1
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Rajapakse S, Lee Y, Jayawardana SB, Helms J, Mondal P, Singh A, Pierce BS, Shafaat HS, Wijeratne GB. Modulation of heme peroxo nucleophilicities with axial ligands reveal key insights into the mechanistic landscape of nitric oxide synthase. Chem Sci 2025:d4sc08701a. [PMID: 40353189 PMCID: PMC12062894 DOI: 10.1039/d4sc08701a] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/25/2024] [Accepted: 04/21/2025] [Indexed: 05/14/2025] Open
Abstract
Mid-valent heme-oxygen intermediates are central to a medley of pivotal physiological transformations in humans, and such systems are increasingly becoming more relevant therapeutic targets for challenging disease conditions. Nonetheless, precise mechanistic details pertaining to mid-valent heme intermediates as well as key structure-activity relationships remain enigmatic. To this end, this study strives to describe the influence of heme proximal ligation on the nucleophilic reactivity patterns of heme peroxo intermediates. A functional model system in which organic oxime substrates are used as N-hydroxy-l-arginine mimics reproduces the second mechanistic step of nitric oxide synthase. Our findings reveal that axial ligation of heme peroxo adducts escalates the rates of nucleophilic reactivity, wherein the anionic ligands exhibited the most pronounced "push effect". Coordination of these axial ligands are accompanied by distinct geometric and electronic perturbations, which are supported by complementary theoretical studies. Kinetic interrogations reveal that the axially ligated heme peroxo adducts presumably mediate oxime oxidation via the same mechanism as the parent (i.e., with only solvent ligation) heme peroxo adduct, where the initial nucleophilic attack from the peroxo moiety on the oxime substrate is rate-limiting. All reaction products, including the final ketone as well as NO-, have been characterized in detail.
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Affiliation(s)
- Shanuk Rajapakse
- Department of Chemistry and Biochemistry, University of Alabama Tuscaloosa AL 35401 USA
| | - Yuri Lee
- Department of Chemistry and Biochemistry, University of California Los Angeles CA 90095 USA
| | - Samith B Jayawardana
- Department of Chemistry and Biochemistry, University of Alabama Tuscaloosa AL 35401 USA
| | - Joshua Helms
- Department of Chemistry and Biochemistry, University of Alabama Tuscaloosa AL 35401 USA
| | - Pritam Mondal
- Department of Chemistry and Biochemistry, University of Alabama Tuscaloosa AL 35401 USA
- Department of Chemical Sciences, Indian Institute of Science Education and Research Mohali Punjab 140306 India
| | - Akhil Singh
- Department of Chemistry and Biochemistry, University of Alabama Tuscaloosa AL 35401 USA
| | - Brad S Pierce
- Department of Chemistry and Biochemistry, University of Alabama Tuscaloosa AL 35401 USA
| | - Hannah S Shafaat
- Department of Chemistry and Biochemistry, University of California Los Angeles CA 90095 USA
| | - Gayan B Wijeratne
- Department of Chemistry and Biochemistry, University of Alabama Tuscaloosa AL 35401 USA
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2
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Gering HE, Manley OM, Holwerda AJ, Grant JL, Ratigan SC, Makris TM. Regulation of ferryl reactivity by the cytochrome P450 decarboxylase OleT. J Inorg Biochem 2025; 270:112912. [PMID: 40222261 DOI: 10.1016/j.jinorgbio.2025.112912] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/10/2025] [Revised: 03/22/2025] [Accepted: 04/03/2025] [Indexed: 04/15/2025]
Abstract
The cytochrome P450 OleT catalyzes the decarboxylation of long-chain fatty acid substrates to produce terminal alkenes using hydrogen peroxide as a co-substrate. The facile activation of peroxide to form Compound I in the first step of the reaction, and subsequent CC bond cleavage mediated by Compound II, provides a unique opportunity to visualize both ferryl intermediates using transient kinetic approaches. Analysis of the Arrhenius behavior yields activation barriers of ∼6 kcal/mol and ∼ 18 kcal/mol for the decay of Compound I and Compound II respectively. The influence of the secondary coordination sphere, probed through site-directed mutagenesis approaches, suggests that restriction of the donor-acceptor distance contributes to the reactivity of Compound I. The reactivity of Compound II was further probed using kinetic solvent isotope effect approaches, confirming that the large barrier owes to a proton-gated mechanism in the decarboxylation reaction coordinate. Hydrogen-bonding to an active-site histidine (H85) in the distal pocket plays a key role in this process.
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Affiliation(s)
- Hannah E Gering
- Department of Structural and Molecular Biochemistry, North Carolina State University, Raleigh, NC 27695, United States
| | - Olivia M Manley
- Department of Structural and Molecular Biochemistry, North Carolina State University, Raleigh, NC 27695, United States
| | - Alexis J Holwerda
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC 29208, United States
| | - Job L Grant
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC 29208, United States
| | - Steven C Ratigan
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC 29208, United States
| | - Thomas M Makris
- Department of Structural and Molecular Biochemistry, North Carolina State University, Raleigh, NC 27695, United States; Department of Chemistry, North Carolina State University, Raleigh, NC 27695, United States.
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3
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Sharma S, Behera H, Ahlawat S, Paul A. Homodimerization of 3-substituted-2-oxindoles for the construction of vicinal all-carbon quaternary centers: chemical, photochemical and electrochemical approaches. Org Biomol Chem 2025; 23:3288-3306. [PMID: 40078113 DOI: 10.1039/d5ob00027k] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/14/2025]
Abstract
Advancements in organic synthesis are revolutionizing the synthesis of complex natural products, which are essential in biomedical research and drug discovery due to their intricate structures. Natural products such as chimonanthine, folicanthine, calycanthine, psychotriadine, etc., with vicinal all-carbon quaternary stereocenters, are particularly significant for their strong binding properties and biological activities. One common feature of these natural products is the presence of dimeric 3-substituted-2-oxindoles having vicinal all-carbon quaternary stereocenters. This review focuses on the chemical, photochemical, and electrochemical approaches for the homodimerization of 3-substituted-2-oxindoles employed by different researchers, with a strong focus on the mechanistic details of proton-coupled electron transfer (PCET). The article also demonstrates that PCET facilitates the reduction of kinetic barriers through the formation of low-energy intermediates and the expansion of synthetic possibilities. Furthermore, natural product syntheses (folicanthine and chimonanthine) from dimeric 3-substituted-2-oxindoles are discussed. Chemical syntheses are time-consuming and, even more importantly, generate significant waste due to the use of metal-based oxidants and catalysts. In this regard, electrochemical synthesis methods offer promising solutions by avoiding the use of chemical oxidants and metal catalysts, thus minimizing environmental impact. The article also outlines the advantages and disadvantages of different synthesis methods and proposes a new direction for future research in this field.
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Affiliation(s)
- Sulekha Sharma
- Department of Chemistry, Indian Institute of Science Education and Research (IISER) Bhopal, MP- 462 066, India.
| | - Harapriya Behera
- Department of Chemistry, Indian Institute of Science Education and Research (IISER) Bhopal, MP- 462 066, India.
| | - Shivani Ahlawat
- Department of Chemistry, Indian Institute of Science Education and Research (IISER) Bhopal, MP- 462 066, India.
| | - Amit Paul
- Department of Chemistry, Indian Institute of Science Education and Research (IISER) Bhopal, MP- 462 066, India.
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4
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Grover A, Conger MA, Liptak MD. Stabilization of the Ferryl═Oxoheme Form of Staphylococcus aureus IsdG by Electron Transfer from a Second-Sphere Tryptophan. J Am Chem Soc 2025; 147:10598-10611. [PMID: 40091640 PMCID: PMC11980046 DOI: 10.1021/jacs.5c00453] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/19/2025]
Abstract
The ferryl heme forms of Staphylococcus aureus IsdG and IsdI have novel UV/vis absorption spectra that are distinct from those of the three forms of ferryl heme typically found in biological systems: compound I, compound II, and compound ES. In this work, the ferryl heme form of IsdG was characterized because it is an analogue for the immediate product of enzyme-catalyzed heme hydroxylation. The ferryl heme form of IsdG generated following the addition of meta-chloroperoxybenzoic acid to the ferric heme form of IsdG has a half-life of 4.0 ± 0.2 min, which is more than 100 times longer than the half-life for the ferryl heme form of human heme oxygenase (hHO). Magnetic circular dichroism characterization of the IsdG species yielded spectral data and zero-field splitting parameters consistent with either a compound II- or compound ES-like ferryl heme. Further characterization of isotopically enriched samples with electron paramagnetic resonance spectroscopy revealed the presence of a protein-based organic radical, as would be expected for compound ES. Finally, multiscale quantum mechanics/molecular mechanics and time-dependent density functional theory strongly suggest that the ferryl heme form of IsdG has a ruffled porphyrin ligand and an oxo ligand. Thus, the ferryl heme form of IsdG is assigned to a compound ES-like species with a Trp67-based radical. Electron transfer from Trp67 to porphyrin will stabilize the immediate product of heme hydroxylation and provide a thermodynamic driving force for the reaction. Furthermore, the ability to transfer an electron between Trp67 and the substrate may explain the differential reactivity of meso-hydroxyheme in IsdG and hHO.
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Affiliation(s)
| | | | - Matthew D. Liptak
- Department of Chemistry, University of Vermont, Burlington, Vermont 05405, United States
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5
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Onderko EL, Field MJ, Silakov A, Yosca TH, Green MT. Importance of the Ferryl Quintet State in Determining the Electronic Properties of P450 Compound I. J Am Chem Soc 2025; 147:9147-9158. [PMID: 40036067 DOI: 10.1021/jacs.4c11688] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/06/2025]
Abstract
We previously reported a selenolate-ligated P450 compound I intermediate (SeP450-I) to be more reactive toward C-H bonds than its thiolate-ligated counterpart. To gain insight into how the selenolate axial ligand influences the reactivity of compound I, we have investigated the electronic structure of the SeP450-I intermediate using variable temperature Mössbauer (VTM) spectroscopy. The VTM data indicate that electronic spin relaxation rates are significantly slower in SeP450-I than in P450-I. Analyses of these data provide Δ, the energy spacing between the two lowest electronic energy levels in compound I. This spacing is typically determined by the zero-field splitting of the ferryl moiety, D, and the exchange coupling, J, between the iron(IV)oxo unit and the ligand-based radical. However, the systems examined are antiferromagnetically coupled with |J/D| > 1. As a result, Δ ∼ (3/2) J, and measurements of Δ provide J (to within ∼5%). These measurements reveal that the sign and magnitude of J track with the reactivity of compound I toward C-H bonds. Efforts to analyze these and other data highlight the inadequacy of the standard ligand field model that is often used to explain the electronic properties of compound I. Additional analyses combining our data with state energies from a previous theoretical investigation support predictions of a low-lying quintet state within the iron(IV)oxo unit. We discuss these findings in light of computational studies that suggest that access to excited states, particularly those of a high-spin nature, can promote metal-oxo mediated C-H bond cleavage.
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Affiliation(s)
- Elizabeth L Onderko
- Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - Mackenzie J Field
- Department of Chemistry, University of California Irvine, Irvine, California 92697, United States
| | - Alexey Silakov
- Department of Chemistry, Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - Timothy H Yosca
- Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, California 92697, United States
| | - Michael T Green
- Department of Chemistry, University of California Irvine, Irvine, California 92697, United States
- Department of Molecular Biology and Biochemistry, University of California Irvine, Irvine, California 92697, United States
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6
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Braun A, Gee LB, Waters MDJ, Jose A, Baker ML, Mara MW, Babicz JT, Ehudin MA, Quist DA, Zhou A, Kroll T, Titus CJ, Lee SJ, Nordlund D, Sokaras D, Yoda Y, Kobayashi Y, Tamasaku K, Hedman B, Hodgson KO, Karlin KD, Que L, Solomon EI. Experimental electronic structures of the Fe IV=O bond in S=1 heme vs. nonheme sites: Effect of the porphyrin ligand. Proc Natl Acad Sci U S A 2025; 122:e2420205122. [PMID: 39982745 PMCID: PMC11873928 DOI: 10.1073/pnas.2420205122] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/01/2024] [Accepted: 01/15/2025] [Indexed: 02/22/2025] Open
Abstract
High-valent FeIV=O species are common intermediates in biological and artificial catalysts. Heme and nonheme S=1 FeIV=O sites have been synthesized and studied for decades but little quantitative experimental comparison of their electronic structures has been available, due to the lack of direct methods focused on the iron. This study allows a rigorous determination of the electronic structure of a nonheme FeIV=O center and its comparison to an FeIV=O heme site using 1s2p resonant inelastic X-ray scattering (RIXS) and Fe L-edge X-ray absorption spectroscopy (XAS). Further, variable temperature magnetic circular dichroism (VT-MCD) of the ligand field transitions, combined with nuclear resonance vibrational spectroscopy of the two S=1 FeIV=O systems show that the equatorial ligand field decreases from a nonheme to a heme FeIV=O site. Alternatively, RIXS and Fe L-edge XAS combined with MCD show that the Fe dπ orbitals are unperturbed in the FeIV=O heme relative to the nonheme site because the strong axial Fe-O bond uncouples the Fe dπ orbitals from the porphyrin π-system. As a consequence, the thermodynamics and kinetics of the H-atom abstraction reactions are actually very similar for heme compound II and nonheme FeIV=O active sites.
