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Longo L, Lima T, Bila MC, Brogin J, Faber J. A minimalist computational model of slice hippocampal circuitry based on Neuronify for teaching neuroscience. PLoS One 2025; 20:e0319641. [PMID: 40300031 PMCID: PMC12040273 DOI: 10.1371/journal.pone.0319641] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/08/2024] [Accepted: 02/05/2025] [Indexed: 05/01/2025] Open
Abstract
The hippocampal formation is vital for processing memory, learning, and spatial navigation. Existing methods are obsolete to address new emerging questions as our understanding of hippocampal circuits and its connections advances. Hence, new techniques with an accessible approach for visualizing and understanding its inner connections and circuitry are needed. Research requires a quick update of textbooks and a better integration of new media to facilitate the teaching of these neural structures. For instance, pictures and diagrams are not enough to fully express the structural and functional effects that each neural circuit imparts. Computational models adapted to these diverse contexts might be a possible solution for such challenge. The construction of minimalist computational models can be an excellent alternative in teaching complex dynamics since they reduce the use of animal models, amplify and simplify structural relationships, promote quick and easy visualization, and uncover possible functional and structural interventions with an educational goal. This interactivity is crucial for a better understanding of the causal relationships between nuclei and neural circuits. Conversely, it is important that those models are simple enough so that any student, regardless of their mathematical background, can understand and manipulate features of interest. Further, software packages that do not require programming knowledge for its use are indispensable, even though this limitation also restricts the representations possible for study. Here, we demonstrate the use of Neuronify software, which uses simple functional representations of neurons and circuits. We represent the most important pathways and connections of the hippocampal formation by building an educational and a simplified models that shows the main known relations between the subregions [Cornu Ammonis (CA)1, CA2, CA3, and CA4], afferent and efferent nucleus (dentate gyrus and subiculum), the first also seeking to couple hippocampal neuroarchitecture, with posterior validation of both by application in an educational context.
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Affiliation(s)
- Lucas Longo
- School of Medical Sciences, Federal Fluminense University - UFF, Niterói, Rio de Janeiro, Brazil
| | - Thiago Lima
- School of Medical Sciences, Federal Fluminense University - UFF, Niterói, Rio de Janeiro, Brazil
| | - Maria Clara Bila
- School of Medical Sciences, Federal Fluminense University - UFF, Niterói, Rio de Janeiro, Brazil
| | - João Brogin
- Department of Mechanical Engineering, Universidade Estadual de São Paulo - UNESP, São Paulo, Brazil
| | - Jean Faber
- Department of Neurology and Neurosurgery, Escola Paulista de Medicina, Universidade Federal de São Paulo - UNIFESP, São Paulo, Brazil
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Speers LJ, Bilkey DK. Inflammation in Schizophrenia: The Role of Disordered Oscillatory Mechanisms. Cells 2025; 14:650. [PMID: 40358174 PMCID: PMC12071425 DOI: 10.3390/cells14090650] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/25/2025] [Revised: 04/16/2025] [Accepted: 04/24/2025] [Indexed: 05/15/2025] Open
Abstract
Schizophrenia is a chronic, debilitating disorder with diverse symptomatology, including disorganised cognition and behaviour. Despite considerable research effort, we have only a limited understanding of the underlying brain dysfunction. A significant proportion of individuals with schizophrenia exhibit high levels of inflammation, and inflammation associated with maternal immune system activation is a risk factor for the disorder. In this review, we outline the potential role of inflammation in the disorder, with a particular focus on how cytokine release might affect the development and function of GABAergic interneurons. One consequence of this change in inhibitory control is a disruption in oscillatory processes in the brain. These changes disrupt the spatial and temporal synchrony of neural activity in the brain, which, by disturbing representations of time and space, may underlie some of the disorganisation symptoms observed in the disorder.
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Affiliation(s)
| | - David K. Bilkey
- Psychology Department, University of Otago, Dunedin 9016, New Zealand
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Liu X, Zhang Z, Gan L, Yu P, Dai J. Medium Spiny Neurons Mediate Timing Perception in Coordination with Prefrontal Neurons in Primates. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2025; 12:e2412963. [PMID: 39932056 PMCID: PMC12021029 DOI: 10.1002/advs.202412963] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 10/15/2024] [Revised: 12/19/2024] [Indexed: 04/26/2025]
Abstract
Timing perception is a fundamental cognitive function that allows organisms to navigate their environment effectively, encompassing both prospective and retrospective timing. Despite significant advancements in understanding how the brain processes temporal information, the neural mechanisms underlying these two forms of timing remain largely unexplored. In this study, it aims to bridge this knowledge gap by elucidating the functional roles of various neuronal populations in the striatum and prefrontal cortex (PFC) in shaping subjective experiences of time. Utilizing a large-scale electrode array, it recorded responses from over 3000 neurons in the striatum and PFC of macaque monkeys during timing tasks. The analysis classified neurons into distinct groups and revealed that retrospective and prospective timings are governed by separate neural processes. Specifically, this study demonstrates that medium spiny neurons (MSNs) in the striatum play a crucial role in facilitating these timing processes. Through cell-type-specific manipulation, it identified D2-MSNs as the primary contributors to both forms of timing. Additionally, the findings indicate that effective processing of timing requires coordination between the PFC and the striatum. In summary, this study advances the understanding of the neural foundations of timing perception and highlights its behavioral implications.
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Affiliation(s)
- Xinhe Liu
- Shenzhen Technological Research Center for Primate Translational MedicineShenzhen‐Hong Kong Institutes of Brain ScienceShenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhen518055China
- CAS Key Laboratory of Brain Connectome and Manipulationthe Brain Cognition and Brain Disease InstitutesShenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhen518055China
- Guangdong Provincial Key Laboratory of Brain Connectome and BehaviorShenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhen518055China
| | - Zhiting Zhang
- Shenzhen Technological Research Center for Primate Translational MedicineShenzhen‐Hong Kong Institutes of Brain ScienceShenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhen518055China
- CAS Key Laboratory of Brain Connectome and Manipulationthe Brain Cognition and Brain Disease InstitutesShenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhen518055China
- Guangdong Provincial Key Laboratory of Brain Connectome and BehaviorShenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhen518055China
| | - Lu Gan
- Research Center for Medical Artificial IntelligenceShenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhen518055China
| | - Panke Yu
- Shenzhen Technological Research Center for Primate Translational MedicineShenzhen‐Hong Kong Institutes of Brain ScienceShenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhen518055China
- University of Chinese Academy of SciencesBeijing100049China
| | - Ji Dai
- Shenzhen Technological Research Center for Primate Translational MedicineShenzhen‐Hong Kong Institutes of Brain ScienceShenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhen518055China
- CAS Key Laboratory of Brain Connectome and Manipulationthe Brain Cognition and Brain Disease InstitutesShenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhen518055China
- Guangdong Provincial Key Laboratory of Brain Connectome and BehaviorShenzhen Institutes of Advanced TechnologyChinese Academy of SciencesShenzhen518055China
- University of Chinese Academy of SciencesBeijing100049China
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唐 令, 李 佳, 徐 海. [Synchronized neural rhythms in rat hippocampal CA1 region and orbitofrontal cortex are involved in learning and memory consolidation in spatial goal-directed tasks]. NAN FANG YI KE DA XUE XUE BAO = JOURNAL OF SOUTHERN MEDICAL UNIVERSITY 2025; 45:479-487. [PMID: 40159962 PMCID: PMC11955881 DOI: 10.12122/j.issn.1673-4254.2025.03.05] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Subscribe] [Scholar Register] [Received: 12/18/2024] [Indexed: 04/02/2025]
Abstract
OBJECTIVES To investigate the neural mechanisms of rhythmic activity in the hippocampal CA1 region and orbitofrontal cortex (OFC) during a spatial goal-directed task. METHODS Four long-Evans rats were trained to perform a spatial goal-directed task in a land-based water maze (Cheese-board maze). The task was divided into 5 periods: Pre-test, Pre-sleep, Learning, Post-sleep, and Post-test. During the Learning phase, the task was split into two goal navigation and two reward acquisition processes with a total of 8 learning stages. Local field potentials (LFP) from the CA1 and the OFC were recorded, and power spectral density analysis was performed on Theta (6-12 Hz), Beta (15-30 Hz), Low gamma (30-60 Hz), and High gamma (60-90 Hz) bands. Coherence, phase-locking value (PLV), and phase-amplitude cross coupling (PAC) were used to assess the interactions between the CA1 and the OFC during learning and memory. RESULTS During the task training, the rats showed consistent rhythms of OFC neural activity across the task states (P>0.05) while exhibiting significant changes in Beta and High gamma rhythms in the CA1 region (P<0.05). Coherence and PLV between the CA1 and the OFC were higher during goal navigation, especially in the stable learning phase (Stage 8 vs Stage 1, P<0.01). The rats showed stronger cross-frequency coupling between CA1-Theta and OFC-Low gamma in the Post-test phase than in the Pre-test phase (P<0.05). CONCLUSIONS Learning and memory consolidation in goal-directed tasks involve synchronized activity between the CA1 region and the OFC, and cross-frequency coupling plays a key role in maintaining short-term memory of reward locations in rats.
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Dorian CC, Taxidis J, Buonomano D, Golshani P. Hippocampal sequences represent working memory and implicit timing. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2025.03.17.643736. [PMID: 40166270 PMCID: PMC11956965 DOI: 10.1101/2025.03.17.643736] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/02/2025]
Abstract
Working memory (WM) and timing are considered distinct cognitive functions, yet the neural signatures underlying both can be similar. To address the hypothesis that WM and timing may be multiplexed we developed a novel rodent task where 1st odor identity predicts the delay duration. We found that WM performance decreased when delay expectations were violated. Performance was worse for unexpected long delays than for unexpected short delays, suggesting that WM may be tuned to expire in a delay-dependent manner. Calcium imaging of dorsal CA1 neurons revealed odor-specific sequential activity tiling the short and long delays. Neural sequence structure also reflected expectation of the timing of the 2nd odor-i.e., of the expected delay. Consistent with the hypothesis that WM and timing may be multiplexed, our findings suggest that neural sequences in dorsal CA1 may encode cues and cue-specific elapsed time during the delay period of a WM task.
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Affiliation(s)
- Conor C. Dorian
- Department of Neurology, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA
| | - Jiannis Taxidis
- Program in Neurosciences and Mental Health, The Hospital for Sick Children, Toronto, Ontario, Canada
- Department of Physiology, University of Toronto, Toronto, Ontario, Canada
| | - Dean Buonomano
- Department of Neurology, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA
- Department of Neurobiology, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA
- Department of Psychology, University of California Los Angeles, Los Angeles, CA, USA
| | - Peyman Golshani
- Department of Neurology, David Geffen School of Medicine, University of California Los Angeles, Los Angeles, CA, USA
- Greater Los Angeles Veteran Affairs Medical Center, Los Angeles, CA, USA
- Intellectual and Developmental Disabilities Research Center, University of California Los Angeles, Los Angeles, CA, USA
- Semel Institute for Neuroscience and Human Behavior, University of California, Los Angeles, CA, USA
- Integrative Center for Learning and Memory, University of California, Los Angeles, CA, USA
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Heldman R, Pang D, Zhao X, Mensh B, Wang Y. Time or distance encoding by hippocampal neurons with heterogenous ramping rates. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2025:2023.03.12.532295. [PMID: 36993346 PMCID: PMC10054991 DOI: 10.1101/2023.03.12.532295] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/19/2023]
Abstract
To navigate their environments effectively, animals frequently integrate distance or time information to seek food and avoid threats. This integration process is thought to engage hippocampal neurons that fire at specific distances or times. Using virtual-reality environments, we uncovered two previously unknown functional subpopulations of CA1 pyramidal neurons that encode distance or time through a novel two-phase coding mechanism. The first subpopulation exhibits a collective increase in activity that peaks at similar times, marking the onset of integration; subsequently, individual neurons gradually diverge in their firing rates due to heterogeneous decay rates, enabling time encoding. In contrast, the second subpopulation initially decreases its activity before gradually ramping up. Closed-loop optogenetic experiments revealed that inactivating somatostatin-positive (SST) interneurons disrupts the first subpopulation, behaviorally impairing integration accuracy, while inactivating parvalbumin-positive (PV) interneurons disrupts the second subpopulation, impairing behavior during integration initiation. These findings support the conclusion that SST interneurons establish an integration window, while PV interneurons generate a reset to reinitiate integration. This study elucidates parallel neural circuits that facilitate distinct aspects of distance or time integration, offering new insights into the computations underlying navigation and memory encoding.
