Influence of Productivity on the Stability of Real and Model Ecosystems

Eutrophication triggered changes in network structure and fluxes of the Comacchio Lagoon (Italy)

Coastal lagoons, which cover about 13% of coastline, are among the most productive ecosystems worldwide. However, they are subject to significant stressors, both natural and anthropogenic, which can alter ecosystem services and functioning and food web structure. In the Comacchio Lagoon (Northern Italy), eutrophication, among other minor factors, transformed the ecosystem in the early 1980s. Here, we compiled available data for the lagoon into trophic networks (pre- and post-transformation), analyzed the ecosystem using local and global network analysis, and computed trophic fluxes of the two periods. For comparability, the networks of two periods (i.e., pre- and post- transformation) were aggregated into food webs with 23 nodes. We found differences in the trophic networks before and after eutrophication, resulting in some decrease in complexity, increase of flow diversity, and an overall shortening of the food chain. A crucial aspect of this change is the disappearance of submerged vegetation in the lagoon and the increased importance of cyanobacteria in the post-eutrophication period. We provide an approach to better understand ecosystem changes after severe disturbances which can be extended to biodiversity conservation and for the management of coastal resources in general.

Cd indirectly affects the structure and function of plankton ecosystems by affecting trophic interactions at environmental concentrations

The toxic effects of potentially toxic elements have been observed at low concentrations; however, many studies have focused on single-species toxicity testing. Consequently, it is imperative to quantify toxicity at the community level at environmental concentrations. A microcosm approach was employed in conjunction with the Lotka-Volterra model to ascertain the impact of environmentally relevant concentrations of cadmium (Cd) on plankton abundance, community function, and stability. The results demonstrated that Cd led to a reduction in the abundance of Daphnia magna, yet unexpectedly resulted in an increase in the abundance of Brachionus calyciflorus and Paramecium caudatum. Additionally, Cd was observed to impede primary productivity, metabolic capacity and the stability of the planktonic community. Further model analyses revealed that the environmental concentration of Cd directly reduced intrinsic growth rates and intraspecific interactions. In particular, we found that the predation effects of Daphnia magna on Brachionus calyciflorus were significantly weakened. The findings of this study offer quantitative evidence that Cd exposure exerts an indirect influence on the structure and functioning of plankton ecosystems, mediated by alterations in trophic interactions. The findings indicate that the impact of environmental concentrations of potentially toxic elements may be underestimated in single-species experiments.

Reservoir ecosystems support large pools of fish biomass

Humans increasingly dominate Earth's natural freshwater ecosystems, but biomass production of modified ecosystems is rarely studied. We estimate potential fish total standing stock in USA reservoirs is 3.4 billion (B) kg, and approximate annual secondary production is 4.5 B kg y-1. We also observe varied and non-linear trends in reservoir fish biomass over time, thus previous assertions that reservoir fisheries decline over time are not universal. Reservoirs are globally relevant pools of freshwater fisheries, in part due to their immense limnetic footprint and spatial extent. This study further shows that reservoir ecosystems play major roles in food security and fisheries conservation. We encourage additional effort be expended to effectively manage reservoir environments for the good of humanity, biodiversity, and fish conservation.

Changes in vertical and horizontal diversities mediated by the size structure of introduced fish collectively shape food-web stability

Species introductions can alter local food-web structure by changing the vertical or horizontal diversity within communities, largely driven by their body size distributions. Increasing vertical and horizontal diversities is predicted to have opposing effects on stability. However, their interactive effects remain largely overlooked. We investigated the independent and collective effects of vertical and horizontal diversities on food-web stability in alpine lakes stocked with variable body size distributions of introduced fish species. Introduced predators destabilize food-webs by increasing vertical diversity through food chain lengthening. Alternatively, increasing horizontal diversity results in more stable food-web topologies. A non-linear interaction between vertical and horizontal diversities suggests that increasing vertical diversity is most destabilizing when horizontal diversity is low. Our findings suggest that the size structure of introduced predators drives their impacts on stability by modifying the structure of food-webs, and highlights the interactive effects of vertical and horizontal diversities on stability.

