Strong top-down control in southern California kelp forest ecosystems

Microbiome composition and function within the Kellet's whelk perivitelline fluid

Microbiomes have gained significant attention in ecological research, owing to their diverse interactions and essential roles within different organismal ecosystems. Microorganisms, such as bacteria, archaea, and viruses, have profound impact on host health, influencing digestion, metabolism, immune function, tissue development, and behavior. This study investigates the microbiome diversity and function of Kellet's whelk (Kelletia kelletii) perivitelline fluid (PVF), which sustains thousands of developing K. kelletii embryos within a polysaccharide and protein matrix. Our core microbiome analysis reveals a diverse range of bacteria, with the Roseobacter genus being the most abundant. Additionally, genes related to host-microbe interactions, symbiosis, and quorum sensing were detected, indicating a potential symbiotic relationship between the microbiome and Kellet's whelk embryos. Furthermore, the microbiome exhibits gene expression related to antibiotic biosynthesis, suggesting a defensive role against pathogenic bacteria and potential discovery of novel antibiotics. Overall, this study sheds light on the microbiome's role in Kellet's whelk development, emphasizing the significance of host-microbe interactions in vulnerable life history stages. To our knowledge, ours is the first study to use 16S sequencing coupled with RNA sequencing (RNA-seq) to profile the microbiome of an invertebrate PVF.IMPORTANCEThis study provides novel insight to an encapsulated system with strong evidence of symbiosis between the microbial inhabitants and developing host embryos. The Kellet's whelk perivitelline fluid (PVF) contains microbial organisms of interest that may be providing symbiotic functions and potential antimicrobial properties during this vulnerable life history stage. This study, the first to utilize a comprehensive approach to investigating Kellet's whelk PVF microbiome, couples 16S rRNA gene long-read sequencing with RNA-seq. This research contributes to and expands our knowledge on the roles of beneficial host-associated microbes.

Genomic DNA extraction optimization and validation for genome sequencing using the marine gastropod Kellet's whelk

Next-generation sequencing technologies, such as Nanopore MinION, Illumina Hiseq and Novaseq, and PacBio Sequel II, hold immense potential for advancing genomic research on non-model organisms, including the vast majority of marine species. However, application of these technologies to marine invertebrate species is often impeded by challenges in extracting and purifying their genomic DNA due to high polysaccharide content and other secondary metabolites. In this study, we help resolve this issue by developing and testing DNA extraction protocols for Kellet's whelk (Kelletia kelletii), a subtidal gastropod with ecological and commercial importance, by comparing four DNA extraction methods commonly used in marine invertebrate studies. In our comparison of extraction methods, the Salting Out protocol was the least expensive, produced the highest DNA yields, produced consistent high DNA quality, and had low toxicity. We validated the protocol using an independent set of tissue samples, then applied it to extract high-molecular-weight (HMW) DNA from over three thousand Kellet's whelk tissue samples. The protocol demonstrated scalability and, with added clean-up, suitability for RAD-seq, GT-seq, as well as whole genome sequencing using both long read (ONT MinION) and short read (Illumina NovaSeq) sequencing platforms. Our findings offer a robust and versatile DNA extraction and clean-up protocol for supporting genomic research on non-model marine organisms, to help mediate the under-representation of invertebrates in genomic studies.

Temporal variation in translocated Isle Royale wolf diet

Wolves (Canis lupus) can exert top-down pressure and shape ecological communities through the predation of ungulates and beavers (Castor spp.). Therefore, understanding wolf foraging is critical to estimating their ecosystem-level effects. Specifically, if wolves are consumers that optimize tradeoffs between the cost and benefits of prey acquisition, changes in these factors may lead to prey-switching or negative-density dependent selection with potential consequences for community stability. For wolves, factors affecting cost and benefits include prey vulnerability, risk, reward, and availability, which can vary temporally. We described the wolf diet by the frequency of occurrence and percent biomass and characterized the diet using prey remains found in wolf scats on Isle Royale National Park, Michigan, USA, during May-October 2019 and 2020. We used logistic regression to estimate prey consumption over time. We predicted prey with temporal variation in cost (availability and/or vulnerability) such as adult moose (Alces alces), calf moose, and beaver (Castor canadensis) to vary in wolf diets. We analyzed 206 scats and identified 62% of remains as beaver, 26% as moose, and 12% as other species (birds, smaller mammals, and wolves). Adult moose were more likely to occur in wolf scats in May when moose are in poor condition following winter. The occurrence of moose calves peaked during June-mid-July following birth but before calf vulnerability declined as they matured. By contrast, beaver occurrence in wolf scat did not change over time, reflecting the importance of low-handling cost prey items for recently introduced lone or paired wolves. Our results demonstrate that the wolf diet is responsive to temporal changes in prey costs. Temporal fluctuation in diet may influence wolves' ecological role if prey respond to increased predation risk by altering foraging or breeding behavior.

