showed that light significantly enhanced the expression of gibberellin synthesis genes and abscisic acid degradation genes and inhibited the expression of abscisic acid synthesis genes and gibberellin degradation genes. Moreover, gibberellin synthesis inhibitor could completely inhibit the germination capacity of celery seed, indicating that gibberellin is indispensable in the process of celery seed germination. Compared with dark, light also increased the activity of α-amylase and β-amylase and the expression of related coding genes and promoted the degradation of starch and the increase of soluble sugar content, suggesting that light enhanced the sugar metabolism of celery seed. In addition, transcriptome analysis revealed that many genes related to endosperm weakening (cell wall remodeling enzymes, extension proteins) were up-regulated under light. It was also found that light promoted the accumulation of hydrogen peroxide in the radicle, which promoted the endosperm weakening process of celery seed. Our results thus indicated that light signal may promote the release of morphological dormancy through the simultaneous action of multiple factors.
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17
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Matsui A, Todaka D, Tanaka M, Mizunashi K, Takahashi S, Sunaoshi Y, Tsuboi Y, Ishida J, Bashir K, Kikuchi J, Kusano M, Kobayashi M, Kawaura K, Seki M. Ethanol induces heat tolerance in plants by stimulating unfolded protein response. PLANT MOLECULAR BIOLOGY 2022; 110:131-145. [PMID: 35729482 DOI: 10.1007/s11103-022-01291-8] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2022] [Accepted: 05/26/2022] [Indexed: 05/24/2023]
Abstract
Ethanol priming induces heat stress tolerance by the stimulation of unfolded protein response. Global warming increases the risk of heat stress-related yield losses in agricultural crops. Chemical priming, using safe agents, that can flexibly activate adaptive regulatory responses to adverse conditions, is a complementary approach to genetic improvement for stress adaptation. In the present study, we demonstrated that pretreatment of Arabidopsis with a low concentration of ethanol enhances heat tolerance without suppressing plant growth. We also demonstrated that ethanol pretreatment improved leaf growth in lettuce (Lactuca sativa L.) plants grown in the field conditions under high temperatures. Transcriptome analysis revealed a set of genes that were up-regulated in ethanol-pretreated plants, relative to water-pretreated controls. Binding Protein 3 (BIP3), an endoplasmic reticulum (ER)-stress marker chaperone gene, was among the identified up-regulated genes. The expression levels of BIP3 were confirmed by RT-qPCR. Root-uptake of ethanol was metabolized to organic acids, nucleic acids, amines and other molecules, followed by an increase in putrescine content, which substantially promoted unfolded protein response (UPR) signaling and high-temperature acclimation. We also showed that inhibition of polyamine production and UPR signaling negated the heat stress tolerance induced by ethanol pretreatment. These findings collectively indicate that ethanol priming activates UPR signaling via putrescine accumulation, leading to enhanced heat stress tolerance. The information gained from this study will be useful for establishing ethanol-mediated chemical priming strategies that can be used to help maintain crop production under heat stress conditions.
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Affiliation(s)
- Akihiro Matsui
- RIKEN Center for Sustainable Resource Science, Plant Genomic Network Research Team, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
| | - Daisuke Todaka
- RIKEN Center for Sustainable Resource Science, Plant Genomic Network Research Team, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
| | - Maho Tanaka
- RIKEN Center for Sustainable Resource Science, Plant Genomic Network Research Team, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
- Plant Epigenome Regulation Laboratory, RIKEN Cluster for Pioneering Research, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan
| | - Kayoko Mizunashi
- RIKEN Center for Sustainable Resource Science, Plant Genomic Network Research Team, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
| | - Satoshi Takahashi
- RIKEN Center for Sustainable Resource Science, Plant Genomic Network Research Team, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
- Plant Epigenome Regulation Laboratory, RIKEN Cluster for Pioneering Research, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan
| | - Yuji Sunaoshi
- RIKEN Center for Sustainable Resource Science, Plant Genomic Network Research Team, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
- Kihara Institute for Biological Research, Yokohama City University, 641-12 Maioka-cho, Totsuka-ku, Yokohama, Kanagawa, 244-0813, Japan
| | - Yuuri Tsuboi
- Environmental Metabolic Analysis Research Team, RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
| | - Junko Ishida
- RIKEN Center for Sustainable Resource Science, Plant Genomic Network Research Team, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
- Plant Epigenome Regulation Laboratory, RIKEN Cluster for Pioneering Research, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan
| | - Khurram Bashir
- RIKEN Center for Sustainable Resource Science, Plant Genomic Network Research Team, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
- Department of Biological Sciences, SBA School of Science and Engineering, Lahore University of Management Sciences, Lahore, Pakistan
| | - Jun Kikuchi
- Environmental Metabolic Analysis Research Team, RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
| | - Miyako Kusano
- Metabolomics Research Group, RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
- Graduate School of Life and Environmental Sciences, University of Tsukuba, Tsukuba, Ibaraki, 305-8572, Japan
- Tsukuba Plant Innovation Research Center, University of Tsukuba, Tsukuba, Ibaraki, 305-8572, Japan
| | - Makoto Kobayashi
- Metabolomics Research Group, RIKEN Center for Sustainable Resource Science, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan
| | - Kanako Kawaura
- Kihara Institute for Biological Research, Yokohama City University, 641-12 Maioka-cho, Totsuka-ku, Yokohama, Kanagawa, 244-0813, Japan
| | - Motoaki Seki
- RIKEN Center for Sustainable Resource Science, Plant Genomic Network Research Team, 1-7-22 Suehiro-cho, Tsurumi-ku, Yokohama, Kanagawa, 230-0045, Japan.
- Plant Epigenome Regulation Laboratory, RIKEN Cluster for Pioneering Research, 2-1 Hirosawa, Wako, Saitama, 351-0198, Japan.
- Kihara Institute for Biological Research, Yokohama City University, 641-12 Maioka-cho, Totsuka-ku, Yokohama, Kanagawa, 244-0813, Japan.
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18
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Gámez-Arjona FM, Sánchez-Rodríguez C, Montesinos JC. The root apoplastic pH as an integrator of plant signaling. FRONTIERS IN PLANT SCIENCE 2022; 13:931979. [PMID: 36082302 PMCID: PMC9448249 DOI: 10.3389/fpls.2022.931979] [Citation(s) in RCA: 5] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 04/29/2022] [Accepted: 07/26/2022] [Indexed: 06/15/2023]
Abstract
Plant nutrition, growth, and response to environmental stresses are pH-dependent processes that are regulated at the apoplastic and subcellular levels. The root apoplastic pH is especially sensitive to external cues and can also be modified by intracellular inputs, such as hormonal signaling. Optimal crosstalk of the mechanisms involved in the extent and span of the apoplast pH fluctuations promotes plant resilience to detrimental biotic and abiotic factors. The fact that variations in local pHs are a standard mechanism in different signaling pathways indicates that the pH itself can be the pivotal element to provide a physiological context to plant cell regions, allowing a proportional reaction to different situations. This review brings a collective vision of the causes that initiate root apoplastic pHs variations, their interaction, and how they influence root response outcomes.
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Wang N, Lin Y, Qi F, Xiaoyang C, Peng Z, Yu Y, Liu Y, Zhang J, Qi X, Deyholos M, Zhang J. Comprehensive Analysis of Differentially Expressed Genes and Epigenetic Modification-Related Expression Variation Induced by Saline Stress at Seedling Stage in Fiber and Oil Flax, Linum usitatissimum L. PLANTS (BASEL, SWITZERLAND) 2022; 11:2053. [PMID: 35956530 PMCID: PMC9370232 DOI: 10.3390/plants11152053] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/03/2022] [Revised: 07/23/2022] [Accepted: 08/03/2022] [Indexed: 06/15/2023]
Abstract
The ability of different germplasm to adapt to a saline-alkali environment is critical to learning about the tolerance mechanism of saline-alkali stress in plants. Flax is an important oil and fiber crop in many countries. However, its molecular tolerance mechanism under saline stress is still not clear. In this study, we studied morphological, physiological characteristics, and gene expression variation in the root and leaf in oil and fiber flax types under saline stress, respectively. Abundant differentially expressed genes (DEGs) induced by saline stress, tissue/organ specificity, and different genotypes involved in plant hormones synthesis and metabolism and transcription factors and epigenetic modifications were detected. The present report provides useful information about the mechanism of flax response to saline stress and could lead to the future elucidation of the specific functions of these genes and help to breed suitable flax varieties for saline/alkaline soil conditions.
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Affiliation(s)
- Ningning Wang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 131018, China
| | - Yujie Lin
- Faculty of Agronomy, Jilin Agricultural University, Changchun 131018, China
| | - Fan Qi
- Faculty of Agronomy, Jilin Agricultural University, Changchun 131018, China
| | - Chunxiao Xiaoyang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 131018, China
| | - Zhanwu Peng
- Information Center, Jilin Agricultural University, Changchun 130000, China
| | - Ying Yu
- School of Basic Medicine, Guizhou University of Traditional Chinese Medicine, Guiyang 550025, China
| | - Yingnan Liu
- Institute of Natural Resource and Ecology, Heilongjiang Academy of Science, Harbin 150040, China
| | - Jun Zhang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 131018, China
| | - Xin Qi
- Faculty of Agronomy, Jilin Agricultural University, Changchun 131018, China
| | - Michael Deyholos
- Department of Biology, University of British Columbia Okanagan, Kelowna, BC V1V 1V7, Canada
| | - Jian Zhang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 131018, China
- Department of Biology, University of British Columbia Okanagan, Kelowna, BC V1V 1V7, Canada
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20
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Advances in the Molecular Mechanisms of Abscisic Acid and Gibberellins Functions in Plants 2.0. Int J Mol Sci 2022; 23:ijms23158524. [PMID: 35955659 PMCID: PMC9368775 DOI: 10.3390/ijms23158524] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/23/2022] [Accepted: 07/27/2022] [Indexed: 02/05/2023] Open
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21
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Mi Z, Ma Y, Liu P, Zhang H, Zhang L, Jia W, Zhu X, Wang Y, Zhang C, Du L, Li X, Chen H, Han T, Liu H. Combining Metabolic Analysis With Biological Endpoints Provides a View Into the Drought Resistance Mechanism of Carex breviculmis. FRONTIERS IN PLANT SCIENCE 2022; 13:945441. [PMID: 35982691 PMCID: PMC9380063 DOI: 10.3389/fpls.2022.945441] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 05/16/2022] [Accepted: 06/08/2022] [Indexed: 06/15/2023]
Abstract
Metabolomics is an effective tool to test the response of plants to environmental stress; however, the relationships between metabolites and biological endpoints remained obscure in response to drought stress. Carex breviculmis is widely used in forage production, turf management, and landscape application and it is particularly resistant to drought stress. We investigated the metabolomic responses of C. breviculmis to drought stress by imposing a 22-day natural soil water loss. The results showed that water-deficit restrained plant growth, reducing plant height, leaf fresh weight, and total weight, however, increasing soluble protein content and malondialdehyde content. In total, 129 differential metabolites in the leaves were detected between drought and control using the Ultrahigh Performance Liquid Chromatography-Mass Spectrometer (UPLC-MS) method. Drought enhanced most of the primary and secondary metabolites in the differential metabolites. Almost all the sugars, amino acids, organic acids, phytohormones, nucleotides, phenylpropanoids and polyketides in the differential metabolites were negatively correlated with plant height and leaf fresh weight, while they were positively correlated with soluble protein content and malondialdehyde content. Metabolic pathway analysis showed that drought stress significantly affected aminoacyl-tRNA biosynthesis, TCA cycling, starch and sucrose metabolism. Our study is the first statement on metabolomic responses to drought stress in the drought-enduring plant C. breviculmis. According to the result, the coordination between diverse metabolic pathways in C. breviculmis enables the plant to adapt to a drought environment. This study will provide a systematic framework for explaining the metabolic plasticity and drought tolerance mechanisms of C. breviculmis under drought stress.