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Affiliation(s)
- Augustin Braun
- Department of Chemistry, Stanford University, Stanford, CA94305
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA94025
| | - Leland B. Gee
- Department of Chemistry, Stanford University, Stanford, CA94305
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA94025
| | | | - Anex Jose
- Department of Chemistry, Stanford University, Stanford, CA94305
| | - Michael L. Baker
- Department of Chemistry, Stanford University, Stanford, CA94305
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA94025
| | - Michael W. Mara
- Department of Chemistry, Stanford University, Stanford, CA94305
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA94025
| | | | - Melanie A. Ehudin
- Department of Chemistry, Johns Hopkins University, Baltimore, MD21218
| | - David A. Quist
- Department of Chemistry, Johns Hopkins University, Baltimore, MD21218
| | - Ang Zhou
- Department of Chemistry, University of Minnesota, Minneapolis, MN55455
| | - Thomas Kroll
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA94025
| | - Charles J. Titus
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA94025
- Department of Physics, Stanford University, Stanford
| | - Sang-Jun Lee
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA94025
| | - Dennis Nordlund
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA94025
| | - Dimosthenis Sokaras
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA94025
| | - Yoshitaka Yoda
- Japan Synchrotron Radiation Research Institute, Sayo, Hyogo679-5198, Japan
| | - Yasuhiro Kobayashi
- Institute for Integrated Radiation and Nuclear Science, Kyoto University, Osaka590-0494, Japan
| | - Kenji Tamasaku
- RIKEN SPring-8 Center, RIKEN, Sayo, Hyogo679-5148, Japan
| | - Britt Hedman
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA94025
| | - Keith O. Hodgson
- Department of Chemistry, Stanford University, Stanford, CA94305
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA94025
| | - Kenneth D. Karlin
- Department of Chemistry, Johns Hopkins University, Baltimore, MD21218
| | - Lawrence Que
- Department of Chemistry, University of Minnesota, Minneapolis, MN55455
| | - Edward I. Solomon
- Department of Chemistry, Stanford University, Stanford, CA94305
- Stanford Synchrotron Radiation Lightsource, SLAC National Accelerator Laboratory, Stanford University, Menlo Park, CA94025
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7
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Matsuo T, Sano M, Sumida Y, Ohmiya H. Organic photoredox-catalyzed unimolecular PCET of benzylic alcohols. Chem Sci 2025; 16:3150-3156. [PMID: 39829983 PMCID: PMC11740339 DOI: 10.1039/d4sc07048h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 10/16/2024] [Accepted: 12/09/2024] [Indexed: 01/22/2025] Open
Abstract
Proton-coupled electron transfer (PCET) is a crucial chemical process involving the simultaneous or sequential transfer of protons and electrons, playing a vital role in biological processes and energy conversion technologies. This study investigates the use of an organic photoredox catalyst to facilitate a unimolecular PCET process for the generation of alkyl radicals from benzylic alcohols, with a particular focus on alcohols containing electron-rich arene units. By employing a benzophenone derivative as the catalyst, the reaction proceeds efficiently under photoirradiation, achieving significant yields without the need for a Brønsted base. The findings highlight the potential of this unimolecular PCET mechanism to streamline radical generation in organic synthesis, offering a more efficient and flexible alternative to conventional methods.
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Affiliation(s)
- Tomotoki Matsuo
- Institute for Chemical Research, Kyoto University Gokasho Uji Kyoto 611-0011 Japan
| | - Masaki Sano
- Division of Pharmaceutical Sciences, Graduate School of Medical Sciences, Kanazawa University Kakuma-machi Kanazawa 920-1192 Japan
| | - Yuto Sumida
- Chemical Bioscience Team, Laboratory for Biomaterials and Bioengineering, Institute of Integrated Research, Institute of Science Tokyo Tokyo 101-0062 Japan
| | - Hirohisa Ohmiya
- Institute for Chemical Research, Kyoto University Gokasho Uji Kyoto 611-0011 Japan
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8
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Wu ZJ, Li Z, Ren Y, Meng LG. Overcoming Selectivity Trade-Offs in Alkene Azidodifluoroalkylation: An Enlightening Synergistic Catalytic Approach. Org Lett 2025; 27:115-120. [PMID: 39715577 DOI: 10.1021/acs.orglett.4c04015] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/25/2024]
Abstract
Recent advances in dual catalysis involving biomimetic conversion strategies that utilize radical ligand transfer (RLT) often rely on large doses of precious metal additives. The role of these additives within the mechanism remains ambiguous, leading to complex reaction conditions, uncertain pathways, and increased costs. These challenges complicate the study of the reaction process and are accompanied by potential safety risks. To address these issues, azide salt was used as an alternative to TMSN3. This replacement not only avoids the drawbacks associated with almost parallel research on alkene azidodifluoroalkylation but also eliminates the need for ligands. Comparative analysis indicates that existing biomimetic synergistic catalysis strategies require Ag2CO3 additives to enhance selectivity in alkene difunctionalization reactions, highlighting the superior simplicity, environmental friendliness, and operational ease of our developed synergistic catalysis strategy. Furthermore, under the guidance of our proposed mechanism, an alkene azidosulfonation was designed, validating the innovative and practical applicability of our synergistic catalysis approach.
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Affiliation(s)
- Zhao-Juan Wu
- Key Laboratory of Green and Precise Synthetic Chemistry and Applications, Ministry of Education, Anhui Provincial Key Laboratory of Synthetic Chemistry and Applications, Department of Chemistry, Huaibei Normal University, Huaibei, Anhui 235000, People's Republic of China
| | - Ziyang Li
- Key Laboratory of Green and Precise Synthetic Chemistry and Applications, Ministry of Education, Anhui Provincial Key Laboratory of Synthetic Chemistry and Applications, Department of Chemistry, Huaibei Normal University, Huaibei, Anhui 235000, People's Republic of China
| | - Yue Ren
- Key Laboratory of Green and Precise Synthetic Chemistry and Applications, Ministry of Education, Anhui Provincial Key Laboratory of Synthetic Chemistry and Applications, Department of Chemistry, Huaibei Normal University, Huaibei, Anhui 235000, People's Republic of China
| | - Ling-Guo Meng
- Key Laboratory of Green and Precise Synthetic Chemistry and Applications, Ministry of Education, Anhui Provincial Key Laboratory of Synthetic Chemistry and Applications, Department of Chemistry, Huaibei Normal University, Huaibei, Anhui 235000, People's Republic of China
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9
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Nguy AKL, Ireland KA, Kayrouz CM, Cáceres JC, Greene BL, Davis KM, Seyedsayamdost MR. Non-Canonical Cytochrome P450 Enzymes in Nature. BIORXIV : THE PREPRINT SERVER FOR BIOLOGY 2024:2024.12.22.630014. [PMID: 39763895 PMCID: PMC11703216 DOI: 10.1101/2024.12.22.630014] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Subscribe] [Scholar Register] [Indexed: 01/14/2025]
Abstract
Cytochrome P450s (CYPs) are a superfamily of thiolate-ligated heme metalloenzymes principally responsible for the hydroxylation of unactivated C-H bonds. The lower-axial cysteine is an obligatory and universally conserved residue for the CYP enzyme class. Herein, we challenge this paradigm by systematically identifying non-canonical CYPs (ncCYPs) that do not harbor a cysteine ligand. Our bioinformatic search reveals 20 distinct ncCYP families with diverse ligands encoded in microbial genomes. We characterize a native serine-ligated CYP with a high-spin ferric resting state. Its crystal structure clearly shows a typical CYP fold and a serine alkoxide as a lower axial heme ligand. In addition, we report the discovery and characterization of the first native selenocysteine-ligated CYP in nature. Our findings radically expand the CYP metalloenzyme family.
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Affiliation(s)
- Andy K. L. Nguy
- Department of Chemistry, Princeton University, Princeton, NJ, USA
- These authors contributed equally
| | - Kendra A. Ireland
- Department of Chemistry, Emory University, Atlanta, GA, USA
- These authors contributed equally
| | - Chase M. Kayrouz
- Department of Chemistry, Princeton University, Princeton, NJ, USA
- These authors contributed equally
| | - Juan Carlos Cáceres
- Interdepartmental Program in Quantitative Biosciences, University of California Santa Barbara, Santa Barbara, CA, USA
| | - Brandon L. Greene
- Interdepartmental Program in Quantitative Biosciences, University of California Santa Barbara, Santa Barbara, CA, USA
- Department of Chemistry and Biochemistry, University of California Santa Barbara, Santa Barbara, CA, USA
| | | | - Mohammad R. Seyedsayamdost
- Department of Chemistry, Princeton University, Princeton, NJ, USA
- Department of Molecular Biology, Princeton University, Princeton, NJ, USA
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10
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Marques HM. Electron transfer in biological systems. J Biol Inorg Chem 2024; 29:641-683. [PMID: 39424709 PMCID: PMC11638306 DOI: 10.1007/s00775-024-02076-8] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/21/2024] [Accepted: 09/27/2024] [Indexed: 10/21/2024]
Abstract
Examples of how metalloproteins feature in electron transfer processes in biological systems are reviewed. Attention is focused on the electron transport chains of cellular respiration and photosynthesis, and on metalloproteins that directly couple electron transfer to a chemical reaction. Brief mention is also made of extracellular electron transport. While covering highlights of the recent and the current literature, this review is aimed primarily at introducing the senior undergraduate and the novice postgraduate student to this important aspect of bioinorganic chemistry.
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Affiliation(s)
- Helder M Marques
- Molecular Sciences Institute, School of Chemistry, University of the Witwatersrand, Johannesburg, 2050, South Africa.
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11
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Xiong J, Reed C, Lavina B, Hu MY, Zhao J, Alp EE, Agapie T, Guo Y. 57Fe nuclear resonance vibrational spectroscopic studies of tetranuclear iron clusters bearing terminal iron(iii)-oxido/hydroxido moieties. Chem Sci 2024; 15:d4sc03396e. [PMID: 39296996 PMCID: PMC11403573 DOI: 10.1039/d4sc03396e] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 05/23/2024] [Accepted: 09/08/2024] [Indexed: 09/21/2024] Open
Abstract
57Fe nuclear resonance vibrational spectroscopy (NRVS) has been applied to study a series of tetranuclear iron ([Fe4]) clusters based on a multidentate ligand platform (L3-) anchored by a 1,3,5-triarylbenzene linker and pyrazolate or (tertbutylamino)pyrazolate ligand (PzNH t Bu-). These clusters bear a terminal Fe(iii)-O/OH moiety at the apical position and three additional iron centers forming the basal positions. The three basal irons are connected with the apical iron center via a μ4-oxido ligand. Detailed vibrational analysis via density functional theory calculations revealed that strong NRVS spectral features below 400 cm-1 can be used as an oxidation state marker for the overall [Fe4] cluster core. The terminal Fe(iii)-O/OH stretching frequencies, which were observed in the range of 500-700 cm-1, can be strongly modulated (energy shifts of 20-40 cm-1 were observed) upon redox events at the three remote basal iron centers of the [Fe4] cluster without the change of the terminal Fe(iii) oxidation state and its coordination environment. Therefore, the current study provides a quantitative vibrational analysis of how the remote iron centers within the same iron cluster exert exquisite control of the chemical reactivities and thermodynamic properties of the specific iron site that is responsible for small molecule activation.
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Affiliation(s)
- Jin Xiong
- Department of Chemistry, Carnegie Mellon University Pittsburgh PA 15213 USA
| | - Christopher Reed
- Division of Chemistry and Chemical Engineering, California Institute of Technology CA 91125 USA
| | - Barbara Lavina
- Advanced Photon Source, Argonne National Laboratory Argonne Illinois 60439 USA
- Center for Advanced Radiation Source, University of Chicago Chicago Illinois 60439 USA
| | - Michael Y Hu
- Advanced Photon Source, Argonne National Laboratory Argonne Illinois 60439 USA
| | - Jiyong Zhao
- Advanced Photon Source, Argonne National Laboratory Argonne Illinois 60439 USA
| | - Esen E Alp
- Advanced Photon Source, Argonne National Laboratory Argonne Illinois 60439 USA
| | - Theodor Agapie
- Division of Chemistry and Chemical Engineering, California Institute of Technology CA 91125 USA
| | - Yisong Guo
- Department of Chemistry, Carnegie Mellon University Pittsburgh PA 15213 USA
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12
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Lundahl MN, Greiner MB, Piquette MC, Gannon PM, Kaminsky W, Kovacs JA. Exploring the influence of H-bonding and ligand constraints on thiolate ligated non-heme iron mediated dioxygen activation. Chem Sci 2024; 15:12710-12720. [PMID: 39148773 PMCID: PMC11325341 DOI: 10.1039/d4sc02787f] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/26/2024] [Accepted: 07/05/2024] [Indexed: 08/17/2024] Open
Abstract
Converting triplet dioxygen into a powerful oxidant is fundamentally important to life. The study reported herein quantitatively examines the formation of a well-characterized, reactive, O2-derived thiolate ligated FeIII-superoxo using low-temperature stopped-flow kinetics. Comparison of the kinetic barriers to the formation of this species via two routes, involving either the addition of (a) O2 to [FeII(S2 Me2N3(Pr,Pr))] (1) or (b) superoxide to [FeIII(S2 Me2N3(Pr,Pr))]+ (3) is shown to provide insight into the mechanism of O2 activation. Route (b) was shown to be significantly slower, and the kinetic barrier 14.9 kJ mol-1 higher than route (a), implying that dioxygen activation involves inner-sphere, as opposed to outer sphere, electron transfer from Fe(ii). H-bond donors and ligand constraints are shown to dramatically influence O2 binding kinetics and reversibility. Dioxygen binds irreversibly to [FeII(S2 Me2N3(Pr,Pr))] (1) in tetrahydrofuran, but reversibly in methanol. Hydrogen bonding decreases the ability of the thiolate sulfur to stabilize the transition state and the FeIII-superoxo, as shown by the 10 kJ mol-1 increase in the kinetic barrier to O2 binding in methanol vs. tetrahydrofuran. Dioxygen release from [FeIII(S2 Me2N3(Pr,Pr))O2] (2) is shown to be 24 kJ mol-1 higher relative to previously reported [FeIII(SMe2N4(tren))(O2)]+ (5), the latter of which contains a more flexible ligand. These kinetic results afford an experimentally determined reaction coordinate that illustrates the influence of H-bonding and ligand constraints on the kinetic barrier to dioxygen activation an essential step in biosynthetic pathways critical to life.