Effects of acute temperature change on California moray prey manipulation and transport behavior

California moray eels, Gymnothorax mordax, are benthic predatory residents of southern California kelp forest ecosystems. California morays around Catalina Island move vertically through the water column to feed, exposing them to a wide range of temperatures. For a predatory fish, morays have a relatively large prey handling repertoire that enable them to manipulate their prey before swallowing. Prey manipulation behaviors include shaking, spinning, knotting, and ramming prey against other objects. Morays also have observable transport mechanics where they protract and retract their pharyngeal jaws to swallow prey. We examined prey manipulation and transport behaviors at four temperature treatments that simulated the range of environmental temperatures morays encounter in the wild. We hypothesized that higher temperatures will increase the prevalence, duration, and rate of whole body prey manipulation behaviors and decrease the duration of prey transport time. Previous temperature studies focused on fishes occupying intermediate trophic levels. Therefore, understanding how acute temperature affects feeding behavior of the California moray eel, an abundant predatory fish, is especially important, as changes in environmental temperature may have disproportionate effects in their marine community. Five morays were acutely exposed to 15, 18, 21, 24 °C temperatures and their subsequent feeding behaviors were filmed and quantified. Individuals were offered the same relative prey mass (15 %) in relation to their body mass throughout the study. We compared the number of times each prey manipulation behavior occurred, the mean time morays employed each behavior, and the rate (number of times per second) each behavior was performed across different temperatures. Our data demonstrates that absolute time spent knotting varies significantly across temperature. Knotting, often used to remove pieces from larger prey, was most frequent at 21 and 24 °C. The average duration of knotting also increased with temperature. The rates of prey manipulation behaviors did not vary significantly with temperature. Finally, transport behavior did not vary across treatments. Our study shows that knotting behavior in the California moray is responsive to environmental temperatures and that morays may be able to manipulate larger prey in warmer waters. These behavioral data may have important implications for predator-prey relationships under dynamic and future ocean conditions.

Kelp Forests: Catastrophes, Resilience, and Management

Resilient kelp forests provide foundation habitat for marine ecosystems and are indicators of the ecosystems’ sustainable natural capital. Loss of resilience and imperfectly reversible catastrophic shifts from kelp forests to urchin barrens, due to pollution or loss of a top predator, are part of an ecological tipping point phenomenon, and involve a loss in sustainable natural capital. Management controls to prevent or reverse these shifts and losses are classified in a number of ways. Systemic controls eliminate the cause of the problem. Symptomatic controls use leverage points for more direct control of the populations affected, urchin harvesting or culling, or kelp enhancement. There is a distinction between ongoing structural (press) controls versus temporary or intermittent perturbation (pulse) controls, and one between shift preventing versus shift reversing or restorative controls. Adaptive management and the options it creates both focus on reductions in uncertainty and control policies with the flexibility to take advantage of those reductions. The various management distinctions are most easily understood by modeling the predator-urchin-kelp marine ecosystem. This paper develops a mathematical model of the ecosystem that has the potential for two different catastrophic shifts between equilibria. Pulse disturbances, originating from exogenous abiotic factors or population dynamics elsewhere in the metacommunity, can activate shifts. A measure of probabilistic resilience is developed and used as part of an assessment of the ecosystem’s sustainable stock of natural capital. With perturbation outcomes clustered around the originating equilibrium, hysteresis is activated, resulting imperfect reversibility of catastrophic shifts, and a loss in natural capital. The difficulty of reversing a shift from kelp forest to urchin barren, with an associated loss in sustainable natural capital, is an example. Management controls are modeled. I find that systemic and symptomatic, and press and pulse, controls can be complementary. Restorative controls tend to be more difficult or costly than preventative ones. Adaptive management, favoring flexible, often preventative, controls, creates option value, lowering control costs and/or losses in sustainable natural capital. Two cases are used to illustrate, Tasmania, Australia and Haida Gwaii, Canada.

Resurvey of sea urchins and mussels at protected and harvested shores a decade after: A beyond-BACI approach

Comparing temporal patterns of distribution and abundance of target organisms between protected and harvested shores is essential to assess the extant effectiveness of marine protected areas (MPAs) and whether it is maintained through time. By means of an adapted Beyond-BACI approach, we compared the short- and long-term patterns of variation in the abundance of the sea urchin Paracentrotus lividus and the mussel Mytilus galloprovincialis at a protected shore (within the Parque Litoral Norte MPA, Portugal) and at three adjacent shores subject to intense harvesting over a decadal interval. Despite the existence of the MPA for more than 30 years, we did not obtain clear evidence of its persistent or recent effectiveness on intertidal species of commercial interest. We suggest the need for refining management options along the northern Portuguese coast, possibly by better enforcing current regulations and reconsidering the present design of protection schemes. Moreover, the adopted analytical approach may represent a methodological reference for similar investigations in systems where the perturbation of interest (protection or disturbance) would not occur at a given time during the course of the study, but has been operating since before the first sampling occasion and maintained until subsequent surveys.