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Affiliation(s)
- Zhaorong Mi
- School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, China
- Henan Province Engineering Research Center of Horticultural Plant Resource Utilization and Germplasm Enhancement, Xinxiang, China
| | - Yingying Ma
- School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, China
- Henan Province Engineering Research Center of Horticultural Plant Resource Utilization and Germplasm Enhancement, Xinxiang, China
| | - Pinlin Liu
- School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, China
- Henan Province Engineering Research Center of Horticultural Plant Resource Utilization and Germplasm Enhancement, Xinxiang, China
| | - Haoyi Zhang
- School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, China
- Henan Province Engineering Research Center of Horticultural Plant Resource Utilization and Germplasm Enhancement, Xinxiang, China
| | - Lu Zhang
- School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, China
- Henan Province Engineering Research Center of Horticultural Plant Resource Utilization and Germplasm Enhancement, Xinxiang, China
| | - Wenqing Jia
- School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, China
- Henan Province Engineering Research Center of Horticultural Plant Resource Utilization and Germplasm Enhancement, Xinxiang, China
| | - Xiaopei Zhu
- School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, China
- Henan Province Engineering Research Center of Horticultural Plant Resource Utilization and Germplasm Enhancement, Xinxiang, China
| | - Yanli Wang
- School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, China
- Henan Province Engineering Research Center of Horticultural Plant Resource Utilization and Germplasm Enhancement, Xinxiang, China
| | - Chan Zhang
- College of Life Sciences, Henan Normal University, Xinxiang, China
| | - Lin Du
- School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, China
- Henan Province Engineering Research Center of Horticultural Plant Resource Utilization and Germplasm Enhancement, Xinxiang, China
| | - Xilin Li
- School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, China
- Henan Province Engineering Research Center of Horticultural Plant Resource Utilization and Germplasm Enhancement, Xinxiang, China
| | - Haitao Chen
- School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, China
- Henan Province Engineering Research Center of Horticultural Plant Resource Utilization and Germplasm Enhancement, Xinxiang, China
| | - Tao Han
- School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, China
- Henan Province Engineering Research Center of Horticultural Plant Resource Utilization and Germplasm Enhancement, Xinxiang, China
| | - Huichao Liu
- School of Horticulture and Landscape Architecture, Henan Institute of Science and Technology, Xinxiang, China
- Henan Province Engineering Research Center of Horticultural Plant Resource Utilization and Germplasm Enhancement, Xinxiang, China
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22
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Ahmad I, Zhu G, Zhou G, Song X, Hussein Ibrahim ME, Ibrahim Salih EG, Hussain S, Younas MU. Pivotal Role of Phytohormones and Their Responsive Genes in Plant Growth and Their Signaling and Transduction Pathway under Salt Stress in Cotton. Int J Mol Sci 2022; 23:ijms23137339. [PMID: 35806344 PMCID: PMC9266544 DOI: 10.3390/ijms23137339] [Citation(s) in RCA: 13] [Impact Index Per Article: 6.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2022] [Revised: 06/24/2022] [Accepted: 06/29/2022] [Indexed: 02/06/2023] Open
Abstract
The presence of phyto-hormones in plants at relatively low concentrations plays an indispensable role in regulating crop growth and yield. Salt stress is one of the major abiotic stresses limiting cotton production. It has been reported that exogenous phyto-hormones are involved in various plant defense systems against salt stress. Recently, different studies revealed the pivotal performance of hormones in regulating cotton growth and yield. However, a comprehensive understanding of these exogenous hormones, which regulate cotton growth and yield under salt stress, is lacking. In this review, we focused on new advances in elucidating the roles of exogenous hormones (gibberellin (GA) and salicylic acid (SA)) and their signaling and transduction pathways and the cross-talk between GA and SA in regulating crop growth and development under salt stress. In this review, we not only focused on the role of phyto-hormones but also identified the roles of GA and SA responsive genes to salt stress. Our aim is to provide a comprehensive review of the performance of GA and SA and their responsive genes under salt stress, assisting in the further elucidation of the mechanism that plant hormones use to regulate growth and yield under salt stress.
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Affiliation(s)
- Irshad Ahmad
- Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Yangzhou University, Yangzhou 225009, China; (I.A.); (M.E.H.I.); (E.G.I.S.)
| | - Guanglong Zhu
- Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Yangzhou University, Yangzhou 225009, China; (I.A.); (M.E.H.I.); (E.G.I.S.)
- Correspondence: (G.Z.); (G.Z.)
| | - Guisheng Zhou
- Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Yangzhou University, Yangzhou 225009, China; (I.A.); (M.E.H.I.); (E.G.I.S.)
- Key Lab of Crop Genetics & Physiology of Jiangsu Province, Yangzhou University, Yangzhou 225009, China
- Correspondence: (G.Z.); (G.Z.)
| | - Xudong Song
- Jiangsu Yanjiang Area Institute of Agricultural Sciences, Nantong 226541, China;
| | - Muhi Eldeen Hussein Ibrahim
- Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Yangzhou University, Yangzhou 225009, China; (I.A.); (M.E.H.I.); (E.G.I.S.)
- Department of Agronomy, College of Agricultural Studies, Sudan University of Science and Technology, Khartoum 13311, Sudan
| | - Ebtehal Gabralla Ibrahim Salih
- Joint International Research Laboratory of Agriculture and Agri-Product Safety of the Ministry of Education of China, Yangzhou University, Yangzhou 225009, China; (I.A.); (M.E.H.I.); (E.G.I.S.)
| | - Shahid Hussain
- Institutes of Agricultural Science and Technology Development, Yangzhou University, Yangzhou 225009, China;
| | - Muhammad Usama Younas
- Department of Crop Genetics and Breeding, College of Agriculture, Yangzhou University, Yangzhou 225009, China;
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23
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Qu K, Cheng Y, Gao K, Ren W, Fry EL, Yin J, Liu Y. Growth-Defense Trade-Offs Induced by Long-term Overgrazing Could Act as a Stress Memory. FRONTIERS IN PLANT SCIENCE 2022; 13:917354. [PMID: 35720531 PMCID: PMC9201768 DOI: 10.3389/fpls.2022.917354] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Subscribe] [Scholar Register] [Received: 04/11/2022] [Accepted: 04/26/2022] [Indexed: 05/28/2023]
Abstract
Long-term overgrazing (OG) is one of the key drivers of global grassland degradation with severe loss of productivity and ecosystem functions, which may result in stress memory such as smaller stature of grassland plants. However, how the OG-induced stress memory could be regulated by phytohormones is unknown. In this study, we investigated the changes of four phytohormones of cloned offspring of Leymus chinensis that were developed from no-grazing (NG) plants and OG plants with a grazing history of 30 years. The concentrations of auxin (IAA) and gibberellic acid (GA) in OG plant leaves were 45% and 20% lower than control, respectively. Meanwhile, the level of abscisic acid (ABA) in OG leaves nearly doubled compared with that in NG leaves. The situation was quite similar in roots. Unexpectedly, no significant changes in the jasmonic acid (JA) level were observed between OG and NG plants. The changes in gene expression patterns between OG and NG plants were also investigated by transcriptomic analysis. In total, 302 differentially expressed genes (DEGs) were identified between OG and NG plants, which were mainly classified into the functions of synthesis, receptor, and signal transduction processes of phytohormones. The expression of 24 key genes related to the biosynthesis and signal transduction of IAA and GA was downregulated in OG plants. Among them, OASA1 and AO1 (regulating the biosynthesis of IAA and ABA, respectively) were reduced significantly by 88 and 92%, respectively. In addition, the content of secondary metabolites related to plant defense such as flavonoids and phenols was also increased in leaves. Taken together, the decrease of positive plant growth-related hormones (IAA and GA) together with the increase of plant stress-related hormones or factors (ABA, flavonoids, and phenols) induced the growth-defense trade-offs for L. chinensis adaptation to long-term OG stress. The findings reported in this study shed new light on the mechanism of plant-animal interaction in the grassland ecosystem and provide a deeper insight into optimizing grazing management and sustainable utilization of grassland.
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Affiliation(s)
- Kairi Qu
- School of Ecology and Environment, Inner Mongolia University, Hohhot, China
| | - Yunxiang Cheng
- School of Ecology and Environment, Inner Mongolia University, Hohhot, China
| | - Kairu Gao
- School of Ecology and Environment, Inner Mongolia University, Hohhot, China
| | - Weibo Ren
- School of Ecology and Environment, Inner Mongolia University, Hohhot, China
| | - Ellen L. Fry
- Department of Biology, Edge Hill University, Ormskirk, United Kingdom
| | - Jingjing Yin
- School of Ecology and Environment, Inner Mongolia University, Hohhot, China
| | - Yaling Liu
- Inner Mongolia Mongolian Grass Seed Industry Science and Technology Research Institute Co., Ltd., Hohhot, China
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Wang N, Fan X, Lin Y, Li Z, Wang Y, Zhou Y, Meng W, Peng Z, Zhang C, Ma J. Alkaline Stress Induces Different Physiological, Hormonal and Gene Expression Responses in Diploid and Autotetraploid Rice. Int J Mol Sci 2022; 23:ijms23105561. [PMID: 35628377 PMCID: PMC9142035 DOI: 10.3390/ijms23105561] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/13/2022] [Revised: 05/09/2022] [Accepted: 05/12/2022] [Indexed: 02/04/2023] Open
Abstract
Saline−alkaline stress is a critical abiotic stress that negatively affects plants’ growth and development. Considerably higher enhancements in plant tolerance to saline−alkaline stress have often been observed in polyploid plants compared to their diploid relatives, the underlying mechanism of which remains elusive. In this study, we explored the variations in morphological and physiological characteristics, phytohormones, and genome-wide gene expression between an autotetraploid rice and its diploid relative in response to alkaline stress. It was observed that the polyploidization in the autotetraploid rice imparted a higher level of alkaline tolerance than in its diploid relative. An eclectic array of physiological parameters commonly used for abiotic stress, such as proline, soluble sugars, and malondialdehyde, together with the activities of some selected antioxidant enzymes, was analyzed at five time points in the first 24 h following the alkaline stress treatment between the diploid and autotetraploid rice. Phytohormones, such as abscisic acid and indole-3-acetic acid were also comparatively evaluated between the two types of rice with different ploidy levels under alkaline stress. Transcriptomic analysis revealed that gene expression patterns were altered in accordance with the variations in the cellular levels of phytohormones between diploid and autotetraploid plants upon alkaline stress. In particular, the expression of genes related to peroxide and transcription factors was substantially upregulated in autotetraploid plants compared to diploid plants in response to the alkaline stress treatment. In essence, diploid and autotetraploid rice plants exhibited differential gene expression patterns in response to the alkaline stress, which may shed more light on the mechanism underpinning the ameliorated plant tolerance to alkaline stress following genome duplication.