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Affiliation(s)
- Maike N Lundahl
- Department of Chemistry, University of Washington Campus Box 351700 Seattle WA 98195 USA
| | - Maria B Greiner
- Department of Chemistry, University of Washington Campus Box 351700 Seattle WA 98195 USA
| | - Marc C Piquette
- Department of Chemistry, Tufts University 62 Talbot Avenue Medford Massachusetts 02155 USA
| | - Paige M Gannon
- Department of Chemistry, University of Washington Campus Box 351700 Seattle WA 98195 USA
| | - Werner Kaminsky
- Department of Chemistry, University of Washington Campus Box 351700 Seattle WA 98195 USA
| | - Julie A Kovacs
- Department of Chemistry, University of Washington Campus Box 351700 Seattle WA 98195 USA
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13
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Hardy FJ, Quesne MG, Gérard EF, Zhao J, Ortmayer M, Taylor CJ, Ali HS, Slater JW, Levy CW, Heyes DJ, Bollinger JM, de Visser SP, Green AP. Probing Ferryl Reactivity in a Nonheme Iron Oxygenase Using an Expanded Genetic Code. ACS Catal 2024; 14:11584-11590. [PMID: 39114090 PMCID: PMC11301626 DOI: 10.1021/acscatal.4c02365] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/22/2024] [Revised: 07/03/2024] [Accepted: 07/08/2024] [Indexed: 08/10/2024]
Abstract
The ability to introduce noncanonical amino acids as axial ligands in heme enzymes has provided a powerful experimental tool for studying the structure and reactivity of their FeIV=O ("ferryl") intermediates. Here, we show that a similar approach can be used to perturb the conserved Fe coordination environment of 2-oxoglutarate (2OG) dependent oxygenases, a versatile class of enzymes that employ highly-reactive ferryl intermediates to mediate challenging C-H functionalizations. Replacement of one of the cis-disposed histidine ligands in the oxygenase VioC with a less electron donating N δ-methyl-histidine (MeHis) preserves both catalytic function and reaction selectivity. Significantly, the key ferryl intermediate responsible for C-H activation can be accumulated in both the wildtype and the modified protein. In contrast to heme enzymes, where metal-oxo reactivity is extremely sensitive to the nature of the proximal ligand, the rates of C-H activation and the observed large kinetic isotope effects are only minimally affected by axial ligand replacement in VioC. This study showcases a powerful tool for modulating the coordination sphere of nonheme iron enzymes that will enhance our understanding of the factors governing their divergent activities.
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Affiliation(s)
- Florence J. Hardy
- Department
of Chemistry & Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, U.K.
| | - Matthew G. Quesne
- Research
Complex at Harwell, Rutherford Appleton
Laboratory, Harwell Oxford, Didcot, Oxon OX11
0FA, U.K.
- School
of Chemistry, Cardiff University, Main Building, Park Place, Cardiff CF10 3AT, U.K.
| | - Emilie F. Gérard
- Department
of Chemistry & Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, U.K.
| | - Jingming Zhao
- Department
of Chemistry & Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, U.K.
| | - Mary Ortmayer
- Department
of Chemistry & Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, U.K.
| | - Christopher J. Taylor
- Department
of Chemistry & Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, U.K.
| | - Hafiz S. Ali
- Department
of Chemistry & Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, U.K.
| | - Jeffrey W. Slater
- Department
of Chemistry and Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - Colin W. Levy
- Department
of Chemistry & Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, U.K.
| | - Derren J. Heyes
- Department
of Chemistry & Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, U.K.
| | - J. Martin Bollinger
- Department
of Chemistry and Department of Biochemistry and Molecular Biology, The Pennsylvania State University, University Park, Pennsylvania 16802, United States
| | - Sam P. de Visser
- Department
of Chemical Engineering & Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, U.K.
| | - Anthony P. Green
- Department
of Chemistry & Manchester Institute of Biotechnology, The University of Manchester, 131 Princess Street, Manchester M1 7DN, U.K.
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14
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Nguy AKL, Martinie RJ, Cai A, Seyedsayamdost MR. Detection of a Kinetically Competent Compound-I Intermediate in the Vancomycin Biosynthetic Enzyme OxyB. J Am Chem Soc 2024; 146:19629-19634. [PMID: 38989876 DOI: 10.1021/jacs.4c03102] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/12/2024]
Abstract
Cytochrome P450 enzymes are abundantly encoded in microbial genomes. Their reactions have two general outcomes, one involving oxygen insertion via a canonical "oxygen rebound" mechanism and a second that diverts from this pathway and leads to a wide array of products, notably intramolecular oxidative cross-links. The antibiotic of-last-resort, vancomycin, contains three such cross-links, which are crucial for biological activity and are installed by the P450 enzymes OxyB, OxyA, and OxyC. The mechanisms of these enzymes have remained elusive in part because of the difficulty in spectroscopically capturing transient intermediates. Using stopped-flow UV/visible absorption and rapid freeze-quench electron paramagnetic resonance spectroscopies, we show that OxyB generates the highly reactive compound-I intermediate, which can react with a model vancomycin peptide substrate in a kinetically competent fashion to generate product. Our results have implications for the mechanism of OxyB and are in line with the notion that oxygen rebound and oxidative cross-links share early steps in their catalytic cycles.
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Affiliation(s)
- Andy K L Nguy
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Ryan J Martinie
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
- Department of Chemistry, Hamilton College, Clinton, New York 13323, United States
| | - Amanda Cai
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
| | - Mohammad R Seyedsayamdost
- Department of Chemistry, Princeton University, Princeton, New Jersey 08544, United States
- Department of Molecular Biology, Princeton University, Princeton, New Jersey 08544, United States
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15
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Thomas J, Mokkawes T, Senft L, Dey A, Gordon JB, Ivanovic-Burmazovic I, de Visser SP, Goldberg DP. Axial Ligation Impedes Proton-Coupled Electron-Transfer Reactivity of a Synthetic Compound-I Analogue. J Am Chem Soc 2024; 146:12338-12354. [PMID: 38669456 PMCID: PMC11305010 DOI: 10.1021/jacs.3c08950] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/28/2024]
Abstract
The nature of the axial ligand in high-valent iron-oxo heme enzyme intermediates and related synthetic catalysts is a critical structural element for controlling proton-coupled electron-transfer (PCET) reactivity of these species. Herein, we describe the generation and characterization of three new 6-coordinate, iron(IV)-oxo porphyrinoid-π-cation-radical complexes and report their PCET reactivity together with a previously published 5-coordinate analogue, FeIV(O)(TBP8Cz+•) (TBP8Cz = octakis(p-tert-butylphenyl)corrolazinato3-) (2) (Cho, K. A high-valent iron-oxo corrolazine activates C-H bonds via hydrogen-atom transfer. J. Am. Chem. Soc. 2012, 134, 7392-7399). The new complexes FeIV(O)(TBP8Cz+•)(L) (L = 1-methyl imidazole (1-MeIm) (4a), 4-dimethylaminopyridine (DMAP) (4b), cyanide (CN-)(4c)) can be generated from either oxidation of the ferric precursors or by addition of L to the Compound-I (Cpd-I) analogue at low temperatures. These complexes were characterized by UV-vis, electron paramagnetic resonance (EPR), and Mössbauer spectroscopies, and cryospray ionization mass spectrometry (CSI-MS). Kinetic studies using 4-OMe-TEMPOH as a test substrate indicate that coordination of a sixth axial ligand dramatically lowers the PCET reactivity of the Cpd-I analogue (rates up to 7000 times slower). Extensive density functional theory (DFT) calculations together with the experimental data show that the trend in reactivity with the axial ligands does not correlate with the thermodynamic driving force for these reactions or the calculated strengths of the O-H bonds being formed in the FeIV(O-H) products, pointing to non-Bell-Evans-Polanyi behavior. However, the PCET reactivity does follow a trend with the bracketed reduction potential of Cpd-I analogues and calculated electron affinities. The combined data suggest a concerted mechanism (a concerted proton electron transfer (CPET)) and an asynchronous movement of the electron/proton pair in the transition state.
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Affiliation(s)
- Jithin Thomas
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Thirakorn Mokkawes
- The Manchester Institute of Biotechnology and Department of Chemical Engineering, The University of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom
| | - Laura Senft
- Department Chemie, Ludwig-Maximilians-Universität München, Butenandtstr., 5-13, Haus D, 81377 München, Germany
| | - Aniruddha Dey
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Jesse B Gordon
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
| | - Ivana Ivanovic-Burmazovic
- Department Chemie, Ludwig-Maximilians-Universität München, Butenandtstr., 5-13, Haus D, 81377 München, Germany
| | - Sam P de Visser
- The Manchester Institute of Biotechnology and Department of Chemical Engineering, The University of Manchester, 131 Princess Street, Manchester M1 7DN, United Kingdom
| | - David P Goldberg
- Department of Chemistry, The Johns Hopkins University, 3400 North Charles Street, Baltimore, Maryland 21218, United States
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16
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Gong Z, Wang L, Xu Y, Xie D, Qi X, Nam W, Guo M. Enhanced Reactivities of Iron(IV)-Oxo Porphyrin Species in Oxidation Reactions Promoted by Intramolecular Hydrogen-Bonding. ADVANCED SCIENCE (WEINHEIM, BADEN-WURTTEMBERG, GERMANY) 2024; 11:e2310333. [PMID: 38477431 PMCID: PMC11109629 DOI: 10.1002/advs.202310333] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 12/31/2023] [Revised: 02/19/2024] [Indexed: 03/14/2024]
Abstract
High-valent iron-oxo species are one of the common intermediates in both biological and biomimetic catalytic oxidation reactions. Recently, hydrogen-bonding (H-bonding) has been proved to be critical in determining the selectivity and reactivity. However, few examples have been established for mechanistic insights into the H-bonding effect. Moreover, intramolecular H-bonding effect on both C-H activation and oxygen atom transfer (OAT) reactions in synthetic porphyrin model system has not been investigated yet. In this study, a series of heme-containing iron(IV)-oxo porphyrin species with or without intramolecular H-bonding are synthesized and characterized. Kinetic studies revealed that intramolecular H-bonding can significantly enhance the reactivity of iron(IV)-oxo species in OAT, C-H activation, and electron-transfer reactions. This unprecedented unified H-bonding effect is elucidated by theoretical calculations, which showed that intramolecular H-bonding interactions lower the energy of the anti-bonding orbital of iron(IV)-oxo porphyrin species, resulting in the enhanced reactivities in oxidation reactions irrespective of the reaction type. To the best of the knowledge, this is the first extensive investigation on the intramolecular H-bonding effect in heme system. The results show that H-bonding interactions have a unified effect with iron(IV)-oxo porphyrin species in all three investigated reactions.
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Affiliation(s)
- Zhe Gong
- College of Chemistry and Molecular SciencesWuhan UniversityWuhanHubei430072P. R. China
| | - Liwei Wang
- College of Chemistry and Molecular SciencesWuhan UniversityWuhanHubei430072P. R. China
| | - Yiran Xu
- College of Chemistry and Molecular SciencesWuhan UniversityWuhanHubei430072P. R. China
| | - Duanfeng Xie
- College of Chemistry and Molecular SciencesWuhan UniversityWuhanHubei430072P. R. China
| | - Xiaotian Qi
- College of Chemistry and Molecular SciencesWuhan UniversityWuhanHubei430072P. R. China
| | - Wonwoo Nam
- Department of Chemistry and Nano ScienceEwha Womans UniversitySeoul03760South Korea
| | - Mian Guo
- College of Chemistry and Molecular SciencesWuhan UniversityWuhanHubei430072P. R. China
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17
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Kaur L, Mandal D. A density functional theory analysis of the C-H activation reactivity of iron(IV)-oxo complexes with an 'O' substituted tetramethylcyclam macrocycle. Dalton Trans 2024; 53:7527-7535. [PMID: 38597582 DOI: 10.1039/d4dt00063c] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 04/11/2024]
Abstract
In this article, we present a meticulous computational study to foresee the effect of an oxygen-rich macrocycle on the reactivity for C-H activation. For this study, a widely studied nonheme Fe(IV)O molecule with a TMC (1,4,8,11-tetramethyl 1,4,8,11-tetraazacyclotetradecane) macrocycle that is equatorially attached to four nitrogen atoms (designated as N4) and acetonitrile as an axial ligand has been taken into account. For the goal of hetero-substitution, step-by-step replacement of the N4 framework with O atoms, i.e., N4, N3O1, N2O2, N1O3, and O4 systems, has been considered, and dihydroanthracene (DHA) has been used as the substrate. In order to neutralise the system and prevent the self-interaction error in DFT, triflate counterions have also been included in the calculations. The study of the energetics of these C-H bond activation reactions and the potential energy surfaces mapped therefore reveal that the initial hydrogen abstraction, which is the rate-determining step, follows the two-state reactivity (TSR) pattern, which means that the originally excited quintet state falls lower in the transition state and the product. The reaction follows the hydrogen atom transfer (HAT) mechanism, as indicated by the spin density studies. The results revealed a fascinating reactivity order, in which the reactivity increases with the enrichment of the oxygen atom in the equatorial position, namely the order follows N4 < N3O1 < N2O2 < N1O3 < O4. The impacts of oxygen substitution on quantum mechanical tunneling and the H/D kinetic isotope effect have also been investigated. When analysing the causes of this reactivity pattern, a number of variables have been identified, including the reactant-like transition structure, spin density distribution, distortion energy, and energies of the electron acceptor orbital, i.e., the energy of the LUMO (σ*z2), which validate the obtained outcome. Our results also show very good agreement with earlier combined experimental and theoretical studies considering TMC and TMCO-type complexes. The DFT predictions reported here will undoubtedly encourage experimental research in this biomimetic field, as they provide an alternative with higher reactivity in which heteroatoms can be substituted for the traditional nitrogen atom.
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Affiliation(s)
- Lovleen Kaur
- Department of Chemistry and Biochemistry, Thapar Institute of Engineering and Technology, Patiala-147004, Punjab, India.
| | - Debasish Mandal
- Department of Chemistry and Biochemistry, Thapar Institute of Engineering and Technology, Patiala-147004, Punjab, India.
