Observations of biogenic ion-induced cluster formation in the atmosphere

Direct Measurements of Covalently Bonded Sulfuric Anhydrides from Gas-Phase Reactions of SO3 with Acids under Ambient Conditions

Sulfur trioxide (SO3) is an important oxide of sulfur and a key intermediate in the formation of sulfuric acid (H2SO4, SA) in the Earth's atmosphere. This conversion to SA occurs rapidly due to the reaction of SO3 with a water dimer. However, gas-phase SO3 has been measured directly at concentrations that are comparable to that of SA under polluted mega-city conditions, indicating gaps in our current understanding of the sources and fates of SO3. Its reaction with atmospheric acids could be one such fate that can have significant implications for atmospheric chemistry. In the present investigation, laboratory experiments were conducted in a flow reactor to generate a range of previously uncharacterized condensable sulfur-containing reaction products by reacting SO3 with a set of atmospherically relevant inorganic and organic acids at room temperature and atmospheric pressure. Specifically, key inorganic acids known to be responsible for most ambient new particle formation events, iodic acid (HIO3, IA) and SA, are observed to react promptly with SO3 to form iodic sulfuric anhydride (IO3SO3H, ISA) and disulfuric acid (H2S2O7, DSA). Carboxylic sulfuric anhydrides (CSAs) were observed to form by the reaction of SO3 with C2 and C3 monocarboxylic (acetic and propanoic acid) and dicarboxylic (oxalic and malonic acid)-carboxylic acids. The formed products were detected by a nitrate-ion-based chemical ionization atmospheric pressure interface time-of-flight mass spectrometer (NO3--CI-APi-TOF; NO3--CIMS). Quantum chemical methods were used to compute the relevant SO3 reaction rate coefficients, probe the reaction mechanisms, and model the ionization chemistry inherent in the detection of the products by NO3--CIMS. Additionally, we use NO3--CIMS ambient data to report that significant concentrations of SO3 and its acid anhydride reaction products are present under polluted, marine and polar, and volcanic plume conditions. Considering that these regions are rich in the acid precursors studied here, the reported reactions need to be accounted for in the modeling of atmospheric new particle formation.

Potential pre-industrial-like new particle formation induced by pure biogenic organic vapors in Finnish peatland

Pure biogenic new particle formation (NPF) induced by highly oxygenated organic molecules (HOMs) could be an important mechanism for pre-industrial aerosol formation. However, it has not been unambiguously confirmed in the ambient due to the scarcity of truly pristine continental locations in the present-day atmosphere or the lack of chemical characterization of NPF precursors. Here, we report ambient observations of pure biogenic HOM-driven NPF over a peatland in southern Finland. Meteorological decoupling processes formed an "air pocket" (i.e., a very shallow surface layer) at night and favored NPF initiated entirely by biogenic HOM from this peatland, whose atmospheric environment closely resembles that of the pre-industrial era. Our study sheds light on pre-industrial aerosol formation, which represents the baseline for estimating the impact of present and future aerosol on climate, as well as on future NPF, the features of which may revert toward pre-industrial-like conditions due to air pollution mitigation.

Data-Driven Compound Identification in Atmospheric Mass Spectrometry

Aerosol particles found in the atmosphere affect the climate and worsen air quality. To mitigate these adverse impacts, aerosol particle formation and aerosol chemistry in the atmosphere need to be better mapped out and understood. Currently, mass spectrometry is the single most important analytical technique in atmospheric chemistry and is used to track and identify compounds and processes. Large amounts of data are collected in each measurement of current time-of-flight and orbitrap mass spectrometers using modern rapid data acquisition practices. However, compound identification remains a major bottleneck during data analysis due to lacking reference libraries and analysis tools. Data-driven compound identification approaches could alleviate the problem, yet remain rare to non-existent in atmospheric science. In this perspective, the authors review the current state of data-driven compound identification with mass spectrometry in atmospheric science and discuss current challenges and possible future steps toward a digital era for atmospheric mass spectrometry.