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Affiliation(s)
- Ningning Wang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130000, China; (N.W.); (Y.L.); (Z.L.); (Y.W.); (Y.Z.); (W.M.); (C.Z.)
| | - Xuhong Fan
- Soybean Research Institute, Jilin Academy of Agricultural Sciences, Changchun 130033, China;
| | - Yujie Lin
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130000, China; (N.W.); (Y.L.); (Z.L.); (Y.W.); (Y.Z.); (W.M.); (C.Z.)
| | - Zhe Li
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130000, China; (N.W.); (Y.L.); (Z.L.); (Y.W.); (Y.Z.); (W.M.); (C.Z.)
| | - Yingkai Wang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130000, China; (N.W.); (Y.L.); (Z.L.); (Y.W.); (Y.Z.); (W.M.); (C.Z.)
| | - Yiming Zhou
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130000, China; (N.W.); (Y.L.); (Z.L.); (Y.W.); (Y.Z.); (W.M.); (C.Z.)
| | - Weilong Meng
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130000, China; (N.W.); (Y.L.); (Z.L.); (Y.W.); (Y.Z.); (W.M.); (C.Z.)
| | - Zhanwu Peng
- Information Center, Jilin Agricultural University, Changchun 130000, China;
| | - Chunying Zhang
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130000, China; (N.W.); (Y.L.); (Z.L.); (Y.W.); (Y.Z.); (W.M.); (C.Z.)
| | - Jian Ma
- Faculty of Agronomy, Jilin Agricultural University, Changchun 130000, China; (N.W.); (Y.L.); (Z.L.); (Y.W.); (Y.Z.); (W.M.); (C.Z.)
- Correspondence: ; Tel.: +86-431-845332776
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25
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Abstract
Plant hormones are signalling compounds that regulate crucial aspects of growth, development and environmental stress responses. Abiotic stresses, such as drought, salinity, heat, cold and flooding, have profound effects on plant growth and survival. Adaptation and tolerance to such stresses require sophisticated sensing, signalling and stress response mechanisms. In this Review, we discuss recent advances in understanding how diverse plant hormones control abiotic stress responses in plants and highlight points of hormonal crosstalk during abiotic stress signalling. Control mechanisms and stress responses mediated by plant hormones including abscisic acid, auxin, brassinosteroids, cytokinins, ethylene and gibberellins are discussed. We discuss new insights into osmotic stress sensing and signalling mechanisms, hormonal control of gene regulation and plant development during stress, hormone-regulated submergence tolerance and stomatal movements. We further explore how innovative imaging approaches are providing insights into single-cell and tissue hormone dynamics. Understanding stress tolerance mechanisms opens new opportunities for agricultural applications.
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26
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Suresh BV, Choudhary P, Aggarwal PR, Rana S, Singh RK, Ravikesavan R, Prasad M, Muthamilarasan M. De novo transcriptome analysis identifies key genes involved in dehydration stress response in kodo millet (Paspalum scrobiculatum L.). Genomics 2022; 114:110347. [PMID: 35337948 DOI: 10.1016/j.ygeno.2022.110347] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/24/2021] [Revised: 02/08/2022] [Accepted: 03/18/2022] [Indexed: 01/14/2023]
Abstract
Kodo millet (Paspalum scrobiculatum L.) is a small millet species known for its excellent nutritional and climate-resilient traits. To understand the genes and pathways underlying dehydration stress tolerance of kodo millet, the transcriptome of cultivar 'CO3' subjected to dehydration stress (0 h, 3 h, and 6 h) was sequenced. The study generated 239.1 million clean reads that identified 9201, 9814, and 2346 differentially expressed genes (DEGs) in 0 h vs. 3 h, 0 h vs. 6 h, and 3 h vs. 6 h libraries, respectively. The DEGs were found to be associated with vital molecular pathways, including hormone metabolism and signaling, antioxidant scavenging, photosynthesis, and cellular metabolism, and were validated using qRT-PCR. Also, a higher abundance of uncharacterized genes expressed during stress warrants further studies to characterize this class of genes to understand their role in dehydration stress response. Altogether, the study provides insights into the transcriptomic response of kodo millet during dehydration stress.
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Affiliation(s)
- Bonthala Venkata Suresh
- Quantitative Genetics and Genomics of Plants, Heinrich Heine University, Düsseldorf 40225, Germany.
| | - Pooja Choudhary
- Department of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad 500046, Telangana, India
| | - Pooja Rani Aggarwal
- Department of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad 500046, Telangana, India
| | - Sumi Rana
- Department of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad 500046, Telangana, India.
| | | | - Rajasekaran Ravikesavan
- Department of Millets, Centre for Plant Breeding and Genetics, Tamil Nadu Agricultural University, Coimbatore, Tamil Nadu, India.
| | - Manoj Prasad
- Department of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad 500046, Telangana, India; National Institute of Plant Genome Research, New Delhi 110067, India.
| | - Mehanathan Muthamilarasan
- Department of Plant Sciences, School of Life Sciences, University of Hyderabad, Hyderabad 500046, Telangana, India.
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Genome Wide Association Study Uncovers the QTLome for Osmotic Adjustment and Related Drought Adaptive Traits in Durum Wheat. Genes (Basel) 2022; 13:genes13020293. [PMID: 35205338 PMCID: PMC8871942 DOI: 10.3390/genes13020293] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/11/2021] [Revised: 01/25/2022] [Accepted: 01/29/2022] [Indexed: 01/27/2023] Open
Abstract
Osmotic adjustment (OA) is a major component of drought resistance in crops. The genetic basis of OA in wheat and other crops remains largely unknown. In this study, 248 field-grown durum wheat elite accessions grown under well-watered conditions, underwent a progressively severe drought treatment started at heading. Leaf samples were collected at heading and 17 days later. The following traits were considered: flowering time (FT), leaf relative water content (RWC), osmotic potential (ψs), OA, chlorophyll content (SPAD), and leaf rolling (LR). The high variability (3.89-fold) in OA among drought-stressed accessions resulted in high repeatability of the trait (h2 = 72.3%). Notably, a high positive correlation (r = 0.78) between OA and RWC was found under severe drought conditions. A genome-wide association study (GWAS) revealed 15 significant QTLs (Quantitative Trait Loci) for OA (global R2 = 63.6%), as well as eight major QTL hotspots/clusters on chromosome arms 1BL, 2BL, 4AL, 5AL, 6AL, 6BL, and 7BS, where a higher OA capacity was positively associated with RWC and/or SPAD, and negatively with LR, indicating a beneficial effect of OA on the water status of the plant. The comparative analysis with the results of 15 previous field trials conducted under varying water regimes showed concurrent effects of five OA QTL cluster hotspots on normalized difference vegetation index (NDVI), thousand-kernel weight (TKW), and/or grain yield (GY). Gene content analysis of the cluster regions revealed the presence of several candidate genes, including bidirectional sugar transporter SWEET, rhomboid-like protein, and S-adenosyl-L-methionine-dependent methyltransferases superfamily protein, as well as DREB1. Our results support OA as a valuable proxy for marker-assisted selection (MAS) aimed at enhancing drought resistance in wheat.
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Marquis V, Smirnova E, Graindorge S, Delcros P, Villette C, Zumsteg J, Heintz D, Heitz T. Broad-spectrum stress tolerance conferred by suppressing jasmonate signaling attenuation in Arabidopsis JASMONIC ACID OXIDASE mutants. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2022; 109:856-872. [PMID: 34808024 DOI: 10.1111/tpj.15598] [Citation(s) in RCA: 7] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/05/2021] [Revised: 11/02/2021] [Accepted: 11/17/2021] [Indexed: 06/13/2023]
Abstract
Jasmonate signaling for adaptative or developmental responses generally relies on an increased synthesis of the bioactive hormone jasmonoyl-isoleucine (JA-Ile), triggered by environmental or internal cues. JA-Ile is embedded in a complex metabolic network whose upstream and downstream components strongly contribute to hormone homeostasis and activity. We previously showed that JAO2, an isoform of four Arabidopsis JASMONIC ACID OXIDASES, diverts the precursor jasmonic acid (JA) to its hydroxylated form HO-JA to attenuate JA-Ile formation and signaling. Consequently, JAO2-deficient lines have elevated defenses and display improved tolerance to biotic stress. Here we further explored the organization and regulatory functions of the JAO pathway. Suppression of JAO2 enhances the basal expression of nearly 400 JA-regulated genes in unstimulated leaves, many of which being related to biotic and abiotic stress responses. Consistently, non-targeted metabolomic analysis revealed the constitutive accumulation of several classes of defensive compounds in jao2-1 mutant, including indole glucosinolates and breakdown products. The most differential compounds were agmatine phenolamides, but their genetic suppression did not alleviate the strong resistance of jao2-1 to Botrytis infection. Furthermore, jao2 alleles and a triple jao mutant exhibit elevated survival capacity upon severe drought stress. This latter phenotype occurs without recruiting stronger abscisic acid responses, but relies on enhanced JA-Ile signaling directing a distinct survival pathway with MYB47 transcription factor as a candidate mediator. Our findings reveal the selected spectrum of JA responses controlled by the JAO2 regulatory node and highlight the potential of modulating basal JA turnover to pre-activate mild transcriptional programs for multiple stress resilience.
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Affiliation(s)
- Valentin Marquis
- Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France
| | - Ekaterina Smirnova
- Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France
| | - Stéfanie Graindorge
- Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France
| | - Pauline Delcros
- Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France
| | - Claire Villette
- Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France
| | - Julie Zumsteg
- Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France
| | - Dimitri Heintz
- Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France
| | - Thierry Heitz
- Institut de Biologie Moléculaire des Plantes, CNRS, Université de Strasbourg, Strasbourg, France
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Urano K, Maruyama K, Koyama T, Gonzalez N, Inzé D, Yamaguchi-Shinozaki K, Shinozaki K. CIN-like TCP13 is essential for plant growth regulation under dehydration stress. PLANT MOLECULAR BIOLOGY 2022; 108:257-275. [PMID: 35050466 PMCID: PMC8873074 DOI: 10.1007/s11103-021-01238-5] [Citation(s) in RCA: 9] [Impact Index Per Article: 4.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/29/2021] [Accepted: 12/23/2021] [Indexed: 05/17/2023]
Abstract
A dehydration-inducible Arabidopsis CIN-like TCP gene, TCP13, acts as a key regulator of plant growth in leaves and roots under dehydration stress conditions. Plants modulate their shape and growth in response to environmental stress. However, regulatory mechanisms underlying the changes in shape and growth under environmental stress remain elusive. The CINCINNATA (CIN)-like TEOSINTE BRANCHED1/CYCLOIDEA/PCF (TCP) family of transcription factors (TFs) are key regulators for limiting the growth of leaves through negative effect of auxin response. Here, we report that stress-inducible CIN-like TCP13 plays a key role in inducing morphological changes in leaves and growth regulation in leaves and roots that confer dehydration stress tolerance in Arabidopsis thaliana. Transgenic Arabidopsis plants overexpressing TCP13 (35Spro::TCP13OX) exhibited leaf rolling, and reduced leaf growth under osmotic stress. The 35Spro::TCP13OX transgenic leaves showed decreased water loss from leaves, and enhanced dehydration tolerance compared with their control counterparts. Plants overexpressing a chimeric repressor domain SRDX-fused TCP13 (TCP13pro::TCP13SRDX) showed severely serrated leaves and enhanced root growth. Transcriptome analysis of TCP13pro::TCP13SRDX transgenic plants revealed that TCP13 affects the expression of dehydration- and abscisic acid (ABA)-regulated genes. TCP13 is also required for the expression of dehydration-inducible auxin-regulated genes, INDOLE-3-ACETIC ACID5 (IAA5) and LATERAL ORGAN BOUNDARIES (LOB) DOMAIN 1 (LBD1). Furthermore, tcp13 knockout mutant plants showed ABA-insensitive root growth and reduced dehydration-inducible gene expression. Our findings provide new insight into the molecular mechanism of CIN-like TCP that is involved in both auxin and ABA response under dehydration stress.
