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For: Polinski JM, Zimin AV, Clark KF, Kohn AB, Sadowski N, Timp W, Ptitsyn A, Khanna P, Romanova DY, Williams P, Greenwood SJ, Moroz LL, Walt DR, Bodnar AG. The American lobster genome reveals insights on longevity, neural, and immune adaptations. Sci Adv 2021;7:7/26/eabe8290. [PMID: 34162536 PMCID: PMC8221624 DOI: 10.1126/sciadv.abe8290] [Citation(s) in RCA: 33] [Impact Index Per Article: 8.3] [Reference Citation Analysis] [What about the content of this article? (0)] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Received: 09/22/2020] [Accepted: 05/07/2021] [Indexed: 05/30/2023]
Number Cited by Other Article(s)
1
San Antonio C, Poynton H, Krick K, Hannigan R. Ocean warming and acidification alter calcification and innate immune system gene expression in juvenile American lobsters, Homarus americanus. COMPARATIVE BIOCHEMISTRY AND PHYSIOLOGY. PART D, GENOMICS & PROTEOMICS 2025;54:101404. [PMID: 39708720 DOI: 10.1016/j.cbd.2024.101404] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 09/25/2024] [Revised: 12/07/2024] [Accepted: 12/15/2024] [Indexed: 12/23/2024]
2
Sun D, Lv J, Gao B, Jia S, Liu P, Li J, Li J, Ren X. Chromosome-level genome assembly of scalloped spiny lobster Panulirus homarus homarus. Sci Data 2025;12:900. [PMID: 40436891 PMCID: PMC12120130 DOI: 10.1038/s41597-025-05253-9] [Citation(s) in RCA: 1] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2025] [Accepted: 05/21/2025] [Indexed: 06/01/2025]  Open
3
Chen P, Zhong Z, Jin WX, Sun J, Sun SC. Chromosome-scale assembly of Artemia tibetiana genome, first aquatic invertebrate genome from Tibet Plateau. Sci Data 2025;12:777. [PMID: 40355476 PMCID: PMC12069563 DOI: 10.1038/s41597-025-05136-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/07/2025] [Accepted: 05/01/2025] [Indexed: 05/14/2025]  Open
4
Fields L, Dang TC, Tran VNH, Ibarra AE, Li L. Decoding Neuropeptide Complexity: Advancing Neurobiological Insights from Invertebrates to Vertebrates through Evolutionary Perspectives. ACS Chem Neurosci 2025;16:1662-1679. [PMID: 40261092 DOI: 10.1021/acschemneuro.5c00053] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/24/2025]  Open
5
Di Girolamo D, Di Iorio E, Missero C. Molecular and Cellular Function of p63 in Skin Development and Genetic Diseases. J Invest Dermatol 2025;145:766-779. [PMID: 39340489 DOI: 10.1016/j.jid.2024.08.011] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/07/2024] [Revised: 08/02/2024] [Accepted: 08/16/2024] [Indexed: 09/30/2024]
6
Andersen LK, Thompson NF, Abernathy JW, Ahmed RO, Ali A, Al-Tobasei R, Beck BH, Calla B, Delomas TA, Dunham RA, Elsik CG, Fuller SA, García JC, Gavery MR, Hollenbeck CM, Johnson KM, Kunselman E, Legacki EL, Liu S, Liu Z, Martin B, Matt JL, May SA, Older CE, Overturf K, Palti Y, Peatman EJ, Peterson BC, Phelps MP, Plough LV, Polinski MP, Proestou DA, Purcell CM, Quiniou SMA, Raymo G, Rexroad CE, Riley KL, Roberts SB, Roy LA, Salem M, Simpson K, Waldbieser GC, Wang H, Waters CD, Reading BJ. Advancing genetic improvement in the omics era: status and priorities for United States aquaculture. BMC Genomics 2025;26:155. [PMID: 39962419 PMCID: PMC11834649 DOI: 10.1186/s12864-025-11247-z] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/26/2024] [Accepted: 01/15/2025] [Indexed: 02/20/2025]  Open
7
Zhang D, Sun X, Chen L, Lin L, Yin C, Yang W, Liu J, Liu Q, Zhang H, Jiang S, Li Y, Tang B, Wang G. The chromosome-level genome provides insights into the adaptive evolution of the visual system in Oratosquilla oratoria. BMC Biol 2025;23:38. [PMID: 39915724 PMCID: PMC11804072 DOI: 10.1186/s12915-025-02146-6] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 01/31/2024] [Accepted: 01/27/2025] [Indexed: 02/09/2025]  Open