Responses of bacterial community and N-cycling functions stability to different wetting-drying alternation frequencies in a riparian zone

Wetting-drying alternation (WD) of the soil is one of the key characteristics of riparian zones shaped by dam construction, profoundly impacting the soil microenvironment that determines the bacterial community. Knowledge concerning the stability of bacterial community and N-cycling functions in response to different frequencies of WD remains unclear. In this study, samples were taken from a riparian zone in the Three Gorges Reservoir (TGR) and an incubation experiment was conducted including four treatments: constant flooding (W), varied wetting-drying alternation frequencies (WD1 and WD2), and constant drying (D) (simulating water level of 145 m, 155 m, 165 m, and 175 m in the riparian zone respectively). The results revealed that there was no significant difference in the diversity among the four treatments. Following the WD1 and WD2 treatments, the relative abundances of Proteobacteria increased, while those of Chloroflexi and Acidobacteriota decreased compared to the W treatment. However, the stability of bacterial community was not affected by WD. Relative to the W treatment, the stability of N-cycling functions estimated by resistance, which refers to the ability of functional genes to adapt to changes in the environment, decreased following the WD1 treatment, but showed no significant change following the WD2 treatment. Random forest analysis showed that the resistances of the nirS and hzo genes were core contributors to the stability of N-cycling functions. This study provides a new perspective for investigating the impacts of wetting-drying alternation on soil microbes.

Efficient keystone species identification strategy based on tabu search

As species extinction accelerates globally and biodiversity declines dramatically, identifying keystone species becomes an effective way to conserve biodiversity. In traditional approaches, it is considered that the extinction of species with high centrality poses the greatest threat to secondary extinction. However, the indirect effect, which is equally important as the local and direct effects, is not included. Here, we propose an optimized disintegration strategy model for quantitative food webs and introduced tabu search, a metaheuristic optimization algorithm, to identify keystone species. Topological simulations are used to record secondary extinctions during species removal and secondary extinction areas, as well as to evaluate food web robustness. The effectiveness of the proposed strategy is also validated by comparing it with traditional methods. Results of our experiments demonstrate that our strategy can optimize the effect of food web disintegration and identify the species whose extinction is most destructive to the food web through global search. The algorithm provides an innovative and efficient way for further development of keystone species identification in the ecosystem.

Intensive grassland management disrupts below-ground multi-trophic resource transfer in response to drought

Modification of soil food webs by land management may alter the response of ecosystem processes to climate extremes, but empirical support is limited and the mechanisms involved remain unclear. Here we quantify how grassland management modifies the transfer of recent photosynthates and soil nitrogen through plants and soil food webs during a post-drought period in a controlled field experiment, using in situ ¹³C and ¹⁵N pulse-labelling in intensively and extensively managed fields. We show that intensive management decrease plant carbon (C) capture and its transfer through components of food webs and soil respiration compared to extensive management. We observe a legacy effect of drought on C transfer pathways mainly in intensively managed grasslands, by increasing plant C assimilation and ¹³C released as soil CO₂ efflux but decreasing its transfer to roots, bacteria and Collembola. Our work provides insight into the interactive effects of grassland management and drought on C transfer pathways, and highlights that capture and rapid transfer of photosynthates through multi-trophic networks are key for maintaining grassland resistance to drought.

The coordination of green-brown food webs and their disruption by anthropogenic nutrient inputs

Aim

Our goal was to quantify nitrogen flows and stocks in green-brown food webs in different ecosystems, how they differ across ecosystems and how they respond to nutrient enrichment.

Location

Global.

Time period

Contemporary.

Major taxa studied

Plants, phytoplankton, macroalgae, invertebrates, vertebrates and zooplankton.

Methods

Data from >500 studies were combined to estimate nitrogen stocks and fluxes in green-brown food webs in forests, grasslands, brackish environments, seagrass meadows, lakes and oceans. We compared the stocks, fluxes and metabolic rates of different functional groups within each food web. We also used these estimates to build a dynamical model to test the response of the ecosystems to nutrient enrichment.

Results

We found surprising symmetries between the green and brown channels across ecosystems, in their stocks, fluxes and consumption coefficients and mortality rates. We also found that nitrogen enrichment, either organic or inorganic, can disrupt this balance between the green and brown channels.

Main conclusions

Linking green and brown food webs reveals a previously hidden symmetry between herbivory and detritivory, which appears to be a widespread property of natural ecosystems but can be disrupted by anthropogenic nitrogen additions.

Coupling of green and brown food webs and ecosystem stability

Ecosystems comprise living organisms and organic matter or detritus. In earlier community ecology theories, ecosystem dynamics were normally understood in terms of aboveground, green-world trophic interaction networks, or food webs. Recently, there has been growing interest in the role played in ecosystem dynamics by detritus in underground, brown-world interactions. However, the role of decomposers in the consumption of detritus to produce nutrients in ecosystem dynamics remains unclear. Here, an ecosystem model of trophic food chains, detritus, decomposers, and decomposer predators demonstrated that decomposers play a totally different role than that previously predicted, with regard to their relationship between nutrient cycling and ecosystem stability. The high flux of nutrients due to efficient decomposition by decomposers increases ecosystem stability. However, moderate levels of ecosystem openness (with movement of materials) can either greatly increase or decrease ecosystem stability. Furthermore, the stability of an ecosystem peaks at intermediate openness because open systems are less stable than closed systems. These findings suggest that decomposers and the food-web dynamics of brown-world interactions are crucial for ecosystem stability, and that the properties of decomposition rate and openness are important in predicting changes in ecosystem stability in response to changes in decomposition efficiency driven by climate change.