Marine Protection Induces Morphological Variation in the California Moray, Gymnothorax mordax

The effectiveness of marine protected areas (MPAs) on the general health and conservation of species, habitats, and community interactions is of great interest to researchers, managers, and recreationalists. However, the ecological and behavioral diversity of vertebrate predators of southern California kelp forests limits our ability to make general conclusions about MPA effectiveness across a variety of species. Identifying and studying species with extreme feeding habits or prey-capture strategies may offer greater insight into predator-prey relationships and reveal the trophic importance of an animal in the larger community. Moray eels (family Muraenidae) have been shown to have morphological and behavioral adaptations that allow them to consume large prey whole, identifying them as important predators. From 2015 to 2018, we studied the health and feeding behavior of a long-lived, elusive, and benthic kelp forest predator, the California moray eel (Gymnothorax mordax). We trapped eels inside and outside of Blue Cavern Onshore State Marine Conservation Area, an MPA on the northwest side of Santa Catalina Island, CA which prohibits the take of any species. Over 4 years, we captured 1736 eels. Overall, we found that morays were longer, older, heavier, had higher body condition, and were found in greater abundance within the MPA. Although fish comprised the majority of their summer diet, morays outside of the MPA were consuming a more diverse set of fish, while kelp bass comprised more than half of the diet for morays inhabiting the MPA. Additionally, we found that morays within the MPA had larger relative vertical gape distances (VGDs) and narrower heads. Our recapture data support the high site fidelity of morays, indicating that their diet and morphology are influenced by their local community. While the majority of morays are thriving in the MPA, as suggested by their robust sizes and longevity, high abundance appears to result in higher frequencies of cannibalism, the presence of an undescribed disease, and lower growth rates. Our results suggest that the MPA affects the life history of morays and may select for an alternative feeding strategy in which eels develop larger VGDs, smaller adductor muscles, and a specialized diet which is presumably influenced by the local environment. In addition, observations of cannibalistic behavior and species-specific disease provide us with important insight into natural factors that may still regulate populations removed from anthropogenic disturbances such as fishing.

Seasonal resource pulses and the foraging depth of a Southern Ocean top predator

Seasonal resource pulses can have enormous impacts on species interactions. In marine ecosystems, air-breathing predators often drive their prey to deeper waters. However, it is unclear how ephemeral resource pulses such as near-surface phytoplankton blooms alter the vertical trade-off between predation avoidance and resource availability in consumers, and how these changes cascade to the diving behaviour of top predators. We integrated data on Weddell seal diving behaviour, diet stable isotopes, feeding success and mass gain to examine shifts in vertical foraging throughout ice break-out and the resulting phytoplankton bloom each year. We also tested hypotheses about the likely location of phytoplankton bloom origination (advected or produced in situ where seals foraged) based on sea ice break-out phenology and advection rates from several locations within 150 km of the seal colony. In early summer, seals foraged at deeper depths resulting in lower feeding rates and mass gain. As sea ice extent decreased throughout the summer, seals foraged at shallower depths and benefited from more efficient energy intake. Changes in diving depth were not due to seasonal shifts in seal diets or horizontal space use and instead may reflect a change in the vertical distribution of prey. Correspondence between the timing of seal shallowing and the resource pulse was variable from year to year and could not be readily explained by our existing understanding of the ocean and ice dynamics. Phytoplankton advection occurred faster than ice break-out, and seal dive shallowing occurred substantially earlier than local break-out. While there remains much to be learned about the marine ecosystem, it appears that an increase in prey abundance and accessibility via shallower distributions during the resource pulse could synchronize life-history phenology across trophic levels in this high-latitude ecosystem.

After 15 years, no evidence for trophic cascades in marine protected areas

In marine ecosystems, fishing often targets predators, which can drive direct and indirect effects on entire food webs. Marine reserves can induce trophic cascades by increasing predator density and body size, thereby increasing predation pressure on populations of herbivores, such as sea urchins. In California's northern Channel Islands, two species of sea urchins are abundant: the red urchin Mesocentrotus franciscanus, which is targeted by an economically valuable fishery, and the virtually unfished purple urchin Strongylocentrotus purpuratus. We hypothesized that urchin populations inside marine reserves would be depressed by higher predation, but that red urchins would be less affected due to fishing outside reserves. Instead, our analyses revealed that purple urchin populations were unaffected by reserves, and red urchin biomass significantly increased in response to protection. Therefore, urchin biomass overall has increased inside reserves, and we found no evidence that giant kelp is positively affected by reserves. Our results reveal the overwhelming direct effect of protecting fished species in marine reserves over indirect effects that are often predicted but seldom clearly documented. Indirect effects due to marine reserves may eventually occur in some cases, but very effective predators, large reserves or extended time periods may be needed to induce them.