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Affiliation(s)
- Kaoru Urano
- Gene Discovery Research Group, RIKEN Center for Sustainable Resource Science (CSRS), 3-1-1 Koyadai, Tsukuba, Ibaraki, 305-0074, Japan.
- Institute of Agrobiological Sciences, NARO 3-1-3 Kannondai, Tsukuba, Ibaraki, 305-8604, Japan.
| | - Kyonoshin Maruyama
- Plant Biotechnology Division, Japan International Research Center for Agricultural Sciences (JIRCAS), 1-1 Ohwashi, Tsukuba, Ibaraki, 305-8686, Japan
| | - Tomotsugu Koyama
- Bioorganic Research Institute, Suntory Foundation for Life Sciences, Seikacho, Kyoto, 619-0284, Japan
| | - Nathalie Gonzalez
- INRAE, Université de Bordeaux, UMR1332 Biologie du Fruit Et Pathologie, 33882, Villenave d'Ornon Cedex, France
| | - Dirk Inzé
- Department of Plant Biotechnology and Bioinformatics, Ghent University, 9052, Ghent, Belgium
- VIB Center for Plant Systems Biology, 9052, Ghent, Belgium
| | - Kazuko Yamaguchi-Shinozaki
- Laboratory of Plant Molecular Physiology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, Bunkyo-ku, Tokyo, 113-8657, Japan
| | - Kazuo Shinozaki
- Gene Discovery Research Group, RIKEN Center for Sustainable Resource Science (CSRS), 3-1-1 Koyadai, Tsukuba, Ibaraki, 305-0074, Japan.
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Salem MA, Zayed A. Liquid Chromatography-Tandem Mass Spectrometry-Based Profiling of Plant Hormones. Methods Mol Biol 2022; 2462:125-133. [PMID: 35152385 DOI: 10.1007/978-1-0716-2156-1_10] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 06/14/2023]
Abstract
Phytohormones plays crucial physiological functions in plants, where they are involved in plant development, reproduction, defense, and many other functions. Phytohormones production has been found to be regulated in response to abiotic and biotic factors affecting the plant metabolism, and therefore, biosynthesis of primary and secondary metabolites. Thus, the detection and quantification of phytohormones in different plant tissues are essential to be determined unraveling the various plant metabolic pathways and behavior. Yet phytohormones analysis is always problematic, since they are found in extremely low concentrations and have a wide range of chemical and physicochemical properties. As a result, the ideal method should start with an appropriate extraction procedure followed by quantification by highly sensitive instrumental techniques providing precise and robust results. The current chapter presents an improved extraction method based on liquid-liquid extraction from a 50-mg aliquot of plant tissue for analysis of the major classes of phytohormones. Then, mass spectrometry (MS) analysis is conducted using quadrupole/linear ion trap (QLIT) mass analyzer equipped with electrospray ionization (ESI) source after a liquid chromatographic separation step. The developed method demonstrates an appropriate feasibility addressing biological questions related to phytohormones production and regulation.
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Affiliation(s)
- Mohamed A Salem
- Department of Pharmacognosy, Faculty of Pharmacy, Menoufia University, Menoufia, Egypt.
| | - Ahmed Zayed
- Department of Pharmacognosy, College of Pharmacy, Tanta University, Tanta, Egypt
- Institute of Bioprocess Engineering, Technical University of Kaiserslautern, Kaiserslautern, Germany
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31
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SHINOZAKI K, YAMAGUCHI-SHINOZAKI K. Functional genomics in plant abiotic stress responses and tolerance: From gene discovery to complex regulatory networks and their application in breeding. PROCEEDINGS OF THE JAPAN ACADEMY. SERIES B, PHYSICAL AND BIOLOGICAL SCIENCES 2022; 98:470-492. [PMID: 36216536 PMCID: PMC9614206 DOI: 10.2183/pjab.98.024] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 05/24/2022] [Accepted: 07/08/2022] [Indexed: 06/16/2023]
Abstract
Land plants have developed sophisticated systems to cope with severe stressful environmental conditions during evolution. Plants have complex molecular systems to respond and adapt to abiotic stress, including drought, cold, and heat stress. Since 1989, we have been working to understand the complex molecular mechanisms of plant responses to severe environmental stress conditions based on functional genomics approaches with Arabidopsis thaliana as a model plant. We focused on the function of drought-inducible genes and the regulation of their stress-inducible transcription, perception and cellular signal transduction of stress signals to describe plant stress responses and adaptation at the molecular and cellular levels. We have identified key genes and factors in the regulation of complex responses and tolerance of plants in response to dehydration and temperature stresses. In this review article, we describe our 30-year experience in research and development based on functional genomics to understand sophisticated systems in plant response and adaptation to environmental stress conditions.
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Affiliation(s)
- Kazuo SHINOZAKI
- RIKEN Center for Sustainable Resource Science, Tsukuba, Ibaraki, Japan
| | - Kazuko YAMAGUCHI-SHINOZAKI
- Research Institute for Agricultural and Life Sciences, Tokyo University of Agriculture, Tokyo, Japan
- Graduate School of Agricultural and Life Sciences, The University of Tokyo, Tokyo, Japan
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32
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Bergès SE, Vile D, Yvon M, Masclef D, Dauzat M, van Munster M. Water deficit changes the relationships between epidemiological traits of Cauliflower mosaic virus across diverse Arabidopsis thaliana accessions. Sci Rep 2021; 11:24103. [PMID: 34916537 PMCID: PMC8677750 DOI: 10.1038/s41598-021-03462-x] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2021] [Accepted: 11/26/2021] [Indexed: 11/30/2022] Open
Abstract
Changes in plant abiotic environments may alter plant virus epidemiological traits, but how such changes actually affect their quantitative relationships is poorly understood. Here, we investigated the effects of water deficit on Cauliflower mosaic virus (CaMV) traits (virulence, accumulation, and vectored-transmission rate) in 24 natural Arabidopsis thaliana accessions grown under strictly controlled environmental conditions. CaMV virulence increased significantly in response to water deficit during vegetative growth in all A. thaliana accessions, while viral transmission by aphids and within-host accumulation were significantly altered in only a few. Under well-watered conditions, CaMV accumulation was correlated positively with CaMV transmission by aphids, while under water deficit, this relationship was reversed. Hence, under water deficit, high CaMV accumulation did not predispose to increased horizontal transmission. No other significant relationship between viral traits could be detected. Across accessions, significant relationships between climate at collection sites and viral traits were detected but require further investigation. Interactions between epidemiological traits and their alteration under abiotic stresses must be accounted for when modelling plant virus epidemiology under scenarios of climate change.
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Affiliation(s)
- Sandy E Bergès
- LEPSE, Univ Montpellier, INRAE, Institut Agro, Montpellier, France
- PHIM, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Denis Vile
- LEPSE, Univ Montpellier, INRAE, Institut Agro, Montpellier, France.
| | - Michel Yvon
- PHIM, Univ Montpellier, CIRAD, INRAE, Institut Agro, Montpellier, France
| | - Diane Masclef
- LEPSE, Univ Montpellier, INRAE, Institut Agro, Montpellier, France
| | - Myriam Dauzat
- LEPSE, Univ Montpellier, INRAE, Institut Agro, Montpellier, France
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Transcriptomic Analysis Reveals Regulatory Networks for Osmotic Water Stress and Rewatering Response in the Leaves of Ginkgo biloba. FORESTS 2021. [DOI: 10.3390/f12121705] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 12/15/2022]
Abstract
To elucidate the transcriptomic regulation mechanisms that underlie the response of Ginkgo biloba to dehydration and rehydration, we used ginkgo saplings exposed to osmotically driven water stress and subsequent rewatering. When compared with a control group, 137, 1453, 1148, and 679 genes were differentially expressed in ginkgo leaves responding to 2, 6, 12, and 24 h of water deficit, and 796 and 1530 genes were differentially expressed responding to 24 and 48 h of rewatering. Upregulated genes participated in the biosynthesis of abscisic acid, eliminating reactive oxygen species (ROS), and biosynthesis of flavonoids and bilobalide, and downregulated genes were involved in water transport and cell wall enlargement in water stress-treated ginkgo leaves. Under rehydration conditions, the genes associated with water transport and cell wall enlargement were upregulated, and the genes that participated in eliminating ROS and the biosynthesis of flavonoids and bilobalide were downregulated in the leaves of G. biloba. Furthermore, the weighted gene coexpression networks were established and correlated with distinct water stress and rewatering time-point samples. Hub genes that act as key players in the networks were identified. Overall, these results indicate that the gene coexpression networks play essential roles in the transcriptional reconfiguration of ginkgo leaves in response to water stress and rewatering.
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Hsu PK, Takahashi Y, Merilo E, Costa A, Zhang L, Kernig K, Lee KH, Schroeder JI. Raf-like kinases and receptor-like (pseudo)kinase GHR1 are required for stomatal vapor pressure difference response. Proc Natl Acad Sci U S A 2021; 118:e2107280118. [PMID: 34799443 PMCID: PMC8617523 DOI: 10.1073/pnas.2107280118] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.7] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 09/30/2021] [Indexed: 12/19/2022] Open
Abstract
Stomatal pores close rapidly in response to low-air-humidity-induced leaf-to-air vapor pressure difference (VPD) increases, thereby reducing excessive water loss. The hydroactive signal-transduction mechanisms mediating high VPD-induced stomatal closure remain largely unknown. The kinetics of stomatal high-VPD responses were investigated by using time-resolved gas-exchange analyses of higher-order mutants in guard-cell signal-transduction branches. We show that the slow-type anion channel SLAC1 plays a relatively more substantial role than the rapid-type anion channel ALMT12/QUAC1 in stomatal VPD signaling. VPD-induced stomatal closure is not affected in mpk12/mpk4GC double mutants that completely disrupt stomatal CO2 signaling, indicating that VPD signaling is independent of the early CO2 signal-transduction pathway. Calcium imaging shows that osmotic stress causes cytoplasmic Ca2+ transients in guard cells. Nevertheless, osca1-2/1.3/2.2/2.3/3.1 Ca2+-permeable channel quintuple, osca1.3/1.7-channel double, cngc5/6-channel double, cngc20-channel single, cngc19/20crispr-channel double, glr3.2/3.3-channel double, cpk-kinase quintuple, cbl1/4/5/8/9 quintuple, and cbl2/3rf double mutants showed wild-type-like stomatal VPD responses. A B3-family Raf-like mitogen-activated protein (MAP)-kinase kinase kinase, M3Kδ5/RAF6, activates the OST1/SnRK2.6 kinase in plant cells. Interestingly, B3 Raf-kinase m3kδ5 and m3kδ1/δ5/δ6/δ7 (raf3/6/5/4) quadruple mutants, but not a 14-gene raf-kinase mutant including osmotic stress-linked B4-family Raf-kinases, exhibited slowed high-VPD responses, suggesting that B3-family Raf-kinases play an important role in stomatal VPD signaling. Moreover, high VPD-induced stomatal closure was impaired in receptor-like pseudokinase GUARD CELL HYDROGEN PEROXIDE-RESISTANT1 (GHR1) mutant alleles. Notably, the classical transient "wrong-way" VPD response was absent in ghr1 mutant alleles. These findings reveal genes and signaling mechanisms in the elusive high VPD-induced stomatal closing response pathway.