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Li Y, Yin W, Wang X, Li J, Zhou S, Ma C, Yuan P, Li B. Stable sequential dynamics in prefrontal cortex represents subjective estimation of time. eLife 2024; 13:RP96603. [PMID: 39660591 PMCID: PMC11634065 DOI: 10.7554/elife.96603] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/12/2024] Open
Abstract
Time estimation is an essential prerequisite underlying various cognitive functions. Previous studies identified 'sequential firing' and 'activity ramps' as the primary neuron activity patterns in the medial frontal cortex (mPFC) that could convey information regarding time. However, the relationship between these patterns and the timing behavior has not been fully understood. In this study, we utilized in vivo calcium imaging of mPFC in rats performing a timing task. We observed cells that showed selective activation at trial start, end, or during the timing interval. By aligning long-term time-lapse datasets, we discovered that sequential patterns of time coding were stable over weeks, while cells coding for trial start or end showed constant dynamism. Furthermore, with a novel behavior design that allowed the animal to determine individual trial interval, we were able to demonstrate that real-time adjustment in the sequence procession speed closely tracked the trial-to-trial interval variations. And errors in the rats' timing behavior can be primarily attributed to the premature ending of the time sequence. Together, our data suggest that sequential activity maybe a stable neural substrate that represents time under physiological conditions. Furthermore, our results imply the existence of a unique cell type in the mPFC that participates in the time-related sequences. Future characterization of this cell type could provide important insights in the neural mechanism of timing and related cognitive functions.
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Affiliation(s)
- Yiting Li
- Institute of Biomedical Innovation, Jiangxi Medical College, Nanchang UniversityNanchangChina
- Department of Rehabilitation Medicine, Huashan Hospital, State Key Laboratory of Medical Neurobiology, Institute for Translational Brain Research, MOE Frontiers Center for Brain Science, MOE Innovative Center for New Drug Development of Immune Inflammatory Diseases, Fudan UniversityShanghaiChina
| | - Wenqu Yin
- Institute of Biomedical Innovation, Jiangxi Medical College, Nanchang UniversityNanchangChina
| | - Xin Wang
- Department of Rehabilitation Medicine, Huashan Hospital, State Key Laboratory of Medical Neurobiology, Institute for Translational Brain Research, MOE Frontiers Center for Brain Science, MOE Innovative Center for New Drug Development of Immune Inflammatory Diseases, Fudan UniversityShanghaiChina
| | - Jiawen Li
- Institute of Biomedical Innovation, Jiangxi Medical College, Nanchang UniversityNanchangChina
- The Second Clinical Medicine School of Nanchang UniversityNanchangChina
| | - Shanglin Zhou
- State Key Laboratory of Medical Neurobiology, Institute for Translational Brain Research, MOEFrontiers Center for Brain Science, Fudan UniversityShanghaiChina
| | - Chaolin Ma
- Institute of Biomedical Innovation, Jiangxi Medical College, Nanchang UniversityNanchangChina
| | - Peng Yuan
- Department of Rehabilitation Medicine, Huashan Hospital, State Key Laboratory of Medical Neurobiology, Institute for Translational Brain Research, MOE Frontiers Center for Brain Science, MOE Innovative Center for New Drug Development of Immune Inflammatory Diseases, Fudan UniversityShanghaiChina
| | - Baoming Li
- Institute of Biomedical Innovation, Jiangxi Medical College, Nanchang UniversityNanchangChina
- Institute of Brain Science and Department of Physiology, School of Basic Medical Science, Hangzhou Normal UniversityHangzhouChina
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Chen S, Cheng N, Chen X, Wang C. Integration and competition between space and time in the hippocampus. Neuron 2024; 112:3651-3664.e8. [PMID: 39241779 DOI: 10.1016/j.neuron.2024.08.007] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/12/2024] [Revised: 07/11/2024] [Accepted: 08/09/2024] [Indexed: 09/09/2024]
Abstract
Episodic memory is organized in both spatial and temporal contexts. The hippocampus is crucial for episodic memory and has been demonstrated to encode spatial and temporal information. However, how the representations of space and time interact in the hippocampal memory system is still unclear. Here, we recorded the activity of hippocampal CA1 neurons in mice in a variety of one-dimensional navigation tasks while systematically varying the speed of the animals. For all tasks, we found neurons simultaneously represented space and elapsed time. There was a negative correlation between the preferred space and lap duration, e.g., the preferred spatial position shifted more toward the origin when the lap duration became longer. A similar relationship between the preferred time and traveled distance was also observed. The results strongly suggest a competitive and integrated representation of space-time by single hippocampal neurons, which may provide the neural basis for spatiotemporal contexts.
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Affiliation(s)
- Shijie Chen
- Brain Research Centre, Department of Neuroscience, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, China
| | - Ning Cheng
- Shenzhen Key Laboratory of Precision Diagnosis and Treatment of Depression, Shenzhen-Hong Kong Institute of Brain Science, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China
| | - Xiaojing Chen
- Brain Research Centre, Department of Neuroscience, School of Life Sciences, Southern University of Science and Technology, Shenzhen 518055, China.
| | - Cheng Wang
- Shenzhen Key Laboratory of Precision Diagnosis and Treatment of Depression, Shenzhen-Hong Kong Institute of Brain Science, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China; CAS Key Laboratory of Brain Connectome and Manipulation, The Brain Cognition and Brain Disease Institute, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China; Guangdong Provincial Key Laboratory of Brain Connectome and Behavior, The Brain Cognition and Brain Disease Institute, Shenzhen Institute of Advanced Technology, Chinese Academy of Sciences, Shenzhen 518055, China; Key Laboratory of Brain Cognition and Brain-inspired Intelligence Technology, Chinese Academy of Sciences, Shanghai 200031, China.
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Basu A, Yang JH, Yu A, Glaeser-Khan S, Rondeau JA, Feng J, Krystal JH, Li Y, Kaye AP. Frontal Norepinephrine Represents a Threat Prediction Error Under Uncertainty. Biol Psychiatry 2024; 96:256-267. [PMID: 38316333 PMCID: PMC11269024 DOI: 10.1016/j.biopsych.2024.01.025] [Citation(s) in RCA: 6] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 06/06/2023] [Revised: 01/19/2024] [Accepted: 01/29/2024] [Indexed: 02/07/2024]
Abstract
BACKGROUND To adapt to threats in the environment, animals must predict them and engage in defensive behavior. While the representation of a prediction error signal for reward has been linked to dopamine, a neuromodulatory prediction error for aversive learning has not been identified. METHODS We measured and manipulated norepinephrine release during threat learning using optogenetics and a novel fluorescent norepinephrine sensor. RESULTS We found that norepinephrine response to conditioned stimuli reflects aversive memory strength. When delays between auditory stimuli and footshock are introduced, norepinephrine acts as a prediction error signal. However, temporal difference prediction errors do not fully explain norepinephrine dynamics. To explain noradrenergic signaling, we used an updated reinforcement learning model with uncertainty about time and found that it explained norepinephrine dynamics across learning and variations in temporal and auditory task structure. CONCLUSIONS Norepinephrine thus combines cognitive and affective information into a predictive signal and links time with the anticipation of danger.
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Affiliation(s)
- Aakash Basu
- Department of Psychiatry, Yale School of Medicine, New Haven, Connecticut; Interdepartmental Neuroscience Program, Yale School of Medicine, New Haven, Connecticut
| | - Jen-Hau Yang
- Department of Psychiatry, Yale School of Medicine, New Haven, Connecticut
| | - Abigail Yu
- Department of Psychiatry, Yale School of Medicine, New Haven, Connecticut
| | | | - Jocelyne A Rondeau
- Department of Psychiatry, Yale School of Medicine, New Haven, Connecticut
| | - Jiesi Feng
- State Key Laboratory of Membrane Biology, Peking University School of Life Sciences, Beijing, China
| | - John H Krystal
- Department of Psychiatry, Yale School of Medicine, New Haven, Connecticut; Clinical Neuroscience Division, Veterans Administration National Center for PTSD, West Haven, Connecticut
| | - Yulong Li
- State Key Laboratory of Membrane Biology, Peking University School of Life Sciences, Beijing, China; Peking University-IDG/McGovern Institute for Brain Research, Beijing, China; Peking-Tsinghua Center for Life Sciences, Academy for Advanced Interdisciplinary Studies, Peking University, Beijing, China; Chinese Institute for Brain Research, Beijing, China
| | - Alfred P Kaye
- Department of Psychiatry, Yale School of Medicine, New Haven, Connecticut; Clinical Neuroscience Division, Veterans Administration National Center for PTSD, West Haven, Connecticut; Wu Tsai Institute, Yale University, New Haven, Connecticut.
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Young RA, Shin JD, Guo Z, Jadhav SP. Hippocampal-prefrontal communication subspaces align with behavioral and network patterns in a spatial memory task. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.07.08.601617. [PMID: 39026752 PMCID: PMC11257456 DOI: 10.1101/2024.07.08.601617] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 07/20/2024]
Abstract
Rhythmic network states have been theorized to facilitate communication between brain regions, but how these oscillations influence communication subspaces, i.e, the low-dimensional neural activity patterns that mediate inter-regional communication, and in turn how subspaces impact behavior remains unclear. Using a spatial memory task in rats, we simultaneously recorded ensembles from hippocampal CA1 and the prefrontal cortex (PFC) to address this question. We found that task behaviors best aligned with low-dimensional, shared subspaces between these regions, rather than local activity in either region. Critically, both network oscillations and speed modulated the structure and performance of this communication subspace. Contrary to expectations, theta coherence did not better predict CA1-PFC shared activity, while theta power played a more significant role. To understand the communication space, we visualized shared CA1-PFC communication geometry using manifold techniques and found ring-like structures. We hypothesize that these shared activity manifolds are utilized to mediate the task behavior. These findings suggest that memory-guided behaviors are driven by shared CA1-PFC interactions that are dynamically modulated by oscillatory states, offering a novel perspective on the interplay between rhythms and behaviorally relevant neural communication.
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Pan M, Zhang Y, Wright WC, Liu X, Passaia B, Currier D, Low J, Chapple RH, Steele JA, Connelly JP, Lu M, Lee HM, Loughran AJ, Yang L, Abraham BJ, Pruett-Miller SM, Freeman B, Campbell GE, Dyer MA, Chen T, Stewart E, Koo S, Sheppard H, Easton J, Geeleher P. Bone morphogenetic protein (BMP) signaling determines neuroblastoma cell fate and sensitivity to retinoic acid. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.05.09.593394. [PMID: 38798584 PMCID: PMC11118433 DOI: 10.1101/2024.05.09.593394] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/29/2024]
Abstract
Retinoic acid (RA) is a standard-of-care neuroblastoma drug thought to be effective by inducing differentiation. Curiously, RA has little effect on primary human tumors during upfront treatment but can eliminate neuroblastoma cells from the bone marrow during post-chemo consolidation therapy-a discrepancy that has never been explained. To investigate this, we treated a large cohort of neuroblastoma cell lines with RA and observed that the most RA-sensitive cells predominantly undergo apoptosis or senescence, rather than differentiation. We conducted genome-wide CRISPR knockout screens under RA treatment, which identified BMP signaling as controlling the apoptosis/senescence vs differentiation cell fate decision and determining RA's overall potency. We then discovered that BMP signaling activity is markedly higher in neuroblastoma patient samples at bone marrow metastatic sites, providing a plausible explanation for RA's ability to clear neuroblastoma cells specifically from the bone marrow, seemingly mimicking interactions between BMP and RA during normal development.
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12
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Zhou S, Buonomano DV. Unified control of temporal and spatial scales of sensorimotor behavior through neuromodulation of short-term synaptic plasticity. SCIENCE ADVANCES 2024; 10:eadk7257. [PMID: 38701208 DOI: 10.1126/sciadv.adk7257] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/11/2023] [Accepted: 04/03/2024] [Indexed: 05/05/2024]
Abstract
Neuromodulators have been shown to alter the temporal profile of short-term synaptic plasticity (STP); however, the computational function of this neuromodulation remains unexplored. Here, we propose that the neuromodulation of STP provides a general mechanism to scale neural dynamics and motor outputs in time and space. We trained recurrent neural networks that incorporated STP to produce complex motor trajectories-handwritten digits-with different temporal (speed) and spatial (size) scales. Neuromodulation of STP produced temporal and spatial scaling of the learned dynamics and enhanced temporal or spatial generalization compared to standard training of the synaptic weights in the absence of STP. The model also accounted for the results of two experimental studies involving flexible sensorimotor timing. Neuromodulation of STP provides a unified and biologically plausible mechanism to control the temporal and spatial scales of neural dynamics and sensorimotor behaviors.