Coupled beta diversity patterns among coral reef benthic taxa

Unraveling the processes that drive diversity patterns remains a central challenge for ecology, and an increased understanding is especially urgent to address and mitigate escalating diversity loss. Studies have primarily focused on singular taxonomic groups, but recent research has begun evaluating spatial diversity patterns across multiple taxonomic groups and suggests taxa may have congruence in their diversity patterns. Here, we use surveys of the coral reef benthic groups: scleractinian corals, macroalgae, sponges and gorgonians conducted in the Bahamian Archipelago across 27 sites to determine if there is congruence between taxonomic groups in their site-level diversity patterns (i.e. alpha diversity: number of species, and beta diversity: differences in species composition) while accounting for environmental predictors (i.e. depth, wave exposure, market gravity (i.e. human population size and distance to market), primary productivity, and grazing). Overall, we found that the beta diversities of these benthic groups were significant predictors of each other. The most consistent relationships existed with algae and coral, as their beta diversity was a significant predictor of every other taxa's beta diversity, potentially due to their strong biotic interactions and dominance on the reef. Conversely, we found no congruence patterns in the alpha diversity of the taxa. Market gravity and exposure showed the most prevalent correlation with both alpha and beta diversity for the taxa. Overall, our results suggest that coral reef benthic taxa can have spatial congruence in species composition, but not number of species, and that future research on biodiversity trends should consider that taxa may have non-independent patterns.

Proteomic changes across a natural temperature gradient in a marine gastropod

Responses of marine ectotherms to variable environmental temperature often entails maintanence of cellular homeostasis and physiological function through temperature compensation and physiological changes. We investigated the physiological response to thermal stress by examining proteomic changes in the marine kelp forest gastropod and emerging fisheries species Kellet's whelk (Kelletia kelletii) across a naturally-existing thermal gradient that ranges from a warmer-water site inside the species' native range and extends to the northern, cold-water edge of the range. We hypothesized that abundance of cellular stress response and energy metabolism proteins would increase with decreasing temperature in support of cold-compensation. Our exploratory proteomic analysis of whelk gill tissue (N = 6 whelks) from each of the four California Channel Island sites revealed protein abundance changes related to the cytoskeleton, energy metabolism/oxidative stress, and cell signaling. The changes did not correlate consistently with temperature. Nonetheless, whelks from the coldest island site showed increased abundance of energy metabolism and oxidative stress proteins, possibly suggesting oxidative damage of lipid membranes that is ameliorated by antioxidants and may aid in their cold stress response. Similarly, our exploratory analysis revealed abundances of cell signaling proteins that were higher at the coldest site compared to the warmest site, possibly indicating an importance for cell signaling regulation in relatively cooler environments. This study provides protein targets for future studies related to thermal effects in marine animals and may contribute to understanding the physiological response of marine organisms to future ocean conditions.

Coastal fish assemblages and predation pressure in northern-central Chilean Lessonia trabeculata kelp forests and barren grounds

Kelp forests are declining in many parts of the globe, which can lead to the spreading of barren grounds. Increased abundances of grazers, mainly due to reduction of their predators, are among the causes of this development. Here, we compared the species richness (SR), frequency of occurrence (FO), and maximum abundance (MaxN) of predatory fish and their predation pressure between kelp forest and barren ground habitats of northern-central Chile. Sampling was done using baited underwater cameras with vertical and horizontal orientation. Two prey organisms were used as tethered baits, the black sea urchin Tetrapygus niger and the porcelanid crab Petrolisthes laevigatus. SR did not show major differences between habitats, while FO and MaxN were higher on barren grounds in vertical videos, with no major differences between habitats in horizontal videos. Predation pressure did not differ between habitats, but after 24 h consumption of porcelanid crabs was significantly higher than that of sea urchins. Scartichthys viridis/gigas was the main predator, accounting for 82% of the observed predation events on Petrolisthes laevigatus. Most of these attacks occurred on barren grounds. Scartichthys viridis/gigas was the only fish observed attacking (but not consuming) tethered sea urchins. High abundances of opportunistic predators (Scartichthys viridis/gigas) are probably related to low abundances of large predatory fishes. These results suggest that intense fishing activity on large predators, and their resulting low abundances, could result in low predation pressure on sea urchins, thereby contributing to the increase of T. niger abundances in subtidal rocky habitats.