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18
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Ansari M, Bhattacharjee S, Pantazis DA. Correlating Structure with Spectroscopy in Ascorbate Peroxidase Compound II. J Am Chem Soc 2024; 146:9640-9656. [PMID: 38530124 PMCID: PMC11009960 DOI: 10.1021/jacs.3c13169] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/23/2023] [Revised: 03/15/2024] [Accepted: 03/15/2024] [Indexed: 03/27/2024]
Abstract
Structural and spectroscopic investigations of compound II in ascorbate peroxidase (APX) have yielded conflicting conclusions regarding the protonation state of the crucial Fe(IV) intermediate. Neutron diffraction and crystallographic data support an iron(IV)-hydroxo formulation, whereas Mössbauer, X-ray absorption (XAS), and nuclear resonance vibrational spectroscopy (NRVS) studies appear consistent with an iron(IV)-oxo species. Here we examine APX with spectroscopy-oriented QM/MM calculations and extensive exploration of the conformational space for both possible formulations of compound II. We establish that irrespective of variations in the orientation of a vicinal arginine residue and potential reorganization of proximal water molecules and hydrogen bonding, the Fe-O distances for the oxo and hydroxo forms consistently fall within distinct, narrow, and nonoverlapping ranges. The accuracy of geometric parameters is validated by coupled-cluster calculations with the domain-based local pair natural orbital approach, DLPNO-CCSD(T). QM/MM calculations of spectroscopic properties are conducted for all structural variants, encompassing Mössbauer, optical, X-ray absorption, and X-ray emission spectroscopies and NRVS. All spectroscopic observations can be assigned uniquely to an Fe(IV)═O form. A terminal hydroxy group cannot be reconciled with the spectroscopic data. Under no conditions can the Fe(IV)═O distance be sufficiently elongated to approach the crystallographically reported Fe-O distance. The latter is consistent only with a hydroxo species, either Fe(IV) or Fe(III). Our findings strongly support the Fe(IV)═O formulation of APX-II and highlight unresolved discrepancies in the nature of samples used across different experimental studies.
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Affiliation(s)
- Mursaleem Ansari
- Max-Planck-Institut für
Kohlenforschung, Kaiser-Wilhelm-Platz
1, Mülheim an der Ruhr 45470, Germany
| | - Sinjini Bhattacharjee
- Max-Planck-Institut für
Kohlenforschung, Kaiser-Wilhelm-Platz
1, Mülheim an der Ruhr 45470, Germany
| | - Dimitrios A. Pantazis
- Max-Planck-Institut für
Kohlenforschung, Kaiser-Wilhelm-Platz
1, Mülheim an der Ruhr 45470, Germany
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19
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Keshari K, Santra A, Velasco L, Sauvan M, Kaur S, Ugale AD, Munshi S, Marco JF, Moonshiram D, Paria S. Functional Model of Compound II of Cytochrome P450: Spectroscopic Characterization and Reactivity Studies of a Fe IV-OH Complex. JACS AU 2024; 4:1142-1154. [PMID: 38559734 PMCID: PMC10976569 DOI: 10.1021/jacsau.3c00844] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Figures] [Subscribe] [Scholar Register] [Received: 12/29/2023] [Revised: 02/12/2024] [Accepted: 02/26/2024] [Indexed: 04/04/2024]
Abstract
Herein, we show that the reaction of a mononuclear FeIII(OH) complex (1) with N-tosyliminobenzyliodinane (PhINTs) resulted in the formation of a FeIV(OH) species (3). The obtained complex 3 was characterized by an array of spectroscopic techniques and represented a rare example of a synthetic FeIV(OH) complex. The reaction of 1 with the one-electron oxidizing agent was reported to form a ligand-oxidized FeIII(OH) complex (2). 3 revealed a one-electron reduction potential of -0.22 V vs Fc+/Fc at -15 °C, which was 150 mV anodically shifted than 2 (Ered = -0.37 V vs Fc+/Fc at -15 °C), inferring 3 to be more oxidizing than 2. 3 reacted spontaneously with (4-OMe-C6H4)3C• to form (4-OMe-C6H4)3C(OH) through rebound of the OH group and displayed significantly faster reactivity than 2. Further, activation of the hydrocarbon C-H and the phenolic O-H bond by 2 and 3 was compared and showed that 3 is a stronger oxidant than 2. A detailed kinetic study established the occurrence of a concerted proton-electron transfer/hydrogen atom transfer reaction of 3. Studying one-electron reduction of 2 and 3 using decamethylferrocene (Fc*) revealed a higher ket of 3 than 2. The study established that the primary coordination sphere around Fe and the redox state of the metal center is very crucial in controlling the reactivity of high-valent Fe-OH complexes. Further, a FeIII(OMe) complex (4) was synthesized and thoroughly characterized, including X-ray structure determination. The reaction of 4 with PhINTs resulted in the formation of a FeIV(OMe) species (5), revealing the presence of two FeIV species with isomer shifts of -0.11 mm/s and = 0.17 mm/s in the Mössbauer spectrum and showed FeIV/FeIII potential at -0.36 V vs Fc+/Fc couple in acetonitrile at -15 °C. The reactivity studies of 5 were investigated and compared with the FeIV(OH) complex (3).
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Affiliation(s)
- Kritika Keshari
- Department
of Chemistry, Indian Institute of Technology
Delhi, Hauz Khas, New Delhi 110016, India
| | - Aakash Santra
- Department
of Chemistry, Indian Institute of Technology
Delhi, Hauz Khas, New Delhi 110016, India
| | - Lucía Velasco
- Instituto
de Ciencia de Materiales de Madrid, Consejo
Superior de Investigaciones Científicas, Sor Juana Inés de la Cruz, 3, Madrid 28049, Spain
| | - Maxime Sauvan
- Instituto
de Ciencia de Materiales de Madrid, Consejo
Superior de Investigaciones Científicas, Sor Juana Inés de la Cruz, 3, Madrid 28049, Spain
| | - Simarjeet Kaur
- Department
of Chemistry, Indian Institute of Technology
Delhi, Hauz Khas, New Delhi 110016, India
| | - Ashok D. Ugale
- Instituto
de Ciencia de Materiales de Madrid, Consejo
Superior de Investigaciones Científicas, Sor Juana Inés de la Cruz, 3, Madrid 28049, Spain
| | - Sandip Munshi
- School
of Chemical Science, Indian Association
for the Cultivation of Science, Raja S C Mulliick Road, Kolkata 700032, India
| | - J. F. Marco
- Instituto
de Quimica Fisica Blas Cabrera, Consejo
Superior de Investigaciones Científicas, C. de Serrano, 119, Serrano, Madrid 28006, Spain
| | - Dooshaye Moonshiram
- Instituto
de Ciencia de Materiales de Madrid, Consejo
Superior de Investigaciones Científicas, Sor Juana Inés de la Cruz, 3, Madrid 28049, Spain
| | - Sayantan Paria
- Department
of Chemistry, Indian Institute of Technology
Delhi, Hauz Khas, New Delhi 110016, India
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20
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Amaya JA, Manley OM, Bian JC, Rutland CD, Leschinsky N, Ratigan SC, Makris TM. Enhancing ferryl accumulation in H 2O 2-dependent cytochrome P450s. J Inorg Biochem 2024; 252:112458. [PMID: 38141432 DOI: 10.1016/j.jinorgbio.2023.112458] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 11/02/2023] [Revised: 12/08/2023] [Accepted: 12/16/2023] [Indexed: 12/25/2023]
Abstract
A facile strategy is presented to enhance the accumulation of ferryl (iron(IV)-oxo) species in H2O2 dependent cytochrome P450s (CYPs) of the CYP152 family. We report the characterization of a highly chemoselective CYP decarboxylase from Staphylococcus aureus (OleTSA) that is soluble at high concentrations. Examination of OleTSA Compound I (CpdI) accumulation with a variety of fatty acid substrates reveals a dependence on resting spin-state equilibrium. Alteration of this equilibrium through targeted mutagenesis of the proximal pocket favors the high-spin form, and as a result, enhances Cpd-I accumulation to nearly stoichiometric yields.
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Affiliation(s)
- Jose A Amaya
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC 29208, United States of America
| | - Olivia M Manley
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC 29208, United States of America; Department of Structural and Molecular Biochemistry, North Carolina State University, Raleigh, NC 27695, United States of America
| | - Julia C Bian
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC 29208, United States of America
| | - Cooper D Rutland
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC 29208, United States of America
| | - Nicholas Leschinsky
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC 29208, United States of America
| | - Steven C Ratigan
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC 29208, United States of America
| | - Thomas M Makris
- Department of Chemistry and Biochemistry, University of South Carolina, Columbia, SC 29208, United States of America; Department of Structural and Molecular Biochemistry, North Carolina State University, Raleigh, NC 27695, United States of America; Department of Chemistry, North Carolina State University, Raleigh, NC 27695, United States of America.
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21
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Awasthi A, Mallojjala SC, Kumar R, Eerlapally R, Hirschi JS, Draksharapu A. Altering the Localization of an Unpaired Spin in a Formal Ni(V) Species. Chemistry 2024; 30:e202302824. [PMID: 37903027 PMCID: PMC10841873 DOI: 10.1002/chem.202302824] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/30/2023] [Revised: 10/28/2023] [Accepted: 10/30/2023] [Indexed: 11/01/2023]
Abstract
The participation of both ligand and the metal center in the redox events has been recognized as one of the ways to attain the formal high valent complexes for the late 3d metals, such as Ni and Cu. Such an approach has been employed successfully to stabilize a Ni(III) bisphenoxyl diradical species in which there exist an equilibrium between the ligand and the Ni localized resultant spin. The present work, however, broadens the scope of the previously reported three oxidized equivalent species by conveying the approaches that tend to affect the reported equilibrium in CH3 CN at 233 K. Various spectroscopic characterization revealed that employing exogenous N-donor ligands like 1-methyl imidazole and pyridine favors the formation of the Ni centered localized spin though axial binding. In contrast, due to its steric hinderance, quinoline favors an exclusive ligand localized radical species. DFT studies shed light on the novel intermediates' complex electronic structure. Further, the three oxidized equivalent species with the Ni centered spin was examined for its hydrogen atom abstraction ability stressing their key role in alike reactions.
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Affiliation(s)
- Ayushi Awasthi
- Southern Laboratories-208 A, Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur, 208016, India
| | | | - Rakesh Kumar
- Southern Laboratories-208 A, Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur, 208016, India
| | - Raju Eerlapally
- Southern Laboratories-208 A, Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur, 208016, India
| | - Jennifer S Hirschi
- Department of Chemistry, Binghamton University, Binghamton, New York, 13902, USA
| | - Apparao Draksharapu
- Southern Laboratories-208 A, Department of Chemistry, Indian Institute of Technology Kanpur, Kanpur, 208016, India
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22
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Groff BD, Koronkiewicz B, Mayer JM. Polar Effects in Hydrogen Atom Transfer Reactions from a Proton-Coupled Electron Transfer (PCET) Perspective: Abstractions from Toluenes. J Org Chem 2023; 88:16259-16269. [PMID: 37978890 PMCID: PMC10841608 DOI: 10.1021/acs.joc.3c01748] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/19/2023]
Abstract
Rate constants for hydrogen atom transfer (HAT) reactions of substituted toluenes with tert-butyl, tert-butoxy, and tert-butylperoxyl radicals are reanalyzed here using the free energies of related proton transfer (PT) and electron transfer (ET) reactions, calculated from an extensive set of compiled or estimated pKa and E° values. The Eyring activation energies ΔGHAT‡ do not correlate with the relatively constant ΔG°HAT, but do correlate close-to-linearly with ΔG°PT and ΔG°ET. The slopes of correlations are similar for the three radicals except that the tBu• barriers shift in the opposite direction from the oxyl radical barriers─a clear example of the qualitative "polar effect" in HAT reactions. When cast quantitatively in free energy terms (ΔGHAT‡ vs ΔG°PT/ET), this effect is very small, only 5-10% of the typical Bell-Evans-Polanyi (BEP) effect of changing ΔG°HAT. This analysis also highlights connections between polar effects and the concepts of "asynchronous" or "imbalanced" HAT reactions in which the PT and ET components of ΔG°HAT contribute differently to the barrier. Finally, these observations are discussed in light of the traditional explanations of polar effects and the potential for a rubric that could predict the extent to which contra-thermodynamic selectivity may be achieved in HAT reactions.
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Affiliation(s)
- Benjamin D. Groff
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
| | - Brian Koronkiewicz
- Current Address: Johns Hopkins University Applied Physics Laboratory, 11091 Johns Hopkins Rd, Laurel, MD 20723
| | - James M. Mayer
- Department of Chemistry, Yale University, New Haven, Connecticut 06520, United States
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23
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da Silva MAR, Tarakina NV, Filho JBG, Cunha CS, Rocha GFSR, Diab GAA, Ando RA, Savateev O, Agirrezabal-Telleria I, Silva IF, Stolfi S, Ghigna P, Fagnoni M, Ravelli D, Torelli P, Braglia L, Teixeira IF. Single-Atoms on Crystalline Carbon Nitrides for Selective C─H Photooxidation: A Bridge to Achieve Homogeneous Pathways in Heterogeneous Materials. ADVANCED MATERIALS (DEERFIELD BEACH, FLA.) 2023; 35:e2304152. [PMID: 37986204 DOI: 10.1002/adma.202304152] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Subscribe] [Scholar Register] [Received: 05/04/2023] [Revised: 09/15/2023] [Indexed: 11/22/2023]
Abstract
Single-atom catalysis is a field of paramount importance in contemporary science due to its exceptional ability to combine the domains of homogeneous and heterogeneous catalysis. Iron and manganese metalloenzymes are known to be effective in C─H oxidation reactions in nature, inspiring scientists to mimic their active sites in artificial catalytic systems. Herein, a simple and versatile cation exchange method is successfully employed to stabilize low-cost iron and manganese single-atoms in poly(heptazine imides) (PHI). The resulting materials are employed as photocatalysts for toluene oxidation, demonstrating remarkable selectivity toward benzaldehyde. The protocol is then extended to the selective oxidation of different substrates, including (substituted) alkylaromatics, benzyl alcohols, and sulfides. Detailed mechanistic investigations revealed that iron- and manganese-containing photocatalysts work through a similar mechanism via the formation of high-valent M═O species. Operando X-ray absorption spectroscopy (XAS) is employed to confirm the formation of high-valent iron- and manganese-oxo species, typically found in metalloenzymes involved in highly selective C─H oxidations.