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Affiliation(s)
- Shanglin Zhou
- Institute for Translational Brain Research, Fudan University, Shanghai, China
- State Key Laboratory of Medical Neurobiology, Fudan University, Shanghai, China
- MOE Frontiers Center for Brain Science, Fudan University, Shanghai, China
- Zhongshan Hospital, Fudan University, Shanghai, China
| | - Dean V Buonomano
- Department of Neurobiology, University of California, Los Angeles, Los Angeles, CA, USA
- Department of Psychology, University of California, Los Angeles, Los Angeles, CA, USA
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13
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Secer G, Knierim JJ, Cowan NJ. Continuous Bump Attractor Networks Require Explicit Error Coding for Gain Recalibration. RESEARCH SQUARE 2024:rs.3.rs-4209280. [PMID: 38699376 PMCID: PMC11065082 DOI: 10.21203/rs.3.rs-4209280/v1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 05/05/2024]
Abstract
Representations of continuous variables are crucial to create internal models of the external world. A prevailing model of how the brain maintains these representations is given by continuous bump attractor networks (CBANs) in a broad range of brain functions across different areas, such as spatial navigation in hippocampal/entorhinal circuits and working memory in prefrontal cortex. Through recurrent connections, a CBAN maintains a persistent activity bump, whose peak location can vary along a neural space, corresponding to different values of a continuous variable. To track the value of a continuous variable changing over time, a CBAN updates the location of its activity bump based on inputs that encode the changes in the continuous variable (e.g., movement velocity in the case of spatial navigation)-a process akin to mathematical integration. This integration process is not perfect and accumulates error over time. For error correction, CBANs can use additional inputs providing ground-truth information about the continuous variable's correct value (e.g., visual landmarks for spatial navigation). These inputs enable the network dynamics to automatically correct any representation error. Recent experimental work on hippocampal place cells has shown that, beyond correcting errors, ground-truth inputs also fine-tune the gain of the integration process, a crucial factor that links the change in the continuous variable to the updating of the activity bump's location. However, existing CBAN models lack this plasticity, offering no insights into the neural mechanisms and representations involved in the recalibration of the integration gain. In this paper, we explore this gap by using a ring attractor network, a specific type of CBAN, to model the experimental conditions that demonstrated gain recalibration in hippocampal place cells. Our analysis reveals the necessary conditions for neural mechanisms behind gain recalibration within a CBAN. Unlike error correction, which occurs through network dynamics based on ground-truth inputs, gain recalibration requires an additional neural signal that explicitly encodes the error in the network's representation via a rate code. Finally, we propose a modified ring attractor network as an example CBAN model that verifies our theoretical findings. Combining an error-rate code with Hebbian synaptic plasticity, this model achieves recalibration of integration gain in a CBAN, ensuring accurate representation for continuous variables.
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Affiliation(s)
- Gorkem Secer
- Laboratory for Computational Sensing and Robotics, Johns Hopkins University, Baltimore, MD 21218, USA
- Zanvyl Krieger Mind/Brain Institute, Johns Hopkins University, Baltimore, MD 21218, USA
| | - James J Knierim
- Zanvyl Krieger Mind/Brain Institute, Johns Hopkins University, Baltimore, MD 21218, USA
- Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
- Kavli Neuroscience Discovery Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
| | - Noah J Cowan
- Laboratory for Computational Sensing and Robotics, Johns Hopkins University, Baltimore, MD 21218, USA
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA
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14
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Secer G, Knierim JJ, Cowan NJ. Continuous Bump Attractor Networks Require Explicit Error Coding for Gain Recalibration. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.02.12.579874. [PMID: 38562699 PMCID: PMC10983875 DOI: 10.1101/2024.02.12.579874] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 04/04/2024]
Abstract
Representations of continuous variables are crucial to create internal models of the external world. A prevailing model of how the brain maintains these representations is given by continuous bump attractor networks (CBANs) in a broad range of brain functions across different areas, such as spatial navigation in hippocampal/entorhinal circuits and working memory in prefrontal cortex. Through recurrent connections, a CBAN maintains a persistent activity bump, whose peak location can vary along a neural space, corresponding to different values of a continuous variable. To track the value of a continuous variable changing over time, a CBAN updates the location of its activity bump based on inputs that encode the changes in the continuous variable (e.g., movement velocity in the case of spatial navigation)-a process akin to mathematical integration. This integration process is not perfect and accumulates error over time. For error correction, CBANs can use additional inputs providing ground-truth information about the continuous variable's correct value (e.g., visual landmarks for spatial navigation). These inputs enable the network dynamics to automatically correct any representation error. Recent experimental work on hippocampal place cells has shown that, beyond correcting errors, ground-truth inputs also fine-tune the gain of the integration process, a crucial factor that links the change in the continuous variable to the updating of the activity bump's location. However, existing CBAN models lack this plasticity, offering no insights into the neural mechanisms and representations involved in the recalibration of the integration gain. In this paper, we explore this gap by using a ring attractor network, a specific type of CBAN, to model the experimental conditions that demonstrated gain recalibration in hippocampal place cells. Our analysis reveals the necessary conditions for neural mechanisms behind gain recalibration within a CBAN. Unlike error correction, which occurs through network dynamics based on ground-truth inputs, gain recalibration requires an additional neural signal that explicitly encodes the error in the network's representation via a rate code. Finally, we propose a modified ring attractor network as an example CBAN model that verifies our theoretical findings. Combining an error-rate code with Hebbian synaptic plasticity, this model achieves recalibration of integration gain in a CBAN, ensuring accurate representation for continuous variables.
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Affiliation(s)
- Gorkem Secer
- Laboratory for Computational Sensing and Robotics, Johns Hopkins University, Baltimore, MD 21218, USA
- Zanvyl Krieger Mind/Brain Institute, Johns Hopkins University, Baltimore, MD 21218, USA
| | - James J Knierim
- Zanvyl Krieger Mind/Brain Institute, Johns Hopkins University, Baltimore, MD 21218, USA
- Solomon H. Snyder Department of Neuroscience, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
- Kavli Neuroscience Discovery Institute, Johns Hopkins University School of Medicine, Baltimore, MD 21205, USA
| | - Noah J Cowan
- Laboratory for Computational Sensing and Robotics, Johns Hopkins University, Baltimore, MD 21218, USA
- Department of Mechanical Engineering, Johns Hopkins University, Baltimore, MD 21218, USA
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15
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Strickland JA, Austen JM, Sprengel R, Sanderson DJ. Knockout of NMDARs in CA1 and dentate gyrus fails to impair temporal control of conditioned behavior in mice. Hippocampus 2024; 34:126-140. [PMID: 38140716 DOI: 10.1002/hipo.23593] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/15/2023] [Revised: 11/10/2023] [Accepted: 11/25/2023] [Indexed: 12/24/2023]
Abstract
The hippocampus has been implicated in temporal learning. Plasticity within the hippocampus requires NMDA receptor-dependent glutamatergic neurotransmission. We tested the prediction that hippocampal NMDA receptors are required for learning about time by testing mice that lack postembryonal NMDARs in the CA1 and dentate gyrus (DG) hippocampal subfields on three different appetitive temporal learning procedures. The conditional knockout mice (Grin1ΔDCA1 ) showed normal sensitivity to cue duration, responding at a higher level to a short duration cue than compared to a long duration cue. Knockout mice also showed normal precision and accuracy of response timing in the peak procedure in which reinforcement occurred after 10 s delay within a 30 s cue presentation. Mice were tested on the matching of response rates to reinforcement rates on instrumental conditioning with two levers reinforced on a concurrent variable interval schedule. Pressing on one lever was reinforced at a higher rate than the other lever. Grin1ΔDGCA1 mice showed normal sensitivity to the relative reinforcement rates of the levers. In contrast to the lack of effect of hippocampal NMDAR deletion on measures of temporal sensitivity, Grin1ΔDGCA1 mice showed increased baseline measures of magazine activity and lever pressing. Furthermore, reversal learning was enhanced when the reward contingencies were switched in the lever pressing task, but this was true only for mice trained with a large difference between relative reinforcement rates between the levers. The results failed to demonstrate a role for NMDARs in excitatory CA1 and DG neurons in learning about temporal information.
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Affiliation(s)
| | | | - Rolf Sprengel
- Departments of Molecular Neurobiology and Physiology, Max Planck Institute for Medical Research, Heidelberg, Germany
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16
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Ma M, Simoes de Souza F, Futia GL, Anderson SR, Riguero J, Tollin D, Gentile-Polese A, Platt JP, Steinke K, Hiratani N, Gibson EA, Restrepo D. Sequential activity of CA1 hippocampal cells constitutes a temporal memory map for associative learning in mice. Curr Biol 2024; 34:841-854.e4. [PMID: 38325376 PMCID: PMC11645751 DOI: 10.1016/j.cub.2024.01.021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/21/2023] [Revised: 01/02/2024] [Accepted: 01/08/2024] [Indexed: 02/09/2024]
Abstract
Sequential neural dynamics encoded by time cells play a crucial role in hippocampal function. However, the role of hippocampal sequential neural dynamics in associative learning is an open question. We used two-photon Ca2+ imaging of dorsal CA1 (dCA1) neurons in the stratum pyramidale (SP) in head-fixed mice performing a go-no go associative learning task to investigate how odor valence is temporally encoded in this area of the brain. We found that SP cells responded differentially to the rewarded or unrewarded odor. The stimuli were decoded accurately from the activity of the neuronal ensemble, and accuracy increased substantially as the animal learned to differentiate the stimuli. Decoding the stimulus from individual SP cells responding differentially revealed that decision-making took place at discrete times after stimulus presentation. Lick prediction decoded from the ensemble activity of cells in dCA1 correlated linearly with lick behavior. Our findings indicate that sequential activity of SP cells in dCA1 constitutes a temporal memory map used for decision-making in associative learning. VIDEO ABSTRACT.
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Affiliation(s)
- Ming Ma
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Fabio Simoes de Souza
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA; Center for Mathematics, Computation and Cognition, Federal University of ABC, Sao Bernardo do Campo 09606-045, SP, Brazil
| | - Gregory L Futia
- Department of Bioengineering, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Sean R Anderson
- Department of Physiology and Biophysics, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Jose Riguero
- Department of Physiology and Biophysics, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA; Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Daniel Tollin
- Department of Physiology and Biophysics, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA; Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Arianna Gentile-Polese
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Jonathan P Platt
- Department of Neurosurgery, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Kira Steinke
- Integrated Physiology Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Naoki Hiratani
- Department of Neuroscience, Washington University, St. Louis, MO 63110, USA
| | - Emily A Gibson
- Department of Bioengineering, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA; Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - Diego Restrepo
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA; Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA.
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17
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Sosa M, Plitt MH, Giocomo LM. Hippocampal sequences span experience relative to rewards. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2023.12.27.573490. [PMID: 38234842 PMCID: PMC10793396 DOI: 10.1101/2023.12.27.573490] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 01/19/2024]
Abstract
Hippocampal place cells fire in sequences that span spatial environments and non-spatial modalities, suggesting that hippocampal activity can anchor to the most behaviorally salient aspects of experience. As reward is a highly salient event, we hypothesized that sequences of hippocampal activity can anchor to rewards. To test this, we performed two-photon imaging of hippocampal CA1 neurons as mice navigated virtual environments with changing hidden reward locations. When the reward moved, the firing fields of a subpopulation of cells moved to the same relative position with respect to reward, constructing a sequence of reward-relative cells that spanned the entire task structure. The density of these reward-relative sequences increased with task experience as additional neurons were recruited to the reward-relative population. Conversely, a largely separate subpopulation maintained a spatially-based place code. These findings thus reveal separate hippocampal ensembles can flexibly encode multiple behaviorally salient reference frames, reflecting the structure of the experience.