8
Polinski JM, O’Donnell TP, Bodnar AG. Chromosome-level reference genome for the Jonah crab, Cancer borealis. G3 (BETHESDA, MD.) 2025;15:jkae254. [PMID: 39501747 PMCID: PMC11708212 DOI: 10.1093/g3journal/jkae254] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 07/31/2024] [Accepted: 10/22/2024] [Indexed: 01/11/2025]
9
Zhang Y, Yuan Y, Zhang M, Yu X, Qiu B, Wu F, Tocher DR, Zhang J, Ye S, Cui W, Leung JYS, Ikhwanuddin M, Waqas W, Dildar T, Ma H. High-resolution chromosome-level genome of Scylla paramamosain provides molecular insights into adaptive evolution in crabs. BMC Biol 2024;22:255. [PMID: 39511558 PMCID: PMC11545969 DOI: 10.1186/s12915-024-02054-1] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/26/2024] [Accepted: 10/25/2024] [Indexed: 11/15/2024]  Open
10
Liu S, Li M, Han C, Li S, Zhang J, Peng C, Zhang Y. Chromosome level genome assembly of giant freshwater prawn (Macrobrachium rosenbergii). Sci Data 2024;11:1181. [PMID: 39477970 PMCID: PMC11525972 DOI: 10.1038/s41597-024-04016-2] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/14/2024] [Accepted: 10/18/2024] [Indexed: 11/02/2024]  Open
11
Ho T, Eichner N, Sathapondecha P, Nantapojd T, Meister G, Udomkit A. Ago4-piRNA complex is a key component of genomic immune system against transposon expression in Penaeus monodon. FISH & SHELLFISH IMMUNOLOGY 2024;151:109693. [PMID: 38878913 DOI: 10.1016/j.fsi.2024.109693] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Subscribe] [Scholar Register] [Received: 01/10/2024] [Revised: 06/10/2024] [Accepted: 06/10/2024] [Indexed: 06/21/2024]
12
Unneberg P, Larsson M, Olsson A, Wallerman O, Petri A, Bunikis I, Vinnere Pettersson O, Papetti C, Gislason A, Glenner H, Cartes JE, Blanco-Bercial L, Eriksen E, Meyer B, Wallberg A. Ecological genomics in the Northern krill uncovers loci for local adaptation across ocean basins. Nat Commun 2024;15:6297. [PMID: 39090106 PMCID: PMC11294593 DOI: 10.1038/s41467-024-50239-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/06/2023] [Accepted: 05/15/2024] [Indexed: 08/04/2024]  Open
13
Jane A, Rasher DB, Waller J, Annis E, Frederich M. Rearing condition influences gene expression in postlarval American lobster (Homarus americanus). PLoS One 2024;19:e0307169. [PMID: 39024318 PMCID: PMC11257295 DOI: 10.1371/journal.pone.0307169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/11/2024] [Accepted: 07/01/2024] [Indexed: 07/20/2024]  Open
14
Lu G, Tran VNH, Wu W, Ma M, Li L. Neuropeptidomics of the American Lobster Homarus americanus. J Proteome Res 2024;23:1757-1767. [PMID: 38644788 PMCID: PMC11118981 DOI: 10.1021/acs.jproteome.3c00925] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/23/2024]
15
Polinski JM, Castellano KR, Buckley KM, Bodnar AG. Genomic signatures of exceptional longevity and negligible aging in the long-lived red sea urchin. Cell Rep 2024;43:114021. [PMID: 38564335 DOI: 10.1016/j.celrep.2024.114021] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/08/2023] [Revised: 02/12/2024] [Accepted: 03/15/2024] [Indexed: 04/04/2024]  Open
16
Buckley SJ, Nguyen TV, Cummins SF, Elizur A, Fitzgibbon QP, Smith GS, Mykles DL, Ventura T. Evaluating conserved domains and motifs of decapod gonadotropin-releasing hormone G protein-coupled receptor superfamily. Front Endocrinol (Lausanne) 2024;15:1348465. [PMID: 38444586 PMCID: PMC10912298 DOI: 10.3389/fendo.2024.1348465] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Figures] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Received: 12/02/2023] [Accepted: 01/18/2024] [Indexed: 03/07/2024]  Open