Nitrate Radicals Suppress Biogenic New Particle Formation from Monoterpene Oxidation

Highly oxygenated organic molecules (HOMs) are a major source of new particles that affect the Earth's climate. HOM production from the oxidation of volatile organic compounds (VOCs) occurs during both the day and night and can lead to new particle formation (NPF). However, NPF involving organic vapors has been reported much more often during the daytime than during nighttime. Here, we show that the nitrate radicals (NO3), which arise predominantly at night, inhibit NPF during the oxidation of monoterpenes based on three lines of observational evidence: NPF experiments in the CLOUD (Cosmics Leaving OUtdoor Droplets) chamber at CERN (European Organization for Nuclear Research), radical chemistry experiments using an oxidation flow reactor, and field observations in a wetland that occasionally exhibits nocturnal NPF. Nitrooxy-peroxy radicals formed from NO3 chemistry suppress the production of ultralow-volatility organic compounds (ULVOCs) responsible for biogenic NPF, which are covalently bound peroxy radical (RO2) dimer association products. The ULVOC yield of α-pinene in the presence of NO3 is one-fifth of that resulting from ozone chemistry alone. Even trace amounts of NO3 radicals, at sub-parts per trillion level, suppress the NPF rate by a factor of 4. Ambient observations further confirm that when NO3 chemistry is involved, monoterpene NPF is completely turned off. Our results explain the frequent absence of nocturnal biogenic NPF in monoterpene (α-pinene)-rich environments.

Evidence of nitrate-based nighttime atmospheric nucleation driven by marine microorganisms in the South Pacific

Our understanding of ocean-cloud interactions and their effect on climate lacks insight into a key pathway: do biogenic marine emissions form new particles in the open ocean atmosphere? Using measurements collected in ship-borne air-sea interface tanks deployed in the Southwestern Pacific Ocean, we identified new particle formation (NPF) during nighttime that was related to plankton community composition. We show that nitrate ions are the only species for which abundance could support NPF rates in our semicontrolled experiments. Nitrate ions also prevailed in the natural pristine marine atmosphere and were elevated under higher sub-10 nm particle concentrations. We hypothesize that these nucleation events were fueled by complex, short-term biogeochemical cycling involving the microbial loop. These findings suggest a new perspective with a previously unidentified role of nitrate of marine biogeochemical origin in aerosol nucleation.

Roles of Amides on the Formation of Atmospheric HONO and the Nucleation of Nitric Acid Hydrates

Nitrous acid (HONO) is hazardous to the human respiratory system, and the hydrolysis of NO₂ is the source of HONO. Hence, the investigation on the removal and transformation of HONO is urgently established. The effects of amide on the mechanism and kinetics of the formation of HONO with acetamide, formamide, methylformamide, urea, and its clusters of the catalyst were studied theoretically. The results show that amide and its small clusters reduce the energy barrier, the substituent improves the catalytic efficiency, and the catalytic effect order is dimer > monohydrate > monomer. Meanwhile, the clusters composed of nitric acid (HNO₃), amides, and 1-6 water molecules were investigated in the amide-assisted nitrogen dioxide (NO₂) hydrolysis reaction after HONO decomposes by combining the system sampling technique and density functional theory. The study on thermodynamics, intermolecular forces, optics properties of the clusters, as well as the influence of humidity, temperature, atmospheric pressure, and altitude shows that amide molecules promote the clustering and enhance the optical properties. The substituent facilitates the clustering of amide and nitric acid hydrate and lowers the humidity sensitivity of the clusters. The findings will help to control the atmospheric aerosol particle and then reduce the harm of poisonous organic chemicals on human health.