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Affiliation(s)
- Po-Kai Hsu
- Cell and Developmental Biology Section, Division of Biological Sciences, University of California San Diego, La Jolla, CA 92093
| | - Yohei Takahashi
- Cell and Developmental Biology Section, Division of Biological Sciences, University of California San Diego, La Jolla, CA 92093
| | - Ebe Merilo
- Institute of Technology, University of Tartu, Tartu 50411, Estonia
| | - Alex Costa
- Cell and Developmental Biology Section, Division of Biological Sciences, University of California San Diego, La Jolla, CA 92093
- Department of Biosciences, University of Milan, Milan 20133, Italy
- Institute of Biophysics, Consiglio Nazionale delle Ricerche, 20133 Milan, Italy
| | - Li Zhang
- Cell and Developmental Biology Section, Division of Biological Sciences, University of California San Diego, La Jolla, CA 92093
| | - Klara Kernig
- Cell and Developmental Biology Section, Division of Biological Sciences, University of California San Diego, La Jolla, CA 92093
| | - Katie H Lee
- Cell and Developmental Biology Section, Division of Biological Sciences, University of California San Diego, La Jolla, CA 92093
| | - Julian I Schroeder
- Cell and Developmental Biology Section, Division of Biological Sciences, University of California San Diego, La Jolla, CA 92093;
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35
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Mehmood M, Pérez-Llorca M, Casadesús A, Farrakh S, Munné-Bosch S. Leaf size modulation by cytokinins in sesame plants. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 167:763-770. [PMID: 34530321 DOI: 10.1016/j.plaphy.2021.09.013] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/19/2021] [Revised: 09/07/2021] [Accepted: 09/09/2021] [Indexed: 06/13/2023]
Abstract
Phytohormones play important roles in controlling leaf size and in the modulation of various stress responses, including drought. In this study, hormone profiling analyses by ultra high-performance liquid chromatography coupled to electrospray ionization tandem mass spectrometry (UHPLC-MS/MS) was performed in leaves collected at three stages of active leaf growth to unravel which phytohormones modulate leaf size in sesame (Sesamum indicum L.) plants, an important oil-rich crop. Furthermore, endogenous contents of phytohormones were measured in parallel to various stress markers in sesame plants exposed to mild water deficit conditions by withholding water in potted plants for one week. Results revealed a major role of cytokinins and auxin in the modulation of leaf growth in sesame plants (which increased by 21.5 and 2.1-fold, respectively, with leaf growth), as well as a putative antagonistic response between jasmonic acid and salicylic acid during leaf development. Furthermore, growth arrest during water deficit stress appeared to be modulated by cytokinins, the endogenous contents of which decreased (by 48%) in parallel with ABA increases (by 59%). Reductions in the contents of the active cytokinin trans-zeatin occurred in parallel with increases in isopentenyladenine contents under drought, which suggests a partial metabolic limitation in cytokinin biosynthesis in leaves upon water deficit stress. These results provide useful information for the hormonal modulation of leaf size and the improvement of leaf growth and production in sesame plants through manipulation of the levels of key regulatory phytohormones.
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Affiliation(s)
- Maryam Mehmood
- Department of Biosciences, COMSATS University Islamabad (CUI), Park Road, Tarlai Kalan, 45550, Islamabad, Pakistan; Department of Evolutionary Biology, Ecology and Environmental Sciences, Faculty of Biology, University of Barcelona, Avinguda Diagonal 643, E-08028, Barcelona, Spain
| | - Marina Pérez-Llorca
- Department of Biosciences, COMSATS University Islamabad (CUI), Park Road, Tarlai Kalan, 45550, Islamabad, Pakistan
| | - Andrea Casadesús
- Department of Evolutionary Biology, Ecology and Environmental Sciences, Faculty of Biology, University of Barcelona, Avinguda Diagonal 643, E-08028, Barcelona, Spain
| | - Sumaira Farrakh
- Department of Biosciences, COMSATS University Islamabad (CUI), Park Road, Tarlai Kalan, 45550, Islamabad, Pakistan
| | - Sergi Munné-Bosch
- Department of Evolutionary Biology, Ecology and Environmental Sciences, Faculty of Biology, University of Barcelona, Avinguda Diagonal 643, E-08028, Barcelona, Spain; Institute of Nutrition and Food Safety (INSA), University of Barcelona, Avinguda Diagonal 643, E-08028, Barcelona, Spain.
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36
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Advances in the Molecular Mechanisms of Abscisic Acid and Gibberellins Functions in Plants. Int J Mol Sci 2021; 22:ijms22116080. [PMID: 34199940 PMCID: PMC8200236 DOI: 10.3390/ijms22116080] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Download PDF] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/25/2021] [Revised: 05/28/2021] [Accepted: 05/31/2021] [Indexed: 12/05/2022] Open
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López-Hinojosa M, de María N, Guevara MA, Vélez MD, Cabezas JA, Díaz LM, Mancha JA, Pizarro A, Manjarrez LF, Collada C, Díaz-Sala C, Cervera Goy MT. Rootstock effects on scion gene expression in maritime pine. Sci Rep 2021; 11:11582. [PMID: 34078936 PMCID: PMC8173007 DOI: 10.1038/s41598-021-90672-y] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/27/2020] [Accepted: 05/04/2021] [Indexed: 12/04/2022] Open
Abstract
Pines are the dominant conifers in Mediterranean forests. As long-lived sessile organisms that seasonally have to cope with drought periods, they have developed a variety of adaptive responses. However, during last decades, highly intense and long-lasting drought events could have contributed to decay and mortality of the most susceptible trees. Among conifer species, Pinus pinaster Ait. shows remarkable ability to adapt to different environments. Previous molecular analysis of a full-sib family designed to study drought response led us to find active transcriptional activity of stress-responding genes even without water deprivation in tolerant genotypes. To improve our knowledge about communication between above- and below-ground organs of maritime pine, we have analyzed four graft-type constructions using two siblings as rootstocks and their progenitors, Gal 1056 and Oria 6, as scions. Transcriptomic profiles of needles from both scions were modified by the rootstock they were grafted on. However, the most significant differential gene expression was observed in drought-sensitive Gal 1056, while in drought-tolerant Oria 6, differential gene expression was very much lower. Furthermore, both scions grafted onto drought-tolerant rootstocks showed activation of genes involved in tolerance to abiotic stress, and is most remarkable in Oria 6 grafts where higher accumulation of transcripts involved in phytohormone action, transcriptional regulation, photosynthesis and signaling has been found. Additionally, processes, such as those related to secondary metabolism, were mainly associated with the scion genotype. This study provides pioneering information about rootstock effects on scion gene expression in conifers.
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Affiliation(s)
- M López-Hinojosa
- Departamento de Ecología y Genética Forestal, Centro de Investigación Forestal (CIFOR), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.,Unidad Mixta de Genómica y Ecofisiología Forestal, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (INIA/UPM), Madrid, Spain
| | - N de María
- Departamento de Ecología y Genética Forestal, Centro de Investigación Forestal (CIFOR), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.,Unidad Mixta de Genómica y Ecofisiología Forestal, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (INIA/UPM), Madrid, Spain
| | - M A Guevara
- Departamento de Ecología y Genética Forestal, Centro de Investigación Forestal (CIFOR), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.,Unidad Mixta de Genómica y Ecofisiología Forestal, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (INIA/UPM), Madrid, Spain
| | - M D Vélez
- Departamento de Ecología y Genética Forestal, Centro de Investigación Forestal (CIFOR), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.,Unidad Mixta de Genómica y Ecofisiología Forestal, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (INIA/UPM), Madrid, Spain
| | - J A Cabezas
- Departamento de Ecología y Genética Forestal, Centro de Investigación Forestal (CIFOR), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.,Unidad Mixta de Genómica y Ecofisiología Forestal, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (INIA/UPM), Madrid, Spain
| | - L M Díaz
- Departamento de Ecología y Genética Forestal, Centro de Investigación Forestal (CIFOR), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.,Unidad Mixta de Genómica y Ecofisiología Forestal, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (INIA/UPM), Madrid, Spain
| | - J A Mancha
- Departamento de Ecología y Genética Forestal, Centro de Investigación Forestal (CIFOR), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.,Unidad Mixta de Genómica y Ecofisiología Forestal, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (INIA/UPM), Madrid, Spain
| | - A Pizarro
- Departamento de Ciencias de la Vida, Universidad de Alcalá (UAH), Alcalá de Henares, Spain
| | - L F Manjarrez
- Departamento de Ecología y Genética Forestal, Centro de Investigación Forestal (CIFOR), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain.,Unidad Mixta de Genómica y Ecofisiología Forestal, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (INIA/UPM), Madrid, Spain
| | - C Collada
- Unidad Mixta de Genómica y Ecofisiología Forestal, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (INIA/UPM), Madrid, Spain.,Departamento de Sistemas y Recursos Naturales, E.T.S.I. Montes, Forestal y Medio Natural, Universidad Politécnica de Madrid (UPM), Madrid, Spain
| | - C Díaz-Sala
- Departamento de Ciencias de la Vida, Universidad de Alcalá (UAH), Alcalá de Henares, Spain
| | - M T Cervera Goy
- Departamento de Ecología y Genética Forestal, Centro de Investigación Forestal (CIFOR), Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA), Madrid, Spain. .,Unidad Mixta de Genómica y Ecofisiología Forestal, Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (INIA/UPM), Madrid, Spain.
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Ahmad F, Kamal A, Singh A, Ashfaque F, Alamri S, Siddiqui MH, Khan MIR. Seed priming with gibberellic acid induces high salinity tolerance in Pisum sativum through antioxidants, secondary metabolites and up-regulation of antiporter genes. PLANT BIOLOGY (STUTTGART, GERMANY) 2021; 23 Suppl 1:113-121. [PMID: 32989871 DOI: 10.1111/plb.13187] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 08/19/2020] [Accepted: 09/20/2020] [Indexed: 06/11/2023]
Abstract
Salinity is one of the major abiotic stresses that limit productivity of pulse crops all over the world. Seed priming with phytohormone(s) is one of the most promising, authentic and cost-effective methods to mitigate the deleterious effect of salinity. The study was conducted to investigate potential of seed priming with gibberellic acid (GA3 ) to cope up with the adverse effects of salinity (0, 100, 200 and 300 mm NaCl) in pea (Pisum sativum L.) seedlings. There were different responses to salinity, which induced oxidative stress, higher accumulation of Na+ in shoots and roots and inhibition of photosynthetic traits. However, seed priming with GA3 showed promising effects on physiological traits under salinity stress and alleviated the adverse effects of salinity by inducing the antioxidant system, proline production, total phenol and flavonoid content and regulating ion homeostasis, along with up-regulation of Na+ /H+ antiporters (SOS1 and NHX1). Plants adapt and prevent high salt accumulation by inducing expression of Na+ /H+ antiporter (SOS1 and NHX1) proteins that enhance Na+ sequestration. Thus, seed priming with GA3 is important in alleviation of high salinity stress and can be used as a criterion for developing salt-tolerant cultivars.