Biodiversity increases multitrophic energy use efficiency, flow and storage in grasslands

The continuing loss of global biodiversity has raised questions about the risk that species extinctions pose for the functioning of natural ecosystems and the services that they provide for human wellbeing. There is consensus that, on single trophic levels, biodiversity sustains functions; however, to understand the full range of biodiversity effects, a holistic and multitrophic perspective is needed. Here, we apply methods from ecosystem ecology that quantify the structure and dynamics of the trophic network using ecosystem energetics to data from a large grassland biodiversity experiment. We show that higher plant diversity leads to more energy stored, greater energy flow and higher community-energy-use efficiency across the entire trophic network. These effects of biodiversity on energy dynamics were not restricted to only plants but were also expressed by other trophic groups and, to a similar degree, in aboveground and belowground parts of the ecosystem, even though plants are by far the dominating group in the system. The positive effects of biodiversity on one trophic level were not counteracted by the negative effects on adjacent levels. Trophic levels jointly increased the performance of the community, indicating ecosystem-wide multitrophic complementarity, which is potentially an important prerequisite for the provisioning of ecosystem services.

Identifying compartments in ecological networks based on energy channels

It has been confirmed in many food webs that the interactions between species are divided into “compartments,” that is, subgroups of highly interacting taxa with few weak interactions between the subgroups. Many of the current methods for detecting compartments in food webs are borrowed from network theory, which do little to improve our understanding of the mechanisms underpinning them. Therefore, a method based on ecological context is needed. Here, we develop a new method for detecting compartments in food webs based on the reliance of each node on energy derived from basal resources (i.e., producers or decomposers). Additional Monte Carlo simulations were conducted to test the significance of the compartmentalization. Further, we applied a food web dynamics model to test whether the effects of permutation would be retained within a single compartment. The proposed method identified significant compartments in 23 of the 28 empirical food webs that were investigated. We further demonstrated that the effects of node removal were significantly higher within compartments than between compartments. Our methods and results emphasize the importance of energy channels in forming food web structures, which sheds light on the mechanisms of self‐organization within food webs.

Forest productivity mitigates human disturbance effects on late-seral prey exposed to apparent competitors and predators

Primary production can determine the outcome of management actions on ecosystem properties, thereby defining sustainable management. Yet human agencies commonly overlook spatio-temporal variations in productivity by recommending fixed resource extraction thresholds. We studied the influence of forest productivity on habitat disturbance levels that boreal caribou – a threatened, late-seral ungulate under top-down control – should be able to withstand. Based on 10 years of boreal caribou monitoring, we found that adult survival and recruitment to populations decreased with landscape disturbance, but increased with forest productivity. This benefit of productivity reflected the net outcome of an increase in resources for apparent competitors and predators of caribou, and a more rapid return to the safety of mature conifer forests. We estimated 3-fold differences in forest harvesting levels that caribou populations could withstand due to variations in forest productivity. The adjustment of ecosystem provisioning services to local forest productivity should provide strong conservation and socio-economic advantages.

How habitat-modifying organisms structure the food web of two coastal ecosystems

The diversity and structure of ecosystems has been found to depend both on trophic interactions in food webs and on other species interactions such as habitat modification and mutualism that form non-trophic interaction networks. However, quantification of the dependencies between these two main interaction networks has remained elusive. In this study, we assessed how habitat-modifying organisms affect basic food web properties by conducting in-depth empirical investigations of two ecosystems: North American temperate fringing marshes and West African tropical seagrass meadows. Results reveal that habitat-modifying species, through non-trophic facilitation rather than their trophic role, enhance species richness across multiple trophic levels, increase the number of interactions per species (link density), but decrease the realized fraction of all possible links within the food web (connectance). Compared to the trophic role of the most highly connected species, we found this non-trophic effects to be more important for species richness and of more or similar importance for link density and connectance. Our findings demonstrate that food webs can be fundamentally shaped by interactions outside the trophic network, yet intrinsic to the species participating in it. Better integration of non-trophic interactions in food web analyses may therefore strongly contribute to their explanatory and predictive capacity.