New particle formation at a peri-urban agricultural site

New Particle Formation (NPF) is a major source of ultrafine particles that affect both air quality and climate. Despite emissions from agricultural activities having a strong potential to lead to NPF, little is known about NPF within agricultural environments. The aim of the present study was to investigate the occurrence of NPF events at an agricultural site, and any potential relationship between agricultural emissions and NPF events. A field campaign was conducted for 3 months at the FR-Gri-ICOS site (France), at an experimental farm 25 km west of Paris city centre. 16 NPF events have been identified from the analysis of particle number size distributions; 8 during the daytime, and 8 during the night-time. High solar radiation and ozone mixing ratios were observed during the days NPF occurred, suggesting photochemistry plays a key role in daytime NPF. These events were also associated with higher levels of VOCs such as isoprene, methanol, or toluene compared to non-event days. However, ammonia levels were lower during daytime NPF events, contributing to the hypothesis that daytime NPF events were not related to agricultural activities. On the other hand, temperature and ozone were lower during the nights when NPF events were observed, whereas relative humidity was higher. During these nights, higher concentrations of NO₂ and ammonia were observed. As a result, agricultural activities, in particular the spreading of fertiliser on surrounding crops, are suspected to contribute to night-time NPF events. Finally, all the identified NPF events were also observed at SIRTA monitoring station 20 km from the FR-Gri ICOS site, showing that both night-time and daytime NPF events were regional processes. We hypothesise that night-time NPF may be related to fertiliser spreading over a regional scale, as opposed to the local activities at the farm. To our knowledge, this is the first time night-time NPF has been observed in the agricultural context.

Unexpected significance of a minor reaction pathway in daytime formation of biogenic highly oxygenated organic compounds

Secondary organic aerosol (SOA), formed by oxidation of volatile organic compounds, substantially influence air quality and climate. Highly oxygenated organic molecules (HOMs), particularly those formed from biogenic monoterpenes, contribute a large fraction of SOA. During daytime, hydroxyl radicals initiate monoterpene oxidation, mainly by hydroxyl addition to monoterpene double bonds. Naturally, related HOM formation mechanisms should be induced by that reaction route, too. However, for α-pinene, the most abundant atmospheric monoterpene, we find a previously unidentified competitive pathway under atmospherically relevant conditions: HOM formation is predominately induced via hydrogen abstraction by hydroxyl radicals, a generally minor reaction pathway. We show by observations and theoretical calculations that hydrogen abstraction followed by formation and rearrangement of alkoxy radicals is a prerequisite for fast daytime HOM formation. Our analysis provides an accurate mechanism and yield, demonstrating that minor reaction pathways can become major, here for SOA formation and growth and related impacts on air quality and climate.

Amine-Enhanced Methanesulfonic Acid-Driven Nucleation: Predictive Model and Cluster Formation Mechanism

Atmospheric amines are considered to be an effective enhancer for methanesulfonic acid (MSA)-driven nucleation. However, out of the 195 detected atmospheric amines, the enhancing potential (EP) has so far only been studied for five amines. This severely hinders the understanding of the contribution of amines to MSA-driven nucleation. Herein, a two-step procedure was employed to probe the EP of various amines on MSA-driven nucleation. Initially, the formation free energies (ΔG) of 50 MSA-amine dimer clusters were calculated. Based on the calculated ΔG values, a robust quantitative structure-activity relationship (QSAR) model was built and utilized to predict the ΔG values of the remaining 145 amines. The QSAR model identified two guanidino-containing compounds as the potentially strongest enhancer for MSA-driven nucleation. Second, the EP of guanidino-containing compounds was studied by employing larger clusters and selecting guanidine (Gud) as a representative. The results indicate that Gud indeed has the strongest EP. The Gud-MSA system presents a unique clustering mechanism, proceeding via the initial formation of the (Gud)₁(MSA)₁ cluster, and subsequently by cluster collisions with either a (Gud)₁(MSA)₁ or (Gud)₂(MSA)₂ cluster. The developed QSAR model and the identification of amines with the strongest EP provide a foundation for comprehensively evaluating the contribution of atmospheric amines to MSA-driven nucleation.