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Affiliation(s)
- Marcos A R da Silva
- Department of Chemistry, Federal University of São Carlos, São Carlos, São Paulo, 13565-905, Brazil
| | - Nadezda V Tarakina
- Department of Colloid Chemistry, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, D-14476, Potsdam, Germany
| | - José B G Filho
- Department of Chemistry, ICEx, Federal University of Minas Gerais, Belo Horizonte, MG, 31270-901, Brazil
| | - Carla S Cunha
- Department of Chemistry, Federal University of São Carlos, São Carlos, São Paulo, 13565-905, Brazil
| | - Guilherme F S R Rocha
- Department of Chemistry, Federal University of São Carlos, São Carlos, São Paulo, 13565-905, Brazil
| | - Gabriel A A Diab
- Department of Chemistry, Federal University of São Carlos, São Carlos, São Paulo, 13565-905, Brazil
| | - Rômulo Augusto Ando
- Department of Fundamental Chemistry, Institute of Chemistry, University of São Paulo, Av. Prof. Lineu Prestes, 748, São Paulo, 05508-000, Brazil
| | - Oleksandr Savateev
- Department of Colloid Chemistry, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, D-14476, Potsdam, Germany
| | - Iker Agirrezabal-Telleria
- Department of Chemical and Environmental Engineering of the Bilbao Engineering School, University of Basque Country (UPV/EHU), Plaza Torres Quevedo 1, Bilbao, 48013, Spain
| | - Ingrid F Silva
- Department of Colloid Chemistry, Max Planck Institute of Colloids and Interfaces, Am Mühlenberg 1, D-14476, Potsdam, Germany
| | - Sara Stolfi
- Department of Chemistry, University of Pavia, viale Taramelli 12, Pavia, 27100, Italy
| | - Paolo Ghigna
- Department of Chemistry, University of Pavia, viale Taramelli 12, Pavia, 27100, Italy
| | - Maurizio Fagnoni
- Department of Chemistry, University of Pavia, viale Taramelli 12, Pavia, 27100, Italy
| | - Davide Ravelli
- Department of Chemistry, University of Pavia, viale Taramelli 12, Pavia, 27100, Italy
| | - Piero Torelli
- TASC Laboratory, CNR-IOM, Istituto Officina dei Materiali, Trieste, 34149, Italy
| | - Luca Braglia
- TASC Laboratory, CNR-IOM, Istituto Officina dei Materiali, Trieste, 34149, Italy
| | - Ivo F Teixeira
- Department of Chemistry, Federal University of São Carlos, São Carlos, São Paulo, 13565-905, Brazil
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24
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Gobbato T, Volpato GA, Sartorel A, Bonchio M. A breath of sunshine: oxygenic photosynthesis by functional molecular architectures. Chem Sci 2023; 14:12402-12429. [PMID: 38020375 PMCID: PMC10646967 DOI: 10.1039/d3sc03780k] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/21/2023] [Accepted: 09/28/2023] [Indexed: 12/01/2023] Open
Abstract
The conversion of light into chemical energy is the game-changer enabling technology for the energetic transition to renewable and clean solar fuels. The photochemistry of interest includes the overall reductive/oxidative splitting of water into hydrogen and oxygen and alternatives based on the reductive conversion of carbon dioxide or nitrogen, as primary sources of energy-rich products. Devices capable of performing such transformations are based on the integration of three sequential core functions: light absorption, photo-induced charge separation, and the photo-activated breaking/making of molecular bonds via specific catalytic routes. The key to success does not rely simply on the individual components' performance, but on their optimized integration in terms of type, number, geometry, spacing, and linkers dictating the photosynthetic architecture. Natural photosynthesis has evolved along this concept, by integrating each functional component in one specialized "body" (from the Greek word "soma") to enable the conversion of light quanta with high efficiency. Therefore, the natural "quantasome" represents the key paradigm to inspire man-made constructs for artificial photosynthesis. The case study presented in this perspective article deals with the design of artificial photosynthetic systems for water oxidation and oxygen production, engineered as molecular architectures then rendered on electrodic surfaces. Water oxidation to oxygen is indeed the pervasive oxidative reaction used by photosynthetic organisms, as the source of reducing equivalents (electrons and protons) to be delivered for the processing of high-energy products. Considering the vast and abundant supply of water (including seawater) as a renewable source on our planet, this is also a very appealing option for photosynthetic energy devices. We will showcase the progress in the last 15 years (2009-2023) in the strategies for integrating functional building blocks as molecular photosensitizers, multi-redox water oxidation catalysts and semiconductor materials, highlighting how additional components such as redox mediators, hydrophilic/hydrophobic pendants, and protective layers can impact on the overall photosynthetic performance. Emerging directions consider the modular tuning of the multi-component device, in order to target a diversity of photocatalytic oxidations, expanding the scope of the primary electron and proton sources while enhancing the added-value of the oxidation product beyond oxygen: the selective photooxidation of organics combines the green chemistry vision with renewable energy schemes and is expected to explode in coming years.
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Affiliation(s)
- Thomas Gobbato
- Department of Chemical Sciences, University of Padova via Marzolo 1 35131 Padova Italy
| | - Giulia Alice Volpato
- Department of Chemical Sciences, University of Padova via Marzolo 1 35131 Padova Italy
| | - Andrea Sartorel
- Department of Chemical Sciences, University of Padova via Marzolo 1 35131 Padova Italy
| | - Marcella Bonchio
- Department of Chemical Sciences, University of Padova via Marzolo 1 35131 Padova Italy
- ITM-CNR Section of Padova, INSTM Unit of Padova via Marzolo 1 35131 Padova Italy
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25
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Schneider JE, Anderson JS. Reconciling Imbalanced and Nonadiabatic Reactivity in Transition Metal-Oxo-Mediated Concerted Proton Electron Transfer (CPET). J Phys Chem Lett 2023; 14:9548-9555. [PMID: 37856336 DOI: 10.1021/acs.jpclett.3c02318] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 10/21/2023]
Abstract
Recently, there have been several experimental demonstrations of how the rates of concerted proton electron transfer (CPET) are affected by stepwise thermodynamic parameters of only proton (ΔG°PT) or electron (ΔG°ET) transfer. Semiclassical structure-activity relationships have been invoked to rationalize these linear free energy relationships, but it is not clear how they would manifest in a nonadiabatic reaction. Using density functional theory calculations, we demonstrate how a decrease in ΔG°PT can lead to transition state imbalance in a nonadiabatic framework. We then use these calculations to anchor a theoretical model that reproduces experimental trends with ΔG°PT and ΔG°ET. Our results reconcile predictions from semiclassical transition state theory with models that treat proton transfer quantum mechanically in CPET reactivity, make new predictions about the importance of basicity for uphill CPET reactions, and suggest similar treatments may be possible for other nonadiabatic reactions.
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Affiliation(s)
- Joseph E Schneider
- Department of Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
| | - John S Anderson
- Department of Chemistry, The University of Chicago, Chicago, Illinois 60637, United States
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26
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Thomas J, Goldberg DP. Factors controlling the reactivity of synthetic compound-I Analogs. J PORPHYR PHTHALOCYA 2023; 27:1489-1501. [PMID: 39132380 PMCID: PMC11308481 DOI: 10.1142/s1088424623300136] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 08/13/2024]
Abstract
A high-valent iron(IV)-oxo porphyrin radical cation (FeIV(O)(porph+•) serves as a key, reactive intermediate for a range of heme enzymes, including cytochrome P450 (CYP), horseradish peroxidase (HRP), and catalase (CAT). Synthetic analogs of this intermediate, known as Compound-I (Cpd-I) in the heme enzyme literature, have been generated with different tetrapyrrolic, macrocyclic ligands, including porphyrin derivatives, and the closely related ring-contracted macrocycles, corroles and corrolazines. These synthetic analogs have been useful for assigning and understanding structural and spectroscopic features and examining the reactivity of Cpd-I-like species in controlled and well-defined environments. This review focuses on summarizing recent developments in the synthesis and reactivity of high-valent iron-oxo porphyrinoid complexes in two main classes of reactions, proton-coupled electron transfer (PCET) and oxygen atom transfer (OAT). The relationship between the structure of the complexes and their reactivity is emphasized, including the influence of axial ligation and peripheral macrocyclic substitution, as well as the effects of solvent and secondary coordination spheres on the reactivity of the Cpd-I analogs. In bringing together the latest findings on Cpd-I analogs, this review intends to broaden our current understanding of the factors that control the stability and reactivity of Cpd-I species. This new knowledge should, in turn, point toward new synthetic strategies for constructing catalysts that rely on Cpd-I-like reactive intermediates.
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Affiliation(s)
- Jithin Thomas
- Department of Chemistry, The Johns Hopkins University, 3400N. Charles Street, Baltimore, Maryland 21218, USA
| | - David P. Goldberg
- Department of Chemistry, The Johns Hopkins University, 3400N. Charles Street, Baltimore, Maryland 21218, USA
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27
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Uchida T. Development of Catalytic Site-Selective C-H Oxidation. CHEM REC 2023; 23:e202300156. [PMID: 37350373 DOI: 10.1002/tcr.202300156] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 04/30/2023] [Revised: 06/05/2023] [Indexed: 06/24/2023]
Abstract
Direct C-H bond oxygenation is a strong and useful tool for the construction of oxygen functional groups. After Chen and White's pioneering works, various non-heme-type iron and manganese complexes were introduced, leading to strong development in this area. However, for this method to become a truly useful tool for synthetic organic chemistry, it is necessary to make further efforts to improve site-selectivity, and catalyst durability. Recently, we found that non-heme-type ruthenium complex cis-1 presents efficient catalysis in C(sp3 )-H oxygenation under acidic conditions. cis-1-catalysed C-H oxygenation can oxidize various substrates including highly complex natural compounds using hypervalent iodine reagents as a terminal oxidant. Moreover, the catalyst system can use almost stoichiometric water molecules as the oxygen source through reversible hydrolysis of PhI(OCOR)2 . It is a strong tool for producing isotopic-oxygen-labelled compounds. Moreover, the environmentally friendly hydrogen peroxide can be used as a terminal oxidant under acidic conditions.
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Affiliation(s)
- Tatsuya Uchida
- Faculty of Arts and Science, Kyushu University, 744 Motooka, Nishi-ku, Fukuoka, 819-0395, Japan
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28
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Follmer AH, Borovik AS. The role of basicity in selective C-H bond activation by transition metal-oxidos. Dalton Trans 2023; 52:11005-11016. [PMID: 37497779 PMCID: PMC10619463 DOI: 10.1039/d3dt01781h] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 07/28/2023]
Abstract
The development of (bio)catalysts capable of selectively activating strong C-H bonds is a continuing challenge in modern chemistry. In both metalloenzymes and synthetic systems capable of activating C-H bonds, transition metal-oxido intermediates serve as the active species for reactivity whose thermodynamic properties influence the bond strengths they are capable of activating. In this Frontier article, we present current ideas of how the basicity of transition metal-oxidos impacts their reactivity with C-H bonds and present new opportunities within this field. We highlight recent insights into the role basicity plays in the activation process and its influence on mechanism, as well as the important role that secondary coordination sphere effects, such as hydrogen bonds, in tuning the basicity of the metal-oxido species is discussed.
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Affiliation(s)
- Alec H Follmer
- Department of Chemistry, University of California-Irvine, Irvine, CA 92697-3900, USA.
| | - A S Borovik
- Department of Chemistry, University of California-Irvine, Irvine, CA 92697-3900, USA.
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29
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Rade LL, Generoso WC, Das S, Souza AS, Silveira RL, Avila MC, Vieira PS, Miyamoto RY, Lima ABB, Aricetti JA, de Melo RR, Milan N, Persinoti GF, Bonomi AMFLJ, Murakami MT, Makris TM, Zanphorlin LM. Dimer-assisted mechanism of (un)saturated fatty acid decarboxylation for alkene production. Proc Natl Acad Sci U S A 2023; 120:e2221483120. [PMID: 37216508 PMCID: PMC10235961 DOI: 10.1073/pnas.2221483120] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 12/19/2022] [Accepted: 04/24/2023] [Indexed: 05/24/2023] Open
Abstract
The enzymatic decarboxylation of fatty acids (FAs) represents an advance toward the development of biological routes to produce drop-in hydrocarbons. The current mechanism for the P450-catalyzed decarboxylation has been largely established from the bacterial cytochrome P450 OleTJE. Herein, we describe OleTPRN, a poly-unsaturated alkene-producing decarboxylase that outrivals the functional properties of the model enzyme and exploits a distinct molecular mechanism for substrate binding and chemoselectivity. In addition to the high conversion rates into alkenes from a broad range of saturated FAs without dependence on high salt concentrations, OleTPRN can also efficiently produce alkenes from unsaturated (oleic and linoleic) acids, the most abundant FAs found in nature. OleTPRN performs carbon-carbon cleavage by a catalytic itinerary that involves hydrogen-atom transfer by the heme-ferryl intermediate Compound I and features a hydrophobic cradle at the distal region of the substrate-binding pocket, not found in OleTJE, which is proposed to play a role in the productive binding of long-chain FAs and favors the rapid release of products from the metabolism of short-chain FAs. Moreover, it is shown that the dimeric configuration of OleTPRN is involved in the stabilization of the A-A' helical motif, a second-coordination sphere of the substrate, which contributes to the proper accommodation of the aliphatic tail in the distal and medial active-site pocket. These findings provide an alternative molecular mechanism for alkene production by P450 peroxygenases, creating new opportunities for biological production of renewable hydrocarbons.