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Affiliation(s)
- Marielena Sosa
- Department of Neurobiology, Stanford University School of Medicine; Stanford, CA, USA
| | - Mark H. Plitt
- Department of Neurobiology, Stanford University School of Medicine; Stanford, CA, USA
- Present address: Department of Molecular and Cell Biology, University of California Berkeley; Berkeley, CA, USA
| | - Lisa M. Giocomo
- Department of Neurobiology, Stanford University School of Medicine; Stanford, CA, USA
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18
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Sloin HE, Spivak L, Levi A, Gattegno R, Someck S, Stark E. Local activation of CA1 pyramidal cells induces theta-phase precession. Science 2024; 383:551-558. [PMID: 38301006 DOI: 10.1126/science.adk2456] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/10/2023] [Accepted: 12/21/2023] [Indexed: 02/03/2024]
Abstract
Hippocampal theta-phase precession is involved in spatiotemporal coding and in generating multineural spike sequences, but how precession originates remains unresolved. To determine whether precession can be generated directly in hippocampal area CA1 and disambiguate multiple competing mechanisms, we used closed-loop optogenetics to impose artificial place fields in pyramidal cells of mice running on a linear track. More than one-third of the CA1 artificial fields exhibited synthetic precession that persisted for a full theta cycle. By contrast, artificial fields in the parietal cortex did not exhibit synthetic precession. These findings are incompatible with precession models based on inheritance, dual-input, spreading activation, inhibition-excitation summation, or somato-dendritic competition. Thus, a precession generator resides locally within CA1.
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Affiliation(s)
- Hadas E Sloin
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv 6997801, Israel
- Department of Physiology and Pharmacology, Faculty of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Lidor Spivak
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv 6997801, Israel
- Department of Physiology and Pharmacology, Faculty of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Amir Levi
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv 6997801, Israel
- Department of Physiology and Pharmacology, Faculty of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Roni Gattegno
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Shirly Someck
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv 6997801, Israel
- Department of Physiology and Pharmacology, Faculty of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel
| | - Eran Stark
- Sagol School of Neuroscience, Tel Aviv University, Tel Aviv 6997801, Israel
- Department of Physiology and Pharmacology, Faculty of Medicine, Tel Aviv University, Tel Aviv 6997801, Israel
- Sagol Department of Neurobiology, Haifa University, Haifa 3103301, Israel
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19
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Rolando F, Kononowicz TW, Duhamel JR, Doyère V, Wirth S. Distinct neural adaptations to time demand in the striatum and the hippocampus. Curr Biol 2024; 34:156-170.e7. [PMID: 38141617 DOI: 10.1016/j.cub.2023.11.066] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2023] [Revised: 10/18/2023] [Accepted: 11/30/2023] [Indexed: 12/25/2023]
Abstract
How do neural codes adjust to track time across a range of resolutions, from milliseconds to multi-seconds, as a function of the temporal frequency at which events occur? To address this question, we studied time-modulated cells in the striatum and the hippocampus, while macaques categorized three nested intervals within the sub-second or the supra-second range (up to 1, 2, 4, or 8 s), thereby modifying the temporal resolution needed to solve the task. Time-modulated cells carried more information for intervals with explicit timing demand, than for any other interval. The striatum, particularly the caudate, supported the most accurate temporal prediction throughout all time ranges. Strikingly, its temporal readout adjusted non-linearly to the time range, suggesting that the striatal resolution shifted from a precise millisecond to a coarse multi-second range as a function of demand. This is in line with monkey's behavioral latencies, which indicated that they tracked time until 2 s but employed a coarse categorization strategy for durations beyond. By contrast, the hippocampus discriminated only the beginning from the end of intervals, regardless of the range. We propose that the hippocampus may provide an overall poor signal marking an event's beginning, whereas the striatum optimizes neural resources to process time throughout an interval adapting to the ongoing timing necessity.
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Affiliation(s)
- Felipe Rolando
- Institut des Sciences Cognitives Marc Jeannerod, CNRS, Université Lyon 1, 67 boulevard Pinel, 69500 Bron, France
| | - Tadeusz W Kononowicz
- Institut des Sciences Cognitives Marc Jeannerod, CNRS, Université Lyon 1, 67 boulevard Pinel, 69500 Bron, France; Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay (NeuroPSI), 91400 Saclay, France; Institute of Psychology, The Polish Academy of Sciences, ul. Jaracza 1, 00-378 Warsaw, Poland
| | - Jean-René Duhamel
- Institut des Sciences Cognitives Marc Jeannerod, CNRS, Université Lyon 1, 67 boulevard Pinel, 69500 Bron, France
| | - Valérie Doyère
- Université Paris-Saclay, CNRS, Institut des Neurosciences Paris-Saclay (NeuroPSI), 91400 Saclay, France
| | - Sylvia Wirth
- Institut des Sciences Cognitives Marc Jeannerod, CNRS, Université Lyon 1, 67 boulevard Pinel, 69500 Bron, France.
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20
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White E, Dalley JW. Brain mechanisms of temporal processing in impulsivity: Relevance to attention-deficit hyperactivity disorder. Brain Neurosci Adv 2024; 8:23982128241272234. [PMID: 39148691 PMCID: PMC11325328 DOI: 10.1177/23982128241272234] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/20/2024] [Accepted: 06/25/2024] [Indexed: 08/17/2024] Open
Abstract
In this article, we critique the hypothesis that different varieties of impulsivity, including impulsiveness present in attention-deficit hyperactivity disorder, encompass an accelerated perception of time. This conceptualisation provides insights into how individuals with attention-deficit hyperactivity disorder have the capacity to maximise cognitive capabilities by more closely aligning themselves with appropriate environmental contexts (e.g. fast paced tasks that prevent boredom). We discuss the evidence for altered time perception in attention-deficit hyperactivity disorder alongside putative underlying neurobiological substrates, including a distributed brain network mediating time perception over multiple timescales. In particular, we explore the importance of temporal representations across the brain for time perception and symptom manifestation in attention-deficit hyperactivity disorder, including a prominent role of the hippocampus and other temporal lobe regions. We also reflect on how abnormalities in the perception of time may be relevant for understanding the aetiology of attention-deficit hyperactivity disorder and mechanism of action of existing medications.
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Affiliation(s)
- Eleanor White
- Department of Psychology, University of Cambridge, Cambridge, UK
| | - Jeffrey W Dalley
- Department of Psychology, University of Cambridge, Cambridge, UK
- Department of Psychiatry, Herschel Smith Building for Brain and Mind Sciences, Cambridge, UK
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21
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Soldado-Magraner S, Buonomano DV. Neural Sequences and the Encoding of Time. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2024; 1455:81-93. [PMID: 38918347 DOI: 10.1007/978-3-031-60183-5_5] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/27/2024]
Abstract
Converging experimental and computational evidence indicate that on the scale of seconds the brain encodes time through changing patterns of neural activity. Experimentally, two general forms of neural dynamic regimes that can encode time have been observed: neural population clocks and ramping activity. Neural population clocks provide a high-dimensional code to generate complex spatiotemporal output patterns, in which each neuron exhibits a nonlinear temporal profile. A prototypical example of neural population clocks are neural sequences, which have been observed across species, brain areas, and behavioral paradigms. Additionally, neural sequences emerge in artificial neural networks trained to solve time-dependent tasks. Here, we examine the role of neural sequences in the encoding of time, and how they may emerge in a biologically plausible manner. We conclude that neural sequences may represent a canonical computational regime to perform temporal computations.
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Affiliation(s)
| | - Dean V Buonomano
- Department of Neurobiology, University of California, Los Angeles, Los Angeles, CA, USA.
- Department of Psychology, University of California, Los Angeles, Los Angeles, CA, USA.
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22
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Tanaka M, Kameda M, Okada KI. Temporal Information Processing in the Cerebellum and Basal Ganglia. ADVANCES IN EXPERIMENTAL MEDICINE AND BIOLOGY 2024; 1455:95-116. [PMID: 38918348 DOI: 10.1007/978-3-031-60183-5_6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 06/27/2024]
Abstract
Temporal information processing in the range of a few hundred milliseconds to seconds involves the cerebellum and basal ganglia. In this chapter, we present recent studies on nonhuman primates. In the studies presented in the first half of the chapter, monkeys were trained to make eye movements when a certain amount of time had elapsed since the onset of the visual cue (time production task). The animals had to report time lapses ranging from several hundred milliseconds to a few seconds based on the color of the fixation point. In this task, the saccade latency varied with the time length to be measured and showed stochastic variability from one trial to the other. Trial-to-trial variability under the same conditions correlated well with pupil diameter and the preparatory activity in the deep cerebellar nuclei and the motor thalamus. Inactivation of these brain regions delayed saccades when asked to report subsecond intervals. These results suggest that the internal state, which changes with each trial, may cause fluctuations in cerebellar neuronal activity, thereby producing variations in self-timing. When measuring different time intervals, the preparatory activity in the cerebellum always begins approximately 500 ms before movements, regardless of the length of the time interval being measured. However, the preparatory activity in the striatum persists throughout the mandatory delay period, which can be up to 2 s, with different rate of increasing activity. Furthermore, in the striatum, the visual response and low-frequency oscillatory activity immediately before time measurement were altered by the length of the intended time interval. These results indicate that the state of the network, including the striatum, changes with the intended timing, which lead to different time courses of preparatory activity. Thus, the basal ganglia appear to be responsible for measuring time in the range of several hundred milliseconds to seconds, whereas the cerebellum is responsible for regulating self-timing variability in the subsecond range. The second half of this chapter presents studies related to periodic timing. During eye movements synchronized with alternating targets at regular intervals, different neurons in the cerebellar nuclei exhibit activity related to movement timing, predicted stimulus timing, and the temporal error of synchronization. Among these, the activity associated with target appearance is particularly enhanced during synchronized movements and may represent an internal model of the temporal structure of stimulus sequence. We also considered neural mechanism underlying the perception of periodic timing in the absence of movement. During perception of rhythm, we predict the timing of the next stimulus and focus our attention on that moment. In the missing oddball paradigm, the subjects had to detect the omission of a regularly repeated stimulus. When employed in humans, the results show that the fastest temporal limit for predicting each stimulus timing is about 0.25 s (4 Hz). In monkeys performing this task, neurons in the cerebellar nuclei, striatum, and motor thalamus exhibit periodic activity, with different time courses depending on the brain region. Since electrical stimulation or inactivation of recording sites changes the reaction time to stimulus omission, these neuronal activities must be involved in periodic temporal processing. Future research is needed to elucidate the mechanism of rhythm perception, which appears to be processed by both cortico-cerebellar and cortico-basal ganglia pathways.
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Affiliation(s)
- Masaki Tanaka
- Department of Physiology, Hokkaido University School of Medicine, Sapporo, Japan.
| | - Masashi Kameda
- Department of Physiology, Hokkaido University School of Medicine, Sapporo, Japan
| | - Ken-Ichi Okada
- Department of Physiology, Hokkaido University School of Medicine, Sapporo, Japan
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23
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Lin D, Huang AZ, Richards BA. Temporal encoding in deep reinforcement learning agents. Sci Rep 2023; 13:22335. [PMID: 38102369 PMCID: PMC10724179 DOI: 10.1038/s41598-023-49847-y] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/14/2023] [Accepted: 12/12/2023] [Indexed: 12/17/2023] Open
Abstract
Neuroscientists have observed both cells in the brain that fire at specific points in time, known as "time cells", and cells whose activity steadily increases or decreases over time, known as "ramping cells". It is speculated that time and ramping cells support temporal computations in the brain and carry mnemonic information. However, due to the limitations in animal experiments, it is difficult to determine how these cells really contribute to behavior. Here, we show that time cells and ramping cells naturally emerge in the recurrent neural networks of deep reinforcement learning models performing simulated interval timing and working memory tasks, which have learned to estimate expected rewards in the future. We show that these cells do indeed carry information about time and items stored in working memory, but they contribute to behavior in large part by providing a dynamic representation on which policy can be computed. Moreover, the information that they do carry depends on both the task demands and the variables provided to the models. Our results suggest that time cells and ramping cells could contribute to temporal and mnemonic calculations, but the way in which they do so may be complex and unintuitive to human observers.
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Affiliation(s)
- Dongyan Lin
- Integrated Program in Neuroscience, McGill University, Montreal, QC, H3A 0G4, Canada.