Organic acid-ammonia ion-induced nucleation pathways unveiled by quantum chemical calculation and kinetics modeling: A case study of 3-methyl-1,2,3-butanetricarboxylic acid

Nucleation of organic acids (OAs) and H₂SO₄ is an important source for new particle formation in the atmosphere. However, it is still unclear whether organic acids can produce nanoparticles independent of H₂SO₄. In this study, 3-methyl-1,2,3-butanetricarboxylic acid (MBTCA) was adopted as a model of OAs. Pathways of clustering from MBTCA, ammonia and ions (NH₄⁺ and NO₃^-) to form a 1.9 nm nucleus were investigated by quantum chemical calculation and kinetic modeling. Results show recombination of charged clusters/ions plays an essential role in the nucleation processes. Cluster formation rates increase by a factor of 10³ when NH₃ increases from 2.6 × 10⁸ molecules·cm^-3 (under clean conditions) to 2.6 × 10¹¹ molecules·cm^-3 (under polluted conditions), as NH₃ can stabilize MBTCA clusters and change ion compositions from H₃O⁺ to NH₄⁺. Although the proposed new mechanism cannot compete with H₂SO₄-NH₃-H₂O or H₂SO₄-OA nucleation currently, it may be important in the future with the decline of SO₂ concentration.

Elucidating the relevance of high temperature and elevated CO2 in plant secondary metabolites (PSMs) production

Plant secondary metabolites (PSMs) are plant products that are discontinuously distributed throughout the plant kingdom. These secondary compounds have various chemical groups and are named according to their chemical constituents. For their ability to defend biotic and abiotic stresses they are considered as plants' defensive compounds. These metabolites take part in plant protection from insects, herbivores, and extreme environmental conditions. They are indirectly involved in plants’ growth and development. Secondary metabolites are also used by people in the form of medicines, pharmaceuticals, agrochemicals, colors, fragrances, flavorings, food additives, biopesticides, and drugs development. However, the increase in atmospheric temperature by several anthropogenic activities majorly by the combustion of hydrocarbons is a great issue now. On the other hand, climate change leaves an impact on the quality and quantity of plant secondary metabolites. It is measured that several greenhouse gases (GHGs) are present in the atmosphere, like Chlorofluorocarbons (CFCs), nitrous oxides (NO_x), Carbon dioxide (CO₂), Methane (CH₄) and Ozone (O₃), etc. CO₂, the major greenhouse gas is essential for photosynthesis. On the other hand, CO₂ plays a significant role in the up-regulation of atmospheric temperature. Plants produce various types of primary metabolites such as carbohydrates, proteins, fats, membrane lipids, nucleic acids, and chlorophyll as well as a variety of secondary metabolites from photosynthesis. The high temperature in the atmosphere creates heat stress for plants. As a matter of fact many morphological, physiological and biochemical changes occur in the plant. The high temperature invariably elicits the production of several secondary metabolites within plants. Various strategies have been universally documented to improve the production of PSMs. With this objective, the focus of the current review is to further investigate and discuss futuristic scenarios the effect of elevated CO₂ and high temperature on PSMs production which may perhaps beneficial for pharmaceutical industries, biotechnology industries, and also in climate change researches.

Toward a Holistic Understanding of the Formation and Growth of Atmospheric Molecular Clusters: A Quantum Machine Learning Perspective

The formation of atmospheric molecular clusters is an important stage in forming new particles in the atmosphere. Despite being a highly focused research area, the exact chemical species involved in the initial steps in new particle formation remain elusive. In this Perspective the main challenges and recent progression in the field are outlined with a special emphasis on the chemical complexity of the puzzle and prospect of modeling larger clusters. In general, there is a high demand for accurate and more complete quantum chemical data sets that can be applied in cluster distribution dynamics models and coupled to atmospheric chemical transport models. A view on how the community could reach this goal by applying data-driven machine learning approaches for more efficient exploration of cluster configurations is presented. A path toward larger clusters and direct molecular dynamics simulations of cluster formation and growth using machine learning models is discussed.