Experiments reveal limited top-down control of key herbivores in southern California kelp forests

Predator responses to gradients in prey density have important implications for population regulation and are a potential structuring force for subtidal marine communities, particularly on rocky reefs where herbivorous sea urchins can drive community state shifts. On rocky reefs in southern California where predatory sea otters have been extirpated, top-down control of sea urchins by alternative predators has been hypothesized but rarely tested experimentally. In laboratory feeding assays, predatory spiny lobsters (Panulirus interruptus) demonstrated a saturating functional response to urchin prey, whereby urchin proportional mortality was inversely density-dependent. In field experiments on rocky reefs near San Diego, California, predators (primarily the labrid fish California sheephead, Semicossyphus pulcher) inflicted highly variable mortality on purple urchin (Strongylocentrotus purpuratus) prey across all density levels. However, at low to moderate densities commonly observed within kelp forests, purple urchin mortality increased to a peak at a density of ~11 urchins/m2 . Above that level, at densities typical of urchin barrens, purple urchin mortality was density-independent. When larger red urchins (Mesocentrotus franciscanus) were offered to predators simultaneously with purple urchins, mortality was density-independent. Underwater videography revealed a positive relationship between purple urchin density and both the number and richness of fish predators, but these correlations were not observed when red urchins were present. Our results demonstrate highly variable mortality rates across prey densities in this system and suggest that top-down control of urchins can occur only under limited circumstances. Our findings provide insight into the dynamics of alternate community states observed on rocky reefs.

No-take marine reserves control the recovery of sea urchin populations after mass mortality events

Understanding how no-take zones (NTZs) shape the population dynamics of key herbivores is crucial for the conservation and management of temperate benthic communities. Here, we examine the recovery patterns of sea urchin populations following a high-intensity storm under contrasting protection regimes in the NW Mediterranean Sea. We found significant differences in the recovery trends of Paracentrotus lividus abundance and biomass in the five years following the storm. The P. lividus populations outside the NTZ recovered faster than the populations inside the NTZ, revealing that predation was the main factor controlling the sea urchin populations inside the NTZ during the study period. Arbacia lixula reached the highest abundance and biomass values ever observed outside the NTZ in 2016. Our findings reveal that predation can control the establishment of new sea urchin populations and emphasize top-down control in NTZs, confirming the important role of fully protected areas in the structure of benthic communities.

Pollutant bioaccumulation in the California spiny lobster (Panulirus interruptus) in San Diego Bay, California, and potential human health implications

While the California spiny lobster (Panulirus interruptus) is an important commercial and recreational fishery species in California, there is a lack of data on bioaccumulation for the species. This study examined pollutant tissue concentrations in lobsters from San Diego Bay, California. Observed lobster pollutant tissue concentrations in tail muscle were compared to State of California pollutant advisory levels. Concentrations were then used to conduct risk assessment using catch data from the California Department of Fish and Wildlife. Study results found little bioaccumulation of organic pollutants in tail tissue, likely due to low observed lipids. Mercury was present, predominantly in methyl form, at concentrations above advisory levels. Recreational catch data for San Diego Bay showed increased non-cancer risk for fishers at the 90th percentile or greater of reported annual catch. Further studies should focus on non-tail tissues, as exploratory whole lobster samples (n = 2) showed elevated organic pollutants and metals.

Inter-annual cascade effect on marine food web: A benthic pathway lagging nutrient supply to pelagic fish stock

Currently, spatial and temporal changes in nutrients availability, marine planktonic, and fish communities are best described on a shorter than inter-annual (seasonal) scale, primarily because the simultaneous year-to-year variations in physical, chemical, and biological parameters are very complex. The limited availability of time series datasets furnishing simultaneous evaluations of temperature, nutrients, plankton, and fish have limited our ability to describe and to predict variability related to short-term process, as species-specific phenology and environmental seasonality. In the present study, we combine a computational time series analysis on a 15-year (1995–2009) weekly-sampled time series (high-resolution long-term time series, 780 weeks) with an Autoregressive Distributed Lag Model to track non-seasonal changes in 10 potentially related parameters: sea surface temperature, nutrient concentrations (NO₂, NO₃, NH₄ and PO₄), phytoplankton biomass (as in situ chlorophyll a biomass), meroplankton (barnacle and mussel larvae), and fish abundance (Mugil liza and Caranx latus). Our data demonstrate for the first time that highly intense and frequent upwelling years initiate a huge energy flux that is not fully transmitted through classical size-structured food web by bottom-up stimulus but through additional ontogenetic steps. A delayed inter-annual sequential effect from phytoplankton up to top predators as carnivorous fishes is expected if most of energy is trapped into benthic filter feeding organisms and their larval forms. These sequential events can explain major changes in ecosystem food web that were not predicted in previous short-term models.