Weighting and indirect effects identify keystone species in food webs

Species extinctions are accelerating globally, yet the mechanisms that maintain local biodiversity remain poorly understood. The extinction of species that feed on or are fed on by many others (i.e. 'hubs') has traditionally been thought to cause the greatest threat of further biodiversity loss. Very little attention has been paid to the strength of those feeding links (i.e. link weight) and the prevalence of indirect interactions. Here, we used a dynamical model based on empirical energy budget data to assess changes in ecosystem stability after simulating the loss of species according to various extinction scenarios. Link weight and/or indirect effects had stronger effects on food-web stability than the simple removal of 'hubs', demonstrating that both quantitative fluxes and species dissipating their effects across many links should be of great concern in biodiversity conservation, and the potential for 'hubs' to act as keystone species may have been exaggerated to date.

Impact of biochar amendment on enzymatic resilience properties of mine spoils

Soil enzymes are crucial for soil nutrient cycling function. Understanding of the factors that control their response to major disturbances such as dumping of environmentally toxic acidic waste remains limited. We evaluated the effect of dumping of overburden (OB) and their amendments using biochar, on the resistance and resilience of soil enzyme activities involved in phosphorus, nitrogen, sulphur and carbon cycling (acid & alkaline phosphatase, urease, arylsulphatase, dehydrogenase, phenol oxidases, cellulase and β-glucosidase). For investigation the soils treated with OB and with the mixture of OB and biochar were used for the cultivation of bacopa were used. We assessed 0 day, 45 day and 90 days activities of the target soil enzymes, available phosphorus, nitrogen, sulphur, soil organic carbon and microbial identification. The resilience and resistance index of all the treatments were calculated. We found that phyto-remediated OB-contaminated soil has its own resilience power. However, biochar addition enhanced the enzyme resistance and resilience of OB contaminated soil. In silico study indicates that biochar-Fe complex play a significant role in enzymatic activities. Overall, the results indicate a significant influence of phytoremediation and biochar addition on soil enzymatic activity that is extremely resistant to OB. This study provides insight on how biochar addition modulates soil biochemical and microbiological response to OB affected soils.

Beyond cool: adapting upland streams for climate change using riparian woodlands

Managed adaptation could reduce the risks of climate change to the world's ecosystems, but there have been surprisingly few practical evaluations of the options available. For example, riparian woodland is advocated widely as shade to reduce warming in temperate streams, but few studies have considered collateral effects on species composition or ecosystem functions. Here, we use cross-sectional analyses at two scales (region and within streams) to investigate whether four types of riparian management, including those proposed to reduce potential climate change impacts, might also affect the composition, functional character, dynamics and energetic resourcing of macroinvertebrates in upland Welsh streams (UK). Riparian land use across the region had only small effects on invertebrate taxonomic composition, while stable isotope data showed how energetic resources assimilated by macroinvertebrates in all functional guilds were split roughly 50:50 between terrestrial and aquatic origins irrespective of riparian management. Nevertheless, streams draining the most extensive deciduous woodland had the greatest stocks of coarse particulate matter (CPOM) and greater numbers of 'shredding' detritivores. Stream-scale investigations showed that macroinvertebrate biomass in deciduous woodland streams was around twice that in moorland streams, and lowest of all in streams draining non-native conifers. The unexpected absence of contrasting terrestrial signals in the isotopic data implies that factors other than local land use affect the relative incorporation of allochthonous subsidies into riverine food webs. Nevertheless, our results reveal how planting deciduous riparian trees along temperate headwaters as an adaptation to climate change can modify macroinvertebrate function, increase biomass and potentially enhance resilience by increasing basal resources where cover is extensive (>60 m riparian width). We advocate greater urgency in efforts to understand the ecosystem consequences of climate change adaptation to guide future actions.

Role of detritus in a spatial food web model with diffusion

One of the central themes in modern ecology is the enduring debate on whether there is a relationship between the complexity of a biological community and its stability. In this paper, we focus on the role of detritus and spatial dispersion on the stability of ecosystems. Using Monte Carlo simulations we analyze two three-level models of food webs: a grazing one with the basal species (i.e., primary producers) having unlimited food resources and a detrital one in which the basal species uses detritus as a food resource. While the vast majority of theoretical studies neglects detritus, from our results it follows that the detrital food web is more stable than its grazing counterpart, because the interactions mediated by detritus damp out fluctuations in species' densities. Since the detritus model is the more complex one in terms of interaction patterns, our results provide evidence for the advocates of the complexity as one of the factors enhancing stability of ecosystems.

Interaction strengths in balanced carbon cycles and the absence of a relation between ecosystem complexity and stability

The strength of interactions is crucial to the stability of ecological networks. However, the patterns of interaction strengths in mathematical models of ecosystems have not yet been based upon independent observations of balanced material fluxes. Here we analyse two Antarctic ecosystems for which the interaction strengths are obtained: (1) directly, from independently measured material fluxes, (2) for the complete ecosystem and (3) with a close match between species and 'trophic groups'. We analyse the role of recycling, predation and competition and find that ecosystem stability can be estimated by the strengths of the shortest positive and negative predator-prey feedbacks in the network. We show the generality of our explanation with another 21 observed food webs, comparing random-type parameterisations of interaction strengths with empirical ones. Our results show how functional relationships dominate over average-network topology. They make clear that the classic complexity-instability paradox is essentially an artificial interaction-strength result.