Structural Effects of Amines in Enhancing Methanesulfonic Acid-Driven New Particle Formation

Atmospheric amines can enhance methanesulfonic acid (MSA)-driven new particle formation (NPF), but the mechanism is fundamentally different compared to that of the extensively studied sulfuric acid (SA)-driven process. Generally, the enhancing potentials of amines in SA-driven NPF follow the basicity, while this is not the case for MSA-driven NPF, where structural effects dominate, making MSA-driven NPF more prominent for methylamine (MA) compared to dimethylamine (DMA). Therefore, probing structural factors determining the enhancing potentials of amines on MSA-driven NPF is key to fully understanding the contribution of MSA to NPF. Here, we performed a comparative study on DMA and MA enhancing MSA-driven NPF by examining cluster formation using computational methods. The results indicate that DMA-MSA clusters are more stable than the corresponding MA-MSA clusters for cluster sizes up to (DMA)₂(MSA)₂, indicating that the basicity of amines dominates the initial cluster formation. The methyl groups of DMA were found to present significant steric hindrance beyond the (DMA)₂(MSA)₂ cluster and this adds to the lower hydrogen bonding capacity of DMA, making the cluster growth less favorable compared to MA. This study implies that several amines could synergistically enhance MSA-driven NPF by maximizing the advantage of different amines in different amine-MSA cluster growth stages.

Sources and formation of nucleation mode particles in remote tropical marine atmospheres over the South China Sea and the Northwest Pacific Ocean

A fast mobility particle sizer operating at a one-second time resolution was used to measure aerosol particle number size distribution (5.6-560 nm) in marine conditions over the South China Sea (SCS) from 29 March to 2 May 2017 and in the tropic zone of the Northwest Pacific Ocean (NWPO) from 10 to 29 October 2018. The clean background number concentration of nucleation mode atmospheric particles (<30 nm) was approximately 0.6 × 10³ cm^-3 in these areas. Two nighttime and five daytime strong new particle formation (NPF) events were observed to occur extending over a spatial scale from 2 to 140 km in the SCS, with a net increase of nucleation mode particles of 4.5 × 10⁴ cm^-3 ± 3.4 × 10⁴ cm^-3 during five of the seven events. Nighttime NPF events were unlikely associated with sulfuric acid vapor because of lack of photochemical reactions. Daytime NPF events share several common features with nighttime NPF events, e.g., dramatic spatiotemporal variations in the number concentration of the nucleation mode particles. Without aerosol precursor measurements we cannot address the vapors driving the formation process. However, our results show no banana-shaped growth of the particles. The growth into larger particle sizes seems to be restricted by the availability of condensable components in the gas phase. The nucleation mode was observed and sometimes even dominated the number concentration over other particle modes in the marine atmosphere over the tropic zone of the NWPO. In addition, more data obtained during the two campaigns and other campaigns were also applied to strengthen the analysis in terms of origins, formation and absent growth of nucleation mode particles in the marine atmospheres over the two tropic zones.

Methanesulfonic Acid-driven New Particle Formation Enhanced by Monoethanolamine: A Computational Study

Amines are recognized as significant enhancing species on methanesulfonic acid (MSA)-driven new particle formation (NPF). Monoethanolamine (MEA) has been detected in the atmosphere, and its concentration could be significantly increased once MEA-based postcombustion CO₂ capture technology is widely implemented. Here, we evaluated the enhancing potential of MEA on MSA-driven NPF by examining the formation of MEA-MSA clusters using a combination of quantum chemical calculations and kinetics modeling. The results indicate that the -OH group of MEA can form at least one hydrogen bond with MSA or MEA in all MEA-containing clusters. The enhancing potential of MEA is higher than that of the strongest enhancing agent known so far, methylamine (MA), for MSA-driven NPF. Such high enhancing potential can be ascribed to not only the higher gas-phase basicity but also the role of the additional -OH group of MEA in increasing the binding free energy by forming additional hydrogen bonds. This clarifies the importance of hydrogen-bonding capacity from the nonamino group of amines in enhancing MSA-driven NPF. The main growth pathway for MEA-MSA clusters proceeds via the initial formation of the (MEA)₁(MSA)₁ cluster, followed by alternately adding one MSA and one MEA molecule, differing from the case of MA-MSA clusters.