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Affiliation(s)
- Leticia L. Rade
- Brazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas13083-100, Brazil
| | - Wesley C. Generoso
- Brazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas13083-100, Brazil
| | - Suman Das
- Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, NC27695-7622
| | - Amanda S. Souza
- Brazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas13083-100, Brazil
| | - Rodrigo L. Silveira
- Institute of Chemistry, Federal University of Rio de Janeiro, Rio de Janeiro21941-594, Brazil
| | - Mayara C. Avila
- Brazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas13083-100, Brazil
| | - Plinio S. Vieira
- Brazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas13083-100, Brazil
| | - Renan Y. Miyamoto
- Brazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas13083-100, Brazil
| | - Ana B. B. Lima
- Institute of Chemistry, Federal University of Rio de Janeiro, Rio de Janeiro21941-594, Brazil
| | - Juliana A. Aricetti
- Brazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas13083-100, Brazil
| | - Ricardo R. de Melo
- Brazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas13083-100, Brazil
| | - Natalia Milan
- Brazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas13083-100, Brazil
| | - Gabriela F. Persinoti
- Brazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas13083-100, Brazil
| | - Antonio M. F. L. J. Bonomi
- Brazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas13083-100, Brazil
| | - Mario T. Murakami
- Brazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas13083-100, Brazil
| | - Thomas M. Makris
- Department of Molecular and Structural Biochemistry, North Carolina State University, Raleigh, NC27695-7622
| | - Leticia M. Zanphorlin
- Brazilian Biorenewables National Laboratory, Brazilian Center for Research in Energy and Materials, Campinas13083-100, Brazil
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30
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Nolan K, Wang Y. Combined spectroscopic and structural approaches to explore the mechanism of histidine-ligated heme-dependent aromatic oxygenases. Methods Enzymol 2023; 685:405-432. [PMID: 37245909 PMCID: PMC11057917 DOI: 10.1016/bs.mie.2023.03.008] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 05/30/2023]
Abstract
The emergence of histidine-ligated heme-dependent aromatic oxygenases (HDAOs) has greatly enriched heme chemistry, and more studies are required to appreciate the diversity found in His-ligated heme proteins. This chapter describes recent methods in probing the HDAO mechanisms in detail, along with the discussion on how they can benefit structure-function studies of other heme systems. The experimental details are centered on studies of TyrHs, followed by explanation of how the results obtained would advance the understanding of the specific enzyme and also HDAOs. Spectroscopic methods, namely, electronic absorption and EPR spectroscopies, and X-ray crystallography are valuable techniques commonly used to characterize the properties of the heme center and the nature of heme-based intermediate. Herein, we show that the combination of these tools are extremely powerful, not only because one can acquire electronic, magnetic, and conformational information from different phases, but also because of the advantages brought by spectroscopic characterization on crystal samples.
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Affiliation(s)
- Katie Nolan
- Department of Chemistry, University of Georgia, Athens, GA, United States
| | - Yifan Wang
- Department of Chemistry, University of Georgia, Athens, GA, United States.
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31
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Abstract
Enzymes fold into three-dimensional structures to distribute amino acid residues for catalysis, which inspired the supramolecular approach to construct enzyme-mimicking catalysts. A key concern in the development of supramolecular strategies is the ability to confine and orient functional groups to form enzyme-like active sites in artificial materials. This review introduces the design principles and construction of supramolecular nanomaterials exhibiting catalytic functions of heme-dependent enzymes, a large class of metalloproteins, which rely on a heme cofactor and spatially configured residues to catalyze diverse reactions via a complex multistep mechanism. We focus on the structure-activity relationship of the supramolecular catalysts and their applications in materials synthesis/degradation, biosensing, and therapeutics. The heme-free catalysts that catalyze reactions achieved by hemeproteins are also briefly discussed. Towards the end of the review, we discuss the outlook on the challenges related to catalyst design and future prospective, including the development of structure-resolving techniques and design concepts, with the aim of creating enzyme-mimicking materials that possess catalytic power rivaling that of natural enzymes..
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Affiliation(s)
- Yuanxi Liu
- State Key Laboratory of Organic-Inorganic Composites, Key Lab of Biomedical Materials of Natural Macromolecules (Ministry of Education), Beijing Laboratory of Biomedical Materials, College of Materials Science and Engineering, Beijing University of Chemical Technology, Beijing 100029, China
| | - Zhen-Gang Wang
- State Key Laboratory of Organic-Inorganic Composites, Key Lab of Biomedical Materials of Natural Macromolecules (Ministry of Education), Beijing Laboratory of Biomedical Materials, College of Materials Science and Engineering, Beijing University of Chemical Technology, Beijing 100029, China
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32
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Schlachta TP, Kühn FE. Cyclic iron tetra N-heterocyclic carbenes: synthesis, properties, reactivity, and catalysis. Chem Soc Rev 2023; 52:2238-2277. [PMID: 36852959 DOI: 10.1039/d2cs01064j] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/01/2023]
Abstract
Cyclic iron tetracarbenes are an emerging class of macrocyclic iron N-heterocyclic carbene (NHC) complexes. They can be considered as an organometallic compound class inspired by their heme analogs, however, their electronic properties differ, e.g. due to the very strong σ-donation of the four combined NHCs in equatorial coordination. The ligand framework of iron tetracarbenes can be readily modified, allowing fine-tuning of the structural and electronic properties of the complexes. The properties of iron tetracarbene complexes are discussed quantitatively and correlations are established. The electronic nature of the tetracarbene ligand allows the isolation of uncommon iron(III) and iron(IV) species and reveals a unique reactivity. Iron tetracarbenes are successfully applied in C-H activation, CO2 reduction, aziridination and epoxidation catalysis and mechanisms as well as decomposition pathways are described. This review will help researchers evaluate the structural and electronic properties of their complexes and target their catalyst properties through ligand design.
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Affiliation(s)
- Tim P Schlachta
- Technical University of Munich, School of Natural Sciences, Department of Chemistry and Catalysis Research Center, Molecular Catalysis, Lichtenbergstraße 4, 85748 Garching, Germany.
| | - Fritz E Kühn
- Technical University of Munich, School of Natural Sciences, Department of Chemistry and Catalysis Research Center, Molecular Catalysis, Lichtenbergstraße 4, 85748 Garching, Germany.
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33
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Zhao N, Goetz MK, Schneider JE, Anderson JS. Testing the Limits of Imbalanced CPET Reactivity: Mechanistic Crossover in H-Atom Abstraction by Co(III)-Oxo Complexes. J Am Chem Soc 2023; 145:5664-5673. [PMID: 36867838 PMCID: PMC10023487 DOI: 10.1021/jacs.2c10553] [Citation(s) in RCA: 4] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 03/05/2023]
Abstract
Transition metal-oxo complexes are key intermediates in a variety of oxidative transformations, notably C-H bond activation. The relative rate of C-H bond activation mediated by transition metal-oxo complexes is typically predicated on substrate bond dissociation free energy in cases with a concerted proton-electron transfer (CPET). However, recent work has demonstrated that alternative stepwise thermodynamic contributions such as acidity/basicity or redox potentials of the substrate/metal-oxo may dominate in some cases. In this context, we have found basicity-governed concerted activation of C-H bonds with the terminal CoIII-oxo complex PhB(tBuIm)3CoIIIO. We have been interested in testing the limits of such basicity-dependent reactivity and have synthesized an analogous, more basic complex, PhB(AdIm)3CoIIIO, and studied its reactivity with H-atom donors. This complex displays a higher degree of imbalanced CPET reactivity than PhB(tBuIm)3CoIIIO with C-H substrates, and O-H activation of phenol substrates displays mechanistic crossover to stepwise proton transfer-electron transfer (PTET) reactivity. Analysis of the thermodynamics of proton transfer (PT) and electron transfer (ET) reveals a distinct thermodynamic crossing point between concerted and stepwise reactivity. Furthermore, the relative rates of stepwise and concerted reactivity suggest that maximally imbalanced systems provide the fastest CPET rates up to the point of mechanistic crossover, which results in slower product formation.
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Affiliation(s)
- Norman Zhao
- Department of Chemistry, University of Chicago, Chicago, Illinois 60637, United States
| | | | - Joseph E. Schneider
- Department of Chemistry, University of Chicago, Chicago, Illinois 60637, United States
| | - John S. Anderson
- Department of Chemistry, University of Chicago, Chicago, Illinois 60637, United States
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34
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Jana S, Pattanayak S, Das S, Ghosh M, Velasco L, Moonshiram D, Sen Gupta S. Comparing the reactivity of an oxoiron(IV) cation radical and its oxoiron(V) tautomer towards C-H bonds. Chem Commun (Camb) 2023; 59:2755-2758. [PMID: 36779358 DOI: 10.1039/d2cc07005g] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/14/2023]
Abstract
An oxoiron(IV) cation radical is generated upon two-electron oxidation of an iron(III) complex bearing an electron-rich methoxy substituted bTAML framework and thoroughly characterized via multiple spectroscopic techniques and density functional theory (DFT). Reactivity studies demonstrate faster rates for oxidation of strong aliphatic sp3 C-H bonds than for its corresponding oxoiron(V) valence tautomer.
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Affiliation(s)
- Sandipan Jana
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West Bengal 741246, India.
| | - Santanu Pattanayak
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West Bengal 741246, India.
| | - Soumadip Das
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West Bengal 741246, India.
| | - Munmun Ghosh
- Department of Chemistry, Ashoka University, Rajiv Gandhi Education City, Sonepat, Haryana 131029, India.
| | - Lucia Velasco
- Instituto de Ciencia de Materiales de Madrid, Consejo Superior de Investigaciones Científicas, Sor Juana Inés de la Cruz, 3, 28049, Madrid, Spain.
| | - Dooshaye Moonshiram
- Instituto de Ciencia de Materiales de Madrid, Consejo Superior de Investigaciones Científicas, Sor Juana Inés de la Cruz, 3, 28049, Madrid, Spain.
| | - Sayam Sen Gupta
- Department of Chemical Sciences, Indian Institute of Science Education and Research Kolkata, Mohanpur, West Bengal 741246, India.
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35
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Gable JA, Poulos TL, Follmer AH. Cooperative Substrate Binding Controls Catalysis in Bacterial Cytochrome P450terp (CYP108A1). J Am Chem Soc 2023; 145:10.1021/jacs.2c12388. [PMID: 36779970 PMCID: PMC10576961 DOI: 10.1021/jacs.2c12388] [Citation(s) in RCA: 6] [Impact Index Per Article: 3.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 02/14/2023]
Abstract
Despite being one of the most well-studied aspects of cytochrome P450 chemistry, important questions remain regarding the nature and ubiquity of allosteric regulation of catalysis. The crystal structure of a bacterial P450, P450terp, in the presence of substrate reveals two binding sites, one above the heme in position for regioselective hydroxylation and another in the substrate access channel. Unlike many bacterial P450s, P450terp does not exhibit an open to closed conformational change when substrate binds; instead, P450terp uses the second substrate molecule to hold the first substrate molecule in position for catalysis. Spectral titrations clearly show that substrate binding to P450terp is cooperative with a Hill coefficient of 1.4 and is supported by isothermal titration calorimetry. The importance of the allosteric site was explored by a series of mutations that weaken the second site and that help hold the first substrate in position for proper catalysis. We further measured the coupling efficiency of both the wild-type (WT) enzyme and the mutant enzymes. While the WT enzyme exhibits 97% efficiency, each of the variants showed lower catalytic efficiency. Additionally, the variants show decreased spin shifts upon binding of substrate. These results are the first clear example of positive homotropic allostery in a class 1 bacterial P450 with its natural substrate. Combined with our recent results from P450cam showing complex substrate allostery and conformational dynamics, our present study with P450terp indicates that bacterial P450s may not be as simple as once thought and share complex substrate binding properties usually associated with only mammalian P450s.
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Affiliation(s)
- Jessica A Gable
- Departments of Chemistry, University of California, Irvine, Irvine, California 92697-3900, United States
| | - Thomas L Poulos
- Departments of Molecular Biology & Biochemistry, University of California, Irvine, Irvine, California 92697-3900, United States
- Departments of Pharmaceutical Sciences, University of California, Irvine, Irvine, California 92697-3900, United States
- Departments of Chemistry, University of California, Irvine, Irvine, California 92697-3900, United States
| | - Alec H Follmer
- Departments of Chemistry, University of California, Irvine, Irvine, California 92697-3900, United States
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36
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Shi CY, He DD, Wang BS, Zhang Q, Tian H, Qu DH. A Dynamic Supramolecular H-bonding Network with Orthogonally Tunable Clusteroluminescence. Angew Chem Int Ed Engl 2023; 62:e202214422. [PMID: 36378119 DOI: 10.1002/anie.202214422] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Received: 09/30/2022] [Revised: 11/07/2022] [Accepted: 11/14/2022] [Indexed: 11/16/2022]
Abstract
Enabling dynamically tunable emissive systems offers opportunities for constructing smart materials. Clusteroluminescence, as unconventional luminescence, has attracted increasing attention in both fundamental and applied sciences. Herein, we report a supramolecular poly(disulfides) network with tunable clusteroluminescence. The reticular H-bonds synergize the rigidity and mobility of dynamic networks, and endow the resulting materials with mechanical adaptivity and robustness, simultaneously enabling efficient clusteroluminescence and phosphorescence at 77 K. Orthogonally tunable luminescence are achieved in two manners, i.e., slow backbone disulfide exchange and fast side-chain metal coordination. Further exploration of the reprocessability and chemical closed-loop recycling of intrinsic dynamic networks for sustainable materials is feasible. We foresee that the synergistic strategy of dynamic chemistry offers a novel pathway and potential opportunities for smart emissive materials.