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Affiliation(s)
- F Ahmad
- Department of Bioengineering, Integral University, Lucknow, India
| | - A Kamal
- Department of Bioengineering, Integral University, Lucknow, India
| | - A Singh
- Department of Bioengineering, Integral University, Lucknow, India
| | - F Ashfaque
- Department of Botany, Aligarh Muslim University, Aligarh, India
| | - S Alamri
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - M H Siddiqui
- Department of Botany and Microbiology, College of Science, King Saud University, Riyadh, Saudi Arabia
| | - M I R Khan
- Department of Botany, School of Chemical and Life Sciences, Jamia Hamdard, New Delhi, India
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Bhaskar A, Paul LK, Sharma E, Jha S, Jain M, Khurana JP. OsRR6, a type-A response regulator in rice, mediates cytokinin, light and stress responses when over-expressed in Arabidopsis. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 161:98-112. [PMID: 33581623 DOI: 10.1016/j.plaphy.2021.01.047] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/09/2020] [Accepted: 01/28/2021] [Indexed: 05/27/2023]
Abstract
Plants have evolved a complex network of components that sense and respond to diverse signals. In the present study, we have characterized OsRR6, a type-A response regulator, which is part of the two-component sensor-regulator machinery in rice. The expression of OsRR6 is induced by exogenous cytokinin and various abiotic stress treatments, including drought, cold and salinity stress. Organ-specific expression analysis revealed that its expression is high in anther and low in shoot apical meristem. The Arabidopsis plants constitutively expressing OsRR6 (OsRR6OX) exhibited reduced cytokinin sensitivity, adventitious root formation and enhanced anthocyanin accumulation in seeds. OsRR6OX plants were more tolerant to drought and salinity conditions when compared to wild-type. The hypocotyl growth in OsRR6OX seedlings was significantly inhibited under red, far-red and blue-light conditions and also a decline in transcript levels of OsRR6 was observed in rice under the above monochromatic as well as white light treatments. Transcriptome profiling revealed that the genes associated with defense responses and anthocyanin metabolism are up-regulated in OsRR6OX seedlings. Comparative transcriptome analysis showed that the genes associated with phenylpropanoid and triterpenoid biosynthesis are enriched among differentially expressed genes in OsRR6OX seedlings of Arabidopsis, which is in conformity with reanalysis of the transcriptome data performed in rice transgenics for OsRR6. Further, genes like DREB1A/CBF3, COR15A, KIN1, ERD10 and RD29A are significantly upregulated in OsRR6OX seedlings when subjected to ABA and abiotic stress treatments. Thus, a negative regulator of cytokinin signaling, OsRR6, plays a positive role in imparting abiotic stress tolerance.
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Affiliation(s)
- Avantika Bhaskar
- Interdisciplinary Centre for Plant Genomics & Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, 110021, India
| | - Laju K Paul
- Interdisciplinary Centre for Plant Genomics & Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, 110021, India
| | - Eshan Sharma
- Interdisciplinary Centre for Plant Genomics & Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, 110021, India
| | - Sampoornananda Jha
- Central Department of Biotechnology, Institute of Science and Technology, Tribhuvan University, Kathmandu, Nepal
| | - Mukesh Jain
- Interdisciplinary Centre for Plant Genomics & Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, 110021, India; School of Computational & Integrative Sciences, Jawaharlal Nehru University, New Delhi, 110067, India
| | - Jitendra P Khurana
- Interdisciplinary Centre for Plant Genomics & Department of Plant Molecular Biology, University of Delhi South Campus, New Delhi, 110021, India.
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Yoshida T, Yamaguchi-Shinozaki K. Metabolic engineering: Towards water deficiency adapted crop plants. JOURNAL OF PLANT PHYSIOLOGY 2021; 258-259:153375. [PMID: 33609854 DOI: 10.1016/j.jplph.2021.153375] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/01/2020] [Revised: 01/11/2021] [Accepted: 01/13/2021] [Indexed: 06/12/2023]
Abstract
Water deficiency caused by drought is one of the severe environmental conditions limiting plant growth, development, and yield. In this review article, we will summarize the changes in transcription, metabolism, and phytohormones under drought stress conditions and show the key transcription factors in these processes. We will also highlight the recent attempts to enhance stress tolerance without growth retardation and discuss the perspective on the development of stress adapted crops by engineering transcription factors.
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Affiliation(s)
- Takuya Yoshida
- Max-Planck-Institut Für Molekulare Pflanzenphysiologie, 14476, Potsdam-Golm, Germany; Centre of Plant Systems Biology and Biotechnology, 4000, Plovdiv, Bulgaria.
| | - Kazuko Yamaguchi-Shinozaki
- Laboratory of Plant Molecular Physiology, Graduate School of Agricultural and Life Sciences, The University of Tokyo, 113-8657, Tokyo, Japan; Research Institute for Agricultural and Life Sciences, Tokyo University of Agriculture, 156-8502, Tokyo, Japan
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Carvalho V, Gaspar M, Nievola C. Short-term drought triggers defence mechanisms faster than ABA accumulation in the epiphytic bromeliad Acanthostachys strobilacea. PLANT PHYSIOLOGY AND BIOCHEMISTRY : PPB 2021; 160:62-72. [PMID: 33461051 DOI: 10.1016/j.plaphy.2020.12.030] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/16/2020] [Accepted: 12/24/2020] [Indexed: 06/12/2023]
Abstract
Epiphytic bromeliads might experience drought after a few hours without water, which is especially critical during early life stages. Consequently, juvenile epiphytic bromeliads probably rely on short-term activation of drought tolerance strategies, although the biochemical processes involved are still poorly understood. In this study, we aimed to evaluate the short-term drought response of juvenile plants of the epiphytic bromeliad Acanthostachys strobilacea (Schult. & Schult. f.) Klotzsch. We hypothesized that short-term drought would induce the accumulation of abscisic acid (ABA) and secondary messengers such as reactive oxygen and nitrogen species (ROS and RNS, respectively) before the activation of defence mechanisms. Three-month-old plants were transferred from well-watered to dry substrates and stress markers were assessed at 0, 2, 5, 10, 24, 48, and 72 h. Drought caused a 27.3% decrease in relative water content compared to the well-watered control at 72 h. A nearly 5-fold increment in the ABA content occurred at 72 h of stress, which was about two days after the first detection of peaks in RNS levels and defence mechanisms activation. Indeed, ascorbate peroxidase (EC 1.11.1.11) activities and proline content increased after 10 h, whereas after 24 h a higher catalase (EC 1.11.1.6) activity and osmotic adjustment occurred. Oxidative stress markers and photochemical efficiency of photosystem II indicated no significant damage induced by drought. We concluded that defence mechanisms activation during early drought in juvenile A. strobilacea might be regulated initially by ABA-independent pathways and RNS, while ABA-induced responses are triggered at subsequent stages of stress.
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Affiliation(s)
- Victória Carvalho
- Núcleo de Pesquisa em Plantas Ornamentais, Instituto de Botânica de São Paulo, Av. Miguel Estéfano 3687, 04301-902, São Paulo, SP, Brazil.
| | - Marília Gaspar
- Núcleo de Pesquisa em Fisiologia e Bioquímica, Instituto de Botânica de São Paulo, Av. Miguel Estéfano 3687, 04301-902, São Paulo, SP, Brazil.
| | - CatarinaC Nievola
- Núcleo de Pesquisa em Plantas Ornamentais, Instituto de Botânica de São Paulo, Av. Miguel Estéfano 3687, 04301-902, São Paulo, SP, Brazil.
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Abstract
Plants are an important part of nature because as photoautotrophs, they provide a nutrient source for many other living organisms. Due to their sessile nature, to overcome both biotic and abiotic stresses, plants have developed intricate mechanisms for perception of and reaction to these stresses, both on an external level (perception) and on an internal level (reaction). Specific proteins found within cells play crucial roles in stress mitigation by enhancing cellular processes that facilitate the plants survival during the unfavorable conditions. Well before plants are able to synthesize nascent proteins in response to stress, proteins which already exist in the cell can be subjected to an array of posttranslation modifications (PTMs) that permit a rapid response. These activated proteins can, in turn, aid in further stress responses. Different PTMs have different functions in growth and development of plants. Protein phosphorylation, a reversible form of modification has been well elucidated, and its role in signaling cascades is well documented. In this mini-review, we discuss the integration of protein phosphorylation with other components of abiotic stress-responsive pathways including phytohormones and ion homeostasis. Overall, this review demonstrates the high interconnectivity of the stress response system in plants and how readily plants are able to toggle between various signaling pathways in order to survive harsh conditions. Most notably, fluctuations of the cytosolic calcium levels seem to be a linking component of the various signaling pathways.
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Affiliation(s)
- Rebecca Njeri Damaris
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Science, Hubei University, Wuhan, China
| | - Pingfang Yang
- State Key Laboratory of Biocatalysis and Enzyme Engineering, School of Life Science, Hubei University, Wuhan, China.
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Song Y, Liu J, Chen F. Azotobacter chroococcum inoculation can improve plant growth and resistance of maize to armyworm, Mythimna separata even under reduced nitrogen fertilizer application. PEST MANAGEMENT SCIENCE 2020; 76:4131-4140. [PMID: 32706174 DOI: 10.1002/ps.5969] [Citation(s) in RCA: 12] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/18/2020] [Revised: 05/21/2020] [Accepted: 06/24/2020] [Indexed: 06/11/2023]
Abstract
BACKGROUND Nitrogen (N) is essential to crop yield improvement and it can change crops' ability to defend against herbivores. To maximize economic yield, a higher amount of N-fertilizer is often applied than the minimum required. Azotobacter is a good alternative to reduce N fertilizer application. In this study, we studied the yield and secondary defensive chemicals of maize, as well as the response of the key maize insect pest, Mythimna separata, as fed on maize plants inoculated with Azotobacter chroococcum and cultivated at different N fertilizer rates (i.e. the control rate of nitrogen fertilizer (CR), 80%CR and 60%CR) from 2018 to 2019. RESULTS A. chroococcum inoculation just positively increased yield production of maize at 80%CR. Moreover, reduced N-fertilizer application and A. chroococcum inoculation had opposite impacts on the foliar contents of jasmonic acid (JA), isoleucine conjugate of JA (JA-Ile) and DIMBOA in maize, and they both negatively decreased the pupation rate and fecundity, and positively increased the eclosion rate and approximate digestibility (AD) of M. separata (P < 0.05). Furthermore, reduced N-fertilizer application negatively prolonged larval life-span, and decreased pupal weight, relative growth rate (RGR), efficiency of conversion of ingested food (ECI) and efficiency of conversion of digested food (ECD) of M. separata even A. chroococcum inoculation had positive effects on these indexes of M. separata (P < 0.05). CONCLUSION These results help in understanding of the effects of low-level N-fertilizer and A. chroococcum inoculation on maize production and maize resistance to insects. This will be conducive to the integrated control of agricultural pests. © 2020 Society of Chemical Industry.
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Affiliation(s)
- Yingying Song
- Department of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing, China
| | - Jiawen Liu
- Department of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing, China
| | - Fajun Chen
- Department of Entomology, College of Plant Protection, Nanjing Agricultural University, Nanjing, China
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Iftikhar A, Rizwan M, Adrees M, Ali S, Ur Rehman MZ, Qayyum MF, Hussain A. Effect of gibberellic acid on growth, biomass, and antioxidant defense system of wheat (Triticum aestivum L.) under cerium oxide nanoparticle stress. ENVIRONMENTAL SCIENCE AND POLLUTION RESEARCH INTERNATIONAL 2020; 27:33809-33820. [PMID: 32535824 DOI: 10.1007/s11356-020-09661-9] [Citation(s) in RCA: 17] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/17/2020] [Accepted: 06/08/2020] [Indexed: 05/25/2023]
Abstract
Recently nanoparticles (NPs) are ubiquitous in the environment because they have unique characteristics which are the reason of their wide use in various fields. The release of NPs into various environmental compartments mainly ends up in the soil through water bodies which is a serious threat to living things especially plants. When present in soil, NPs may cause toxicity in plants which increase significance to minimize NPs stress in plants. Although gibberellic acid (GA) is one of the phytohormones that has the potential to alleviate abiotic/biotic stresses in crops plant, GA-mediated alleviation of cerium oxide (CeO2) NPs in plants is still unknown, despite the large-scale application of CeO2-NPs in various fields. The present study was performed to highlight the ability of foliar-applied GA in reducing CeO2-NPs toxicity in wheat under soil exposure of CeO2-NPs. We observed that CeO2-NPs alone adversely affected the dry weights, chlorophyll contents, and nutrients and caused oxidative stress in plants, thereby reducing plant yield. GA coupled with CeO2-NPs reversed the changes caused by CeO2-NPs alone as indicated by the increase in plant growth, chlorophylls, nutrients, and yield. Furthermore, GA alleviated the oxidative stress in plants by enhancing antioxidant enzyme activities under CeO2-NPs exposure than the NPs alone which further provided the evidence of reduction in oxidative damage in plants by GA. Overall, evaluating the potential of GA in reducing CeO2-NPs toxicity in wheat could provide important information for improving food safety under CeO2-NPs exposure.