Enhancement of Atmospheric Nucleation by Highly Oxygenated Organic Molecules: A Density Functional Theory Study

New particle formation (NPF) by gas-particle conversion is the main source of atmospheric aerosols. Highly oxygenated organic molecules (HOMs) and sulfuric acid (SA) are important NPF participants. 2-Methylglyceric acid (MGA), a kind of HOMs, is a tracer of isoprene-derived secondary organic aerosols. The nucleation mechanisms of MGA with SA were studied using density functional theory and atmospheric cluster dynamics simulation in this study, along with that of MGA with methanesulfonic acid (MSA) as a comparison. Our theoretical works indicate that the (MGA)(SA) and (MGA)(MSA) clusters are the most stable ones in the (MGA) _i(SA) _j ( i = 1-2, j = 1-2) and (MGA) _i(MSA) _j ( i = 1-2, j = 1-2) clusters, respectively. Both the formation rates of (MGA)(SA) and (MGA)(MSA) clusters are quite large and could have significant contributions to NPF. The results imply that the homomolecular nucleation of MGA is unlikely to occur in the atmosphere, and MGA and SA can effectively contribute to heteromolecular nucleation mainly in the form of heterodimers. MSA exhibits properties similar to SA in its ability to form clusters with MGA but is slightly weaker than SA.

Highly Oxygenated Organic Molecules (HOM) from Gas-Phase Autoxidation Involving Peroxy Radicals: A Key Contributor to Atmospheric Aerosol

Highly oxygenated organic molecules (HOM) are formed in the atmosphere via autoxidation involving peroxy radicals arising from volatile organic compounds (VOC). HOM condense on pre-existing particles and can be involved in new particle formation. HOM thus contribute to the formation of secondary organic aerosol (SOA), a significant and ubiquitous component of atmospheric aerosol known to affect the Earth’s radiation balance. HOM were discovered only very recently, but the interest in these compounds has grown rapidly. In this Review, we define HOM and describe the currently available techniques for their identification/quantification, followed by a summary of the current knowledge on their formation mechanisms and physicochemical properties. A main aim is to provide a common frame for the currently quite fragmented literature on HOM studies. Finally, we highlight the existing gaps in our understanding and suggest directions for future HOM research.

Climate Change Effects on Secondary Compounds of Forest Trees in the Northern Hemisphere

Plant secondary compounds (PSCs), also called secondary metabolites, have high chemical and structural diversity and appear as non-volatile or volatile compounds. These compounds may have evolved to have specific physiological and ecological functions in the adaptation of plants to their growth environment. PSCs are produced by several metabolic pathways and many PSCs are specific for a few plant genera or families. In forest ecosystems, full-grown trees constitute the majority of plant biomass and are thus capable of producing significant amounts of PSCs. We summarize older literature and review recent progress in understanding the effects of abiotic and biotic factors on PSC production of forest trees and PSC behavior in forest ecosystems. The roles of different PSCs under stress and their important role in protecting plants against abiotic and biotic factors are also discussed. There was strong evidence that major climate change factors, CO2 and warming, have contradictory effects on the main PSC groups. CO2 increases phenolic compounds in foliage, but limits terpenoids in foliage and emissions. Warming decreases phenolic compounds in foliage but increases terpenoids in foliage and emissions. Other abiotic stresses have more variable effects. PSCs may help trees to adapt to a changing climate and to pressure from current and invasive pests and pathogens. Indirect adaptation comes via the effects of PSCs on soil chemistry and nutrient cycling, the formation of cloud condensation nuclei from tree volatiles and by CO2 sequestration into PSCs in the wood of living and dead forest trees.