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Affiliation(s)
- Chen-Yu Shi
- Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Institute of Fine Chemicals, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, China
| | - Dan-Dan He
- Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Institute of Fine Chemicals, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, China
| | - Bang-Sen Wang
- Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Institute of Fine Chemicals, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, China
| | - Qi Zhang
- Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Institute of Fine Chemicals, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, China
| | - He Tian
- Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Institute of Fine Chemicals, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, China
| | - Da-Hui Qu
- Key Laboratory for Advanced Materials and Joint International Research Laboratory of Precision Chemistry and Molecular Engineering, Feringa Nobel Prize Scientist Joint Research Center, Institute of Fine Chemicals, Frontiers Science Center for Materiobiology and Dynamic Chemistry, School of Chemistry and Molecular Engineering, East China University of Science and Technology, 130 Meilong Road, Shanghai, 200237, China
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37
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Ansari M, Rajaraman G. Comparative oxidative ability of mononuclear and dinuclear high-valent iron-oxo species towards the activation of methane: does the axial/bridge atom modulate the reactivity? Dalton Trans 2023; 52:308-325. [PMID: 36504243 DOI: 10.1039/d2dt02559k] [Citation(s) in RCA: 3] [Impact Index Per Article: 1.5] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/16/2022]
Abstract
Over the years, mononuclear FeIVO species have been extensively studied, but the presence of dinuclear FeIVO species in soluble methane monooxygenase (sMMO) has inspired the development of biomimic models that could activate inert substrates such as methane. There are some successful attempts; particularly the [(Por)(m-CBA) FeIV(μ-N)FeIV(O)(Por˙+)]- species has been reported to activate methane and yield decent catalytic turnover numbers and therefore regarded as the closest to the sMMO enzyme functional model, as no mononuclear FeIVO analogues could achieve this feat. In this work, we have studied a series of mono and dinuclear models using DFT and ab initio DLPNO-CCSD(T) calculations to probe the importance of nuclearity in enhancing the reactivity. We have probed the catalytic activities of four complexes: [(HO)FeIV(O)(Por)]- (1), [(HO)FeIV(O)(Por˙+)] (2), μ-oxo dinuclear iron species [(Por)(m-CBA)FeIV(μ-O)FeIV(O) (Por˙+)]- (3) and N-bridged dinuclear iron species [(Por)(m-CBA)FeIV(μ-N)FeIV(O)(Por˙+)]- (4) towards the activation of methane. Additionally, calculations were performed on the mononuclear models [(X)FeIV(O)(Por˙+)]n {X = N 4a (n = -2), NH 4b (n = -1) and NH24c (n = 0)} to understand the role of nuclearity in the reactivity. DFT calculations performed on species 1-4 suggest an interesting variation among them, with species 1-3 possessing an intermediate spin (S = 1) as a ground state and species 4 possessing a high-spin (S = 2) as a ground state. Furthermore, the two FeIV centres in species 3 and 4 are antiferromagnetically coupled, yielding a singlet state with a distinct difference in their electronic structure. On the other hand, species 2 exhibits a ferromagnetic coupling between the FeIV and the Por˙+ moiety. Our calculations suggest that the higher barriers for the C-H bond activation of methane and the rebound step for species 1 and 3 are very high in energy, rendering them unreactive towards methane, while species 2 and 4 have lower barriers, suggesting their reactivity towards methane. Studies on the system reveal that model 4a has multiple FeN bonds facilitating greater reactivity, whereas the other two models have longer Fe-N bonds and less radical character with steeper barriers. Strong electronic cooperativity is found to be facilitated by the bridging nitride atom, and this cooperativity is suppressed by substituents such as oxygen, rendering them inactive. Thus, our study unravels that apart from enhancing the nuclearity, bridging atoms that facilitate strong cooperation between the metals are required to activate very inert substrates such as methane, and our results are broadly in agreement with earlier experimental findings.
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Affiliation(s)
- Mursaleem Ansari
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India.
| | - Gopalan Rajaraman
- Department of Chemistry, Indian Institute of Technology Bombay, Mumbai 400076, India.
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38
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Jia YJ, Li QS. Ferroptosis: a critical player and potential therapeutic target in traumatic brain injury and spinal cord injury. Neural Regen Res 2023; 18:506-512. [DOI: 10.4103/1673-5374.350187] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/04/2022] Open
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39
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Paul A, Sengupta A, Yadav S. Organophotoredox-Catalyzed Cross-Dehydrogenative Sulfonamidation of Indoles and Other Heterocycles. J Org Chem 2022. [DOI: 10.1021/acs.joc.2c02022] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 12/23/2022]
Affiliation(s)
- Aditya Paul
- Department of Chemistry and Chemical Biology, Indian Institute of Technology (ISM), Dhanbad, Jharkhand 826004, India
| | - Arunava Sengupta
- Department of Chemistry and Chemical Biology, Indian Institute of Technology (ISM), Dhanbad, Jharkhand 826004, India
| | - Somnath Yadav
- Department of Chemistry and Chemical Biology, Indian Institute of Technology (ISM), Dhanbad, Jharkhand 826004, India
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40
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Field MJ, Oyala PH, Green MT. 17O Electron Nuclear Double Resonance Analysis of Compound I: Inverse Correlation between Oxygen Spin Population and Electron Donation. J Am Chem Soc 2022; 144:19272-19283. [PMID: 36240444 PMCID: PMC11891864 DOI: 10.1021/jacs.2c05459] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Abstract] [MESH Headings] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/28/2022]
Abstract
Although the activation of inert C-H bonds by metal-oxo complexes has been widely studied, important questions remain, particularly regarding the role of oxygen spin population (i.e., unpaired electrons on the oxo ligand) in facilitating C-H bond cleavage. In order to shed light on this issue, we have utilized 17O electron nuclear double resonance spectroscopy to measure the oxygen spin populations of three compound I intermediates in heme enzymes with different reactivities toward C-H bonds: chloroperoxidase, cytochrome P450, and a selenolate (selenocysteinyl)-ligated cytochrome P450. The experimental data suggest an inverse correlation between oxygen spin population and electron donation from the axial ligand. We have explored the implications of this result using a Hückel-type molecular orbital model and constrained density functional theory calculations. These investigations have allowed us to examine the relationship between oxygen spin population, oxygen charge, electron donation from the axial ligand, and reactivity.
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Affiliation(s)
- Mackenzie J Field
- Department of Chemistry and Department of Molecular Biology and Biochemistry, University of California, Irvine, California92697, United States
| | - Paul H Oyala
- Division of Chemistry and Chemical Engineering, California Institute of Technology, Pasadena, California91125, United States
| | - Michael T Green
- Department of Chemistry and Department of Molecular Biology and Biochemistry, University of California, Irvine, California92697, United States
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41
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Lučić M, Wilson MT, Tosha T, Sugimoto H, Shilova A, Axford D, Owen RL, Hough MA, Worrall JAR. Serial Femtosecond Crystallography Reveals the Role of Water in the One- or Two-Electron Redox Chemistry of Compound I in the Catalytic Cycle of the B-Type Dye-Decolorizing Peroxidase DtpB. ACS Catal 2022; 12:13349-13359. [PMID: 36366763 PMCID: PMC9638988 DOI: 10.1021/acscatal.2c03754] [Citation(s) in RCA: 7] [Impact Index Per Article: 2.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 07/31/2022] [Revised: 10/05/2022] [Indexed: 11/30/2022]
Abstract
![]()
Controlling the reactivity
of high-valent Fe(IV)–O
catalytic
intermediates, Compounds I and II, generated in heme enzymes upon
reaction with dioxygen or hydrogen peroxide, is important for function.
It has been hypothesized that the presence (wet) or absence (dry)
of distal heme pocket water molecules can influence whether Compound
I undergoes sequential one-electron additions or a concerted two-electron
reduction. To test this hypothesis, we investigate the role of water
in the heme distal pocket of a dye-decolorizing peroxidase utilizing
a combination of serial femtosecond crystallography and rapid kinetic
studies. In a dry distal heme site, Compound I reduction proceeds
through a mechanism in which Compound II concentration is low. This
reaction shows a strong deuterium isotope effect, indicating that
reduction is coupled to proton uptake. The resulting protonated Compound
II (Fe(IV)–OH) rapidly reduces to the ferric state, giving
the appearance of a two-electron transfer process. In a wet site,
reduction of Compound I is faster, has no deuterium effect, and yields
highly populated Compound II, which is subsequently reduced to the
ferric form. This work provides a definitive experimental test of
the hypothesis advanced in the literature that relates sequential
or concerted electron transfer to Compound I in wet or dry distal
heme sites.
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Affiliation(s)
- Marina Lučić
- School of Life Sciences, University of Essex, Wivenhoe Park,
Essex, ColchesterCO4 3SQ, U.K
| | - Michael T. Wilson
- School of Life Sciences, University of Essex, Wivenhoe Park,
Essex, ColchesterCO4 3SQ, U.K
| | - Takehiko Tosha
- RIKEN, Spring-8 Center, 1-1-1 Kouto, Sayo, Hyogo679-5148Japan
| | | | - Anastasya Shilova
- Diamond Light Source, Harwell Science and Innovation Campus, Oxfordshire, DidcotOX11 0DE, U.K
| | - Danny Axford
- Diamond Light Source, Harwell Science and Innovation Campus, Oxfordshire, DidcotOX11 0DE, U.K
| | - Robin L. Owen
- Diamond Light Source, Harwell Science and Innovation Campus, Oxfordshire, DidcotOX11 0DE, U.K
| | - Michael A. Hough
- School of Life Sciences, University of Essex, Wivenhoe Park,
Essex, ColchesterCO4 3SQ, U.K
- Diamond Light Source, Harwell Science and Innovation Campus, Oxfordshire, DidcotOX11 0DE, U.K
| | - Jonathan A. R. Worrall
- School of Life Sciences, University of Essex, Wivenhoe Park,
Essex, ColchesterCO4 3SQ, U.K
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42
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Awasthi A, Leach IF, Engbers S, Kumar R, Eerlapally R, Gupta S, Klein JEMN, Draksharapu A. Formation and Reactivity of a Fleeting Ni III Bisphenoxyl Diradical Species. Angew Chem Int Ed Engl 2022; 61:e202211345. [PMID: 35978531 PMCID: PMC9826141 DOI: 10.1002/anie.202211345] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Key Words] [Track Full Text] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 08/04/2022] [Indexed: 01/11/2023]
Abstract
Cytochrome P450s and Galactose Oxidases exploit redox active ligands to form reactive high valent intermediates for oxidation reactions. This strategy works well for the late 3d metals where accessing high valent states is rather challenging. Herein, we report the oxidation of NiII (salen) (salen=N,N'-bis(3,5-di-tert-butyl-salicylidene)-1,2-cyclohexane-(1R,2R)-diamine) with mCPBA (meta-chloroperoxybenzoic acid) to form a fleeting NiIII bisphenoxyl diradical species, in CH3 CN and CH2 Cl2 at -40 °C. Electrochemical and spectroscopic analyses using UV/Vis, EPR, and resonance Raman spectroscopies revealed oxidation events both on the ligand and the metal centre to yield a NiIII bisphenoxyl diradical species. DFT calculations found the electronic structure of the ligand and the d-configuration of the metal center to be consistent with a NiIII bisphenoxyl diradical species. This three electron oxidized species can perform hydrogen atom abstraction and oxygen atom transfer reactions.
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Affiliation(s)
- Ayushi Awasthi
- Southern Laboratories-208 ADepartment of ChemistryIndian Institute of Technology KanpurKanpur208016India
| | - Isaac F. Leach
- Molecular Inorganic ChemistryStratingh Institute for ChemistryUniversity of Groningen9747 AGGroningenThe Netherlands
| | - Silène Engbers
- Molecular Inorganic ChemistryStratingh Institute for ChemistryUniversity of Groningen9747 AGGroningenThe Netherlands
| | - Rakesh Kumar
- Southern Laboratories-208 ADepartment of ChemistryIndian Institute of Technology KanpurKanpur208016India
| | - Raju Eerlapally
- Southern Laboratories-208 ADepartment of ChemistryIndian Institute of Technology KanpurKanpur208016India
| | - Sikha Gupta
- Southern Laboratories-208 ADepartment of ChemistryIndian Institute of Technology KanpurKanpur208016India
| | - Johannes E. M. N. Klein
- Molecular Inorganic ChemistryStratingh Institute for ChemistryUniversity of Groningen9747 AGGroningenThe Netherlands
| | - Apparao Draksharapu
- Southern Laboratories-208 ADepartment of ChemistryIndian Institute of Technology KanpurKanpur208016India
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43
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Awasthi A, Leach IF, Engbers S, Kumar R, Eerlapally R, Gupta S, Klein JEMN, Draksharapu A. Formation and Reactivity of a Fleeting Ni(III) Bisphenoxyl Diradical Species. Angew Chem Int Ed Engl 2022. [DOI: 10.1002/ange.202211345] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/06/2022]
Affiliation(s)
| | - Isaac F. Leach
- University of Groningen Zernike Institute for Advanced Materials: Rijksuniversiteit Groningen Zernike Institute for Advanced Materials Stratingh Institute for Chemistry NETHERLANDS
| | - Silène Engbers
- University of Groningen Zernike Institute for Advanced Materials: Rijksuniversiteit Groningen Zernike Institute for Advanced Materials Stratingh Institute for Chemistry NETHERLANDS
| | - Rakesh Kumar
- Indian Institute of Technology Kanpur Chemistry INDIA
| | | | - Sikha Gupta
- Indian Institute of Technology Kanpur Chemistry INDIA
| | - Johannes E. M. N. Klein
- University of Groningen Zernike Institute for Advanced Materials: Rijksuniversiteit Groningen Zernike Institute for Advanced Materials Stratingh Institute for Chemistry NETHERLANDS
| | - Apparao Draksharapu
- IITK: Indian Institute of Technology Kanpur Chemistry SL-208A 208016 Kanpur INDIA
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44
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Kesharwani N, Chaudhary N, Haldar C. Synthesis and characterization of Merrifield resin and graphene oxide supported air stable oxidovanadium(IV) radical complexes for the catalytic oxidation of light aliphatic alcohols. Catal Today 2022. [DOI: 10.1016/j.cattod.2021.06.005] [Citation(s) in RCA: 0] [Impact Index Per Article: 0] [Reference Citation Analysis] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/02/2022]
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45
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Abstract
The Gouterman four-orbital model conceptualizes porphyrin UV-visible spectra as dominated by four frontier molecular orbitals-two nearly degenerate HOMOs and two exactly degenerate LUMOS under D 4h symmetry. These are well separated from all the other molecular orbitals, and normal spectra involve transitions among these MOs. Unusual spectra occur when additional orbitals appear in this energy range, typically as a consequence of the central coordinated atom. For example, metals with empty d orbitals in a suitable energy range may lead to charge transfer from porphyrin (ligand) to metal, that is, so-called LMCT transitions. Metals with filled p or d orbitals may lead to charge transfer from metal to porphyrin, MLCT transitions. These cases lead to additional peaks and/or significant redshifts in the spectra and were classified as hyperporphyrins by Gouterman. Cases in which spectra are blueshifted were classified as hypsoporphyrins; they are common for relatively electronegative late transition metal porphyrins. Many of the same principles apply to porphyrin analogues, especially corroles. In this Perspective, we focus on two newer classes of hyperporphyrins: one reflecting substituent effects in protonated or deprotonated free-base tetraphenyporphyrins and the other reflecting "noninnocent" interactions between central metal ions and corroles. Hyperporphyrin effects on spectra can be dramatic, yet they can be generated by relatively simple changes and subtle structural variations, such as acid-base reactions or the selection of a central metal ion. These concepts suggest strategies for engineering porphyrin or porphyrinoid dyes for specific applications, especially those requiring far-red or near-infrared absorption or emission.