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Affiliation(s)
- Azka Iftikhar
- Department of Environmental Sciences and Engineering, Government College University, Faisalabad, 38000, Pakistan
| | - Muhammad Rizwan
- Department of Environmental Sciences and Engineering, Government College University, Faisalabad, 38000, Pakistan.
| | - Muhammad Adrees
- Department of Environmental Sciences and Engineering, Government College University, Faisalabad, 38000, Pakistan
| | - Shafaqat Ali
- Department of Environmental Sciences and Engineering, Government College University, Faisalabad, 38000, Pakistan.
- Department of Biological Sciences and Technology, China Medical University, Taichung, 40402, Taiwan.
| | - Muhammad Zia Ur Rehman
- Institute of Soil and Environmental Sciences, University of Agriculture Faisalabad, Faisalabad, Pakistan
| | - Muhammad Farooq Qayyum
- Department of Soil Science, Faculty of Agricultural Sciences & Technology, Bahauddin Zakariya University, Multan, Pakistan
| | - Afzal Hussain
- Department of Environmental Sciences and Engineering, Government College University, Faisalabad, 38000, Pakistan
- Department of the Environmental Sciences, The University of Lahore, Lahore, 54000, Pakistan
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de María N, Guevara MÁ, Perdiguero P, Vélez MD, Cabezas JA, López‐Hinojosa M, Li Z, Díaz LM, Pizarro A, Mancha JA, Sterck L, Sánchez‐Gómez D, Miguel C, Collada C, Díaz‐Sala MC, Cervera MT. Molecular study of drought response in the Mediterranean conifer Pinus pinaster Ait.: Differential transcriptomic profiling reveals constitutive water deficit-independent drought tolerance mechanisms. Ecol Evol 2020; 10:9788-9807. [PMID: 33005345 PMCID: PMC7520194 DOI: 10.1002/ece3.6613] [Citation(s) in RCA: 10] [Impact Index Per Article: 2.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/21/2020] [Revised: 06/19/2020] [Accepted: 06/29/2020] [Indexed: 12/27/2022] Open
Abstract
Adaptation of long-living forest trees to respond to environmental changes is essential to secure their performance under adverse conditions. Water deficit is one of the most significant stress factors determining tree growth and survival. Maritime pine (Pinus pinaster Ait.), the main source of softwood in southwestern Europe, is subjected to recurrent drought periods which, according to climate change predictions for the years to come, will progressively increase in the Mediterranean region. The mechanisms regulating pine adaptive responses to environment are still largely unknown. The aim of this work was to go a step further in understanding the molecular mechanisms underlying maritime pine response to water stress and drought tolerance at the whole plant level. A global transcriptomic profiling of roots, stems, and needles was conducted to analyze the performance of siblings showing contrasted responses to water deficit from an ad hoc designed full-sib family. Although P. pinaster is considered a recalcitrant species for vegetative propagation in adult phase, the analysis was conducted using vegetatively propagated trees exposed to two treatments: well-watered and moderate water stress. The comparative analyses led us to identify organ-specific genes, constitutively expressed as well as differentially expressed when comparing control versus water stress conditions, in drought-sensitive and drought-tolerant genotypes. Different response strategies can point out, with tolerant individuals being pre-adapted for coping with drought by constitutively expressing stress-related genes that are detected only in latter stages on sensitive individuals subjected to drought.
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Affiliation(s)
- Nuria de María
- Departamento de Ecología y Genética ForestalCentro de Investigación Forestal (CIFOR)Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)MadridSpain
- Unidad Mixta de Genómica y Ecofisiología ForestalInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (UPM)MadridSpain
| | - María Ángeles Guevara
- Departamento de Ecología y Genética ForestalCentro de Investigación Forestal (CIFOR)Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)MadridSpain
- Unidad Mixta de Genómica y Ecofisiología ForestalInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (UPM)MadridSpain
| | - Pedro Perdiguero
- Departamento de Ecología y Genética ForestalCentro de Investigación Forestal (CIFOR)Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)MadridSpain
- Centro de Investigación en Sanidad Animal (CISA‐INIA)MadridSpain
- Departamento de Cultivos HerbáceosCentro de Investigación Agroforestal de AlbaladejitoCuencaSpain
| | - María Dolores Vélez
- Departamento de Ecología y Genética ForestalCentro de Investigación Forestal (CIFOR)Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)MadridSpain
- Unidad Mixta de Genómica y Ecofisiología ForestalInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (UPM)MadridSpain
| | - José Antonio Cabezas
- Departamento de Ecología y Genética ForestalCentro de Investigación Forestal (CIFOR)Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)MadridSpain
- Unidad Mixta de Genómica y Ecofisiología ForestalInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (UPM)MadridSpain
| | - Miriam López‐Hinojosa
- Departamento de Ecología y Genética ForestalCentro de Investigación Forestal (CIFOR)Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)MadridSpain
- Unidad Mixta de Genómica y Ecofisiología ForestalInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (UPM)MadridSpain
| | - Zhen Li
- Ghent University Department of Plant Biotechnology and BioinformaticsGhentBelgium
- VIB‐UGent Center for Plant Systems BiologyGhentBelgium
- Bioinformatics Institute GhentGhent UniversityGhentBelgium
| | - Luís Manuel Díaz
- Departamento de Ecología y Genética ForestalCentro de Investigación Forestal (CIFOR)Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)MadridSpain
- Unidad Mixta de Genómica y Ecofisiología ForestalInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (UPM)MadridSpain
| | - Alberto Pizarro
- Departamento de Ciencias de la VidaUniversidad de AlcaláAlcalá de HenaresSpain
| | - José Antonio Mancha
- Departamento de Ecología y Genética ForestalCentro de Investigación Forestal (CIFOR)Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)MadridSpain
| | - Lieven Sterck
- Ghent University Department of Plant Biotechnology and BioinformaticsGhentBelgium
- VIB‐UGent Center for Plant Systems BiologyGhentBelgium
- Bioinformatics Institute GhentGhent UniversityGhentBelgium
| | - David Sánchez‐Gómez
- Departamento de Ecología y Genética ForestalCentro de Investigación Forestal (CIFOR)Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)MadridSpain
- Unidad Mixta de Genómica y Ecofisiología ForestalInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (UPM)MadridSpain
- Departamento de Cultivos HerbáceosCentro de Investigación Agroforestal de AlbaladejitoCuencaSpain
| | - Célia Miguel
- BioISI‐Biosystems & Integrative Sciences InstituteFaculdade de CiênciasUniversidade de LisboaLisboaPortugal
- Instituto de Biologia Experimental e Tecnológica (iBET)OeirasPortugal
| | - Carmen Collada
- Unidad Mixta de Genómica y Ecofisiología ForestalInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (UPM)MadridSpain
- Grupo de investigación Sistemas Naturales e Historia ForestalUPMMadridSpain
| | | | - María Teresa Cervera
- Departamento de Ecología y Genética ForestalCentro de Investigación Forestal (CIFOR)Instituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)MadridSpain
- Unidad Mixta de Genómica y Ecofisiología ForestalInstituto Nacional de Investigación y Tecnología Agraria y Alimentaria (INIA)/Universidad Politécnica de Madrid (UPM)MadridSpain
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Salem MA, Yoshida T, Perez de Souza L, Alseekh S, Bajdzienko K, Fernie AR, Giavalisco P. An improved extraction method enables the comprehensive analysis of lipids, proteins, metabolites and phytohormones from a single sample of leaf tissue under water-deficit stress. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 103:1614-1632. [PMID: 32378781 DOI: 10.1111/tpj.14800] [Citation(s) in RCA: 38] [Impact Index Per Article: 9.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 03/08/2019] [Revised: 04/13/2020] [Accepted: 04/20/2020] [Indexed: 05/20/2023]
Abstract
Phytohormones play essential roles in the regulation of growth and development in plants. Plant hormone profiling is therefore essential to understand developmental processes and the adaptation of plants to biotic and/or abiotic stresses. Interestingly, commonly used hormone extraction and profiling methods do not adequately resolve other molecular entities, such as polar metabolites, lipids, starch and proteins, which would be required to comprehensively describe the continuing biological processes at a systematic level. In this article we introduce an updated version of a previously published liquid:liquid metabolite extraction protocol, which not only allows for the profiling of primary and secondary metabolites, lipids, starch and proteins, but also enables the quantitative analysis of the major plant hormone classes, including abscisic acid, auxins, cytokinins, jasmonates and salicylates, from a single sample aliquot. The optimization of the method, which uses the introduction of acidified water, enabling the complete purification of major plant hormones into the organic (methyl-tert-butyl-ether) phase, eliminated the need for solid-phase extraction for sample clean-up, and therefore reduces both sampling time and cost. As a proof-of-concept analysis, Arabidopsis thaliana plants were subjected to water-deficit stress, which were then profiled for hormonal, metabolic, lipidomic and proteomic changes. Surprisingly, we determined not only previously described molecular changes but also significant changes regarding the breakdown of specific galactolipids, followed by the substantial accumulation of unsaturated fatty-acid derivatives and diverse jasmonates in the course of adaptation to water-deficit stress.
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Affiliation(s)
- Mohamed A Salem
- Department of Pharmacognosy, Faculty of Pharmacy, Menoufia University, Gamal Abd El Nasr St, Shibin Elkom, Menoufia, 32511, Egypt
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm, 14476, Germany
| | - Takuya Yoshida
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm, 14476, Germany
| | - Leonardo Perez de Souza
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm, 14476, Germany
| | - Saleh Alseekh
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm, 14476, Germany
- Center of Plant Systems Biology and Biotechnology, Plovdiv, 4000, Bulgaria
| | - Krzysztof Bajdzienko
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm, 14476, Germany
| | - Alisdair R Fernie
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm, 14476, Germany
| | - Patrick Giavalisco
- Max Planck Institute of Molecular Plant Physiology, Am Mühlenberg 1, Potsdam-Golm, 14476, Germany
- Max Planck Institute for Biology of Ageing, Joseph Stelzmann Str. 9b, Cologne, 50931, Germany
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Maruyama K, Urano K, Kusano M, Sakurai T, Takasaki H, Kishimoto M, Yoshiwara K, Kobayashi M, Kojima M, Sakakibara H, Saito K, Shinozaki K. Metabolite/phytohormone-gene regulatory networks in soybean organs under dehydration conditions revealed by integration analysis. THE PLANT JOURNAL : FOR CELL AND MOLECULAR BIOLOGY 2020; 103:197-211. [PMID: 32072682 PMCID: PMC7384127 DOI: 10.1111/tpj.14719] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/11/2019] [Revised: 01/22/2020] [Accepted: 01/29/2020] [Indexed: 05/21/2023]
Abstract
Metabolites, phytohormones, and genes involved in dehydration responses/tolerance have been predicted in several plants. However, metabolite/phytohormone-gene regulatory networks in soybean organs under dehydration conditions remain unclear. Here, we analyzed the organ specificity of metabolites, phytohormones, and gene transcripts and revealed the characteristics of their regulatory networks in dehydration-treated soybeans. Our metabolite/phytohormone analysis revealed the accumulation of raffinose, trehalose, and cis-zeatin (cZ) specifically in dehydration-treated roots. In dehydration-treated soybeans, raffinose, and trehalose might have additional roles not directly involved in protecting the photosynthetic apparatus; cZ might contribute to root elongation for water uptake from the moisture region in soil. Our integration analysis of metabolites-genes indicated that galactinol, raffinose, and trehalose levels were correlated with transcript levels for key enzymes (galactinol synthase, raffinose synthase, trehalose 6-phosphate synthase, trehalose 6-phosphate phosphatase) at the level of individual plants but not at the organ level under dehydration. Genes encoding these key enzymes were expressed in mainly the aerial parts of dehydration-treated soybeans. These results suggested that raffinose and trehalose are transported from aerial plant parts to the roots in dehydration-treated soybeans. Our integration analysis of phytohormones-genes indicated that cZ and abscisic acid (ABA) levels were correlated with transcript levels for key enzymes (cytokinin nucleoside 5'-monophosphate phosphoribohydrolase, cytokinin oxidases/dehydrogenases, 9-cis-epoxycarotenoid dioxygenase) at the level of individual plants but not at the organ level under dehydration conditions. Therefore, processes such as ABA and cZ transport, among others, are important for the organ specificity of ABA and cZ production under dehydration conditions.