- Mila, Montreal, QC, H2S 3H1, Canada.
| | - Ann Zixiang Huang
- Mila, Montreal, QC, H2S 3H1, Canada
- School of Computer Science, McGill University, Montreal, QC, H3A 0G4, Canada
| | - Blake Aaron Richards
- Integrated Program in Neuroscience, McGill University, Montreal, QC, H3A 0G4, Canada
- Mila, Montreal, QC, H2S 3H1, Canada
- School of Computer Science, McGill University, Montreal, QC, H3A 0G4, Canada
- Department of Neurology and Neurosurgery, Montreal Neurological Institute, McGill University, Montreal, QC, H3A 0G4, Canada
- Learning in Machines and Brains Program, Canadian Institute for Advanced Research, Toronto, ON, M5G 1M1, Canada
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24
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Ma M, Simoes de Souza F, Futia G, Anderson S, Riguero J, Tollin D, Gentile-Polese A, Platt J, Hiratani N, Gibson EA, Restrepo D. Decision-Making Time Cells in Hippocampal Dorsal CA1. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2023:2023.10.01.560382. [PMID: 37873178 PMCID: PMC10592611 DOI: 10.1101/2023.10.01.560382] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Indexed: 10/25/2023]
Abstract
Sequential neural dynamics encoded by "time cells" play a crucial role in hippocampal function. However, the role of hippocampal sequential neural dynamics in associative learning is an open question. In this manuscript, we used two-photon Ca2+ imaging of dorsal CA1 pyramidal neurons in head-fixed mice performing a go-no-go associative learning task. We found that pyramidal cells responded differentially to the rewarded or unrewarded stimuli. The stimuli were decoded accurately from the activity of the neuronal ensemble, and accuracy increased substantially as the animal learned to differentiate the stimuli. Decoding the stimulus from individual pyramidal cells that responded differentially revealed that decision-making took place at discrete times after stimulus presentation. Lick prediction decoded from the ensemble activity of cells in dCA1 correlated linearly with lick behavior indicating that sequential activity of pyramidal cells in dCA1 constitutes a temporal memory map used for decision-making in associative learning.
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Affiliation(s)
- M. Ma
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
- These authors contributed equally to this work
| | - F. Simoes de Souza
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
- Center for Mathematics, Computation and Cognition, Federal University of ABC, Sao Bernardo do Campo, SP, Brazil
- These authors contributed equally to this work
| | - G.L. Futia
- Department of Bioengineering, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
| | - S.R. Anderson
- Department of Physiology and Biophysics, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
| | - J. Riguero
- Department of Physiology and Biophysics, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
- Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - D. Tollin
- Department of Physiology and Biophysics, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
- Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - A. Gentile-Polese
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
| | - J.P. Platt
- Department of Neurosurgery, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
| | - N. Hiratani
- Department of Neuroscience, Washington University, St. Louis, MO 63110, USA
| | - E. A. Gibson
- Department of Bioengineering, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
- Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
| | - D. Restrepo
- Department of Cell and Developmental Biology, University of Colorado Anschutz Medical Campus, Aurora, CO, 80045, USA
- Neuroscience Graduate Program, University of Colorado Anschutz Medical Campus, Aurora, CO 80045, USA
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25
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Robbe D. Lost in time: Relocating the perception of duration outside the brain. Neurosci Biobehav Rev 2023; 153:105312. [PMID: 37467906 DOI: 10.1016/j.neubiorev.2023.105312] [Citation(s) in RCA: 8] [Impact Index Per Article: 4.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/03/2023] [Accepted: 07/08/2023] [Indexed: 07/21/2023]
Abstract
It is well-accepted in neuroscience that animals process time internally to estimate the duration of intervals lasting between one and several seconds. More than 100 years ago, Henri Bergson nevertheless remarked that, because animals have memory, their inner experience of time is ever-changing, making duration impossible to measure internally and time a source of change. Bergson proposed that quantifying the inner experience of time requires its externalization in movements (observed or self-generated), as their unfolding leaves measurable traces in space. Here, studies across species are reviewed and collectively suggest that, in line with Bergson's ideas, animals spontaneously solve time estimation tasks through a movement-based spatialization of time. Moreover, the well-known scalable anticipatory responses of animals to regularly spaced rewards can be explained by the variable pressure of time on reward-oriented actions. Finally, the brain regions linked with time perception overlap with those implicated in motor control, spatial navigation and motivation. Thus, instead of considering time as static information processed by the brain, it might be fruitful to conceptualize it as a kind of force to which animals are more or less sensitive depending on their internal state and environment.
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Affiliation(s)
- David Robbe
- Institut de Neurobiologie de la Méditerranée (INMED), INSERM, Marseille, France; Aix-Marseille Université, Marseille, France.
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26
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Skye J, Bruss J, Herbet G, Tranel D, Boes AD. Localization of a Medial Temporal Lobe-Precuneus Network for Time Orientation. Ann Neurol 2023; 94:421-433. [PMID: 37183996 PMCID: PMC10524450 DOI: 10.1002/ana.26681] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/12/2022] [Revised: 04/26/2023] [Accepted: 05/02/2023] [Indexed: 05/16/2023]
Abstract
OBJECTIVE Time orientation is a fundamental cognitive process in which one's personal sense of time is matched with a universal reference. Time orientation is commonly assessed through mental status examination, yet its neural correlates remain unclear. Large lesions have been associated with deficits in time orientation, but the regional anatomy implicated in time disorientation is not well established. The current study investigates the anatomy of time disorientation and its network correlates in patients with focal brain lesions. METHODS Time orientation was assessed 3 months or more after lesion onset using the Benton Temporal Orientation Test (BTOT) in 550 patients with acquired, focal brain lesions, 39 of whom were impaired. Multivariate lesion-symptom mapping and lesion network mapping were used to evaluate the anatomy and networks associated with time disorientation. Performance on a variety of neuropsychological tests was compared between the time oriented and time disoriented group. RESULTS Lesion-symptom mapping showed that lesions of the precuneus, medial temporal lobes (MTL), and occipito-temporal cortex were associated with time disorientation (r = 0.264, p < 0.001). Lesion network mapping using normative connectome data demonstrated that these regional findings occurred along a network that includes white and gray matter connecting the precuneus and MTL. There was a strong behavioral and anatomical association of time disorientation with memory impairment, such that the 2 processes could not be fully disentangled. INTERPRETATION We interpret these findings as novel evidence for a network involving the precuneus and the medial temporal lobe in supporting time orientation. ANN NEUROL 2023;94:421-433.
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Affiliation(s)
- Jax Skye
- Department of Neurology, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA
- Department of Pediatrics, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA
- Department of Psychiatry, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA
- Department of Psychological and Brain Sciences, University of Iowa, Iowa City, Iowa, USA
| | - Joel Bruss
- Department of Neurology, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA
| | - Guillaume Herbet
- Institute of Functional Genomics, University of Montpellier, CNRS, INSERM, Montpellier, France
- Department of Neurosurgery, Montpellier University Medical Center, Gui de Chauliac Hospital, Montpellier, France
| | - Daniel Tranel
- Department of Neurology, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA
- Department of Psychological and Brain Sciences, University of Iowa, Iowa City, Iowa, USA
| | - Aaron D. Boes
- Department of Neurology, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA
- Department of Pediatrics, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA
- Department of Psychiatry, University of Iowa Carver College of Medicine, University of Iowa, Iowa City, Iowa, USA
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27
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Robinson JC, Wilmot JH, Hasselmo ME. Septo-hippocampal dynamics and the encoding of space and time. Trends Neurosci 2023; 46:712-725. [PMID: 37479632 PMCID: PMC10538955 DOI: 10.1016/j.tins.2023.06.004] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/18/2023] [Revised: 05/12/2023] [Accepted: 06/27/2023] [Indexed: 07/23/2023]
Abstract
Encoding an event in memory requires neural activity to represent multiple dimensions of behavioral experience in space and time. Recent experiments have explored the influence of neural dynamics regulated by the medial septum on the functional encoding of space and time by neurons in the hippocampus and associated structures. This review addresses these dynamics, focusing on the role of theta rhythm, the differential effects of septal inactivation and activation on the functional coding of space and time by individual neurons, and the influence on phase coding that appears as phase precession. We also discuss data indicating that theta rhythm plays a role in timing the internal dynamics of memory encoding and retrieval, as well as the behavioral influences of these neuronal manipulations with regard to memory function.
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Affiliation(s)
- Jennifer C Robinson
- Center for Systems Neuroscience, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA.
| | - Jacob H Wilmot
- Center for Systems Neuroscience, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA.
| | - Michael E Hasselmo
- Center for Systems Neuroscience, Boston University, 610 Commonwealth Avenue, Boston, MA 02215, USA.
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28
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Zhou S, Seay M, Taxidis J, Golshani P, Buonomano DV. Multiplexing working memory and time in the trajectories of neural networks. Nat Hum Behav 2023; 7:1170-1184. [PMID: 37081099 PMCID: PMC10913811 DOI: 10.1038/s41562-023-01592-y] [Citation(s) in RCA: 10] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/08/2022] [Accepted: 03/22/2023] [Indexed: 04/22/2023]
Abstract
Working memory (WM) and timing are generally considered distinct cognitive functions, but similar neural signatures have been implicated in both. To explore the hypothesis that WM and timing may rely on shared neural mechanisms, we used psychophysical tasks that contained either task-irrelevant timing or WM components. In both cases, the task-irrelevant component influenced performance. We then developed recurrent neural network (RNN) simulations that revealed that cue-specific neural sequences, which multiplexed WM and time, emerged as the dominant regime that captured the behavioural findings. During training, RNN dynamics transitioned from low-dimensional ramps to high-dimensional neural sequences, and depending on task requirements, steady-state or ramping activity was also observed. Analysis of RNN structure revealed that neural sequences relied primarily on inhibitory connections, and could survive the deletion of all excitatory-to-excitatory connections. Our results indicate that in some instances WM is encoded in time-varying neural activity because of the importance of predicting when WM will be used.
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Affiliation(s)
- Shanglin Zhou
- Department of Neurobiology, David Geffen School of Medicine, University of California, Los Angeles, CA, USA
| | - Michael Seay
- Department of Psychology, University of California, Los Angeles, CA, USA
| | - Jiannis Taxidis
- Program in Neurosciences and Mental Health, Hospital for Sick Children, Toronto, Ontario, Canada
- Department of Physiology, University of Toronto, Toronto, Ontario, Canada
| | - Peyman Golshani
- Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA
- Integrative Center for Learning and Memory, Brain Research Institute, University of California, Los Angeles, Los Angeles, CA, USA
- UCLA Semel Institute for Neuroscience and Behavioral Sciences, University of California, Los Angeles, Los Angeles, CA, USA
- West Los Angeles VA Medical Center, Los Angeles, CA, USA
| | - Dean V Buonomano
- Department of Neurobiology, David Geffen School of Medicine, University of California, Los Angeles, CA, USA.
- Department of Psychology, University of California, Los Angeles, CA, USA.
- Department of Neurology, David Geffen School of Medicine, University of California, Los Angeles, Los Angeles, CA, USA.
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29
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Hines M, Poulter S, Douchamps V, Pibiri F, McGregor A, Lever C. Frequency matters: how changes in hippocampal theta frequency can influence temporal coding, anxiety-reduction, and memory. Front Syst Neurosci 2023; 16:998116. [PMID: 36817946 PMCID: PMC9936826 DOI: 10.3389/fnsys.2022.998116] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/19/2022] [Accepted: 12/30/2022] [Indexed: 02/05/2023] Open
Abstract
Hippocampal theta frequency is a somewhat neglected topic relative to theta power, phase, coherence, and cross-frequency coupling. Accordingly, here we review and present new data on variation in hippocampal theta frequency, focusing on functional associations (temporal coding, anxiety reduction, learning, and memory). Taking the rodent hippocampal theta frequency to running-speed relationship as a model, we identify two doubly-dissociable frequency components: (a) the slope component of the theta frequency-to-stimulus-rate relationship ("theta slope"); and (b) its y-intercept frequency ("theta intercept"). We identify three tonic determinants of hippocampal theta frequency. (1) Hotter temperatures increase theta frequency, potentially consistent with time intervals being judged as shorter when hot. Initial evidence suggests this occurs via the "theta slope" component. (2) Anxiolytic drugs with widely-different post-synaptic and pre-synaptic primary targets share the effect of reducing the "theta intercept" component, supporting notions of a final common pathway in anxiety reduction involving the hippocampus. (3) Novelty reliably decreases, and familiarity increases, theta frequency, acting upon the "theta slope" component. The reliability of this latter finding, and the special status of novelty for learning, prompts us to propose a Novelty Elicits Slowing of Theta frequency (NEST) hypothesis, involving the following elements: (1) Theta frequency slowing in the hippocampal formation is a generalised response to novelty of different types and modalities; (2) Novelty-elicited theta slowing is a hippocampal-formation-wide adaptive response functioning to accommodate the additional need for learning entailed by novelty; (3) Lengthening the theta cycle enhances associativity; (4) Even part-cycle lengthening may boost associativity; and (5) Artificial theta stimulation aimed at enhancing learning should employ low-end theta frequencies.