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Affiliation(s)
- Carl C. Wamser
- Department
of Chemistry, Portland State University, Portland, Oregon 97207-0751, United States
| | - Abhik Ghosh
- Department
of Chemistry and Arctic Center for Sustainable Energy, UiT − The Arctic University of Norway, N-9037 Tromsø, Norway
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46
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Bian KJ, Nemoto D, Kao SC, He Y, Li Y, Wang XS, West JG. Modular Difunctionalization of Unactivated Alkenes through Bio-Inspired Radical Ligand Transfer Catalysis. J Am Chem Soc 2022; 144:11810-11821. [PMID: 35729791 DOI: 10.1021/jacs.2c04188] [Citation(s) in RCA: 26] [Impact Index Per Article: 8.7] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/30/2022]
Abstract
Development of visible light-mediated atom transfer radical addition of haloalkanes onto unsaturated hydrocarbons has seen rapid growth in recent years. However, due to its radical chain propagation mechanism, diverse functionality other than the pre-existing (pseudo-)halide on the alkyl halide source cannot be incorporated into target molecules in a one-step, economic fashion. Inspired by the prominent reactivities shown by cytochrome P450 hydroxylase and non-heme iron-dependent oxygenases, we herein report the first modular, dual catalytic difunctionalization of unactivated alkenes via manganese-catalyzed radical ligand transfer (RLT). This RLT elementary step involves a coordinated nucleophile rebounding to a carbon-centered radical to form a new C-X bond in analogy to the radical rebound step in metalloenzymes. The protocol leverages the synergetic cooperation of both a photocatalyst and earth-abundant manganese complex to deliver two radical species in succession to minimally functionalized alkenes, enabling modular diversification of the radical intermediate by a high-valent manganese species capable of delivering various external nucleophiles. A broad scope (97 examples, including drugs/natural product motifs), mild conditions, and excellent chemoselectivity were shown for a variety of substrates and fluoroalkyl fragments. Mechanistic and kinetics studies provide insights into the radical nature of the dual catalytic transformation and support radical ligand transfer (RLT) as a new strategy to deliver diverse functionality selectively to carbon-centered radicals.
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Affiliation(s)
- Kang-Jie Bian
- Department of Chemistry, Rice University, 6500 Main St, Houston, Texas 77030, United States
| | - David Nemoto
- Department of Chemistry, Rice University, 6500 Main St, Houston, Texas 77030, United States
| | - Shih-Chieh Kao
- Department of Chemistry, Rice University, 6500 Main St, Houston, Texas 77030, United States
| | - Yan He
- Hefei National Laboratory for Physical Sciences at the Microscale and Department of Chemistry, University of Science and Technology of China, 96 Jinzhai Road, Hefei, Anhui 230026, China
| | - Yan Li
- Hefei National Laboratory for Physical Sciences at the Microscale and Department of Chemistry, University of Science and Technology of China, 96 Jinzhai Road, Hefei, Anhui 230026, China
| | - Xi-Sheng Wang
- Hefei National Laboratory for Physical Sciences at the Microscale and Department of Chemistry, University of Science and Technology of China, 96 Jinzhai Road, Hefei, Anhui 230026, China
| | - Julian G West
- Department of Chemistry, Rice University, 6500 Main St, Houston, Texas 77030, United States
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47
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Dedushko MA, Greiner MB, Downing AN, Coggins M, Kovacs JA. Electronic Structure and Reactivity of Dioxygen-Derived Aliphatic Thiolate-Ligated Fe-Peroxo and Fe(IV) Oxo Compounds. J Am Chem Soc 2022; 144:8515-8528. [PMID: 35522532 DOI: 10.1021/jacs.1c07656] [Citation(s) in RCA: 1] [Impact Index Per Article: 0.3] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/03/2023]
Abstract
Herein, we examine the electronic and geometric structural properties of O2-derived aliphatic thiolate-ligated Fe-peroxo, Fe-hydroxo, and Fe(IV) oxo compounds. The latter cleaves strong C-H bonds (96 kcal mol-1) on par with the valine C-H bond cleaved by isopencillin N synthase (IPNS). Stopped-flow kinetics studies indicate that the barrier to O2 binding to [FeII(SMe2N4(tren))]+ (3) is extremely low (Ea = 36(2) kJ mol-1), as theoretically predicted for IPNS. Dioxygen binding to 3 is shown to be reversible, and a superoxo intermediate, [FeIII(SMe2N4(tren))(O2)]+ (6), forms in the first 25 ms of the reaction at -40 °C prior to the rate-determining (Ea = 46(2) kJ mol-1) formation of peroxo-bridged [(SMe2N4(tren))Fe(III)]2(μ-O2)2+ (7). A log(kobs) vs log([Fe]) plot for the formation of 7 is consistent with the second-order dependence on iron, and H2O2 assays are consistent with a 2:1 ratio of Fe/H2O2. Peroxo 7 is shown to convert to ferric-hydroxo [FeIII(SMe2N(tren))(OH)]+ (9, g⊥ = 2.24, g∥ = 1.96), the identity of which was determined via its independent synthesis. Rates of the conversion 7 → 9 are shown to be dependent on the X-H bond strength of the H-atom donor, with a kH/kD = 4 when CD3OD is used in place of CH3OH as a solvent. A crystallographically characterized cis thiolate-ligated high-valent iron oxo, [FeIV(O)(SMe2N4(tren))]+ (11), is shown to form en route to hydroxo 9. Electronic structure calculations were shown to be consistent with 11 being an S = 1 Fe(IV)═O with an unusually high νFe-O stretching frequency at 918 cm-1 in line with the extremely short Fe-O bond (1.603(7) Å).
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Affiliation(s)
- Maksym A Dedushko
- Department of Chemistry, University of Washington, Campus Box 351700, Seattle, Washington 98195-1700, United States
| | - Maria B Greiner
- Department of Chemistry, University of Washington, Campus Box 351700, Seattle, Washington 98195-1700, United States
| | - Alexandra N Downing
- Department of Chemistry, University of Washington, Campus Box 351700, Seattle, Washington 98195-1700, United States
| | - Michael Coggins
- Department of Chemistry, University of Washington, Campus Box 351700, Seattle, Washington 98195-1700, United States
| | - Julie A Kovacs
- Department of Chemistry, University of Washington, Campus Box 351700, Seattle, Washington 98195-1700, United States
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48
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Greule A, Izoré T, Machell D, Hansen MH, Schoppet M, De Voss JJ, Charkoudian LK, Schittenhelm RB, Harmer JR, Cryle MJ. The Cytochrome P450 OxyA from the Kistamicin Biosynthesis Cyclization Cascade is Highly Sensitive to Oxidative Damage. Front Chem 2022; 10:868240. [PMID: 35464232 PMCID: PMC9023744 DOI: 10.3389/fchem.2022.868240] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Download PDF] [Figures] [Journal Information] [Subscribe] [Scholar Register] [Received: 02/02/2022] [Accepted: 03/01/2022] [Indexed: 11/17/2022] Open
Abstract
Cytochrome P450 enzymes (P450s) are a superfamily of monooxygenases that utilize a cysteine thiolate–ligated heme moiety to perform a wide range of demanding oxidative transformations. Given the oxidative power of the active intermediate formed within P450s during their active cycle, it is remarkable that these enzymes can avoid auto-oxidation and retain the axial cysteine ligand in the deprotonated—and thus highly acidic—thiolate form. While little is known about the process of heme incorporation during P450 folding, there is an overwhelming preference for one heme orientation within the P450 active site. Indeed, very few structures to date contain an alternate heme orientation, of which two are OxyA homologs from glycopeptide antibiotic (GPA) biosynthesis. Given the apparent preference for the unusual heme orientation shown by OxyA enzymes, we investigated the OxyA homolog from kistamicin biosynthesis (OxyAkis), which is an atypical GPA. We determined that OxyAkis is highly sensitive to oxidative damage by peroxide, with both UV and EPR measurements showing rapid bleaching of the heme signal. We determined the structure of OxyAkis and found a mixed population of heme orientations present in this enzyme. Our analysis further revealed the possible modification of the heme moiety, which was only present in samples where the alternate heme orientation was present in the protein. These results suggest that the typical heme orientation in cytochrome P450s can help prevent potential damage to the heme—and hence deactivation of the enzyme—during P450 catalysis. It also suggests that some P450 enzymes involved in GPA biosynthesis may be especially prone to oxidative damage due to the heme orientation found in their active sites.
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Affiliation(s)
- Anja Greule
- Department of Biochemistry and Molecular Biology, The Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia
- EMBL Australia, Monash University, Clayton, VIC, Australia
| | - Thierry Izoré
- Department of Biochemistry and Molecular Biology, The Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia
- EMBL Australia, Monash University, Clayton, VIC, Australia
| | - Daniel Machell
- Department of Biochemistry and Molecular Biology, The Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia
- EMBL Australia, Monash University, Clayton, VIC, Australia
- ARC Centre of Excellence for Innovations in Peptide and Protein Science, Clayton, VIC, Australia
| | - Mathias H. Hansen
- Department of Biochemistry and Molecular Biology, The Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia
- EMBL Australia, Monash University, Clayton, VIC, Australia
- ARC Centre of Excellence for Innovations in Peptide and Protein Science, Clayton, VIC, Australia
| | - Melanie Schoppet
- Department of Biochemistry and Molecular Biology, The Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia
- EMBL Australia, Monash University, Clayton, VIC, Australia
| | - James J. De Voss
- Department of Chemistry, The University of Queensland, St Lucia, QLD, Australia
| | | | - Ralf B. Schittenhelm
- Department of Biochemistry and Molecular Biology, The Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia
- Monash Proteomics and Metabolomics Facility, Monash University, Clayton, VIC, Australia
| | - Jeffrey R. Harmer
- Centre for Advanced Imaging, The University of Queensland, St Lucia, QLD, Australia
| | - Max J. Cryle
- Department of Biochemistry and Molecular Biology, The Monash Biomedicine Discovery Institute, Monash University, Clayton, VIC, Australia
- EMBL Australia, Monash University, Clayton, VIC, Australia
- ARC Centre of Excellence for Innovations in Peptide and Protein Science, Clayton, VIC, Australia
- *Correspondence: Max J. Cryle,
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Comba P, Nunn G, Scherz F, Walton PH. Intermediate-spin iron(IV)-oxido species with record reactivity. Faraday Discuss 2022; 234:232-244. [PMID: 35156976 DOI: 10.1039/d1fd00073j] [Citation(s) in RCA: 6] [Impact Index Per Article: 2.0] [Reference Citation Analysis] [Abstract] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 11/21/2022]
Abstract
The nonheme iron(IV)-oxido complex trans-N3-[(L1)FeIVO(Cl)]+, where L1 is a derivative of the tetradentate bispidine 2,4-di(pyridine-2-yl)-3,7-diazabicyclo[3.3.1]nonane-1-one, has an S = 1 electronic ground state and is the most reactive nonheme iron model system known so far, of a similar order of reactivity as nonheme iron enzymes (C-H abstraction of cyclohexane, -90 °C (propionitrile), t1/2 = 3.5 s). The reaction with cyclohexane selectively leads to chlorocyclohexane, but "cage escape" at the [(L1)FeIII(OH)(Cl)]+/cyclohexyl radical intermediate lowers the productivity. Ligand field theory is used herein to analyze the d-d transitions of [(L1)FeIVO(X)]n+ (X = Cl-, Br-, MeCN) in comparison with the thoroughly characterized ferryl complex of tetramethylcyclam (TMC = L2; [(L2)FeIVO(MeCN)]2+). The ligand field parameters and d-d transition energies are shown to provide important information on the triplet-quintet gap and its correlation with oxidation reactivity.
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Affiliation(s)
- Peter Comba
- Universität Heidelberg, Anorganisch-Chemisches Institut, INF 270, D-69120 Heidelberg, Germany. .,Universität Heidelberg, Interdisziplinäres Zentrum für Wissenschaftliches Rechnen (IWR), Germany
| | - George Nunn
- Department of Chemistry, University of York, Heslington, YORK, YO10 5DD, UK
| | - Frederik Scherz
- Universität Heidelberg, Anorganisch-Chemisches Institut, INF 270, D-69120 Heidelberg, Germany.
| | - Paul H Walton
- Department of Chemistry, University of York, Heslington, YORK, YO10 5DD, UK
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50
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Bouchey CJ, Tolman WB. Involvement of a Formally Copper(III) Nitrite Complex in Proton-Coupled Electron Transfer and Nitration of Phenols. Inorg Chem 2022; 61:2662-2668. [PMID: 35078314 PMCID: PMC9835712 DOI: 10.1021/acs.inorgchem.1c03790] [Citation(s) in RCA: 8] [Impact Index Per Article: 2.7] [Reference Citation Analysis] [Abstract] [Grants] [Track Full Text] [Journal Information] [Subscribe] [Scholar Register] [Indexed: 01/16/2023]
Abstract
A unique high-valent copper nitrite species, LCuNO2, was accessed via the reversible one-electron oxidation of [M][LCuNO2] (M = NBu4+ or PPN+). The complex LCuNO2 reacts with 2,4,6-tri-tert-butylphenol via a typical proton-coupled electron transfer (PCET) to yield LCuTHF and the 2,4,6-tri-tert-butylphenoxyl radical. The reaction between LCuNO2 and 2,4-di-tert-butylphenol was more complicated. It yielded two products: the coupled bisphenol product expected from a H-atom abstraction and 2,4-di-tert-butyl-6-nitrophenol, the product of an unusual anaerobic nitration. Various mechanisms for the latter transformation were considered.
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Affiliation(s)
- Caitlin J Bouchey
- Department of Chemistry, Washington University in St. Louis, One Brookings Drive, Campus Box 1134, St. Louis, Missouri 63130, United States
- Department of Chemistry, University of Minnesota, 207 Pleasant Street SE, Minneapolis, Minnesota 55455, United States
| | - William B Tolman
- Department of Chemistry, Washington University in St. Louis, One Brookings Drive, Campus Box 1134, St. Louis, Missouri 63130, United States
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