17
Hyde CJ, Ventura T. CrustyBase v.2.0: new features and enhanced utilities to support open science. BMC Genomics 2024;25:121. [PMID: 38281926 PMCID: PMC10823621 DOI: 10.1186/s12864-024-10033-7] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/24/2023] [Accepted: 01/20/2024] [Indexed: 01/30/2024]  Open
18
Groussman RD, Blaskowski S, Coesel SN, Armbrust EV. MarFERReT, an open-source, version-controlled reference library of marine microbial eukaryote functional genes. Sci Data 2023;10:926. [PMID: 38129449 PMCID: PMC10739892 DOI: 10.1038/s41597-023-02842-4] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Accepted: 12/08/2023] [Indexed: 12/23/2023]  Open
19
Wahl M, Levy T, Ventura T, Sagi A. Monosex Populations of the Giant Freshwater Prawn Macrobrachium rosenbergii-From a Pre-Molecular Start to the Next Generation Era. Int J Mol Sci 2023;24:17433. [PMID: 38139271 PMCID: PMC10743721 DOI: 10.3390/ijms242417433] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2023] [Revised: 10/27/2023] [Accepted: 11/21/2023] [Indexed: 12/24/2023]  Open
20
Dickinson PS, Powell DJ. Diversity of neuropeptidergic modulation in decapod crustacean cardiac and feeding systems. Curr Opin Neurobiol 2023;83:102802. [PMID: 37922667 DOI: 10.1016/j.conb.2023.102802] [Citation(s) in RCA: 2] [Impact Index Per Article: 1.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/07/2023] [Revised: 09/29/2023] [Accepted: 10/02/2023] [Indexed: 11/07/2023]
21
Guryanova SV, Balandin SV, Belogurova-Ovchinnikova OY, Ovchinnikova TV. Marine Invertebrate Antimicrobial Peptides and Their Potential as Novel Peptide Antibiotics. Mar Drugs 2023;21:503. [PMID: 37888438 PMCID: PMC10608444 DOI: 10.3390/md21100503] [Citation(s) in RCA: 12] [Impact Index Per Article: 6.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/01/2023] [Revised: 09/14/2023] [Accepted: 09/21/2023] [Indexed: 10/28/2023]  Open
22
Rutz C, Bonassin L, Kress A, Francesconi C, Boštjančić LL, Merlat D, Theissinger K, Lecompte O. Abundance and Diversification of Repetitive Elements in Decapoda Genomes. Genes (Basel) 2023;14:1627. [PMID: 37628678 PMCID: PMC10454600 DOI: 10.3390/genes14081627] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2023] [Revised: 08/05/2023] [Accepted: 08/12/2023] [Indexed: 08/27/2023]  Open
23
Evo-devo perspectives on cancer. Essays Biochem 2022;66:797-815. [PMID: 36250956 DOI: 10.1042/ebc20220041] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/15/2022] [Revised: 09/22/2022] [Accepted: 09/26/2022] [Indexed: 12/13/2022]
24
Carrageta DF, Guerra-Carvalho B, Spadella MA, Yeste M, Oliveira PF, Alves MG. Animal models of male reproductive ageing to study testosterone production and spermatogenesis. Rev Endocr Metab Disord 2022;23:1341-1360. [PMID: 35604584 DOI: 10.1007/s11154-022-09726-9] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Submit a Manuscript] [Subscribe] [Scholar Register] [Accepted: 04/15/2022] [Indexed: 01/11/2023]
25
Zhao J, Timira V, Ahmed I, Chen Y, Wang H, Zhang Z, Lin H, Li Z. Crustacean shellfish allergens: influence of food processing and their detection strategies. Crit Rev Food Sci Nutr 2022;64:3794-3822. [PMID: 36263970 DOI: 10.1080/10408398.2022.2135485] [Citation(s) in RCA: 13] [Impact Index Per Article: 4.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/03/2022]
26