Tool use by a temperate wrasse, California sheephead Semicossyphus pulcher

Multiple individuals of a temperate reef fish species (California sheephead Semicossyphus pulcher) were observed using an anvil to crush hard-bodied invertebrate prey. Potential implications for this behaviour extend from individuals, which may experience reduced likelihood of injury and increased reproduction, to communities, which could see changes in prey abundance and size-distribution, with particularly important consequences for communities regulated by top-down processes. Until relatively recently, the use of simple tools by fishes was overlooked compared with observations of tool use by primates and birds; however, observations of tool use, and interesting foraging behaviours in general, by aquatic organisms should increase with improved underwater monitoring technology.

Dynamic evolutionary change in post-Paleozoic echinoids and the importance of scale when interpreting changes in rates of evolution

How ecological and morphological diversity accrues over geological time has been much debated by paleobiologists. Evidence from the fossil record suggests that many clades reach maximal diversity early in their evolutionary history, followed by a decline in evolutionary rates as ecological space fills or due to internal constraints. Here, we apply recently developed methods for estimating rates of morphological evolution during the post-Paleozoic history of a major invertebrate clade, the Echinoidea. Contrary to expectation, rates of evolution were lowest during the initial phase of diversification following the Permo-Triassic mass extinction and increased over time. Furthermore, although several subclades show high initial rates and net decreases in rates of evolution, consistent with "early bursts" of morphological diversification, at more inclusive taxonomic levels, these bursts appear as episodic peaks. Peak rates coincided with major shifts in ecological morphology, primarily associated with innovations in feeding strategies. Despite having similar numbers of species in today's oceans, regular echinoids have accrued far less morphological diversity than irregular echinoids due to lower intrinsic rates of morphological evolution and less morphological innovation, the latter indicative of constrained or bounded evolution. These results indicate that rates of evolution are extremely heterogenous through time and their interpretation depends on the temporal and taxonomic scale of analysis.

Threats and knowledge gaps for ecosystem services provided by kelp forests: a northeast Atlantic perspective

Kelp forests along temperate and polar coastlines represent some of most diverse and productive habitats on the Earth. Here, we synthesize information from >60 years of research on the structure and functioning of kelp forest habitats in European waters, with particular emphasis on the coasts of UK and Ireland, which represents an important biogeographic transition zone that is subjected to multiple threats and stressors. We collated existing data on kelp distribution and abundance and reanalyzed these data to describe the structure of kelp forests along a spatial gradient spanning more than 10° of latitude. We then examined ecological goods and services provided by kelp forests, including elevated secondary production, nutrient cycling, energy capture and flow, coastal defense, direct applications, and biodiversity repositories, before discussing current and future threats posed to kelp forests and identifying key knowledge gaps. Recent evidence unequivocally demonstrates that the structure of kelp forests in the NE Atlantic is changing in response to climate- and non-climate-related stressors, which will have major implications for the structure and functioning of coastal ecosystems. However, kelp-dominated habitats along much of the NE Atlantic coastline have been chronically understudied over recent decades in comparison with other regions such as Australasia and North America. The paucity of field-based research currently impedes our ability to conserve and manage these important ecosystems. Targeted observational and experimental research conducted over large spatial and temporal scales is urgently needed to address these knowledge gaps.

Recovery of a top predator mediates negative eutrophic effects on seagrass

A fundamental goal of the study of ecology is to determine the drivers of habitat-forming vegetation, with much emphasis given to the relative importance to vegetation of "bottom-up" forces such as the role of nutrients and "top-down" forces such as the influence of herbivores and their predators. For coastal vegetation (e.g., kelp, seagrass, marsh, and mangroves) it has been well demonstrated that alterations to bottom-up forcing can cause major disturbances leading to loss of dominant vegetation. One such process is anthropogenic nutrient loading, which can lead to major changes in the abundance and species composition of primary producers, ultimately affecting important ecosystem services. In contrast, much less is known about the relative importance of apex predators on coastal vegetated ecosystems because most top predator populations have been depleted or lost completely. Here we provide evidence that an unusual four-level trophic cascade applies in one such system, whereby a top predator mitigates the bottom-up influences of nutrient loading. In a study of seagrass beds in an estuarine ecosystem exposed to extreme nutrient loading, we use a combination of a 50-y time series analysis, spatial comparisons, and mesocosm and field experiments to demonstrate that sea otters (Enhydra lutris) promote the growth and expansion of eelgrass (Zostera marina) through a trophic cascade, counteracting the negative effects of agriculturally induced nutrient loading. Our results add to a small but growing body of literature illustrating that significant interactions between bottom-up and top-down forces occur, in this case with consequences for the conservation of valued ecosystem services provided by seagrass.

Isolation and characterization of polymorphic microsatellite and COI loci from the whelk Kelletia kelletii

There is considerable interest in the genetic structure of Kelletia kelletii because of its economic, ecological and scientific importance. To that end, we developed species-specific primers which amplify mitochondrial cytochrome c oxidase subunit I as well as 13 hypervariable nuclear microsatellite loci. Using dye-labelled primers, the microsatellite loci can be co-amplified in two multiplex polymerase chain reactions and scored simultaneously on an automated sequencer.