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30
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Omer DB, Las L, Ulanovsky N. Contextual and pure time coding for self and other in the hippocampus. Nat Neurosci 2023; 26:285-294. [PMID: 36585486 DOI: 10.1038/s41593-022-01226-y] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/10/2022] [Accepted: 10/31/2022] [Indexed: 12/31/2022]
Abstract
Navigation and episodic memory depend critically on representing temporal sequences. Hippocampal 'time cells' form temporal sequences, but it is unknown whether they represent context-dependent experience or time per se. Here we report on time cells in bat hippocampal area CA1, which, surprisingly, formed two distinct populations. One population of time cells generated different temporal sequences when the bat hung at different locations, thus conjunctively encoding spatial context and time-'contextual time cells'. A second population exhibited similar preferred times across different spatial contexts, thus purely encoding elapsed time. When examining neural responses after the landing moment of another bat, in a social imitation task, we found time cells that encoded temporal sequences aligned to the other's landing. We propose that these diverse time codes may support the perception of interval timing, episodic memory and temporal coordination between self and others.
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Affiliation(s)
- David B Omer
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel.
- Edmond and Lily Safra Center for Brain Sciences, Hebrew University of Jerusalem, Jerusalem, Israel.
| | - Liora Las
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel
| | - Nachum Ulanovsky
- Department of Brain Sciences, Weizmann Institute of Science, Rehovot, Israel.
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31
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De Corte BJ, Akdoğan B, Balsam PD. Temporal scaling and computing time in neural circuits: Should we stop watching the clock and look for its gears? Front Behav Neurosci 2022; 16:1022713. [PMID: 36570701 PMCID: PMC9773401 DOI: 10.3389/fnbeh.2022.1022713] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/18/2022] [Accepted: 10/31/2022] [Indexed: 12/13/2022] Open
Abstract
Timing underlies a variety of functions, from walking to perceiving causality. Neural timing models typically fall into one of two categories-"ramping" and "population-clock" theories. According to ramping models, individual neurons track time by gradually increasing or decreasing their activity as an event approaches. To time different intervals, ramping neurons adjust their slopes, ramping steeply for short intervals and vice versa. In contrast, according to "population-clock" models, multiple neurons track time as a group, and each neuron can fire nonlinearly. As each neuron changes its rate at each point in time, a distinct pattern of activity emerges across the population. To time different intervals, the brain learns the population patterns that coincide with key events. Both model categories have empirical support. However, they often differ in plausibility when applied to certain behavioral effects. Specifically, behavioral data indicate that the timing system has a rich computational capacity, allowing observers to spontaneously compute novel intervals from previously learned ones. In population-clock theories, population patterns map to time arbitrarily, making it difficult to explain how different patterns can be computationally combined. Ramping models are viewed as more plausible, assuming upstream circuits can set the slope of ramping neurons according to a given computation. Critically, recent studies suggest that neurons with nonlinear firing profiles often scale to time different intervals-compressing for shorter intervals and stretching for longer ones. This "temporal scaling" effect has led to a hybrid-theory where, like a population-clock model, population patterns encode time, yet like a ramping neuron adjusting its slope, the speed of each neuron's firing adapts to different intervals. Here, we argue that these "relative" population-clock models are as computationally plausible as ramping theories, viewing population-speed and ramp-slope adjustments as equivalent. Therefore, we view identifying these "speed-control" circuits as a key direction for evaluating how the timing system performs computations. Furthermore, temporal scaling highlights that a key distinction between different neural models is whether they propose an absolute or relative time-representation. However, we note that several behavioral studies suggest the brain processes both scales, cautioning against a dichotomy.
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Affiliation(s)
- Benjamin J. De Corte
- Department of Psychology, Columbia University, New York, NY, United States
- Division of Developmental Neuroscience, New York State Psychiatric Institute, New York, NY, United States
| | - Başak Akdoğan
- Department of Psychology, Columbia University, New York, NY, United States
- Division of Developmental Neuroscience, New York State Psychiatric Institute, New York, NY, United States
| | - Peter D. Balsam
- Department of Psychology, Columbia University, New York, NY, United States
- Division of Developmental Neuroscience, New York State Psychiatric Institute, New York, NY, United States
- Department of Neuroscience and Behavior, Barnard College, New York, NY, United States
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32
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Wang J, Tambini A, Lapate RC. The tie that binds: temporal coding and adaptive emotion. Trends Cogn Sci 2022; 26:1103-1118. [PMID: 36302710 DOI: 10.1016/j.tics.2022.09.005] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/12/2022] [Revised: 09/01/2022] [Accepted: 09/07/2022] [Indexed: 11/11/2022]
Abstract
Emotions are temporally dynamic, but the persistence of emotions outside of their appropriate temporal context is detrimental to health and well-being. Yet, precisely how temporal coding and emotional processing interact remains unclear. Recently unveiled temporal context representations in the hippocampus, entorhinal cortex (EC), and prefrontal cortex (PFC) support memory for what happened when. Here, we discuss how these neural temporal representations may interact with densely interconnected amygdala circuitry to shape emotional functioning. We propose a neuroanatomically informed framework suggesting that high-fidelity temporal representations linked to dynamic experiences promote emotion regulation and adaptive emotional memories. Then, we discuss how newly-identified synaptic and molecular features of amygdala-hippocampal projections suggest that intense, amygdala-dependent emotional responses may distort temporal-coding mechanisms. We conclude by identifying key avenues for future research.
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Affiliation(s)
- Jingyi Wang
- Department of Psychological & Brain Sciences, University of California, Santa Barbara, Santa Barbara, CA 93106, USA
| | - Arielle Tambini
- Center for Biomedical Imaging and Neuromodulation, Nathan Kline Institute for Psychiatric Research, Orangeburg, NY 10962, USA
| | - Regina C Lapate
- Department of Psychological & Brain Sciences, University of California, Santa Barbara, Santa Barbara, CA 93106, USA.
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33
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Billig AJ, Lad M, Sedley W, Griffiths TD. The hearing hippocampus. Prog Neurobiol 2022; 218:102326. [PMID: 35870677 PMCID: PMC10510040 DOI: 10.1016/j.pneurobio.2022.102326] [Citation(s) in RCA: 25] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/01/2022] [Revised: 06/08/2022] [Accepted: 07/18/2022] [Indexed: 11/17/2022]
Abstract
The hippocampus has a well-established role in spatial and episodic memory but a broader function has been proposed including aspects of perception and relational processing. Neural bases of sound analysis have been described in the pathway to auditory cortex, but wider networks supporting auditory cognition are still being established. We review what is known about the role of the hippocampus in processing auditory information, and how the hippocampus itself is shaped by sound. In examining imaging, recording, and lesion studies in species from rodents to humans, we uncover a hierarchy of hippocampal responses to sound including during passive exposure, active listening, and the learning of associations between sounds and other stimuli. We describe how the hippocampus' connectivity and computational architecture allow it to track and manipulate auditory information - whether in the form of speech, music, or environmental, emotional, or phantom sounds. Functional and structural correlates of auditory experience are also identified. The extent of auditory-hippocampal interactions is consistent with the view that the hippocampus makes broad contributions to perception and cognition, beyond spatial and episodic memory. More deeply understanding these interactions may unlock applications including entraining hippocampal rhythms to support cognition, and intervening in links between hearing loss and dementia.
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Affiliation(s)
| | - Meher Lad
- Translational and Clinical Research Institute, Newcastle University Medical School, Newcastle upon Tyne, UK
| | - William Sedley
- Translational and Clinical Research Institute, Newcastle University Medical School, Newcastle upon Tyne, UK
| | - Timothy D Griffiths
- Biosciences Institute, Newcastle University Medical School, Newcastle upon Tyne, UK; Wellcome Centre for Human Neuroimaging, UCL Queen Square Institute of Neurology, University College London, London, UK; Human Brain Research Laboratory, Department of Neurosurgery, University of Iowa Hospitals and Clinics, Iowa City, USA
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34
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Polti I, Nau M, Kaplan R, van Wassenhove V, Doeller CF. Rapid encoding of task regularities in the human hippocampus guides sensorimotor timing. eLife 2022; 11:e79027. [PMID: 36317500 PMCID: PMC9625083 DOI: 10.7554/elife.79027] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/28/2022] [Accepted: 10/02/2022] [Indexed: 11/17/2022] Open
Abstract
The brain encodes the statistical regularities of the environment in a task-specific yet flexible and generalizable format. Here, we seek to understand this process by bridging two parallel lines of research, one centered on sensorimotor timing, and the other on cognitive mapping in the hippocampal system. By combining functional magnetic resonance imaging (fMRI) with a fast-paced time-to-contact (TTC) estimation task, we found that the hippocampus signaled behavioral feedback received in each trial as well as performance improvements across trials along with reward-processing regions. Critically, it signaled performance improvements independent from the tested intervals, and its activity accounted for the trial-wise regression-to-the-mean biases in TTC estimation. This is in line with the idea that the hippocampus supports the rapid encoding of temporal context even on short time scales in a behavior-dependent manner. Our results emphasize the central role of the hippocampus in statistical learning and position it at the core of a brain-wide network updating sensorimotor representations in real time for flexible behavior.
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Affiliation(s)
- Ignacio Polti
- Kavli Institute for Systems Neuroscience, Centre for Neural Computation, The Egil and Pauline Braathen and Fred Kavli Centre for Cortical Microcircuits, Jebsen Centre for Alzheimer’s Disease, Norwegian University of Science and TechnologyTrondheimNorway
- Max Planck Institute for Human Cognitive and Brain SciencesLeipzigGermany
| | - Matthias Nau
- Kavli Institute for Systems Neuroscience, Centre for Neural Computation, The Egil and Pauline Braathen and Fred Kavli Centre for Cortical Microcircuits, Jebsen Centre for Alzheimer’s Disease, Norwegian University of Science and TechnologyTrondheimNorway
- Max Planck Institute for Human Cognitive and Brain SciencesLeipzigGermany
| | - Raphael Kaplan
- Kavli Institute for Systems Neuroscience, Centre for Neural Computation, The Egil and Pauline Braathen and Fred Kavli Centre for Cortical Microcircuits, Jebsen Centre for Alzheimer’s Disease, Norwegian University of Science and TechnologyTrondheimNorway
- Department of Basic Psychology, Clinical Psychology, and Psychobiology, Universitat Jaume ICastellón de la PlanaSpain
| | - Virginie van Wassenhove
- CEA DRF/Joliot, NeuroSpin; INSERM, Cognitive Neuroimaging Unit; CNRS, Université Paris-SaclayGif-Sur-YvetteFrance
| | - Christian F Doeller
- Kavli Institute for Systems Neuroscience, Centre for Neural Computation, The Egil and Pauline Braathen and Fred Kavli Centre for Cortical Microcircuits, Jebsen Centre for Alzheimer’s Disease, Norwegian University of Science and TechnologyTrondheimNorway
- Max Planck Institute for Human Cognitive and Brain SciencesLeipzigGermany
- Wilhelm Wundt Institute of Psychology, Leipzig UniversityLeipzigGermany
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35
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Jakob AMV, Mikhael JG, Hamilos AE, Assad JA, Gershman SJ. Dopamine mediates the bidirectional update of interval timing. Behav Neurosci 2022; 136:445-452. [PMID: 36222637 PMCID: PMC9725808 DOI: 10.1037/bne0000529] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/03/2023]
Abstract
The role of dopamine (DA) as a reward prediction error (RPE) signal in reinforcement learning (RL) tasks has been well-established over the past decades. Recent work has shown that the RPE interpretation can also account for the effects of DA on interval timing by controlling the speed of subjective time. According to this theory, the timing of the dopamine signal relative to reward delivery dictates whether subjective time speeds up or slows down: Early DA signals speed up subjective time and late signals slow it down. To test this bidirectional prediction, we reanalyzed measurements of dopaminergic neurons in the substantia nigra pars compacta of mice performing a self-timed movement task. Using the slope of ramping dopamine activity as a readout of subjective time speed, we found that trial-by-trial changes in the slope could be predicted from the timing of dopamine activity on the previous trial. This result provides a key piece of evidence supporting a unified computational theory of RL and interval timing. (PsycInfo Database Record (c) 2022 APA, all rights reserved).