Where are the parasites in food webs?

This review explores some of the reasons why food webs seem to contain relatively few parasite species when compared to the full diversity of free living species in the system. At present, there are few coherent food web theories to guide scientific studies on parasites, and this review posits that the methods, directions and questions in the field of food web ecology are not always congruent with parasitological inquiry. For example, topological analysis (the primary tool in food web studies) focuses on only one of six important steps in trematode life cycles, each of which requires a stable community dynamic to evolve. In addition, these transmission strategies may also utilize pathways within the food web that are not considered in traditional food web investigations. It is asserted that more effort must be focused on parasite-centric models, and a central theme is that many different approaches will be required. One promising approach is the old energetic perspective, which considers energy as the critical resource for all organisms, and the currency of all food web interactions. From the parasitological point of view, energy can be used to characterize the roles of parasites at all levels in the food web, from individuals to populations to community. The literature on parasite energetics in food webs is very sparse, but the evidence suggests that parasite species richness is low in food webs because parasites are limited by the quantity of energy available to their unique lifestyles.

Above- and belowground responses of Arctic tundra ecosystems to altered soil nutrients and mammalian herbivory

Theory and observation indicate that changes in the rate of primary production can alter the balance between the bottom-up influences of plants and resources and the top-down regulation of herbivores and predators on ecosystem structure and function. The exploitation ecosystem hypothesis (EEH) posited that as aboveground net primary productivity (ANPP) increases, the additional biomass should support higher trophic levels. We developed an extension of EEH to include the impacts of increases in ANPP on belowground consumers in a similar manner as aboveground, but indirectly through changes in the allocation of photosynthate to roots. We tested our predictions for plants aboveground and for phytophagous nematodes and their predators belowground in two common arctic tundra plant communities subjected to 11 years of increased soil nutrient availability and/or exclusion of mammalian herbivores. The less productive dry heath (DH) community met the predictions of EEH aboveground, with the greatest ANPP and plant biomass in the fertilized plots protected from herbivory. A palatable grass increased in fertilized plots while dwarf evergreen shrubs and lichens declined. Belowground, phytophagous nematodes also responded as predicted, achieving greater biomass in the higher ANPP plots, whereas predator biomass tended to be lower in those same plots (although not significantly). In the higher productivity moist acidic tussock (MAT) community, aboveground responses were quite different. Herbivores stimulated ANPP and biomass in both ambient and enriched soil nutrient plots; maximum ANPP occurred in fertilized plots exposed to herbivory. Fertilized plots became dominated by dwarf birch (a deciduous shrub) and cloudberry (a perennial forb); under ambient conditions these two species coexist with sedges, evergreen dwarf shrubs, and Sphagnum mosses. Phytophagous nematodes did not respond significantly to changes in ANPP, although predator biomass was greatest in control plots. The contrasting results of these two arctic tundra plant communities suggest that the predictions of EEH may hold for very low ANPP communities, but that other factors, including competition and shifts in vegetation composition toward less palatable species, may confound predicted responses to changes in productivity in higher ANPP communities such as the MAT studied here.

Constraints on food chain length arising from regional metacommunity dynamics

Classical ecological theory has proposed several determinants of food chain length, but the role of metacommunity dynamics has not yet been fully considered. By modelling patchy predator-prey metacommunities with extinction-colonization dynamics, we identify two distinct constraints on food chain length. First, finite colonization rates limit predator occupancy to a subset of prey-occupied sites. Second, intrinsic extinction rates accumulate along trophic chains. We show how both processes concur to decrease maximal and average food chain length in metacommunities. This decrease is mitigated if predators track their prey during colonization (habitat selection) and can be reinforced by top-down control of prey vital rates (especially extinction). Moreover, top-down control of colonization and habitat selection can interact to produce a counterintuitive positive relationship between perturbation rate and food chain length. Our results show how novel limits to food chain length emerge in spatially structured communities. We discuss the connections between these constraints and the ones commonly discussed, and suggest ways to test for metacommunity effects in food webs.

Effect of a transient perturbation on marine bacterial communities with contrasting history

AIMS

To evaluate the importance of the bacterial composition on the resilience of the organic matter assimilation in the sea.