Dorant Y, Laporte M, Rougemont Q, Cayuela H, Rochette R, Bernatchez L. Landscape genomics of the American lobster (Homarus americanus). Mol Ecol 2022;31:5182-5200. [PMID: 35960266 DOI: 10.1111/mec.16653] [Citation(s) in RCA: 10] [Impact Index Per Article: 3.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/05/2021] [Revised: 08/03/2022] [Accepted: 08/08/2022] [Indexed: 01/07/2023]
27
Zhang Y, Nie H, Yin Z, Yan X. Comparative transcriptomic analysis revealed dynamic changes of distinct classes of genes during development of the Manila clam (Ruditapes philippinarum). BMC Genomics 2022;23:676. [PMID: 36175832 PMCID: PMC9524096 DOI: 10.1186/s12864-022-08813-0] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 03/05/2022] [Accepted: 07/28/2022] [Indexed: 11/10/2022]  Open
28
Wang J, Chen X, Hou X, Wang J, Yue W, Huang S, Xu G, Yan J, Lu G, Hofreiter M, Li C, Wang C. "Omics" data unveil early molecular response underlying limb regeneration in the Chinese mitten crab, Eriocheir sinensis. SCIENCE ADVANCES 2022;8:eabl4642. [PMID: 36112682 PMCID: PMC9481118 DOI: 10.1126/sciadv.abl4642] [Citation(s) in RCA: 9] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 07/15/2021] [Accepted: 08/01/2022] [Indexed: 05/22/2023]
29
Söderhäll I, Fasterius E, Ekblom C, Söderhäll K. Characterization of hemocytes and hematopoietic cells of a freshwater crayfish based on single-cell transcriptome analysis. iScience 2022;25:104850. [PMID: 35996577 PMCID: PMC9391574 DOI: 10.1016/j.isci.2022.104850] [Citation(s) in RCA: 11] [Impact Index Per Article: 3.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/11/2022] [Revised: 06/30/2022] [Accepted: 07/22/2022] [Indexed: 11/29/2022]  Open
30
Wyngaard GA, Skern-Mauritzen R, Malde K, Prendergast R, Peruzzi S. The salmon louse genome may be much larger than sequencing suggests. Sci Rep 2022;12:6616. [PMID: 35459797 PMCID: PMC9033869 DOI: 10.1038/s41598-022-10585-2] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/07/2021] [Accepted: 04/08/2022] [Indexed: 12/30/2022]  Open
31
Vogt G. Studying phenotypic variation and DNA methylation across development, ecology and evolution in the clonal marbled crayfish: a paradigm for investigating epigenotype-phenotype relationships in macro-invertebrates. Naturwissenschaften 2022;109:16. [PMID: 35099618 DOI: 10.1007/s00114-021-01782-6] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/26/2021] [Revised: 12/10/2021] [Accepted: 12/15/2021] [Indexed: 12/17/2022]
32
Austin CM, Croft LJ, Grandjean F, Gan HM. The NGS Magic Pudding: A Nanopore-Led Long-Read Genome Assembly for the Commercial Australian Freshwater Crayfish, Cherax destructor. Front Genet 2022;12:695763. [PMID: 35126445 PMCID: PMC8807398 DOI: 10.3389/fgene.2021.695763] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/15/2021] [Accepted: 12/23/2021] [Indexed: 11/26/2022]  Open
33
Vogt G. Cytology, function and dynamics of stem and progenitor cells in decapod crustaceans. Biol Rev Camb Philos Soc 2021;97:817-850. [PMID: 34914163 DOI: 10.1111/brv.12824] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2021] [Revised: 11/26/2021] [Accepted: 11/30/2021] [Indexed: 12/12/2022]
34
Moroz LL, Nikitin MA, Poličar PG, Kohn AB, Romanova DY. Evolution of glutamatergic signaling and synapses. Neuropharmacology 2021;199:108740. [PMID: 34343611 PMCID: PMC9233959 DOI: 10.1016/j.neuropharm.2021.108740] [Citation(s) in RCA: 36] [Impact Index Per Article: 9.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 06/04/2021] [Revised: 07/28/2021] [Accepted: 07/29/2021] [Indexed: 12/13/2022]
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