Trophic cascades induced by lobster fishing are not ubiquitous in southern California kelp forests

Fishing can trigger trophic cascades that alter community structure and dynamics and thus modify ecosystem attributes. We combined ecological data of sea urchin and macroalgal abundance with fishery data of spiny lobster (Panulirus interruptus) landings to evaluate whether: (1) patterns in the abundance and biomass among lobster (predator), sea urchins (grazer), and macroalgae (primary producer) in giant kelp forest communities indicated the presence of top-down control on urchins and macroalgae, and (2) lobster fishing triggers a trophic cascade leading to increased sea urchin densities and decreased macroalgal biomass. Eight years of data from eight rocky subtidal reefs known to support giant kelp forests near Santa Barbara, CA, USA, were analyzed in three-tiered least-squares regression models to evaluate the relationships between: (1) lobster abundance and sea urchin density, and (2) sea urchin density and macroalgal biomass. The models included reef physical structure and water depth. Results revealed a trend towards decreasing urchin density with increasing lobster abundance but little evidence that urchins control the biomass of macroalgae. Urchin density was highly correlated with habitat structure, although not water depth. To evaluate whether fishing triggered a trophic cascade we pooled data across all treatments to examine the extent to which sea urchin density and macroalgal biomass were related to the intensity of lobster fishing (as indicated by the density of traps pulled). We found that, with one exception, sea urchins remained more abundant at heavily fished sites, supporting the idea that fishing for lobsters releases top-down control on urchin grazers. Macroalgal biomass, however, was positively correlated with lobster fishing intensity, which contradicts the trophic cascade model. Collectively, our results suggest that factors other than urchin grazing play a major role in controlling macroalgal biomass in southern California kelp forests, and that lobster fishing does not always catalyze a top-down trophic cascade.

Patterns of variation of intertidal species of commercial interest in the Parque Litoral Norte (north Portugal) MPA: comparison with three reference shores

Marine Protected Areas (MPAs) are world-wide established with the aim of conserving biodiversity and preventing overexploitation of marine organisms. Evaluating the effectiveness of MPAs is needed in order to support and implement their management, but it is complicated by the large natural variability in space and time of distribution and abundance of natural populations. Here, we tested the hypothesis that patterns of total abundance and size-frequency distribution of two intensively harvested intertidal species (the sea urchin Paracentrotus lividus and the mussel Mytilus galloprovincialis) differed between a protected and three reference shores along the rocky coast of north Portugal. Response variables were in terms of mean values and measures of variance at different spatial scales (from centimetres to metres) and over time (along a period of about 12 months). A further comparison involved the estimation of the reproductive potential of sea urchins, quantified as variations of Gonad Index (GI = gonad dry weight/body dry weight × 100) at the scale of shore. Results did not generally support a predictable direct effect of protection, as the total abundance and the abundance of larger individuals of both species and GI did not differ between the MPA and reference shores. However, a considerable temporal and spatial variability at smaller scales was detected for several response variables. Such findings have implications for management of MPAs, highlighting the need for sampling designs properly replicated in space and time, in order to examine their effectiveness, and for considering spatial and temporal heterogeneity of target populations and driving processes as a criterion for their implementation and design.

Roles of transport and mixing processes in kelp forest ecology

Fluid-dynamic transport and mixing processes affect birth, death, immigration and emigration rates in kelp forests, and can modulate broader community interactions. In the most highly studied canopy-forming kelp, Macrocystis pyrifera (the giant kelp), models of hydrodynamic and oceanographic phenomena influencing spore movement provide bounds on reproduction, quantify patterns of local and regional propagule supply, identify scales of population connectivity, and establish context for agents of early life mortality. Other analyses yield insight into flow-mediated species interactions within kelp forests. In each case, advances emerge from the use of ecomechanical approaches that propagate physical-biological connections at the scale of the individual to higher levels of ecological organization. In systems where physical factors strongly influence population, community or ecosystem properties, such mechanics-based methods promote crucial progress but are just beginning to realize their full potential.

Ocean currents help explain population genetic structure

Management and conservation can be greatly informed by considering explicitly how environmental factors influence population genetic structure. Using simulated larval dispersal estimates based on ocean current observations, we demonstrate how explicit consideration of frequency of exchange of larvae among sites via ocean advection can fundamentally change the interpretation of empirical population genetic structuring as compared with conventional spatial genetic analyses. Both frequency of larval exchange and empirical genetic difference were uncorrelated with Euclidean distance between sites. When transformed into relative oceanographic distances and integrated into a genetic isolation-by-distance framework, however, the frequency of larval exchange explained nearly 50 per cent of the variance in empirical genetic differences among sites over scales of tens of kilometres. Explanatory power was strongest when we considered effects of multiple generations of larval dispersal via intermediary locations on the long-term probability of exchange between sites. Our results uncover meaningful spatial patterning to population genetic structuring that corresponds with ocean circulation. This study advances our ability to interpret population structure from complex genetic data characteristic of high gene flow species, validates recent advances in oceanographic approaches for assessing larval dispersal and represents a novel approach to characterize population connectivity at small spatial scales germane to conservation and fisheries management.