METHODS AND RESULTS

Chemostats were inoculated with coastal and offshore bacterial communities. Bacterial density and protein synthesis increased before stabilizing, and this response to confinement was more marked in the offshore chemostats. Before the toluene perturbation the community structure in the coastal chemostats remained complex whereas the offshore chemostats became dominated by Alteromonas sp. After the perturbation, bacterial protein synthesis was inhibited before peaking briefly at a level fivefold to that observed before the perturbation and then stabilizing at a level comparable to that before the perturbation. Alteromonas dominated both the coastal and the offshore communities immediately after the perturbation and the coastal communities did not recover their initial complexity.

CONCLUSIONS

Cell lysis induced by the toluene perturbation favoured the growth of Alteromonas which could initiate growth rapidly in response to the nutrient pulse. Despite their different community structure in situ, the resilience of protein synthesis of coastal and offshore bacterial communities was dependent on Alteromonas, which dominated in the chemostats.

SIGNIFICANCE AND IMPACT OF THE STUDY

Here we show that although Alteromonas sp. dominated in artificial offshore and coastal communities in chemostats, their response time to the shock was different. This suggests that future perturbation studies on resilience in the marine environment should take account of ecosystem history.

Linking community and ecosystem dynamics through spatial ecology

Classical approaches to food webs focus on patterns and processes occurring at the community level rather than at the broader ecosystem scale, and often ignore spatial aspects of the dynamics. However, recent research suggests that spatial processes influence both food web and ecosystem dynamics, and has led to the idea of 'metaecosystems'. However, these processes have been tackled separately by 'food web metacommunity' ecology, which focuses on the movement of traits, and 'landscape ecosystem' ecology, which focuses on the movement of materials among ecosystems. Here, we argue that this conceptual gap must be bridged to fully understand ecosystem dynamics because many natural cases demonstrate the existence of interactions between the movements of traits and materials. This unification of concepts can be achieved under the metaecosystem framework, and we present two models that highlight how this framework yields novel insights. We then discuss patches, limiting factors and spatial explicitness as key issues to advance metaecosystem theory. We point out future avenues for research on metaecosystem theory and their potential for application to biological conservation.

Estimating interaction strengths in nature: experimental support for an observational approach

The complexity of food webs poses a significant hurdle for our growing understanding of the structure and dynamics of ecological communities. Empirical methods that measure the per capita strengths of trophic species interactions offer a means to identify keystone species and bridge mathematical models and data to synthesize our knowledge of population dynamics and predator feeding behaviors. Many such methods have been proposed, but few have seen independent validation of their estimates or underlying assumptions. This is particularly so with respect to the nonlinear functional responses by which predators often respond to their prey. Here I describe an empirical test of a recently proposed observational method for estimating the nonlinear strength of predator-prey interactions in the field. By applying the method to two populations of a predatory intertidal whelk, Haustrum scobina, I estimated its per capita attack rates on all nine of its observed prey species. These spanned two orders of magnitude in per capita strength. Concurrent experimental manipulations of the two predator populations provided population time series for the response of a mussel prey species, Xenostrobus pulex. I obtained independent interaction strength estimates for this focal interaction by fitting a sequence of hypothesized predator-prey models to these time series. Overall, site-specific models assuming linear functional responses performed better than all others. A direct comparison of the attack-rate estimates from the observational method with those of the best-performing nonlinear model nevertheless revealed high concordance between the two methods. The results of this study therefore support the use of the observational method in larger and more complex food webs and suggest that trophic interactions in the range of mean prey densities observed in nature are approximately linear.

Ecology of plant and free-living nematodes in natural and agricultural soil

Nematodes are aquatic organisms that depend on thin water films to live and move within existing pathways of soil pores of 25-100 mum diameter. Soil nematodes can be a tool for testing ecological hypotheses and understanding biological mechanisms in soil because of their central role in the soil food web and linkage to ecological processes. Ecological succession is one of the most tested community ecology concepts, and a variety of nematode community indices have been proposed for purposes of environmental monitoring. In contrast, theories of biogeography, colonization, optimal foraging, and niche partitioning by nematodes are poorly understood. Ecological hypotheses related to strategies of coexistence of nematode species sharing the same resource have potential uses for more effective biological control and use of organic amendments to foster disease suppression. Essential research is needed on nematodes in natural and agricultural soils to synchronize nutrient release and availability relative to plant needs, to test ecological hypotheses, to apply optimal foraging and niche partitioning strategies for more effective biological control, to blend organic amendments to foster disease suppression, to monitor environmental and restoration status, and to develop better predictive models for land-use decisions.