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Affiliation(s)
- Kyonoshin Maruyama
- Biological Resources and Post‐Harvest DivisionJapan International Research Center for Agricultural SciencesTsukubaIbaraki305‐8686Japan
| | - Kaoru Urano
- RIKEN Center for Sustainable Resource Science3‐1‐1 KoyadaiTsukubaIbaraki305‐0074Japan
| | - Miyako Kusano
- Graduate School of Life and Environmental SciencesUniversity of TsukubaTsukuba305‐8572Japan
| | - Tetsuya Sakurai
- Interdisciplinary Science UnitMultidisciplinary Science Cluster, Research and Education FacultyKochi University200 Otsu, MonobeNankokuKochi783‐8502Japan
- RIKEN Center for Sustainable Resource Science1‐7‐22 Suehiro, TsurumiYokohama230‐0045Japan
| | - Hironori Takasaki
- Graduate School of Science and EngineeringSaitama UniversityShimo‐Okubo 255, SakuraSaitama338‐8570Japan
| | - Miho Kishimoto
- Biological Resources and Post‐Harvest DivisionJapan International Research Center for Agricultural SciencesTsukubaIbaraki305‐8686Japan
| | - Kyouko Yoshiwara
- Biological Resources and Post‐Harvest DivisionJapan International Research Center for Agricultural SciencesTsukubaIbaraki305‐8686Japan
| | - Makoto Kobayashi
- RIKEN Center for Sustainable Resource Science1‐7‐22 Suehiro, TsurumiYokohama230‐0045Japan
| | - Mikiko Kojima
- RIKEN Center for Sustainable Resource Science1‐7‐22 Suehiro, TsurumiYokohama230‐0045Japan
| | - Hitoshi Sakakibara
- RIKEN Center for Sustainable Resource Science1‐7‐22 Suehiro, TsurumiYokohama230‐0045Japan
- Graduate School of Bioagricultural SciencesNagoya UniversityChikusa, Nagoya464‐8601Japan
| | - Kazuki Saito
- RIKEN Center for Sustainable Resource Science1‐7‐22 Suehiro, TsurumiYokohama230‐0045Japan
- Graduate School of Pharmaceutical SciencesChiba UniversityChiba260‐8675Japan
| | - Kazuo Shinozaki
- RIKEN Center for Sustainable Resource Science3‐1‐1 KoyadaiTsukubaIbaraki305‐0074Japan
- RIKEN Center for Sustainable Resource Science1‐7‐22 Suehiro, TsurumiYokohama230‐0045Japan
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Early Drought-Responsive Genes Are Variable and Relevant to Drought Tolerance. G3-GENES GENOMES GENETICS 2020; 10:1657-1670. [PMID: 32161086 PMCID: PMC7202030 DOI: 10.1534/g3.120.401199] [Citation(s) in RCA: 5] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/19/2023]
Abstract
Drought stress is an important crop yield limiting factor worldwide. Plant physiological responses to drought stress are driven by changes in gene expression. While drought-responsive genes (DRGs) have been identified in maize, regulation patterns of gene expression during progressive water deficits remain to be elucidated. In this study, we generated time-series transcriptomic data from the maize inbred line B73 under well-watered and drought conditions. Comparisons between the two conditions identified 8,626 DRGs and the stages (early, middle, and late drought) at which DRGs occurred. Different functional groups of genes were regulated at the three stages. Specifically, early and middle DRGs display higher copy number variation among diverse Zea mays lines, and they exhibited stronger associations with drought tolerance as compared to late DRGs. In addition, correlation of expression between small RNAs (sRNAs) and DRGs from the same samples identified 201 negatively sRNA/DRG correlated pairs, including genes showing high levels of association with drought tolerance, such as two glutamine synthetase genes, gln2 and gln6 The characterization of dynamic gene responses to progressive drought stresses indicates important adaptive roles of early and middle DRGs, as well as roles played by sRNAs in gene expression regulation upon drought stress.
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Zhang Y, Fu Y, Wang Q, Liu X, Li Q, Chen J. Transcriptome analysis reveals rapid defence responses in wheat induced by phytotoxic aphid Schizaphis graminum feeding. BMC Genomics 2020; 21:339. [PMID: 32366323 PMCID: PMC7199342 DOI: 10.1186/s12864-020-6743-5] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2019] [Accepted: 04/20/2020] [Indexed: 01/04/2023] Open
Abstract
BACKGROUND Schizaphis graminum is one of the most important and devastating cereal aphids worldwide, and its feeding can cause chlorosis and necrosis in wheat. However, little information is available on the wheat defence responses triggered by S. graminum feeding at the molecular level. RESULTS Here, we collected and analysed transcriptome sequencing data from leaf tissues of wheat infested with S. graminum at 2, 6, 12, 24 and 48 hpi (hours post infestation). A total of 44,835 genes were either up- or downregulated and differed significantly in response to aphid feeding. The expression levels of a number of genes (9761 genes) were significantly altered within 2 hpi and continued to change during the entire 48 h experiment. Gene Ontology analysis showed that the downregulated DEGs were mainly enriched in photosynthesis and light harvesting, and the total chlorophyll content in wheat leaves was also significantly reduced after S. graminum infestation at 24 and 48 hpi. However, a number of related genes of the salicylic acid (SA)-mediated defence signalling pathway and MAPK-WRKY pathway were significantly upregulated at early feeding time points (2 and 6 hpi). In addition, the gene expression and activity of antioxidant enzymes, such as peroxidase and superoxide dismutase, were rapidly increased at 2, 6 and 12 hpi. DAB staining results showed that S. graminum feeding induced hydrogen peroxide (H2O2) accumulation at the feeding sites at 2 hpi, and increased H2O2 production was detected with the increases in aphid feeding time. Pretreatment with diphenylene iodonium, an NADPH oxidase inhibitor, repressed the H2O2 accumulation and expression levels of SA-associated defence genes in wheat. CONCLUSIONS Our transcriptomic analysis revealed that defence-related pathways and oxidative stress in wheat were rapidly induced within hours after the initiation of aphid feeding. Additionally, NADPH oxidase plays an important role in aphid-induced defence responses and H2O2 accumulation in wheat. These results provide valuable insight into the dynamic transcriptomic responses of wheat leaves to phytotoxic aphid feeding and the molecular mechanisms of aphid-plant interactions.
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Affiliation(s)
- Yong Zhang
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193 People’s Republic of China
| | - Yu Fu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193 People’s Republic of China
| | - Qian Wang
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193 People’s Republic of China
| | - Xiaobei Liu
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193 People’s Republic of China
| | - Qian Li
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193 People’s Republic of China
| | - Julian Chen
- State Key Laboratory for Biology of Plant Diseases and Insect Pests, Institute of Plant Protection, Chinese Academy of Agricultural Sciences, Beijing, 100193 People’s Republic of China
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Fan Y, Liu J, Zou J, Zhang X, Jiang L, Liu K, Lü P, Gao J, Zhang C. The RhHB1/ RhLOX4 module affects the dehydration tolerance of rose flowers ( Rosa hybrida) by fine-tuning jasmonic acid levels. HORTICULTURE RESEARCH 2020; 7:74. [PMID: 32377364 PMCID: PMC7195446 DOI: 10.1038/s41438-020-0299-z] [Citation(s) in RCA: 6] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 11/21/2019] [Revised: 03/11/2020] [Accepted: 03/16/2020] [Indexed: 05/14/2023]
Abstract
Phytohormones are key factors in plant responsiveness to abiotic and biotic stresses, and maintaining hormone homeostasis is critically important during stress responses. Cut rose (Rosa hybrida) flowers experience dehydration stress during postharvest handling, and jasmonic acid (JA) levels change as a result of this stress. However, how JA is involved in dehydration tolerance remains unclear. We investigated the functions of the JA- and dehydration-induced RhHB1 gene, which encodes a homeodomain-leucine zipper I γ-clade transcription factor, in rose flowers. Silencing RhHB1 decreased petal dehydration tolerance and resulted in a persistent increase in JA-Ile content and reduced dehydration tolerance. An elevated JA-Ile level had a detrimental effect on rose petal dehydration tolerance. RhHB1 was shown to lower the transient induction of JA-Ile accumulation in response to dehydration. In addition to transcriptomic data, we obtained evidence that RhHB1 suppresses the expression of the lipoxygenase 4 (RhLOX4) gene by directly binding to its promoter both in vivo and in vitro. We propose that increased JA-Ile levels weaken the capacity for osmotic adjustment in petal cells, resulting in reduced dehydration tolerance. In conclusion, a JA feedback loop mediated by an RhHB1/RhLOX4 regulatory module provides dehydration tolerance by fine-tuning bioactive JA levels in dehydrated flowers.
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Affiliation(s)
- Youwei Fan
- Department of Ornamental Horticulture, College of Horticulture, China Agricultural University, Beijing, 100193 China
| | - Jitao Liu
- Department of Ornamental Horticulture, College of Horticulture, China Agricultural University, Beijing, 100193 China
- Crop Research Institute, Guangdong Academy of Agricultural Sciences, Guangdong Provincial Key Laboratory of Crop Genetic Improvement, Guangzhou, Guangdong 510642 China
| | - Jing Zou
- Department of Ornamental Horticulture, College of Horticulture, China Agricultural University, Beijing, 100193 China
| | - Xiangyu Zhang
- Department of Ornamental Horticulture, College of Horticulture, China Agricultural University, Beijing, 100193 China
| | - Liwei Jiang
- Department of Ornamental Horticulture, College of Horticulture, China Agricultural University, Beijing, 100193 China
| | - Kun Liu
- Department of Ornamental Horticulture, College of Horticulture, China Agricultural University, Beijing, 100193 China
| | - Peitao Lü
- Department of Ornamental Horticulture, College of Horticulture, China Agricultural University, Beijing, 100193 China
| | - Junping Gao
- Department of Ornamental Horticulture, College of Horticulture, China Agricultural University, Beijing, 100193 China
| | - Changqing Zhang
- Department of Ornamental Horticulture, College of Horticulture, China Agricultural University, Beijing, 100193 China
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