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Affiliation(s)
- Anthony M V Jakob
- Section of Life Sciences Engineering, École Polytechnique Fédérale de Lausanne
| | | | | | - John A Assad
- Department of Neurobiology, Harvard Medical School
| | - Samuel J Gershman
- Department of Psychology and Center for Brain Science, Harvard University
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36
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Zhou S, Buonomano DV. Neural population clocks: Encoding time in dynamic patterns of neural activity. Behav Neurosci 2022; 136:374-382. [PMID: 35446093 PMCID: PMC9561006 DOI: 10.1037/bne0000515] [Citation(s) in RCA: 4] [Impact Index Per Article: 1.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/08/2022]
Abstract
The ability to predict and prepare for near- and far-future events is among the most fundamental computations the brain performs. Because of the importance of time for prediction and sensorimotor processing, the brain has evolved multiple mechanisms to tell and encode time across scales ranging from microseconds to days and beyond. Converging experimental and computational data indicate that, on the scale of seconds, timing relies on diverse neural mechanisms distributed across different brain areas. Among the different encoding mechanisms on the scale of seconds, we distinguish between neural population clocks and ramping activity as distinct strategies to encode time. One instance of neural population clocks, neural sequences, represents in some ways an optimal and flexible dynamic regime for the encoding of time. Specifically, neural sequences comprise a high-dimensional representation that can be used by downstream areas to flexibly generate arbitrarily simple and complex output patterns using biologically plausible learning rules. We propose that high-level integration areas may use high-dimensional dynamics such as neural sequences to encode time, providing downstream areas information to build low-dimensional ramp-like activity that can drive movements and temporal expectation. (PsycInfo Database Record (c) 2022 APA, all rights reserved).
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Affiliation(s)
- Shanglin Zhou
- Department of Neurobiology, University of California, Los Angeles, CA 90095, USA
| | - Dean V. Buonomano
- Department of Neurobiology, University of California, Los Angeles, CA 90095, USA
- Department of Psychology, University of California, Los Angeles, CA 90095, USA
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37
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Rabinovich RJ, Kato DD, Bruno RM. Learning enhances encoding of time and temporal surprise in mouse primary sensory cortex. Nat Commun 2022; 13:5504. [PMID: 36127340 PMCID: PMC9489862 DOI: 10.1038/s41467-022-33141-y] [Citation(s) in RCA: 17] [Impact Index Per Article: 5.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/23/2021] [Accepted: 09/02/2022] [Indexed: 11/09/2022] Open
Abstract
Primary sensory cortex has long been believed to play a straightforward role in the initial processing of sensory information. Yet, the superficial layers of cortex overall are sparsely active, even during sensory stimulation; additionally, cortical activity is influenced by other modalities, task context, reward, and behavioral state. Our study demonstrates that reinforcement learning dramatically alters representations among longitudinally imaged neurons in superficial layers of mouse primary somatosensory cortex. Learning an object detection task recruits previously unresponsive neurons, enlarging the neuronal population sensitive to touch and behavioral choice. Cortical responses decrease upon repeated stimulus presentation outside of the behavioral task. Moreover, training improves population encoding of the passage of time, and unexpected deviations in trial timing elicit even stronger responses than touches do. In conclusion, the superficial layers of sensory cortex exhibit a high degree of learning-dependent plasticity and are strongly modulated by non-sensory but behaviorally-relevant features, such as timing and surprise. Activity in the superficial layers of the sensory cortex is believed to be largely driven by incoming sensory stimuli. Here the authors demonstrate how learning changes neural responses to sensations according to both behavioral relevance and timing, suggesting a high degree of non-sensory modulation.
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Affiliation(s)
- Rebecca J Rabinovich
- Department of Neuroscience, Columbia University, New York, NY, 10027, USA.,Kavli Institute for Brain Science, Columbia University, New York, NY, 10027, USA.,Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, 10027, USA
| | - Daniel D Kato
- Department of Neuroscience, Columbia University, New York, NY, 10027, USA.,Kavli Institute for Brain Science, Columbia University, New York, NY, 10027, USA.,Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, 10027, USA
| | - Randy M Bruno
- Department of Neuroscience, Columbia University, New York, NY, 10027, USA. .,Kavli Institute for Brain Science, Columbia University, New York, NY, 10027, USA. .,Zuckerman Mind Brain Behavior Institute, Columbia University, New York, NY, 10027, USA. .,Department of Physiology, Anatomy & Genetics, University of Oxford, Oxford, UK.
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38
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Tsao A, Yousefzadeh SA, Meck WH, Moser MB, Moser EI. The neural bases for timing of durations. Nat Rev Neurosci 2022; 23:646-665. [PMID: 36097049 DOI: 10.1038/s41583-022-00623-3] [Citation(s) in RCA: 27] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/19/2022] [Indexed: 11/10/2022]
Abstract
Durations are defined by a beginning and an end, and a major distinction is drawn between durations that start in the present and end in the future ('prospective timing') and durations that start in the past and end either in the past or the present ('retrospective timing'). Different psychological processes are thought to be engaged in each of these cases. The former is thought to engage a clock-like mechanism that accurately tracks the continuing passage of time, whereas the latter is thought to engage a reconstructive process that utilizes both temporal and non-temporal information from the memory of past events. We propose that, from a biological perspective, these two forms of duration 'estimation' are supported by computational processes that are both reliant on population state dynamics but are nevertheless distinct. Prospective timing is effectively carried out in a single step where the ongoing dynamics of population activity directly serve as the computation of duration, whereas retrospective timing is carried out in two steps: the initial generation of population state dynamics through the process of event segmentation and the subsequent computation of duration utilizing the memory of those dynamics.
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Affiliation(s)
- Albert Tsao
- Department of Biology, Stanford University, Stanford, CA, USA.
| | | | - Warren H Meck
- Department of Psychology and Neuroscience, Duke University, Durham, NC, USA
| | - May-Britt Moser
- Centre for Neural Computation, Kavli Institute for Systems Neuroscience, Norwegian University of Science and Technology, Trondheim, Norway
| | - Edvard I Moser
- Centre for Neural Computation, Kavli Institute for Systems Neuroscience, Norwegian University of Science and Technology, Trondheim, Norway.
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39
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Abstract
When navigating through space, we must maintain a representation of our position in real time; when recalling a past episode, a memory can come back in a flash. Interestingly, the brain's spatial representation system, including the hippocampus, supports these two distinct timescale functions. How are neural representations of space used in the service of both real-world navigation and internal mnemonic processes? Recent progress has identified sequences of hippocampal place cells, evolving at multiple timescales in accordance with either navigational behaviors or internal oscillations, that underlie these functions. We review experimental findings on experience-dependent modulation of these sequential representations and consider how they link real-world navigation to time-compressed memories. We further discuss recent work suggesting the prevalence of these sequences beyond hippocampus and propose that these multiple-timescale mechanisms may represent a general algorithm for organizing cell assemblies, potentially unifying the dual roles of the spatial representation system in memory and navigation.
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Affiliation(s)
- Wenbo Tang
- Graduate Program in Neuroscience, Brandeis University, Waltham, Massachusetts, USA;
| | - Shantanu P Jadhav
- Neuroscience Program, Department of Psychology, and Volen National Center for Complex Systems, Brandeis University, Waltham, Massachusetts, USA;
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40
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Green L, Tingley D, Rinzel J, Buzsáki G. Action-driven remapping of hippocampal neuronal populations in jumping rats. Proc Natl Acad Sci U S A 2022; 119:e2122141119. [PMID: 35737843 PMCID: PMC9245695 DOI: 10.1073/pnas.2122141119] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/07/2021] [Accepted: 05/03/2022] [Indexed: 12/24/2022] Open
Abstract
The current dominant view of the hippocampus is that it is a navigation "device" guided by environmental inputs. Yet, a critical aspect of navigation is a sequence of planned, coordinated actions. We examined the role of action in the neuronal organization of the hippocampus by training rats to jump a gap on a linear track. Recording local field potentials and ensembles of single units in the hippocampus, we found that jumping produced a stereotypic behavior associated with consistent electrophysiological patterns, including phase reset of theta oscillations, predictable global firing-rate changes, and population vector shifts of hippocampal neurons. A subset of neurons ("jump cells") were systematically affected by the gap but only in one direction of travel. Novel place fields emerged and others were either boosted or attenuated by jumping, yet the theta spike phase versus animal position relationship remained unaltered. Thus, jumping involves an action plan for the animal to traverse the same route as without jumping, which is faithfully tracked by hippocampal neuronal activity.
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Affiliation(s)
- Laura Green
- Neuroscience Institute, Langone Medical Center, New York University, New York, NY 10016
- Center for Neural Science, New York University, New York, NY 10003
| | - David Tingley
- Neuroscience Institute, Langone Medical Center, New York University, New York, NY 10016
| | - John Rinzel
- Center for Neural Science, New York University, New York, NY 10003
- Courant Institute for Mathematical Sciences, New York University, New York, NY 10012
| | - György Buzsáki
- Neuroscience Institute, Langone Medical Center, New York University, New York, NY 10016
- Center for Neural Science, New York University, New York, NY 10003
- Department of Neurology, Langone Medical Center, New York University, New York, NY 10016
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41
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Bellmund JLS, Deuker L, Montijn ND, Doeller CF. Mnemonic construction and representation of temporal structure in the hippocampal formation. Nat Commun 2022; 13:3395. [PMID: 35739096 PMCID: PMC9226117 DOI: 10.1038/s41467-022-30984-3] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Accepted: 05/20/2022] [Indexed: 11/10/2022] Open
Abstract
The hippocampal-entorhinal region supports memory for episodic details, such as temporal relations of sequential events, and mnemonic constructions combining experiences for inferential reasoning. However, it is unclear whether hippocampal event memories reflect temporal relations derived from mnemonic constructions, event order, or elapsing time, and whether these sequence representations generalize temporal relations across similar sequences. Here, participants mnemonically constructed times of events from multiple sequences using infrequent cues and their experience of passing time. After learning, event representations in the anterior hippocampus reflected temporal relations based on constructed times. Temporal relations were generalized across sequences, revealing distinct representational formats for events from the same or different sequences. Structural knowledge about time patterns, abstracted from different sequences, biased the construction of specific event times. These findings demonstrate that mnemonic construction and the generalization of relational knowledge combine in the hippocampus, consistent with the simulation of scenarios from episodic details and structural knowledge.
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Affiliation(s)
- Jacob L S Bellmund
- Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.
| | - Lorena Deuker
- Donders Institute for Brain, Cognition and Behaviour, Radboud University, Nijmegen, The Netherlands
| | - Nicole D Montijn
- Department of Clinical Psychology, Utrecht University, Utrecht, The Netherlands
| | - Christian F Doeller
- Max Planck Institute for Human Cognitive and Brain Sciences, Leipzig, Germany.
- Kavli Institute for Systems Neuroscience, Centre for Neural Computation, The Egil and Pauline Braathen and Fred Kavli Centre for Cortical Microcircuits, Jebsen Centre for Alzheimer's Disease, Norwegian University of Science and Technology, Trondheim, Norway.
- Wilhelm Wundt Institute of Psychology, Leipzig University, Leipzig, Germany.
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42
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Encoding time in neural dynamic regimes with distinct computational tradeoffs. PLoS Comput Biol 2022; 18:e1009271. [PMID: 35239644 PMCID: PMC8893702 DOI: 10.1371/journal.pcbi.1009271] [Citation(s) in RCA: 15] [Impact Index Per Article: 5.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/02/2021] [Accepted: 02/08/2022] [Indexed: 11/19/2022] Open
Abstract
Converging evidence suggests the brain encodes time in dynamic patterns of neural activity, including neural sequences, ramping activity, and complex dynamics. Most temporal tasks, however, require more than just encoding time, and can have distinct computational requirements including the need to exhibit temporal scaling, generalize to novel contexts, or robustness to noise. It is not known how neural circuits can encode time and satisfy distinct computational requirements, nor is it known whether similar patterns of neural activity at the population level can exhibit dramatically different computational or generalization properties. To begin to answer these questions, we trained RNNs on two timing tasks based on behavioral studies. The tasks had different input structures but required producing identically timed output patterns. Using a novel framework we quantified whether RNNs encoded two intervals using either of three different timing strategies: scaling, absolute, or stimulus-specific dynamics. We found that similar neural dynamic patterns at the level of single intervals, could exhibit fundamentally different properties, including, generalization, the connectivity structure of the trained networks, and the contribution of excitatory and inhibitory neurons. Critically, depending on the task structure RNNs were better suited for generalization or robustness to noise. Further analysis revealed different connection patterns underlying the different regimes. Our results predict that apparently similar neural dynamic patterns at the population level (e.g., neural sequences) can exhibit fundamentally different computational properties in regards to their ability to generalize to novel stimuli and their robustness to noise—and that these differences are associated with differences in network connectivity and distinct contributions of excitatory and inhibitory neurons. We also predict that the task structure used in different experimental studies accounts for some of the experimentally observed variability in how networks encode time. The ability to tell time and anticipate when external events will occur are among the most fundamental computations the brain performs. Converging evidence suggests the brain encodes time through changing patterns of neural activity. Different temporal tasks, however, have distinct computational requirements, such as the need to flexibly scale temporal patterns or generalize to novel inputs. To understand how networks can encode time and satisfy different computational requirements we trained recurrent neural networks (RNNs) on two timing tasks that have previously been used in behavioral studies. Both tasks required producing identically timed output patterns. Using a novel framework to quantify how networks encode different intervals, we found that similar patterns of neural activity—neural sequences—were associated with fundamentally different underlying mechanisms, including the connectivity patterns of the RNNs. Critically, depending on the task the RNNs were trained on, they were better suited for generalization or robustness to noise. Our results predict that similar patterns of neural activity can be produced by distinct RNN configurations, which in turn have fundamentally different computational tradeoffs. Our results also predict that differences in task structure account for some of the experimentally observed variability in how networks encode time.