Food webs are more than the sum of their tritrophic parts

Many studies have aimed to understand food webs by investigating components such as trophic links (one consumer taxon eats one resource taxon), tritrophic interactions (one consumer eats an intermediate taxon, which eats a resource), or longer chains of links. We show here that none of these components (links, tritrophic interactions, and longer chains), individually or as an ensemble, accounts fully for the properties of the next higher level of organization. As a cell is more than its molecules, as an organ is more than its cells, and as an organism is more than its organs, in a food web, new structure emerges at every organizational level up to and including the whole web. We demonstrate the emergence of properties at progressively higher levels of structure by using all of the directly observed, appropriately organized, publicly available food web datasets with relatively complete trophic link data and with average body mass and population density data for each taxon. There are only three such webs, those of Tuesday Lake, Michigan, in 1984 and 1986, and Ythan Estuary, Scotland. We make the data freely available online with this report. Differences in web patterns between Tuesday Lake and Ythan Estuary, and similarities of Tuesday Lake in 1984 and 1986 despite 50% turnover of species, suggest that the patterns we describe respond to major differences between ecosystem types.

Parallel ecological networks in ecosystems

In ecosystems, species interact with other species directly and through abiotic factors in multiple ways, often forming complex networks of various types of ecological interaction. Out of this suite of interactions, predator-prey interactions have received most attention. The resulting food webs, however, will always operate simultaneously with networks based on other types of ecological interaction, such as through the activities of ecosystem engineers or mutualistic interactions. Little is known about how to classify, organize and quantify these other ecological networks and their mutual interplay. The aim of this paper is to provide new and testable ideas on how to understand and model ecosystems in which many different types of ecological interaction operate simultaneously. We approach this problem by first identifying six main types of interaction that operate within ecosystems, of which food web interactions are one. Then, we propose that food webs are structured among two main axes of organization: a vertical (classic) axis representing trophic position and a new horizontal 'ecological stoichiometry' axis representing decreasing palatability of plant parts and detritus for herbivores and detrivores and slower turnover times. The usefulness of these new ideas is then explored with three very different ecosystems as test cases: temperate intertidal mudflats; temperate short grass prairie; and tropical savannah.

Food chains in freshwaters

There are three hypothesized controls on food-chain length (FCL): energy supply (or "resource availability"), ecosystem size and disturbance (or "environmental variation"). In this article, the evidence for controls on FCL in freshwater ecosystems is evaluated. First, the various ways FCL can be measured are defined. Food-chain length typically is estimated as (1) connectance-based FCL--an average connectance between basal resources and top consumers, (2) functional FCL--by experimental determination of functionally significant effects of a top predator on lower trophic-level biomass patterns, and (3) realized FCL--an average connectance measure weighted by energy flow between basal consumers and the consumer occupying the maximum trophic position in the food web. Second, all evidence for relationships between the three hypothetical controls and FCL in freshwater ecosystems are evaluated. The review includes studies from streams, lakes, ponds, wetlands, phytotelmata, and experimental containers. Surprisingly, few studies of FCL in freshwaters that test the same suite of controls using the same methods are found. Equally compelling results arise from case studies based on functional, realized, and connectance-based measures of FCL. Third, 10 rules of thumb that could increase similarity of future studies, thereby facilitating synthesis across systems, are suggested. Fourth, it is discussed how FCL influences the concentration of contaminants in large-bodied animals (many of which are consumed by humans) as well as the efficacy of biocontrol applications in agriculture. Finally, there is a discussion of the potential relationships between global climate change, hydrology, and FCL in freshwaters.

Upgrading system-oriented ecotoxicological research

In the 1990s the Dutch government expressed the need to investigate the impacts of diffuse pollution at (sub)-ecosystem levels. The resulting Netherlands Stimulation Programme on System-oriented Ecotoxicological Research (SSEO programme) ran from 1998 to 2006. Its primary objective was to assess the impacts of low- to medium-level, diffuse, multiple contaminations on ecosystems. The research results were intended as underpinning for policies on environmental, conservation and nature issues. Research was carried out at three sites that were selected because of their importance for nature management and the presence of diffuse contamination. These sites were: a river meadow/floodplain area (Afferdensche en Deestsche Waarden), an estuarine reed-land area (Biesbosch) and an area of lowland peat soils that had been contaminated with urban waste in past centuries (De Ronde Venen). This introductory paper describes the set-up of the programme, the types of diffuse contamination, the interactions between pollutants and other stress factors, the various methodologies used to integrate the effects on (sub)ecosystem level, and the consequences for formulating policies for and the management of these types of locations. The results of the programme are diverse and complicated and show how difficult it is to draw firm, unambiguous, generic conclusions about the effects at the 'total' ecosystem level. It is however, possible to draw conclusions about effects on major components of ecosystems: 1) The distribution of contaminants, both from a spatial, chemical and ecotoxicological point of view, plays a decisive role in actual effect levels. Even when total contaminant loads are high, such as in estuarine and floodplain areas, bioavailability may be so low that the actual effects are limited. The irregular, heterogeneous, spatial distribution of contaminants in the soil further complicates effect studies, impact assessments and monitoring. 2) Various stress factors, other than contaminants, both natural and anthropogenic, also play a role. The negative effect of the repeated inundation of floodplain areas, for instance, greatly interferes with the impact of contaminants in the lower soil layers. 3) A major problem is to find a method to extrapolate the observations from individual and population levels to the ecosystem level. In addition to traditional food-chain models and similar approaches, the potential of other, not yet extensively explored, ecosystem interaction mechanisms is discussed. 4) Finally, the results have to be interpreted from a policy point of view, both for national soil policies and for implementing the EU Soil Strategy regulations.