Nutrient enrichment and food web composition affect ecosystem metabolism in an experimental seagrass habitat

Background

Food web composition and resource levels can influence ecosystem properties such as productivity and elemental cycles. In particular, herbivores occupy a central place in food webs as the species richness and composition of this trophic level may simultaneously influence the transmission of resource and predator effects to higher and lower trophic levels, respectively. Yet, these interactions are poorly understood.

Methodology/Principal Findings

Using an experimental seagrass mesocosm system, we factorially manipulated water column nutrient concentrations, food chain length, and diversity of crustacean grazers to address two questions: (1) Does food web composition modulate the effects of nutrient enrichment on plant and grazer biomasses and stoichiometry? (2) Do ecosystem fluxes of dissolved oxygen and nutrients more closely reflect above-ground biomass and community structure or sediment processes? Nutrient enrichment and grazer presence generally had strong effects on biomass accumulation, stoichiometry, and ecosystem fluxes, whereas predator effects were weaker or absent. Nutrient enrichment had little effect on producer biomass or net ecosystem production but strongly increased seagrass nutrient content, ecosystem flux rates, and grazer secondary production, suggesting that enhanced production was efficiently transferred from producers to herbivores. Gross ecosystem production (oxygen evolution) correlated positively with above-ground plant biomass, whereas inorganic nutrient fluxes were unrelated to plant or grazer biomasses, suggesting dominance by sediment microbial processes. Finally, grazer richness significantly stabilized ecosystem processes, as predators decreased ecosystem production and respiration only in the zero- and one- species grazer treatments.

Conclusions/Significance

Overall, our results indicate that consumer presence and species composition strongly influence ecosystem responses to nutrient enrichment, and that increasing herbivore diversity can stabilize ecosystem flux rates in the face of perturbations.

Integrated ecosystem assessments: developing the scientific basis for ecosystem-based management of the ocean

Integrated ecosystem assessments challenge the broader scientific community to move beyond the important task of tallying insults to marine ecosystems to developing quantitative tools that can support the decisions national and regional resource managers must make.

Multi-level trophic cascades in a heavily exploited open marine ecosystem

Anthropogenic disturbances intertwined with climatic changes can have a large impact on the upper trophic levels of marine ecosystems, which may cascade down the food web. So far it has been difficult to demonstrate multi-level trophic cascades in pelagic marine environments. Using field data collected during a 33-year period, we show for the first time a four-level community-wide trophic cascade in the open Baltic Sea. The dramatic reduction of the cod (Gadus morhua) population directly affected its main prey, the zooplanktivorous sprat (Sprattus sprattus), and indirectly the summer biomass of zooplankton and phytoplankton (top-down processes). Bottom-up processes and climate-hydrological forces had a weaker influence on sprat and zooplankton, whereas phytoplankton variation was explained solely by top-down mechanisms. Our results suggest that in order to dampen the occasionally harmful algal blooms of the Baltic, effort should be addressed not only to control anthropogenic nutrient inputs but also to preserve structure and functioning of higher trophic levels.

Oscillating trophic control induces community reorganization in a marine ecosystem

Understanding how climate regulates trophic control may help to elucidate the causes of transitions between alternate ecosystem states following climate regime shifts. We used a 34-year time series of the abundance of Pacific cod (Gadus macrocephalus) and five prey species to show that the nature of trophic control in a North Pacific ecosystem depends on climate state. Rapid warming in the 1970s caused an oscillation between bottom-up and top-down control. This shift to top-down control apparently contributed to the transition from an initial, prey-rich ecosystem state to the final, prey-poor state. However, top-down control could not be detected in the final state without reference to the initial state and transition period. Complete understanding of trophic control in ecosystems capable of transitions between alternate states may therefore require observations spanning more than one state.

Invasive range expansion by the Humboldt squid, Dosidicus gigas, in the eastern North Pacific

A unique 16-year time series of deep video surveys in Monterey Bay reveals that the Humboldt squid, Dosidicus gigas, has substantially expanded its perennial geographic range in the eastern North Pacific by invading the waters off central California. This sustained range expansion coincides with changes in climate-linked oceanographic conditions and a reduction in competing top predators. It is also coincident with a decline in the abundance of Pacific hake, the most important commercial groundfish species off western North America. Recognizing the interactive effects of multiple changes in the environment is an issue of growing concern in ocean conservation and sustainability research.