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43
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Aguilar-Canto F, Calvo H. A Hebbian Approach to Non-Spatial Prelinguistic Reasoning. Brain Sci 2022; 12:brainsci12020281. [PMID: 35204044 PMCID: PMC8870645 DOI: 10.3390/brainsci12020281] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2022] [Revised: 02/12/2022] [Accepted: 02/15/2022] [Indexed: 02/01/2023] Open
Abstract
This research integrates key concepts of Computational Neuroscience, including the Bienestock-CooperMunro (BCM) rule, Spike Timing-Dependent Plasticity Rules (STDP), and the Temporal Difference Learning algorithm, with an important structure of Deep Learning (Convolutional Networks) to create an architecture with the potential of replicating observations of some cognitive experiments (particularly, those that provided some basis for sequential reasoning) while sharing the advantages already achieved by the previous proposals. In particular, we present Ring Model B, which is capable of associating visual with auditory stimulus, performing sequential predictions, and predicting reward from experience. Despite its simplicity, we considered such abilities to be a first step towards the formulation of more general models of prelinguistic reasoning.
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44
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Lee H. Toward the biological model of the hippocampus as the successor representation agent. Biosystems 2022; 213:104612. [DOI: 10.1016/j.biosystems.2022.104612] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.7] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/26/2021] [Revised: 01/02/2022] [Accepted: 01/17/2022] [Indexed: 11/26/2022]
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45
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Dias M, Ferreira R, Remondes M. Medial Entorhinal Cortex Excitatory Neurons Are Necessary for Accurate Timing. J Neurosci 2021; 41:9932-9943. [PMID: 34670849 PMCID: PMC8638688 DOI: 10.1523/jneurosci.0750-21.2021] [Citation(s) in RCA: 3] [Impact Index Per Article: 0.8] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/08/2021] [Revised: 09/03/2021] [Accepted: 09/28/2021] [Indexed: 11/21/2022] Open
Abstract
The hippocampal region has long been considered critical for memory of time, and recent evidence shows that network operations and single-unit activity in the hippocampus and medial entorhinal cortex (MEC) correlate with elapsed time. However, whether MEC activity is necessary for timing remains largely unknown. Here we expressed DREADDs (designer receptors exclusively activated by designer drugs) under the CaMKIIa promoter to preferentially target MEC excitatory neurons for chemogenetic silencing, while freely moving male rats reproduced a memorized time interval by waiting inside a region of interest. We found that such silencing impaired the reproduction of the memorized interval and led to an overestimation of elapsed time. Trial history analyses under this condition revealed a reduced influence of previous trials on current waiting times, suggesting an impairment in maintaining temporal memories across trials. Moreover, using GLM (logistic regression), we show that decoding behavioral performance from preceding waiting times was significantly compromised when MEC was silenced. In addition to revealing an important role of MEC excitatory neurons for timing behavior, our results raise the possibility that these neurons contribute to such behavior by holding temporal information across trials.SIGNIFICANCE STATEMENT Medial temporal lobe (MTL) structures are implicated in processing temporal information. However, little is known about the role MTL structures, such as the hippocampus and the entorhinal cortex, play in perceiving or reproducing temporal intervals. By chemogenetically silencing medial entorhinal cortex (MEC) excitatory activity during a timing task, we show that this structure is necessary for the accurate reproduction of temporal intervals. Furthermore, trial history analyses suggest that silencing MEC disrupts memory mechanisms during timing. Together, these results suggest that MEC is necessary for timing behavior, possibly by representing the target interval in memory.
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Affiliation(s)
- Marcelo Dias
- Instituto de Medicina Molecular João Lobo Antunes, Faculdade de Medicina, Universidade de Lisboa, 1649-028 Lisbon, Portugal
| | - Raquel Ferreira
- Instituto de Medicina Molecular João Lobo Antunes, Faculdade de Medicina, Universidade de Lisboa, 1649-028 Lisbon, Portugal
| | - Miguel Remondes
- Instituto de Medicina Molecular João Lobo Antunes, Faculdade de Medicina, Universidade de Lisboa, 1649-028 Lisbon, Portugal
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46
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Ross TW, Easton A. The Hippocampal Horizon: Constructing and Segmenting Experience for Episodic Memory. Neurosci Biobehav Rev 2021; 132:181-196. [PMID: 34826509 DOI: 10.1016/j.neubiorev.2021.11.038] [Citation(s) in RCA: 14] [Impact Index Per Article: 3.5] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/04/2021] [Revised: 11/19/2021] [Accepted: 11/22/2021] [Indexed: 12/29/2022]
Abstract
How do we recollect specific events that have occurred during continuous ongoing experience? There is converging evidence from non-human animals that spatially modulated cellular activity of the hippocampal formation supports the construction of ongoing events. On the other hand, recent human oriented event cognition models have outlined that our experience is segmented into discrete units, and that such segmentation can operate on shorter or longer timescales. Here, we describe a unification of how these dynamic physiological mechanisms of the hippocampus relate to ongoing externally and internally driven event segmentation, facilitating the demarcation of specific moments during experience. Our cross-species interdisciplinary approach offers a novel perspective in the way we construct and remember specific events, leading to the generation of many new hypotheses for future research.
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Affiliation(s)
- T W Ross
- Department of Psychology, Durham University, South Road, Durham, DH1 3LE, United Kingdom; Centre for Learning and Memory Processes, Durham University, United Kingdom.
| | - A Easton
- Department of Psychology, Durham University, South Road, Durham, DH1 3LE, United Kingdom; Centre for Learning and Memory Processes, Durham University, United Kingdom
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47
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Memory Disorders Related to Hippocampal Function: The Interest of 5-HT 4Rs Targeting. Int J Mol Sci 2021; 22:ijms222112082. [PMID: 34769511 PMCID: PMC8584667 DOI: 10.3390/ijms222112082] [Citation(s) in RCA: 15] [Impact Index Per Article: 3.8] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/09/2021] [Revised: 10/30/2021] [Accepted: 11/03/2021] [Indexed: 11/16/2022] Open
Abstract
The hippocampus has long been considered as a key structure for memory processes. Multilevel alterations of hippocampal function have been identified as a common denominator of memory impairments in a number of psychiatric and neurodegenerative diseases. For many years, the glutamatergic and cholinergic systems have been the main targets of therapeutic treatments against these symptoms. However, the high rate of drug development failures has left memory impairments on the sideline of current therapeutic strategies. This underscores the urgent need to focus on new therapeutic targets for memory disorders, such as type 4 serotonin receptors (5-HT4Rs). Ever since the discovery of their expression in the hippocampus, 5-HT4Rs have gained growing interest for potential use in the treatment of learning and memory impairments. To date, much of the researched information gathered by scientists from both animal models and humans converge on pro-mnesic and anti-amnesic properties of 5-HT4Rs activation, although the mechanisms at work require more work to be fully understood. This review addresses a fundamental, yet poorly understood set of evidence of the potential of 5-HT4Rs to re-establish or limit hippocampal alterations related to neurological diseases. Most importantly, the potential of 5-HT4Rs is translated by refining hypotheses regarding the benefits of their activation in memory disorders at the hippocampal level.
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48
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Wu J, Zhou M, Qin K, Liao S, Tang C, Ruan Y, Hu X, Long F, Mo K, Kuang H, Deng R. Microscopic anatomical atlas study on the lateral ventricles of the rabbit cerebrum and its related structures. TRANSLATIONAL RESEARCH IN ANATOMY 2021. [DOI: 10.1016/j.tria.2021.100140] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/28/2022] Open
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49
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Parra-Barrero E, Diba K, Cheng S. Neuronal sequences during theta rely on behavior-dependent spatial maps. eLife 2021; 10:e70296. [PMID: 34661526 PMCID: PMC8565928 DOI: 10.7554/elife.70296] [Citation(s) in RCA: 2] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/12/2021] [Accepted: 10/15/2021] [Indexed: 11/15/2022] Open
Abstract
Navigation through space involves learning and representing relationships between past, current, and future locations. In mammals, this might rely on the hippocampal theta phase code, where in each cycle of the theta oscillation, spatial representations provided by neuronal sequences start behind the animal's true location and then sweep forward. However, the exact relationship between theta phase, represented position and true location remains unclear and even paradoxical. Here, we formalize previous notions of 'spatial' or 'temporal' theta sweeps that have appeared in the literature. We analyze single-cell and population variables in unit recordings from rat CA1 place cells and compare them to model simulations based on each of these schemes. We show that neither spatial nor temporal sweeps quantitatively accounts for how all relevant variables change with running speed. To reconcile these schemes with our observations, we introduce 'behavior-dependent' sweeps, in which theta sweep length and place field properties, such as size and phase precession, vary across the environment depending on the running speed characteristic of each location. These behavior-dependent spatial maps provide a structured heterogeneity that is essential for understanding the hippocampal code.
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Affiliation(s)
- Eloy Parra-Barrero
- Institute for Neural Computation, Ruhr University BochumBochumGermany
- International Graduate School of Neuroscience, Ruhr University BochumBochumGermany
| | - Kamran Diba
- Department of Anesthesiology, University of Michigan, Michigan MedicineAnn ArborUnited States
| | - Sen Cheng
- Institute for Neural Computation, Ruhr University BochumBochumGermany
- International Graduate School of Neuroscience, Ruhr University BochumBochumGermany
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50
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Rueckemann JW, Sosa M, Giocomo LM, Buffalo EA. The grid code for ordered experience. Nat Rev Neurosci 2021; 22:637-649. [PMID: 34453151 PMCID: PMC9371942 DOI: 10.1038/s41583-021-00499-9] [Citation(s) in RCA: 30] [Impact Index Per Article: 7.5] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Accepted: 07/08/2021] [Indexed: 02/07/2023]
Abstract
Entorhinal cortical grid cells fire in a periodic pattern that tiles space, which is suggestive of a spatial coordinate system. However, irregularities in the grid pattern as well as responses of grid cells in contexts other than spatial navigation have presented a challenge to existing models of entorhinal function. In this Perspective, we propose that hippocampal input provides a key informative drive to the grid network in both spatial and non-spatial circumstances, particularly around salient events. We build on previous models in which neural activity propagates through the entorhinal-hippocampal network in time. This temporal contiguity in network activity points to temporal order as a necessary characteristic of representations generated by the hippocampal formation. We advocate that interactions in the entorhinal-hippocampal loop build a topological representation that is rooted in the temporal order of experience. In this way, the structure of grid cell firing supports a learned topology rather than a rigid coordinate frame that is bound to measurements of the physical world.
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Affiliation(s)
- Jon W Rueckemann
- Department of Physiology and Biophysics, University of Washington School of Medicine, Seattle, WA, USA
- Washington National Primate Research Center, Seattle, WA, USA
| | - Marielena Sosa
- Department of Neurobiology, Stanford University School of Medicine, Stanford, CA, USA
| | - Lisa M Giocomo
- Department of Neurobiology, Stanford University School of Medicine, Stanford, CA, USA.
| | - Elizabeth A Buffalo
- Department of Physiology and Biophysics, University of Washington School of Medicine, Seattle, WA, USA.
- Washington National Primate Research Center, Seattle, WA, USA.
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