Estimating nonlinear interaction strengths: an observation-based method for species-rich food webs

Efforts to estimate the strength of species interactions in species-rich, reticulate food webs have been hampered by the multitude of direct and indirect interactions such systems exhibit and have been limited by an assumption that pairwise interactions display linear functional forms. Here we present a new method for directly measuring, on a per capita basis, the nonlinear strength of trophic species interactions within such food webs. This is an observation-based method, requiring three pieces of information: (1) species abundances, (2) predator and prey-specific handling times, and (3) data from predator-specific feeding surveys in which the number of individuals observed feeding on each of the predator's prey species has been tallied. The method offers a straightforward way to assess the completeness of one's sampling effort in accurately estimating interaction strengths through the construction of predator-specific prey accumulation curves. The method should be applicable to a variety of systems in which empirical estimates of direct interaction strengths have thus far remained elusive.

Reconciling complexity with stability in naturally assembling food webs

Understanding how complex food webs assemble through time is fundamental both for ecological theory and for the development of sustainable strategies of ecosystem conservation and restoration. The build-up of complexity in communities is theoretically difficult, because in random-pattern models complexity leads to instability. There is growing evidence, however, that nonrandom patterns in the strengths of the interactions between predators and prey strongly enhance system stability. Here we show how such patterns explain stability in naturally assembling communities. We present two series of below-ground food webs along natural productivity gradients in vegetation successions. The complexity of the food webs increased along the gradients. The stability of the food webs was captured by measuring the weight of feedback loops of three interacting 'species' locked in omnivory. Low predator-prey biomass ratios in these omnivorous loops were shown to have a crucial role in preserving stability as productivity and complexity increased during succession. Our results show the build-up of food-web complexity in natural productivity gradients and pin down the feedback loops that govern the stability of whole webs. They show that it is the heaviest three-link feedback loop in a network of predator-prey effects that limits its stability. Because the weight of these feedback loops is kept relatively low by the biomass build-up in the successional process, complexity does not lead to instability.

Long-term effects of short-term perturbation in a subalpine grassland

Theoretical advances and short-term experimental studies have furthered our understanding of how ecosystems respond to perturbation. However, there are few well-replicated experimental studies that allow an assessment of long-term responses. Results from a controlled, large-scale field experiment in a subalpine grassland near Interlaken, Switzerland, show that 2-4 years of liming (Ca: 40 g x m(-2) x yr(-1)) still significantly affected the composition of the vegetation and the soil microbial community nearly 70 years after the treatments were imposed, whereas NPK fertilization (8 g x m(-2) x yr(-1)) only marginally affected vegetation composition. The exchangeable content of Ca ions and soil pH were higher in limed plots but were unaffected in fertilized plots. Plant species and PLFAs (phospholipid fatty acids) indicating low pH values were found in higher abundance in the unlimed plots, suggesting that the long-lasting effects of liming on the above- and belowground communities were mediated through changes in soil pH. The results of this long-term study indicate that the resilience of mountain ecosystems may be particularly low in response to perturbations that substantially alter soil pH or other key determinants of belowground processes.

On the relationship between productivity and food chain length at different ecological levels

The effects of energy on food web structure have been debated for at least 80 years. Nevertheless, the empirical evidence is meager, especially from terrestrial ecosystems. We analyzed long-term temporal variation in food chain length in a semiarid continental ecosystem, where productivity shows large interannual variations. Incidence of nonherbivorous prey in predator diet was used as a proxy of trophic position, allowing us to analyze the effect of productivity on food chain length within the assemblage of top predators (which comprises the most abundant and persistent top predators in the system) and to compare observed patterns at the species and assemblage levels. At the species level, the relationship between trophic position and productivity took different forms, varying in magnitude and shape. This pattern contrasts with the consistent increase in food chain length, with productivity observed at the assemblage level. Our results indicate that productivity can be a main determinant of food chain length, but not necessarily because of energy limitation. Further, the increase in food chain length with available energy probably represents an aggregate attribute, driven to a large extent by predators with higher consumption rates, rather than being the result of compensatory responses among predators.